RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3598
(175 letters)
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Length = 197
Score = 33.2 bits (75), Expect = 0.023
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 86 IPKDQVFEEDEDNI---QASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEE 137
IP V + E +I SP +P V +++ +K E E +E + +EE
Sbjct: 143 IPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRNAARKAEASGEAADEADEADEE 197
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex,
multisubunit tethering complex, snare proteins; 2.60A
{Kluyveromyces lactis}
Length = 357
Score = 32.0 bits (72), Expect = 0.081
Identities = 11/72 (15%), Positives = 30/72 (41%)
Query: 86 IPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGNEEPE 145
IP+++ E + K +K + +KK E ++ E ++ + ++ +
Sbjct: 25 IPEEEYHELVSVQFKTDGGKYEKGEKQDLELSEKKTENGKDTESWGWNENQDSDEHDGWD 84
Query: 146 DTSNMVPDSEAI 157
+ ++ D+ I
Sbjct: 85 EELDIDVDNVPI 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.094
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 33/108 (30%)
Query: 44 DLARALNKFIIKTEPIEHIFDEADDR------FTLIVPKPEML-------------PYL- 83
D+ ++ I+ E I+HI D F ++ K E + +L
Sbjct: 40 DMPKS----ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 84 ------CLIPKD--QVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEE 123
P +++ E D + Q K V + K+ +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQ 142
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 195
Score = 30.4 bits (68), Expect = 0.23
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 86 IPKDQVFEEDEDNI---QASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDE 132
IP V E E +I SP P VK+K++KK + EEDE
Sbjct: 145 IPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGGGDGEEEDE 194
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 30.7 bits (69), Expect = 0.27
Identities = 17/83 (20%), Positives = 29/83 (34%)
Query: 93 EEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGNEEPEDTSNMVP 152
+ +E + + KK KKKSK ++E +E A +E E +
Sbjct: 22 DREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKER 81
Query: 153 DSEAIDNPYLRPVKYPQRIKSVK 175
D + D ++ K K
Sbjct: 82 DEDDEDGDGDGDGATGKKKKKKK 104
Score = 27.2 bits (60), Expect = 3.6
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 93 EEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGNEEPED 146
+ + + + KKK +KKK + E E ++E G +E
Sbjct: 16 GDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVAR 69
Score = 26.0 bits (57), Expect = 9.1
Identities = 13/66 (19%), Positives = 25/66 (37%)
Query: 93 EEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGNEEPEDTSNMVP 152
+ D D+ + + KK+ KKKK + GE++ +E +E
Sbjct: 17 DLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSAL 76
Query: 153 DSEAID 158
+ + D
Sbjct: 77 EDKERD 82
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 30.2 bits (67), Expect = 0.35
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 9/101 (8%)
Query: 76 KPEMLPYLCLIPKDQVFEEDEDNIQA-----SPQKKKKPTPVKKKSKKKKVEEDEEDGEE 130
K + Y P+ ++ + S + K K K +K EE+++ E
Sbjct: 789 KEDAFSY----PRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHE 844
Query: 131 DEAEEEEGEGNEEPEDTSNMVPDSEAIDNPYLRPVKYPQRI 171
++ +E E E N + + V RI
Sbjct: 845 EKEKERETNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRI 885
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 29.9 bits (68), Expect = 0.41
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 120 KVEEDEEDGEEDEAEEEEGEGNEEPED 146
+++ E+ E+ E + P +
Sbjct: 343 RLDASLEEPEDVVDEAVAITSDAPPAE 369
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 29.5 bits (65), Expect = 0.63
Identities = 9/74 (12%), Positives = 19/74 (25%)
Query: 87 PKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGNEEPED 146
++ E+ E AS + + + + E E +P+
Sbjct: 57 ARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKS 116
Query: 147 TSNMVPDSEAIDNP 160
EA +
Sbjct: 117 DKETEAKPEATNQG 130
Score = 26.5 bits (57), Expect = 5.9
Identities = 8/52 (15%), Positives = 15/52 (28%)
Query: 93 EEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGNEEP 144
E+ ++ + S + E E + EE+ E E
Sbjct: 56 HARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAET 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.3
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 18/86 (20%)
Query: 27 PVT-----EYEAIREKAATQKRDLARALNKFIIKTE----PIEHIFDEADDRFTLIVPKP 77
PV + + +DL + N + P+ FD +D R V
Sbjct: 422 PVASPFHSHL--LVPASDLINKDLVK--NNVSFNAKDIQIPVYDTFDGSDLR----VLSG 473
Query: 78 EMLPYLC-LIPKDQVFEEDEDNIQAS 102
+ + I + V E +A+
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKAT 499
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 28.1 bits (63), Expect = 1.3
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 114 KKSKKKKVEEDEEDGEEDEAEEEEGEGNEEPEDTSNMVPDSEA 156
++K+ +D+ED ++ + + N +N D E
Sbjct: 241 DFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQEG 283
Score = 26.9 bits (60), Expect = 3.6
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 110 TPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGNEEPEDTSNMVPDSEAIDNP 160
+ + K V+ D D A++E ++E ED S+ V S+ + P
Sbjct: 220 SLSETNGLHKFVKGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAP 270
Score = 26.9 bits (60), Expect = 3.7
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 118 KKKVEEDEEDGEEDEAEEEEGEGNEEPEDTSNMVPDSEAIDNP 160
+K++ D+++ E+D + P T+ + D
Sbjct: 244 QKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQEGDIH 286
Score = 26.2 bits (58), Expect = 6.7
Identities = 8/51 (15%), Positives = 19/51 (37%)
Query: 105 KKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGNEEPEDTSNMVPDSE 155
VK ++ ++ +++ D+ E+E+ N D N +
Sbjct: 224 TNGLHKFVKGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATN 274
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 28.2 bits (63), Expect = 1.6
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 94 EDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGE 139
+D + ++A Q KKK KK + E E E G+
Sbjct: 357 QDAE-LKALLQSSASRKTQKKKKKKASKTAENATSGETLEENEAGD 401
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA
complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Length = 438
Score = 28.0 bits (62), Expect = 1.8
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 112 VKKKSKKKKVEEDEEDGEEDEAEEEEGEGNEEPEDTSNMVPDSEA 156
+KK KKK + +E ++ +E E E + +P+ +
Sbjct: 1 MKKSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLPEPDP 45
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase,
isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Length = 327
Score = 27.5 bits (62), Expect = 2.3
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 120 KVEEDEEDGEEDEAEEEEGEGN 141
+ E+ D +A + GN
Sbjct: 306 RNAEESGDDNAVDANGADQTGN 327
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic
ribonucleotide reductase, nucleotide analogs, all enzyme
ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces
cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A*
3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Length = 888
Score = 27.6 bits (61), Expect = 2.8
Identities = 15/74 (20%), Positives = 23/74 (31%)
Query: 87 PKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGNEEPED 146
+ E S K + + K +V E + +E + E D
Sbjct: 807 SSSEASREASPAPTGSHSLTKGMAELNVQESKVEVPEVPAPTKNEEKAAPIVDDEETEFD 866
Query: 147 TSNMVPDSEAIDNP 160
N + AIDNP
Sbjct: 867 IYNSKVIACAIDNP 880
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A
{Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B
2qna_B
Length = 365
Score = 27.5 bits (60), Expect = 2.8
Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 5/76 (6%)
Query: 76 KPEMLPYLCLIPKDQVFEED-----EDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEE 130
+P M+ + + +Q + KK K+ K E+ E
Sbjct: 283 RPYMVSDVLGVAVPAGPLTTKPDYAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELE 342
Query: 131 DEAEEEEGEGNEEPED 146
+ + + P+
Sbjct: 343 HLSTPKLKGSSHSPDH 358
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 27.5 bits (60), Expect = 2.8
Identities = 7/51 (13%), Positives = 16/51 (31%)
Query: 93 EEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGNEE 143
EE + ED+ D ++ E ++ + ++E
Sbjct: 288 EEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDE 338
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 27.0 bits (60), Expect = 2.9
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 119 KKVEEDEEDGEEDEAEEEEGEGNEEPEDTSNMVPDSEA 156
+ E+ E + E E+ + V + +A
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDA 212
Score = 27.0 bits (60), Expect = 3.3
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 93 EEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGNEEPEDTSN 149
EE E +QA+ + + V E + EE +AE E + ED S+
Sbjct: 179 EELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSD 235
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB
prenylation, post-translational modification, protein
binding/protein transport complex; HET: GER GDP PG4;
2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB:
1vg9_A* 1ltx_R*
Length = 650
Score = 26.8 bits (58), Expect = 4.3
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 60 EHIFDEADDRFTLIVPKPEMLPYLCLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKK 119
++ +A+ F I P + P P+D V + D + T + +
Sbjct: 582 DNAVKQAETLFQQICPNEDFCP-APPNPEDIVLDGDSSQQEVPESSVTPETNSETPKEST 640
Query: 120 KVEEDEEDGE 129
+ EE E
Sbjct: 641 VLGNPEEPSE 650
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 26.0 bits (56), Expect = 4.9
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 91 VFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGNEEPED 146
V ED+ ++K K++ + E+++ED ++D+ ++E+ E EE D
Sbjct: 20 VVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTD 75
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 5.1
Identities = 8/49 (16%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 99 IQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEE-EGEGNEEPED 146
I + + ++P ++K ++++ E D E+E + ++ E+
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 122
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 26.4 bits (59), Expect = 5.3
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 118 KKKVEEDEEDGEEDEAEEEEGEGNEEPEDTSNMVPDSE 155
K E EE EE+EA +EE E +++ + +
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKK 252
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus
musculus} PDB: 2dg2_A
Length = 265
Score = 26.1 bits (58), Expect = 6.9
Identities = 9/59 (15%), Positives = 16/59 (27%)
Query: 16 VVALLAETHKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIV 74
V A + T Y R + + I + D+ + L+V
Sbjct: 97 VCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVV 155
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 25.4 bits (56), Expect = 7.0
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 95 DEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEE 137
+ASP K K +++ D+ + + E EEEE
Sbjct: 93 KHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE 135
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 26.0 bits (58), Expect = 7.6
Identities = 4/34 (11%), Positives = 14/34 (41%)
Query: 104 QKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEE 137
++K+P ++ K+ E + + ++
Sbjct: 467 VQRKRPGSPAAQASKRASEMACQQPTQPPDADQT 500
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 26.0 bits (58), Expect = 7.7
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 16 VVALLAETHKQPVTEYEAIREKAATQK-RDLARALNKFIIKTEPIEHIFDEADD 68
+ + + +E+ A ++ LA N+++ + P E D
Sbjct: 430 LYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAKQEGRD 483
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 25.6 bits (56), Expect = 8.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 111 PVKKKSKKKKVEEDEEDGEEDEAEEEEGEGNEEPE 145
P +KK K V ++ EE A++ GE EP
Sbjct: 221 PGRKKWVKPSVAKNLARAEEYFAKKRGGETASEPA 255
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 25.8 bits (56), Expect = 9.9
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 17/67 (25%)
Query: 90 QVFEEDEDNIQASPQKKKKPTPVKKKSKK-----------------KKVEEDEEDGEEDE 132
++++ I+A P K K+ + + G +D+
Sbjct: 238 SLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDD 297
Query: 133 AEEEEGE 139
EEE+ E
Sbjct: 298 DEEEDDE 304
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.127 0.342
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,571,089
Number of extensions: 150504
Number of successful extensions: 651
Number of sequences better than 10.0: 1
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 136
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 54 (24.5 bits)