BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3598
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VWY6|TAF8_DROME Transcription initiation factor TFIID subunit 8 OS=Drosophila
melanogaster GN=Taf8 PE=1 SV=1
Length = 328
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
THKQPVTEYEAIREKAA QKRD+ +AL KF+ KT ++F D+ F LI KP PY
Sbjct: 146 THKQPVTEYEAIREKAACQKRDIEKALTKFLCKTTETNNLFPTEDNMFPLIACKPAFPPY 205
Query: 83 -LCLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGN 141
L P DQVF+ +E + + P K ++ E +E DG D+++EE+ E +
Sbjct: 206 AAALNPTDQVFDFEELEYHYLVANRTEDEPSKDDGEEGDSENEEMDG--DKSKEEKPELD 263
Query: 142 EEPEDTSN-MVPDSEAIDNPYLRPVKYPQRIKSV 174
+P +N + ++ IDNPYLR P+R K+
Sbjct: 264 IKPNSNTNKAILENPNIDNPYLRAATLPKRSKNC 297
>sp|Q28J24|TAF8_XENTR Transcription initiation factor TFIID subunit 8 OS=Xenopus
tropicalis GN=taf8 PE=2 SV=1
Length = 293
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 26/154 (16%)
Query: 23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
T+++PV +Y+ +REKAA+Q+RD+ RAL +F+ KT + +F + F LI +P +PY
Sbjct: 154 TYREPVCDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDTSTFPLIAARPLSIPY 213
Query: 83 L-CLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGN 141
L L+P + ++ E+ + ++D+ D E + E
Sbjct: 214 LNALLPSELELQQVEETDSSE-------------------QDDQTDAENLSMHLQGDEVG 254
Query: 142 EEPEDTSNMVPDS------EAIDNPYLRPVKYPQ 169
E E++S + +S IDNPYLRPVK P+
Sbjct: 255 MEKENSSVLQQNSMKGGEETLIDNPYLRPVKKPK 288
>sp|Q7ZYA2|TAF8_XENLA Transcription initiation factor TFIID subunit 8 OS=Xenopus laevis
GN=taf8 PE=2 SV=1
Length = 293
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 20/151 (13%)
Query: 23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
T+++PV +Y+ +REKAA+Q+RD+ RAL +F+ KT + +F + F LI +P +PY
Sbjct: 154 TYREPVCDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDTSTFPLIAARPLSIPY 213
Query: 83 L-CLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEA---EEEEG 138
L L+P + ++ D +S Q + T ++ ++ DE E++ A ++
Sbjct: 214 LNALLPSELELQQ-VDETDSSEQDDQTDT----ENLSLHLQGDEVGMEKENASVLQQNSM 268
Query: 139 EGNEEPEDTSNMVPDSEAIDNPYLRPVKYPQ 169
+G EE IDNPYLRPVK P+
Sbjct: 269 KGGEE-----------TLIDNPYLRPVKKPK 288
>sp|Q7Z7C8|TAF8_HUMAN Transcription initiation factor TFIID subunit 8 OS=Homo sapiens
GN=TAF8 PE=1 SV=1
Length = 310
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 24/155 (15%)
Query: 23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
T+++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT + +F + F LI +P +PY
Sbjct: 164 TYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPY 223
Query: 83 L-CLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEED-----GEEDEAEEE 136
L L+P + ++ E+ S ++ + D E+ ED E+
Sbjct: 224 LTALLPSELEMQQMEET----------------DSSEQDEQTDTENLALHISMEDSGAEK 267
Query: 137 EGEG--NEEPEDTSNMVPDSEAIDNPYLRPVKYPQ 169
E + P + + + IDNPYLRPVK P+
Sbjct: 268 ENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKKPK 302
>sp|A7MAZ4|TAF8_BOVIN Transcription initiation factor TFIID subunit 8 OS=Bos taurus
GN=TAF8 PE=2 SV=1
Length = 310
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 14/150 (9%)
Query: 23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
T+++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT + +F + F LI +P +PY
Sbjct: 164 TYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPY 223
Query: 83 L-CLIPKDQVFE--EDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGE 139
L L+P + + E+ D+ + Q + P+ + D+ E +E
Sbjct: 224 LTALLPSELEMQQMEETDSSEQDEQTDTENLPL-------HISPDDSGAE----KENTSV 272
Query: 140 GNEEPEDTSNMVPDSEAIDNPYLRPVKYPQ 169
+ P + + + IDNPYLRPVK P+
Sbjct: 273 LQQNPSLSGSRNGEESIIDNPYLRPVKKPK 302
>sp|Q9EQH4|TAF8_MOUSE Transcription initiation factor TFIID subunit 8 OS=Mus musculus
GN=Taf8 PE=2 SV=1
Length = 308
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 82/148 (55%), Gaps = 10/148 (6%)
Query: 23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
T+++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT + +F + F LI +P +PY
Sbjct: 162 TYREPVSDYQILREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPY 221
Query: 83 L-CLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGN 141
L L+P + ++ E+ +S Q+++ T ++ + D+ E++ A + +
Sbjct: 222 LTALLPSELEIQQMEET-DSSEQEEQTDT----ENNALHISTDDSGAEKESASVLQQSSS 276
Query: 142 EEPEDTSNMVPDSEAIDNPYLRPVKYPQ 169
+ IDNPYLRPVK P+
Sbjct: 277 LSGSRNG----EESVIDNPYLRPVKKPK 300
>sp|Q5ZMS1|TAF8_CHICK Transcription initiation factor TFIID subunit 8 OS=Gallus gallus
GN=TAF8 PE=2 SV=1
Length = 244
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 14/150 (9%)
Query: 23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
T+++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT + +F + F LI +P +PY
Sbjct: 101 TYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTVPY 160
Query: 83 L-CLIPKDQVFE--EDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGE 139
L L+P + + E+ D+ + Q + P+ + E++ +
Sbjct: 161 LTALLPSELEMQQMEETDSSEQDDQTDTENLPLHISTDDSGPEKENASVLQQNTSLSGSR 220
Query: 140 GNEEPEDTSNMVPDSEAIDNPYLRPVKYPQ 169
EE NM IDNPYLRPVK P+
Sbjct: 221 NGEE-----NM------IDNPYLRPVKKPK 239
>sp|Q6P0T2|TAF8_DANRE Transcription initiation factor TFIID subunit 8 OS=Danio rerio
GN=taf8 PE=1 SV=1
Length = 308
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
T ++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT + +F + F LI KP +PY
Sbjct: 166 TFREPVSDYQVVREKAASQRRDVERALTRFMAKTGETQSLFKDDISAFPLIAAKPSPIPY 225
Query: 83 L-CLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGN 141
L L+P + + E+ +S Q + + + + +D D D+ E G
Sbjct: 226 LSALLPSELELQSLEET-DSSEQDDQ----MDNDNNTSHIMQD--DSGADKENEVLPPGG 278
Query: 142 EEPEDTSNMVPDSEAIDNPYL 162
P +N + IDNPYL
Sbjct: 279 VVPSGKAN---EENMIDNPYL 296
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.127 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,343,427
Number of Sequences: 539616
Number of extensions: 3458005
Number of successful extensions: 76200
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1718
Number of HSP's successfully gapped in prelim test: 1081
Number of HSP's that attempted gapping in prelim test: 37360
Number of HSP's gapped (non-prelim): 21884
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 57 (26.6 bits)