RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3590
(258 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 8e-04
Identities = 44/252 (17%), Positives = 77/252 (30%), Gaps = 84/252 (33%)
Query: 20 DSKYVGMSVYNVVLMCIMGAAISFVISDKQDASFVIISLFILFCTT-ATLCLVFVPKIVE 78
D K V ++ + I +I K S + LF + + FV ++
Sbjct: 34 DCKDVQDMPKSI----LSKEEIDHIIMSKDAVSGTLR-LFWTLLSKQEEMVQKFVEEV-- 86
Query: 79 LKRNPQGSIDKRIRATLR-PMSKTRRDSSELEEKLKD----AKMSNMRHRKILAERENEL 133
L+ N + I+ R P TR + + D AK + R + L +L
Sbjct: 87 LRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-----KL 140
Query: 134 QALLSRLGSES-LALPSSGPHGKTPPGQPPGKSLPSALKPPQPEALTVVKRELLVPNNHG 192
+ L L + + G G GK+ + AL V ++
Sbjct: 141 RQALLELRPAKNVLI-----DGV--LGS--GKT---WV------ALDVC-------LSYK 175
Query: 193 ILSEDPFY-YW----------------KALCHALK----------------------HLK 213
+ + F +W + L + + L+
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 214 RLLQSQHYEMML 225
RLL+S+ YE L
Sbjct: 236 RLLKSKPYENCL 247
Score = 34.8 bits (79), Expect = 0.027
Identities = 42/299 (14%), Positives = 85/299 (28%), Gaps = 82/299 (27%)
Query: 18 LNDSKYV---GM-----SVYNVVLMCIMGAAISFVISDKQDASFVIISLFILFCTTATLC 69
L +K V G+ + V L +S+ + K D F I L + C +
Sbjct: 147 LRPAKNVLIDGVLGSGKTW--VALD----VCLSYKVQCKMD--FKIFWLNLKNCNSPETV 198
Query: 70 LVFVPKIVELKRNPQGSIDKRIRATLRPMSKTRRDSSELEEKLKDAKMSNMRHRK---IL 126
L E+ + ID + S + ++ +L+ + + + +L
Sbjct: 199 L-------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-LLKSKPYENCLLVL 250
Query: 127 AE--RENELQA--------LLSR-------LGSESLALPSSGPHGK--TPP--------- 158
A L +R L + + S H TP
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 159 -GQPPGKSLPSALKPPQPEALTVVKRELLVPNNHGILSEDPFYYWK-----ALCHA---- 208
P + LP + P L+++ + + WK L
Sbjct: 311 LDCRP-QDLPREVLTTNPRRLSIIAESIRDGLAT-------WDNWKHVNCDKLTTIIESS 362
Query: 209 LKHLKRLLQSQHYEMML---KQTN-PVMV-----RPATHYQVDLMRSACQDYWILSGWP 258
L L+ + ++ + + P ++ V ++ + Y ++ P
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.029
Identities = 36/256 (14%), Positives = 57/256 (22%), Gaps = 100/256 (39%)
Query: 46 SDKQDASFVIISLFILFCTTATLCLVFVPKIVELKRNPQGSIDKRIRATLRPMSKTRRDS 105
+D + + L F L +V +VE + G D+ + L
Sbjct: 50 ADDEPTT--PAELVGKF-------LGYVSSLVE--PSKVGQFDQVLNLCLT--------- 89
Query: 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRL-GSESLALPSSGP------HGKTPP 158
E E L N++ AL ++L L + +
Sbjct: 90 -EFE-------------NCYL--EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 159 GQPPGKSLPSALK----------------------------------PPQPEALTVVKRE 184
+P K SAL L E
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 185 LLVPNNHGILSEDPFYY-------W----------KALCHA---LKHLKRLLQSQHYEMM 224
L L + + W L L ++Q HY +
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP-LIGVIQLAHYVVT 252
Query: 225 LKQT--NPVMVRPATH 238
K P +R
Sbjct: 253 AKLLGFTPGELRSYLK 268
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study,
celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Length = 741
Score = 32.6 bits (75), Expect = 0.13
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 144 SLALPSSGPHGKTPPGQPPGKSLPSALKPPQPEALTVVKRELLVPNNHGILSEDPFYYW 202
LAL + +TPP +++PS P + LV ++ G DP + W
Sbjct: 12 PLALATPVAFAQTPPTLAKDQAMPSLPPYP------ASPQVPLVEDHFGEKVSDP-WRW 63
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.47
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 3/20 (15%)
Query: 164 KSLPSALKPPQPE---ALTV 180
K L ++LK + AL +
Sbjct: 23 KKLQASLKLYADDSAPALAI 42
Score = 29.5 bits (65), Expect = 0.67
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 4/25 (16%)
Query: 128 ERENELQALLSRLGSESLALPSSGP 152
E++ L+ L + L L S P
Sbjct: 18 EKQ-ALKKLQASL---KLYADDSAP 38
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural
genomics, protein regulation, transcription; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 28.3 bits (63), Expect = 0.89
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALPSSG 151
+ L+ + ++ H++++ +LQAL SRL +E+ PSSG
Sbjct: 50 PQSLEALAVRSLGHQELILGGVEQLQALSSRLQTENSG-PSSG 91
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC
tepraloxydim, ATP-binding, biotin, fatty acid
biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae}
PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A*
3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A*
1uyt_A 1uyv_A
Length = 758
Score = 29.1 bits (65), Expect = 1.6
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 83 PQG--SIDKRIRATLRPMSKTRRDSSELEEKLKDAKMSNMRHRKI---LAERENELQALL 137
PQG I R L M++ EL +L + ++ H++I LA+RE EL +
Sbjct: 552 PQGMVGIKFRREKLLDTMNRLDDKYRELRSQLSNKSLAPEVHQQISKQLADRERELLPIY 611
Query: 138 SRLGSESLALPS 149
++ + L
Sbjct: 612 GQISLQFADLHD 623
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 28.4 bits (63), Expect = 1.7
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 88 DKRIRATLRPMSKTRRDSSELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140
+ R R ++K + +LE++L K+ + + + E++++ LLS+
Sbjct: 90 ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKN 142
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA
complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Length = 87
Score = 27.3 bits (60), Expect = 1.7
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 88 DKRIR---ATLRPMSKTRRDSSELEEKLKDAKMSNMRHRKILAERENELQALLSRLGSES 144
+R R A + K + + E + K+ + N R +K + + EL L +
Sbjct: 18 IRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77
Query: 145 LALPSSGPH 153
L +S H
Sbjct: 78 EPLLASSGH 86
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental
regulation, tyrosine kinase, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
a.60.1.2
Length = 81
Score = 27.0 bits (60), Expect = 1.8
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 109 EEKLKDAKMSNMRHRK-ILAERENELQALLSRLGSESLALPSSG 151
+ ++ ++ M H+K IL +Q + ++L S + PSSG
Sbjct: 42 AQDVRALGITLMGHQKKIL----GSIQTMRAQLTSTQGSGPSSG 81
>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A,
chloroplastic; photosynthesis, electron transfer,
membrane proteins, large complexes; HET: CL1 PQN BCR LMU
LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_E*
2wsf_E* 2o01_E* 3lw5_E*
Length = 143
Score = 28.0 bits (61), Expect = 1.9
Identities = 12/59 (20%), Positives = 16/59 (27%)
Query: 115 AKMSNMRHRKILAERENELQALLSRLGSESLALPSSGPHGKTPPGQPPGKSLPSALKPP 173
A S+ R N L+ R + SS P G + PP
Sbjct: 20 AGASSSRSSVSFLPMRNAGSRLVVRAAEDPAPASSSSKDSPAAAAAPDGATATKPKPPP 78
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP:
c.56.5.4 d.58.19.1
Length = 470
Score = 28.8 bits (64), Expect = 2.0
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 119 NMRHRKILAERENELQALLSRLGSESLALPSSGPHGKTPPGQPPGKSLPSALK 171
++ +++ +++ + L L +A+ SS P GK A+
Sbjct: 2 DLNFKELAEAKKDAILKDLEEL----IAIDSSEDLENATEEYPVGKGPVDAMT 50
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 118
Score = 27.2 bits (60), Expect = 3.1
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 113 KDAKMSNMRHRKILAER--------ENELQALLSRLGSESLALPSSG 151
D K++ + R+ + R E+ +L G S + PSSG
Sbjct: 72 DDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSASGPSSG 118
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein,
multidrug resistanc membrane protein; HET: BOG; 1.80A
{Vibrio cholerae}
Length = 442
Score = 28.1 bits (63), Expect = 3.3
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 126 LAERENELQALLSRLGSESLALPSSGPHGKTPPGQPPGKSLPSAL 170
+ ++N L AL+ + + ++ + G P L
Sbjct: 213 IQLQKNALAALVGQGPDRAASIEEPHITLTSRYGLPSE--AGVGL 255
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 26.7 bits (59), Expect = 3.5
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 91 IRATLRPMSKTRRDSSELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140
I + + T ++ E+L ++ S + + A+ E+E+ +L R+
Sbjct: 46 IVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 26.4 bits (58), Expect = 3.9
Identities = 9/50 (18%), Positives = 22/50 (44%)
Query: 91 IRATLRPMSKTRRDSSELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140
+ + + T + + E +K+A+ + K + E E+ +L R+
Sbjct: 46 QQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95
>2b9v_A Alpha-amino acid ester hydrolase; catalytic triad,
alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus}
SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A
Length = 652
Score = 27.8 bits (61), Expect = 3.9
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 146 ALPSSGPHGKTPPGQPPGKSLPSALKPPQPEALTVVKRELLVP 188
A + P G +P+++ P + +KRE++VP
Sbjct: 1 APAADAAQAHDPLSVQTGSDIPASVHMPTDQQRDYIKREVMVP 43
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.9 bits (62), Expect = 4.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 106 SELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140
S+L+E L+ K + + K + EL+AL + L
Sbjct: 1126 SDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 27.3 bits (60), Expect = 4.8
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 88 DKRIRATLRPMSKTRRDSSELEEKLKDAKMSNMRHRKILAERENELQAL 136
+ R R ++K + +LE++L K+ + L N++ ++
Sbjct: 236 ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
Score = 26.9 bits (59), Expect = 7.4
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 86 SIDKRIRATLRPMSKTRRDSSELEEKLKDAKMSNMRHRKILAERENELQALLSRL 140
+I K+++ + E E K A+ + + L + +L+A L
Sbjct: 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDEL 57
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 99
Score = 26.0 bits (57), Expect = 5.9
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 109 EEKLKDAKMSNMRHRKILAERENELQALLSRLGSESLALPSSG 151
E L ++ H+K + + ++ +S+ + + PSSG
Sbjct: 57 SEDLLRIGITLAGHQKKILNSIHSMRVQISQSPTAMASGPSSG 99
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease,
hydrolase-HY inhibitor complex; 1.65A {Homo sapiens}
SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A
3r7b_A 3r7n_A 3r7s_A
Length = 167
Score = 26.5 bits (58), Expect = 7.4
Identities = 8/52 (15%), Positives = 17/52 (32%)
Query: 26 MSVYNVVLMCIMGAAISFVISDKQDASFVIISLFILFCTTATLCLVFVPKIV 77
V + ++ ++ + I + +F LF L PK+
Sbjct: 98 HRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNKPKMF 149
>3tcv_A GCN5-related N-acetyltransferase; GRAM negative coccobacillus,
brucellosis, acyl CO-A, arylami transferase; 1.75A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 246
Score = 26.7 bits (59), Expect = 8.2
Identities = 5/32 (15%), Positives = 8/32 (25%), Gaps = 1/32 (3%)
Query: 148 PSSGPHGKTPPGQPPGKSLPSALKPPQPEALT 179
+ G L + P+PE
Sbjct: 8 HMGTLEAQ-TQGPGSMTDLQNWTPRPKPERKI 38
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA
complex, transcription factor, BZIP, C/EBP; 1.80A {Homo
sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A
1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Length = 78
Score = 24.9 bits (54), Expect = 9.2
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 79 LKRNPQGSIDKRIR---ATLRPMSKTRRDSSELEEKLKDAKMSNMRHRKILAERENELQA 135
+ ++ +R R A + K + + E + K+ + N R +K + + EL
Sbjct: 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68
Query: 136 L 136
L
Sbjct: 69 L 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.406
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,916,563
Number of extensions: 225826
Number of successful extensions: 670
Number of sequences better than 10.0: 1
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 33
Length of query: 258
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 166
Effective length of database: 4,133,061
Effective search space: 686088126
Effective search space used: 686088126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)