RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3598
         (175 letters)



>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein
           TCTP (histamine-releasing factor) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 172

 Score = 26.6 bits (59), Expect = 1.2
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 79  MLPYLCLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEG 138
           M+ Y  LI  D++F  D   I+            K  S+ +   +D   G    AE  EG
Sbjct: 1   MIIYRDLISHDEMFS-DIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEG 59

Query: 139 EGNEEPEDTSNMVPDS 154
           EG E    T   +  +
Sbjct: 60  EGTESTVITGVDIVMN 75


>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
           domain {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 323

 Score = 26.1 bits (56), Expect = 2.3
 Identities = 5/18 (27%), Positives = 9/18 (50%)

Query: 120 KVEEDEEDGEEDEAEEEE 137
           KVE +++  +   A E  
Sbjct: 304 KVEAEDKTEKLAAALEHH 321


>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313,
           C-terminal domain {Archaeon Pyrococcus horikoshii
           [TaxId: 53953]}
          Length = 132

 Score = 24.3 bits (53), Expect = 6.4
 Identities = 4/19 (21%), Positives = 7/19 (36%)

Query: 147 TSNMVPDSEAIDNPYLRPV 165
            S +  D +    P   P+
Sbjct: 97  VSEITEDFKMFPVPVYYPL 115


>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 23.6 bits (51), Expect = 9.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 121 VEEDEEDGEEDEAEEEEGEGNEEPEDTSNMVPDSEAIDNPYL 162
           VEEDE   + + AEEE  E  E          + + I  PY+
Sbjct: 16  VEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYM 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.306    0.127    0.342 

Gapped
Lambda     K      H
   0.267   0.0555    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 618,109
Number of extensions: 29363
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 25
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 50 (23.4 bits)