RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3599
(223 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 50.9 bits (120), Expect = 3e-08
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 3/97 (3%)
Query: 121 DKEGAVQLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKN 180
D + R S + + + G ++ G +D D +
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR-- 304
Query: 181 AVNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWS 217
L GH V + D +AT + + +W+
Sbjct: 305 -AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.5 bits (80), Expect = 0.004
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 3/74 (4%)
Query: 148 CPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATS 207
+ + V+G+ D+ D++ GH + + F + + AT
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMC---RQTFTGHESDINAICFFPNGNAFATG 244
Query: 208 DYQGLIILWSREKH 221
L+
Sbjct: 245 SDDATCRLFDLRAD 258
Score = 33.9 bits (76), Expect = 0.012
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIIL 215
G TGS+D+ L + + C + VSF+ LL +
Sbjct: 238 GNAFATGSDDATCR-LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 216 WSREKHEP 223
W K +
Sbjct: 297 WDALKADR 304
Score = 31.2 bits (69), Expect = 0.079
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 185 LQGHACPVLGVSFNYDESLLATSDYQGLIILW 216
L+GH + + + D LL ++ G +I+W
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW 82
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 48.6 bits (114), Expect = 1e-07
Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 150 IMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY 209
++ G +++ ++D + D ++K + L H V + F+ + T
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKRC---MKTLNAHEHFVTSLDFHKTAPYVVTGSV 309
Query: 210 QGLIILW 216
+ +W
Sbjct: 310 DQTVKVW 316
Score = 44.0 bits (102), Expect = 5e-06
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 131 KFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC 190
+ S + S + G +++GS D + D+ + + L GH
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC---LMTLVGHDN 248
Query: 191 PVLGVSFNYDESLLATSDYQGLIILWSREKHEP 223
V GV F+ + + + +W +
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281
Score = 38.6 bits (88), Expect = 3e-04
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 184 KLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP 223
L GH PV V F+ S++ ++ I +W E +
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF 51
Score = 25.9 bits (55), Expect = 4.5
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 136 HKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV 195
H+S +V F P + +V+ SED+ + D ++ + L+GH V +
Sbjct: 16 HRSPVTRVI--FHP-----VFSVMVSASEDATIKVWDYETGDF---ERTLKGHTDSVQDI 65
Query: 196 SFNY 199
SF++
Sbjct: 66 SFDH 69
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 48.3 bits (113), Expect = 2e-07
Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 17/142 (11%)
Query: 86 PITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQVRS 145
+ + + RD +V+ + + L L + N Y
Sbjct: 256 SVYSVVF-------TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308
Query: 146 TFCPIMSF-REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV------SFN 198
F ++ + +++GS+D V F D +S + LQGH V+ V S
Sbjct: 309 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP---LLMLQGHRNSVISVAVANGSSLG 365
Query: 199 YDESLLATSDYQGLIILWSREK 220
+ ++ AT +W +K
Sbjct: 366 PEYNVFATGSGDCKARIWKYKK 387
Score = 38.6 bits (88), Expect = 4e-04
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 147 FCPIMSFREGACVVTGSEDSCVYFLDIQSKEH----KNAVNKLQGHACPVLGVSFNYDES 202
+S +G + GS D V D ++ + GH V V F D
Sbjct: 208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 267
Query: 203 LLATSDYQGLIILWSREKHEP 223
+ + + LW+ +
Sbjct: 268 SVVSGSLDRSVKLWNLQNANN 288
Score = 35.5 bits (80), Expect = 0.004
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 154 REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHAC---------PVLGVSFNYDESLL 204
R+G VV+GS D V ++Q+ +K+ C VL V+ ++ +
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323
Query: 205 ATSDYQGLIILWSREKHEP 223
+ ++ W ++ P
Sbjct: 324 LSGSKDRGVLFWDKKSGNP 342
Score = 25.9 bits (55), Expect = 4.8
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 184 KLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP 223
K H V V F+ D LAT ++
Sbjct: 57 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL 95
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 47.2 bits (110), Expect = 5e-07
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 149 PIMSF---REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLA 205
PI ++ + + V+ + + V++L+ H V GV + D + +
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ-VHELKEHNGQVTGVDWAPDSNRIV 67
Query: 206 TSDYQGLIILWSREKH 221
T +W+ +
Sbjct: 68 TCGTDRNAYVWTLKGR 83
Score = 30.2 bits (66), Expect = 0.17
Identities = 4/33 (12%), Positives = 15/33 (45%)
Query: 191 PVLGVSFNYDESLLATSDYQGLIILWSREKHEP 223
P+ ++N D + +A + ++ + ++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW 41
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 43.6 bits (101), Expect = 8e-06
Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIIL 215
G V+ +D+ + + VL + D+ + T +
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASI----FQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332
Query: 216 WS 217
+
Sbjct: 333 YE 334
Score = 30.9 bits (68), Expect = 0.12
Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 10/97 (10%)
Query: 127 QLKRKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQ 186
++ +NH V T V TG CV DI +K+ V++L
Sbjct: 41 HARQINTLNHGEVVCAV--TISN-----PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD 92
Query: 187 --GHACPVLGVSFNYDESLLATSDYQGLIILWSREKH 221
+ D L + +W
Sbjct: 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129
Score = 28.6 bits (62), Expect = 0.64
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 188 HACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP 223
H VL + F Y ++ L+ W
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 42.3 bits (97), Expect = 2e-05
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 132 FNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACP 191
F + ++ + E V TGS D+ ++ ++ + L H
Sbjct: 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI--IKALNAHKDG 260
Query: 192 VLGVSFNYDESLLATSDYQGLIILWS 217
V + + +L+++ I W+
Sbjct: 261 VNNLLWETPSTLVSSGA-DACIKRWN 285
Score = 30.7 bits (67), Expect = 0.13
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 182 VNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREK 220
+ + GH + ++ N L + Y G I+ WS
Sbjct: 6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS 40
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 39.1 bits (89), Expect = 2e-04
Identities = 9/79 (11%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 141 YQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD 200
+ + +G + + S D + ++ + + + + LG+ +
Sbjct: 235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--T 292
Query: 201 ESLLATSDYQGLIILWSRE 219
+ L + G I + E
Sbjct: 293 KQALVSISANGFINFVNPE 311
Score = 33.7 bits (75), Expect = 0.014
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIIL 215
G + + + VY + + S H+ + A+ D G + +
Sbjct: 29 GDKIQYCN-GTSVYTVPVGSL---TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRI 84
Query: 216 WSREKH 221
W +
Sbjct: 85 WDTTQT 90
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 38.4 bits (87), Expect = 4e-04
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 185 LQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP 223
GH + +S + D L ++D +G I W
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS 46
Score = 36.9 bits (83), Expect = 0.001
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 132 FNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACP 191
F + H +S + + + + TGS D+ V ++ + HA
Sbjct: 212 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH-PIIIKGAHAMS 270
Query: 192 VLGVSFNYDESLLATSDYQGLIILWS 217
+ +E+ + ++ I W+
Sbjct: 271 SVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 28.8 bits (62), Expect = 0.47
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 2/65 (3%)
Query: 156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLIIL 215
G + + + + DI + HA + G+ L S L ++
Sbjct: 24 GKTLFSADAEGHINSWDISTGISNRVF--PDVHATMITGIKTTSKGDLFTVSWDDHLKVV 81
Query: 216 WSREK 220
+
Sbjct: 82 PAGGS 86
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 37.1 bits (84), Expect = 0.001
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 8/88 (9%)
Query: 135 NHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNA------VNKLQGH 188
+ + +V+G+ D + D+ + A + L H
Sbjct: 207 CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH 266
Query: 189 ACPVLGVSFNYDESLLATSDYQGLIILW 216
+ V + F DE + +S + I++W
Sbjct: 267 SGRVFRLQF--DEFQIVSSSHDDTILIW 292
Score = 31.4 bits (69), Expect = 0.065
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 179 KNAVNKLQGHACPVLGV-SFNYDESLLATSDYQGLIILWSREKHEP 223
++++ ++ + GV YD+ + + I +W + E
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC 47
Score = 27.5 bits (59), Expect = 1.2
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNY 199
+V+G D+ + D + E L GH VL + ++
Sbjct: 25 DQKIVSGLRDNTIKIWDKNTLEC---KRILTGHTGSVLCLQYDE 65
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 36.8 bits (83), Expect = 0.001
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 150 IMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDY 209
I +F ++ ++ +++S + +A + A + V+F +L+A +
Sbjct: 287 ITTFYVSDNILVSGSENQFNIYNLRSGKLVHAN--ILKDADQIWSVNFKGK-TLVAAVEK 343
Query: 210 QGLIILW 216
G L
Sbjct: 344 DGQSFLE 350
Score = 35.6 bits (80), Expect = 0.003
Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 155 EGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLII 214
E V+TG++D + D +K+ + +L GH V + + + L++ S + + +
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKF---LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78
Query: 215 LWSREKH 221
++
Sbjct: 79 WDIKKGC 85
Score = 29.9 bits (65), Expect = 0.22
Identities = 6/39 (15%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 185 LQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP 223
L+GH V+ ++++ + T +I ++ +
Sbjct: 8 LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKF 45
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 36.4 bits (82), Expect = 0.002
Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 7/67 (10%)
Query: 154 REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLATSDYQGLI 213
A E + D++++ K+ + + + D + G I
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDLRLSADRKTVMVRKDDGKI 338
Query: 214 ILWSREK 220
+ EK
Sbjct: 339 YTFPLEK 345
Score = 25.2 bits (53), Expect = 7.7
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 156 GACVVTGSEDSCVYFLDIQSKEHKNAVN 183
V+ +D +Y ++ E + V
Sbjct: 326 RKTVMVRKDDGKIYTFPLEKPEDERTVE 353
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 36.3 bits (82), Expect = 0.002
Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 12/131 (9%)
Query: 83 QDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRKFNVNHKSSKYQ 142
+C T +S S +LV + NA +K+ D + L+ N S
Sbjct: 207 GNCIHTLTGHQSLTSGMELKDNILV--SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 264
Query: 143 VRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQ--GHACPVLGVSFNYD 200
+ +T S+D V D+++ E + L+ G V + +
Sbjct: 265 CLQFNKNFV--------ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 316
Query: 201 ESLLATSDYQG 211
+ + A G
Sbjct: 317 KLVCAVGSRNG 327
Score = 30.9 bits (68), Expect = 0.12
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 146 TFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLA 205
T +G VV+GS D+ + D+ E N ++ L GH G+ +++L
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDV---ETGNCIHTLTGHQSLTSGMEL--KDNILV 231
Query: 206 TSDYQGLIILWSREKH 221
+ + + +W +
Sbjct: 232 SGNADSTVKIWDIKTG 247
Score = 29.8 bits (65), Expect = 0.22
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD 200
G +V+GS+D+ + + + + L GH V +
Sbjct: 27 GNRIVSGSDDNTLKVWSAVTGKC---LRTLVGHTGGVWSSQMRDN 68
Score = 29.8 bits (65), Expect = 0.23
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 185 LQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP 223
L+GH V+ + + + + + +WS +
Sbjct: 12 LKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKC 49
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 34.4 bits (77), Expect = 0.007
Identities = 6/50 (12%), Positives = 17/50 (34%)
Query: 156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLLA 205
+ ++ S D + + + + + P+L +F + L
Sbjct: 23 KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Score = 33.3 bits (74), Expect = 0.020
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 182 VNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP 223
V Q + + +SLL + + G + ++ +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK 45
Score = 27.9 bits (60), Expect = 1.1
Identities = 18/140 (12%), Positives = 42/140 (30%), Gaps = 5/140 (3%)
Query: 72 RLSKGKRLVLSQDCPITCLSWRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQLKRK 131
RL + + + R + V + D+ ++
Sbjct: 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235
Query: 132 FNVNHKSSKYQVRSTFCPIMSF---REGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGH 188
F + + P+ S + T D + ++Q+++ K +
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK--FN 293
Query: 189 ACPVLGVSFNYDESLLATSD 208
V+ ++ + + LATSD
Sbjct: 294 EDSVVKIACSDNILCLATSD 313
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 33.7 bits (75), Expect = 0.013
Identities = 7/71 (9%), Positives = 19/71 (26%), Gaps = 2/71 (2%)
Query: 147 FCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYD-ESLLA 205
+S+ + T D+ + D+ + + L V +
Sbjct: 254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW-TLDKQQLGNQQVGVVATGNGRII 312
Query: 206 TSDYQGLIILW 216
+ G + +
Sbjct: 313 SLSLDGTLNFY 323
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 32.5 bits (72), Expect = 0.036
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 159 VVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGV----------SFNYDESLLATSD 208
V+ S D + D + +++N +K H G+ ++ L+AT+
Sbjct: 27 TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86
Query: 209 YQGLIILWS 217
+ G ++ +
Sbjct: 87 FSGDLLFYR 95
Score = 30.2 bits (66), Expect = 0.17
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 156 GACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPV----LGVSFNYDESLLATSDYQG 211
G + + D + F D+++KE + L H + ++ + LA
Sbjct: 301 GETLCSAGWDGKLRFWDVKTKER---ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357
Query: 212 LIILWSREK 220
+ L +
Sbjct: 358 VKFLKKGWR 366
Score = 30.2 bits (66), Expect = 0.18
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 182 VNKLQGHACPVLGVSFNYDESLLATSDYQGLIILWSREKHEP 223
N + H + VS S + G + +W + +
Sbjct: 7 ANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDN 46
Score = 26.0 bits (55), Expect = 5.0
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 12/94 (12%)
Query: 136 HKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQSKE-------HKNAVNKLQGH 188
HKS + V E V T S + F I ++ K +
Sbjct: 59 HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMK 118
Query: 189 ACPVLGVSFNYDE-----SLLATSDYQGLIILWS 217
+ + L +D +G +W
Sbjct: 119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 152
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 29.0 bits (63), Expect = 0.48
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 4/79 (5%)
Query: 145 STFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLL 204
+ A + + D++ NA K V+ + D S +
Sbjct: 239 MDVFYFSTAVNPAKTRAFGAYNVLESFDLEK----NASIKRVPLPHSYYSVNVSTDGSTV 294
Query: 205 ATSDYQGLIILWSREKHEP 223
G + + E E
Sbjct: 295 WLGGALGDLAAYDAETLEK 313
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 28.2 bits (61), Expect = 0.92
Identities = 8/79 (10%), Positives = 22/79 (27%), Gaps = 4/79 (5%)
Query: 145 STFCPIMSFREGACVVTGSEDSCVYFLDIQSKEHKNAVNKLQGHACPVLGVSFNYDESLL 204
+ + + D++ ++ A N H V+F+ L
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN--LDH--TYYCVAFDKKGDKL 306
Query: 205 ATSDYQGLIILWSREKHEP 223
+ +++ + E
Sbjct: 307 YLGGTFNDLAVFNPDTLEK 325
>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA
{Escherichia coli [TaxId: 562]}
Length = 209
Score = 26.5 bits (58), Expect = 2.1
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 174 QSKEHKNAVNKLQGH--ACPVLGVSFNYDESLLATSDYQG 211
Q+ H +V +++ P + V F+ D+++L +S
Sbjct: 15 QAPIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFW 54
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 204
Score = 25.5 bits (56), Expect = 4.2
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Query: 66 LCDDLGRLSKGKRLVLS--QDCPITCLS-----WRSWISREARDP----TLLVNIAANAV 114
+C L R++ GK L D IT L W S I +E L+ I A AV
Sbjct: 64 ICQFLTRIAAGKTLDAQFENDERITPLESALMIWGS-IEKEHDKLHEEIQNLIKIQAIAV 122
Query: 115 CILKVLDKEGAVQLKRKF 132
C+ KE +R F
Sbjct: 123 CMENGNFKEAEEVFERIF 140
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 25.6 bits (56), Expect = 4.6
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 13/90 (14%)
Query: 66 LCDDLGRLSKGKRLVLS--QDCPITCLS-----WRSWISREARDPTL------LVNIAAN 112
+ L R+ +G+ L S + +T L + + LV AA
Sbjct: 61 VMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTEFTLTEAVVESSRKLVKEAAV 120
Query: 113 AVCILKVLDKEGAVQLKRKFNVNHKSSKYQ 142
+CI ++ + LK+ + + + K +
Sbjct: 121 IICIKNKEFEKASKILKKHMSKDPTTQKLR 150
>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS
(MetA) {Bacillus cereus [TaxId: 1396]}
Length = 281
Score = 25.4 bits (55), Expect = 6.7
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 130 RKFNVNHKSSKYQVRSTFCPIMSFREGACVVTGSEDSCVYFLDIQS-KEHKNAVNKLQGH 188
+ TF I + + ++TG+ + F ++ +E K + + +
Sbjct: 59 HLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTN 118
Query: 189 ACPVLGVSF 197
L + +
Sbjct: 119 VTSTLHICW 127
>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus
radiodurans [TaxId: 1299]}
Length = 187
Score = 25.2 bits (54), Expect = 6.7
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 92 WRSWISREARDPTLLVNIAANAVCILKVLDKEGAVQL-KRKFNVNH 136
W W+S R L + AV + + + V L R +
Sbjct: 13 WALWLSGRTRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPT 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.133 0.400
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 765,778
Number of extensions: 31758
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 62
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)