Query psy3598
Match_columns 175
No_of_seqs 35 out of 37
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 20:42:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t92_A General secretion pathw 30.6 1.4E+02 0.0049 22.1 6.3 63 34-104 8-80 (116)
2 3uul_A Utrophin; spectrin repe 27.0 71 0.0024 21.3 3.7 23 30-52 93-115 (118)
3 3gn9_A Type II secretory pathw 24.0 2.1E+02 0.0072 21.2 6.1 64 35-105 11-82 (115)
4 3uun_A Dystrophin; triple heli 22.4 98 0.0034 20.4 3.7 23 30-52 93-115 (119)
5 2yy0_A C-MYC-binding protein; 19.3 1.6E+02 0.0054 19.2 4.1 34 15-48 3-38 (53)
6 2rfe_E ERBB receptor feedback 15.5 71 0.0024 20.6 1.6 20 79-98 14-34 (40)
7 3h87_C Putative uncharacterize 14.6 1.2E+02 0.004 21.3 2.7 35 23-57 6-40 (73)
8 2dhy_A CUE domain-containing p 14.1 79 0.0027 21.6 1.6 50 7-59 13-62 (67)
9 1kq6_A NCF-1, P47PHOX, neutrop 13.8 1.8E+02 0.0061 21.1 3.7 28 10-55 73-100 (141)
10 3abf_A 4-oxalocrotonate tautom 13.6 1.6E+02 0.0053 17.7 2.8 18 39-56 14-31 (64)
No 1
>1t92_A General secretion pathway protein G; domain-swapping, zinc, pseudopilin, protein transport; 1.60A {Klebsiella pneumoniae} SCOP: d.24.1.3
Probab=30.58 E-value=1.4e+02 Score=22.10 Aligned_cols=63 Identities=21% Similarity=0.358 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhCCCccccCCCCCceeeeccCCCCC---------ccc-cccCCCccccccchhhhccC
Q psy3598 34 IREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEML---------PYL-CLIPKDQVFEEDEDNIQASP 103 (175)
Q Consensus 34 IREkaA~QkRdvEkALtrFlaKT~pt~SLF~~d~~~FpLI~~kP~~~---------pYL-ALlP~dQVFD~die~~~~~~ 103 (175)
-..++..|-+.++.||..|.+.++- +++...-.--|..+|... ||| . +|.|-. .-.|+|..+
T Consensus 8 k~~~a~adi~~l~~ALd~Y~lD~G~----YPtt~qgL~aLv~~P~~~~~~~~w~~g~YL~~-~P~DPW---G~~Y~Y~~p 79 (116)
T 1t92_A 8 DRQKVVSDLVALEGALDMYKLDNSR----YPTTEQGLQALVSAPSAEPHARNYPEGGYIRR-LPQDPW---GSDYQLLSP 79 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSS----CCCTTTCGGGGTSCCSSSSCCSSCCTTTTSSS-CCBCTT---SCBCEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC----CCCcHHHHHHHHhCcCCCcccccccCCCCccc-cCCCCC---CCceEEecC
Confidence 3445667788999999999998642 333322222222344331 799 6 676533 345666664
Q ss_pred C
Q psy3598 104 Q 104 (175)
Q Consensus 104 ~ 104 (175)
.
T Consensus 80 g 80 (116)
T 1t92_A 80 G 80 (116)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=27.00 E-value=71 Score=21.26 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy3598 30 EYEAIREKAATQKRDLARALNKF 52 (175)
Q Consensus 30 eYeaIREkaA~QkRdvEkALtrF 52 (175)
-|..|..++++.++.++.||..+
T Consensus 93 rw~~L~~~~~~R~~~L~~aL~~~ 115 (118)
T 3uul_A 93 RWEALRVESMERQSRLHDALMEL 115 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999765
No 3
>3gn9_A Type II secretory pathway, pseudopilin EPSG; general secretory pathway, major pilin, protein transport, C methylation; 1.86A {Vibrio vulnificus} PDB: 3fu1_A
Probab=24.02 E-value=2.1e+02 Score=21.21 Aligned_cols=64 Identities=25% Similarity=0.399 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhCCCccccCCCCCceeeeccCCC--------CCccccccCCCccccccchhhhccCCc
Q psy3598 35 REKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPE--------MLPYLCLIPKDQVFEEDEDNIQASPQK 105 (175)
Q Consensus 35 REkaA~QkRdvEkALtrFlaKT~pt~SLF~~d~~~FpLI~~kP~--------~~pYLALlP~dQVFD~die~~~~~~~r 105 (175)
..++..|-+.|+.||..|.+-++ -|+....-.--|..+|. .-|||--+|.|-. .-.|+|..+..
T Consensus 11 ~~~a~~di~~l~~ALd~Y~lD~G----~YPtteqGL~aLv~~p~~~~p~~w~~g~YL~~lP~DPW---G~~Y~Y~~pg~ 82 (115)
T 3gn9_A 11 QQKAITDIVALENALDMYKLDNS----VYPTTDQGLEALVTKPSSPEPRNYRNGGYIKRLPKDPW---GNEYQYMSPGD 82 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS----SCCCTTTCGGGGTSCCCSSCCSSCCTTCSSSSCCBCTT---SCBCEEESSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC----CCCCcHHHHHHHHhCcCCcccccccCCCcccCCCCCCC---CCCEEEeCCCC
Confidence 34566677899999999999854 34444222222333432 1389922675421 55677777544
No 4
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=22.42 E-value=98 Score=20.41 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy3598 30 EYEAIREKAATQKRDLARALNKF 52 (175)
Q Consensus 30 eYeaIREkaA~QkRdvEkALtrF 52 (175)
-|..|..+++..++.++.||..+
T Consensus 93 rw~~L~~~~~~R~~~Le~aL~~~ 115 (119)
T 3uun_A 93 RWECLRVASMEKQSNLHRVLMDL 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888999999999999999764
No 5
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=19.27 E-value=1.6e+02 Score=19.17 Aligned_cols=34 Identities=18% Similarity=0.079 Sum_probs=19.4
Q ss_pred CchhcccccC--CCCcchHHHHHHHHHHHHHHHHHH
Q psy3598 15 SVVALLAETH--KQPVTEYEAIREKAATQKRDLARA 48 (175)
Q Consensus 15 pHTYirTpt~--k~PvteYeaIREkaA~QkRdvEkA 48 (175)
+--||+==.+ .++..||+++|...++.|..++.-
T Consensus 3 AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L 38 (53)
T 2yy0_A 3 ALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAI 38 (53)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 4456666665 666789999999999999888743
No 6
>2rfe_E ERBB receptor feedback inhibitor 1; kinase domain, inhibition, dimer, peptide, alternative splicing, anti-oncogene, ATP-binding, cell cycle; 2.90A {Homo sapiens} PDB: 2rfd_C
Probab=15.48 E-value=71 Score=20.64 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=17.6
Q ss_pred CCccc-cccCCCccccccchh
Q psy3598 79 MLPYL-CLIPKDQVFEEDEDN 98 (175)
Q Consensus 79 ~~pYL-ALlP~dQVFD~die~ 98 (175)
.+-|+ .+||.-|-|-.|..|
T Consensus 14 lp~y~s~~mp~TqSfa~dpkY 34 (40)
T 2rfe_E 14 LPSYLNGVMPPTQSFAPDPKY 34 (40)
T ss_dssp CCCCTTSCCCSCEECTTSTTT
T ss_pred CccccccccCccccccCCccc
Confidence 37799 999999999999865
No 7
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=14.62 E-value=1.2e+02 Score=21.32 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=28.7
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhHhC
Q psy3598 23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTE 57 (175)
Q Consensus 23 t~k~PvteYeaIREkaA~QkRdvEkALtrFlaKT~ 57 (175)
+.-.|+--+.+|++++|.+-+.+|.-|.+-|.+..
T Consensus 6 IRnvpdev~~~L~~rAa~~G~S~~~ylr~~Le~~a 40 (73)
T 3h87_C 6 IRDIPDDVLASLDAIAARLGLSRTEYIRRRLAQDA 40 (73)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 34568888999999999999999988888776543
No 8
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=14.06 E-value=79 Score=21.64 Aligned_cols=50 Identities=8% Similarity=0.126 Sum_probs=40.9
Q ss_pred CCCCCCCCCchhcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhHhCCC
Q psy3598 7 TNRSLLKSSVVALLAETHKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPI 59 (175)
Q Consensus 7 ~~~~~fP~pHTYirTpt~k~PvteYeaIREkaA~QkRdvEkALtrFlaKT~pt 59 (175)
..+.+|+....+++.+ .|.-+-+.|+.=+..+..++++|+..+|.-+.+.
T Consensus 13 ~~~~~~~~~v~~L~~M---FP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~ 62 (67)
T 2dhy_A 13 VRRLEFNQAMDDFKTM---FPNMDYDIIECVLRANSGAVDATIDQLLQMNLES 62 (67)
T ss_dssp CCCCCSHHHHHHHHHH---CSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCS
T ss_pred ccCCCHHHHHHHHHHH---CCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCC
Confidence 3455666667777776 8999999999999999999999999999876654
No 9
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=13.77 E-value=1.8e+02 Score=21.05 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCCCCCchhcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy3598 10 SLLKSSVVALLAETHKQPVTEYEAIREKAATQKRDLARALNKFIIK 55 (175)
Q Consensus 10 ~~fP~pHTYirTpt~k~PvteYeaIREkaA~QkRdvEkALtrFlaK 55 (175)
|+||+.+.+-+ ...+++|| ++|..||.+
T Consensus 73 P~lP~K~~~~~---------------~~~~e~Rr---~~Le~YL~~ 100 (141)
T 1kq6_A 73 PHLPAPKWFDG---------------QRAAENRQ---GTLTEYCST 100 (141)
T ss_dssp CCCCCCCCCCS---------------HHHHHHHH---HHHHHHHHH
T ss_pred CCCCCccccCC---------------HHHHHHHH---HHHHHHHHH
No 10
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=13.63 E-value=1.6e+02 Score=17.74 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHh
Q psy3598 39 ATQKRDLARALNKFIIKT 56 (175)
Q Consensus 39 A~QkRdvEkALtrFlaKT 56 (175)
++|++.+-++|++.+++.
T Consensus 14 ~eqk~~l~~~lt~~l~~~ 31 (64)
T 3abf_A 14 PEKKRELVRRLTEMASRL 31 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Done!