BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3599
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
+AA LK+ D LK HK+ KY + + F S G +V+GSED+ V
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 261
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
Y ++Q+KE V KLQGH V+ + + E+++A++ + I LW +
Sbjct: 262 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 122 IVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
+AA LK+ D LK HK+ KY + + F S G +V+GSED+ V
Sbjct: 230 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 283
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
Y ++Q+KE V KLQGH V+ + + E+++A++ + I LW +
Sbjct: 284 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 144 IVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
+AA LK+ D LK HK+ KY + + F S G +V+GSED+ V
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNMV 264
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
Y ++Q+KE V KLQGH V+ + + E+++A++ + I LW +
Sbjct: 265 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 125 IVSGSFDESVRIWDVKTGM---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
+AA LK+ D LK HK+ KY + + F S G +V+GSED+ V
Sbjct: 225 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 278
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
Y ++Q+KE V KLQGH V+ + + E+++A++ + I LW +
Sbjct: 279 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 139 IVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
+AA LK+ D LK HK+ KY + + F S G +V+GSED+ V
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 261
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
Y ++Q+KE V KLQGH V+ + + E+++A++ + I LW +
Sbjct: 262 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 122 IVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
+AA LK+ D LK HK+ KY + + F S G +V+GSED+ V
Sbjct: 204 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 257
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
Y ++Q+KE V KLQGH V+ + + E+++A++ + I LW +
Sbjct: 258 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 118 IVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
+AA LK+ D LK HK+ KY + + F S G +V+GSED+ V
Sbjct: 232 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 285
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
Y ++Q+KE V KLQGH V+ + + E+++A++ + I LW +
Sbjct: 286 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 146 IVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
+AA LK+ D LK HK+ KY + + F S G +V+GSED+ V
Sbjct: 209 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 262
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
Y ++Q+KE V KLQGH V+ + + E+++A++ + I LW +
Sbjct: 263 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 123 IVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
+AA LK+ D LK HK+ KY + + F S G +V+GSED+ V
Sbjct: 207 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 260
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
Y ++Q+KE V KLQGH V+ + + E+++A++ + I LW +
Sbjct: 261 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 121 IVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
+AA LK+ D LK HK+ KY + + F S G +V+GSED+ V
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 267
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
Y ++Q+KE V KLQGH V+ + + E+++A++ + I LW +
Sbjct: 268 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 128 IVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
+AA LK+ D LK HK+ KY + + F S G +V+GSED+ V
Sbjct: 213 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 266
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
Y ++Q+KE V KLQGH V+ + + E+++A++ + I LW +
Sbjct: 267 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 127 IVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
+AA LK+ D LK HK+ KY + + F S G +V+GSED+ V
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 267
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
Y ++Q+KE V KLQGH V+ + + E+++A++ + I LW +
Sbjct: 268 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 128 IVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 131 KFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC 190
K HK+ KY + + F S G +V+GSED+ VY ++Q+KE V KLQGH
Sbjct: 231 KTYTGHKNEKYCIFANF----SVTGGKWIVSGSEDNMVYIWNLQTKE---IVQKLQGHTD 283
Query: 191 PVLGVSFNYDESLLATSDYQG--LIILWSRE 219
V+ + + E+++A++ + I LW +
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 125 IVSGSFDESVRIWDVKTGM---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
+AA LK+ D LK HK+ KY + + F S G +V+GSED+ V
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 267
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
Y ++Q+KE V KLQGH V+ + + E+++A++ + I LW +
Sbjct: 268 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 128 IVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
+AA LK+ D LK HK+ KY + + F S G +V+GSED+ V
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 264
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQG--LIILWSRE 219
Y ++Q+KE V KLQGH V+ + + E+++A++ + I LW +
Sbjct: 265 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 125 IVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
+AA LK+ D LK HK+ KY + + F S G +V+GSED+ V
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 264
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATS 207
Y ++Q+KE V KLQGH V+ + + E+++A++
Sbjct: 265 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASA 300
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 125 IVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 109 IAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCV 168
+AA LK+ D LK HK+ KY + + F S G +V+GSED+ V
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANF----SVTGGKWIVSGSEDNLV 264
Query: 169 YFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATS 207
Y ++Q+KE V KLQGH V+ + + E+++A++
Sbjct: 265 YIWNLQTKE---IVQKLQGHTDVVISTACHPTENIIASA 300
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+V+GS D V D+++ + + L H+ PV V FN D SL+ +S Y GL +W
Sbjct: 125 IVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDE--SLLATSDYQGLI 213
G + T S D + +++ + HK ++ L GH PV V + + + ++LA+ Y G +
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 214 ILWSRE 219
++W E
Sbjct: 80 LIWKEE 85
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDE--SLLATSDYQGLI 213
G + T S D + +++ + HK ++ L GH PV V + + + ++LA+ Y G +
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81
Query: 214 ILWSRE 219
++W E
Sbjct: 82 LIWKEE 87
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDE--SLLATSDYQGLI 213
G + T S D + +++ + HK ++ L GH PV V + + + ++LA+ Y G +
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 214 ILWSRE 219
++W E
Sbjct: 80 MIWKEE 85
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDE--SLLATSDYQGLI 213
G + T S D + +++ + HK ++ L GH PV V + + + ++LA+ Y G +
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 214 ILWSRE 219
++W E
Sbjct: 80 LIWKEE 85
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 132 FNVNHKSSKYQV--RSTFCPIMSFR-EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGH 188
F V +Y + R F +++ +G + +G+ D + DI + + ++ L+GH
Sbjct: 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK---LLHTLEGH 205
Query: 189 ACPVLGVSFNYDESLLATSDYQGLI 213
A P+ ++F+ D LL T+ G I
Sbjct: 206 AMPIRSLTFSPDSQLLVTASDDGYI 230
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 143 VRS-TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDE 201
+RS TF P + +VT S+D + D+Q H N L GHA VL V+F D+
Sbjct: 209 IRSLTFSP-----DSQLLVTASDDGYIKIYDVQ---HANLAGTLSGHASWVLNVAFCPDD 260
Query: 202 S 202
+
Sbjct: 261 T 261
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 134 VNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVL 193
H SS + V F P +G + + S+D V + ++ +H + L GH+ V
Sbjct: 300 TGHSSSVWGV--AFSP-----DGQTIASASDDKTVKLWN-RNGQH---LQTLTGHSSSVW 348
Query: 194 GVSFNYDESLLATSDYQGLIILWSRE 219
GV+F+ D +A++ + LW+R
Sbjct: 349 GVAFSPDGQTIASASDDKTVKLWNRN 374
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 134 VNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVL 193
H SS + V F P +G + + S+D V + + + L GH+ V
Sbjct: 136 TGHSSSVWGV--AFSP-----DGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVW 184
Query: 194 GVSFNYDESLLATSDYQGLIILWSRE 219
GV+F+ D +A++ + LW+R
Sbjct: 185 GVAFSPDGQTIASASDDKTVKLWNRN 210
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 134 VNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVL 193
H SS + V F P +G + + S+D V + + + L GH+ V
Sbjct: 54 TGHSSSVWGV--AFSP-----DGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVR 102
Query: 194 GVSFNYDESLLATSDYQGLIILWSRE 219
GV+F+ D +A++ + LW+R
Sbjct: 103 GVAFSPDGQTIASASDDKTVKLWNRN 128
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 134 VNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVL 193
H SS + V F P +G + + S+D V + + + L GH+ V
Sbjct: 177 TGHSSSVWGV--AFSP-----DGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVR 225
Query: 194 GVSFNYDESLLATSDYQGLIILWSRE 219
GV+F+ D +A++ + LW+R
Sbjct: 226 GVAFSPDGQTIASASDDKTVKLWNRN 251
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 134 VNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVL 193
H SS + V F P +G + + S+D V + + + L GH+ V
Sbjct: 341 TGHSSSVWGV--AFSP-----DGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVR 389
Query: 194 GVSFNYDESLLATSDYQGLIILWSRE 219
GV+F+ D +A++ + LW+R
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLWNRN 415
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 147 FCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLAT 206
F P +G + + S+D V + + + L GH+ V GV+F+ D+ +A+
Sbjct: 393 FSP-----DGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDDQTIAS 443
Query: 207 SDYQGLIILWSRE 219
+ + LW+R
Sbjct: 444 ASDDKTVKLWNRN 456
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 151 MSFR-EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY 209
++FR +G + + S+D V + + + L GH+ V GV+F+ D +A++
Sbjct: 268 VAFRPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 323
Query: 210 QGLIILWSRE 219
+ LW+R
Sbjct: 324 DKTVKLWNRN 333
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 147 FCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLAT 206
F P +G + + S+D V + + + L GH+ V GV+F+ D +A+
Sbjct: 24 FSP-----DGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 74
Query: 207 SDYQGLIILWSRE 219
+ + LW+R
Sbjct: 75 ASDDKTVKLWNRN 87
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 147 FCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLAT 206
F P +G + + S+D V + + + L GH+ V GV+F+ D +A+
Sbjct: 106 FSP-----DGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 156
Query: 207 SDYQGLIILWSRE 219
+ + LW+R
Sbjct: 157 ASDDKTVKLWNRN 169
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 147 FCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLAT 206
F P +G + + S+D V + + + L GH+ V GV+F+ D +A+
Sbjct: 475 FSP-----DGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 525
Query: 207 SDYQGLIILWSRE 219
+ + LW+R
Sbjct: 526 ASDDKTVKLWNRN 538
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 147 FCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLAT 206
F P +G + + S+D V + + + L GH+ V GV+F+ D +A+
Sbjct: 516 FSP-----DGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 566
Query: 207 SDYQGLIILW 216
+ + LW
Sbjct: 567 ASSDKTVKLW 576
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 147 FCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLAT 206
F P +G + + S+D V + + + L GH+ V GV+F D +A+
Sbjct: 229 FSP-----DGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVNGVAFRPDGQTIAS 279
Query: 207 SDYQGLIILWSRE 219
+ + LW+R
Sbjct: 280 ASDDKTVKLWNRN 292
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 134 VNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVL 193
H SS + V F P + + + S+D V + + + L GH+ V
Sbjct: 423 TGHSSSVWGV--AFSP-----DDQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVR 471
Query: 194 GVSFNYDESLLATSDYQGLIILWSRE 219
GV+F+ D +A++ + LW+R
Sbjct: 472 GVAFSPDGQTIASASDDKTVKLWNRN 497
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 183 NKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSRE 219
N+L+ H+ V GV+F+ D +A++ + LW+R
Sbjct: 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 46
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 147 FCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLAT 206
F P + + +V+G D+ V D+ + V L+GH V V+ + D SL A+
Sbjct: 160 FSPSL---DAPVIVSGGWDNLVKVWDLATGR---LVTDLKGHTNYVTSVTVSPDGSLCAS 213
Query: 207 SDYQGLIILWSREKHE 222
SD G+ LW K E
Sbjct: 214 SDKDGVARLWDLTKGE 229
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDE--SLLATSDYQGLI 213
G T S D + +++ + HK ++ L GH PV V + + + ++LA+ Y G +
Sbjct: 21 GKRXATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 214 ILWSRE 219
+W E
Sbjct: 80 XIWKEE 85
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 143 VRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDES 202
R F P+ S +V+ SED+ + D ++ + + L+GH V +SF++
Sbjct: 112 TRVIFHPVFS-----VMVSASEDATIKVWDYETGDFERT---LKGHTDSVQDISFDHSGK 163
Query: 203 LLATSDYQGLIILWSREKHE 222
LLA+ I LW + E
Sbjct: 164 LLASCSADMTIKLWDFQGFE 183
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 28/137 (20%)
Query: 94 SWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSF 153
+W+S + +LV + AV + ++L+KE L KF +KY+ + F
Sbjct: 101 AWVSEKG----ILVASDSGAVELWEILEKESL--LVNKF------AKYEHDDIVKTLSVF 148
Query: 154 REGACVVTGSEDSCVYFLDIQSK-------EHKNAVNKLQGHACPVLGVSFNYDESLLAT 206
+G V+G +D V D+ K H + VN + ACP +++ +
Sbjct: 149 SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA--ACP-------GKDTIFLS 199
Query: 207 SDYQGLIILWSREKHEP 223
G I+LW K +P
Sbjct: 200 CGEDGRILLWDTRKPKP 216
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 136 HKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV 195
H ++ + C + + TGS D + D+ KE +N + GH V
Sbjct: 699 HTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNT---MFGHTNSVNHC 755
Query: 196 SFNYDESLLATSDYQGLIILW 216
F+ D+ LLA+ G + LW
Sbjct: 756 RFSPDDKLLASCSADGTLKLW 776
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 182 VNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWS 217
+++L+GH V +F+ D +LLAT D G I +W+
Sbjct: 1126 LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWN 1161
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+ TGS D +FL + K N + GH V F+ D+ LLA+ G + LW
Sbjct: 723 LATGSND---FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 180 NAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWS 217
+ +++L+GH V +F+ D LLAT D G I +W+
Sbjct: 1125 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
+ TGS D +FL + K N + GH V F+ D+ LLA+ G + LW
Sbjct: 716 LATGSND---FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 25/155 (16%)
Query: 85 CPITCLSWRSWISREARDPTLLVNIAANAVC-ILKVLDKEGAVQLKR-----KFNVNHKS 138
C +T LS ++ A P IAA ++ ++V D E ++R + HK
Sbjct: 199 CSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD 257
Query: 139 SKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV--- 195
S Y V T R+G VV+GS D V ++Q+ +K+ C V +
Sbjct: 258 SVYSVVFT-------RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 310
Query: 196 -------SFNYDESLLATSDYQGLIILWSREKHEP 223
+ DE +L+ S +G ++ W ++ P
Sbjct: 311 DFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNP 344
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 161 TGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
+GS ++ D++ H+ + LQGH+ V G+++ D LA+ ++ +W
Sbjct: 191 SGSRSGAIHHHDVRIANHQ--IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248
Query: 221 HEP 223
P
Sbjct: 249 SIP 251
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 155 EGACVVTGSEDSCVYFLDI-QSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLI 213
+G + T S D V+ + +S E ++ LQ H+ V V ++ E+LLA+S Y +
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTV 177
Query: 214 ILW 216
+W
Sbjct: 178 RIW 180
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 127 QLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQ 186
+L+ F ++ S K + T C S +G +VTG E+ + + + +N L
Sbjct: 93 ELRHPFALSASSGKTTNQVT-CLAWS-HDGNSIVTGVENGELRLWN----KTGALLNVLN 146
Query: 187 GHACPVLGVSFNYDESLLATSDYQGLIILWS 217
H P++ V +N D + + + D + + ILW+
Sbjct: 147 FHRAPIVSVKWNKDGTHIISMDVENVTILWN 177
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 161 TGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
+GS ++ D++ EH V L GH+ V G+ + D LA+ L+ +W
Sbjct: 215 SGSRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 272
Query: 221 HE 222
E
Sbjct: 273 GE 274
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 161 TGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
+GS ++ D++ EH V L GH+ V G+ + D LA+ L+ +W
Sbjct: 204 SGSRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261
Query: 221 HE 222
E
Sbjct: 262 GE 263
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 179 KNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
K AV+ A + V FN+ LLAT D G ++++ +E+
Sbjct: 18 KGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQ 59
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 161 TGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
+GS ++ D++ EH V L GH+ V G+ + D LA+ L+ +W
Sbjct: 124 SGSRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181
Query: 221 HE 222
E
Sbjct: 182 GE 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,038,189
Number of Sequences: 62578
Number of extensions: 208335
Number of successful extensions: 588
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 126
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)