BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3602
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FMI|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase
Length = 458
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 107/418 (25%), Positives = 180/418 (43%), Gaps = 93/418 (22%)
Query: 36 DMFYHAYRAYMDNAYPADELMPLSCT-GRWRSQHTSRGDIDDTLGNFSXXXXXXXXXXXX 94
D+F HA++ Y A+ DEL P+S + W + D DT+
Sbjct: 16 DVFLHAWKGYRKFAWGHDELKPVSRSFSEWFGLGLTLIDALDTMWILGLR---------- 65
Query: 95 XXXXEEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWYT 154
+EFE A K +S+ ++F+ D+ V++FE+ IR+LGGLLS + L+ D +
Sbjct: 66 ----KEFEEARKWVSKKLHFEKDVDVNLFESTIRILGGLLSA------YHLSGDSL---- 111
Query: 155 GQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAA 214
L A+D G RL+PAF T + IP+ +N+ G+ + W+ D+ A ++ LE
Sbjct: 112 --FLRKAEDFGNRLMPAFRTPSKIPYSDVNIGTGV-AHPPRWTSDSTVAEVTSIQLEFRE 168
Query: 215 LSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRDS-GVGAGIDSYYE 273
LSRL+G F+ + + + L+ +N SG + +GA DSYYE
Sbjct: 169 LSRLTGDKKFQEAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYE 228
Query: 274 YCLKAYVLLGQDK------YLSRFDKHYSAVMKYISRGPLLIDVHMHKPQMTSRNFMDAL 327
Y LK ++ G+ + Y+ + + ++++ L + + +++ MD L
Sbjct: 229 YLLKQWIQGGKQETQLLEDYVEAIEGVRTHLLRHSEPSKLTFVGELAHGRFSAK--MDHL 286
Query: 328 LAFWPGLQ--------------------------------------VHWGQHP------- 342
+ F PG VH+ +P
Sbjct: 287 VCFLPGTLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHFNLYPQPGRRDV 346
Query: 343 ----------LRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPC-GYAAVRD 389
LRPE +ES ++LY+ TGD Y D G +L++ RVP GY+++ +
Sbjct: 347 EVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYSSINN 404
>pdb|1FO2|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With 1-Deoxymannojirimycin
pdb|1FO3|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With Kifunensine
Length = 460
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 107/418 (25%), Positives = 180/418 (43%), Gaps = 93/418 (22%)
Query: 36 DMFYHAYRAYMDNAYPADELMPLSCT-GRWRSQHTSRGDIDDTLGNFSXXXXXXXXXXXX 94
D+F HA++ Y A+ DEL P+S + W + D DT+
Sbjct: 16 DVFLHAWKGYRKFAWGHDELKPVSRSFSEWFGLGLTLIDALDTMWILGLR---------- 65
Query: 95 XXXXEEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWYT 154
+EFE A K +S+ ++F+ D+ V++FE+ IR+LGGLLS + L+ D +
Sbjct: 66 ----KEFEEARKWVSKKLHFEKDVDVNLFESTIRILGGLLSA------YHLSGDSL---- 111
Query: 155 GQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAA 214
L A+D G RL+PAF T + IP+ +N+ G+ + W+ D+ A ++ LE
Sbjct: 112 --FLRKAEDFGNRLMPAFRTPSKIPYSDVNIGTGV-AHPPRWTSDSTVAEVTSIQLEFRE 168
Query: 215 LSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRDS-GVGAGIDSYYE 273
LSRL+G F+ + + + L+ +N SG + +GA DSYYE
Sbjct: 169 LSRLTGDKKFQEAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYE 228
Query: 274 YCLKAYVLLGQDK------YLSRFDKHYSAVMKYISRGPLLIDVHMHKPQMTSRNFMDAL 327
Y LK ++ G+ + Y+ + + ++++ L + + +++ MD L
Sbjct: 229 YLLKQWIQGGKQETQLLEDYVEAIEGVRTHLLRHSEPSKLTFVGELAHGRFSAK--MDHL 286
Query: 328 LAFWPGLQ--------------------------------------VHWGQHP------- 342
+ F PG VH+ +P
Sbjct: 287 VCFLPGTLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHFNLYPQPGRRDV 346
Query: 343 ----------LRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPC-GYAAVRD 389
LRPE +ES ++LY+ TGD Y D G +L++ RVP GY+++ +
Sbjct: 347 EVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYSSINN 404
>pdb|1X9D|A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase
In Complex With Thio-Disaccharide Substrate Analogue
Length = 538
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/418 (25%), Positives = 180/418 (43%), Gaps = 93/418 (22%)
Query: 36 DMFYHAYRAYMDNAYPADELMPLSCT-GRWRSQHTSRGDIDDTLGNFSXXXXXXXXXXXX 94
D+F HA++ Y A+ DEL P+S + W + D DT+
Sbjct: 94 DVFLHAWKGYRKFAWGHDELKPVSRSFSEWFGLGLTLIDALDTMWILGLR---------- 143
Query: 95 XXXXEEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWYT 154
+EFE A K +S+ ++F+ D+ V++FE+ IR+LGGLLS + L+ D +
Sbjct: 144 ----KEFEEARKWVSKKLHFEKDVDVNLFESTIRILGGLLSA------YHLSGDSL---- 189
Query: 155 GQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAA 214
L A+D G RL+PAF T + IP+ +N+ G+ + W+ D+ A ++ LE
Sbjct: 190 --FLRKAEDFGNRLMPAFRTPSKIPYSDVNIGTGV-AHPPRWTSDSTVAEVTSIQLEFRE 246
Query: 215 LSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRDS-GVGAGIDSYYE 273
LSRL+G F+ + + + L+ +N SG + +GA DSYYE
Sbjct: 247 LSRLTGDKKFQEAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYE 306
Query: 274 YCLKAYVLLGQDK------YLSRFDKHYSAVMKYISRGPLLIDVHMHKPQMTSRNFMDAL 327
Y LK ++ G+ + Y+ + + ++++ L + + +++ MD L
Sbjct: 307 YLLKQWIQGGKQETQLLEDYVEAIEGVRTHLLRHSEPSKLTFVGELAHGRFSAK--MDHL 364
Query: 328 LAFWPGLQ--------------------------------------VHWGQHP------- 342
+ F PG VH+ +P
Sbjct: 365 VCFLPGTLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHFNLYPQPGRRDV 424
Query: 343 ----------LRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPC-GYAAVRD 389
LRPE +ES ++LY+ TGD Y D G +L++ RVP GY+++ +
Sbjct: 425 EVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYSSINN 482
>pdb|1NXC|A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals
The Molecular Basis For Substrate Specificity Among
Class I Enzymes (Family 47 Glycosidases)
Length = 478
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 125/261 (47%), Gaps = 34/261 (13%)
Query: 29 TLREES---RDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSXXX 85
T+RE+ ++M HA+ Y A+ +EL P+S G H+S GN
Sbjct: 16 TIREKRAKIKEMMTHAWNNYKRYAWGLNELKPISKEG-----HSS-----SLFGNIKGAT 65
Query: 86 XXXXXXXXXXXXXE-EFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLA--EY 142
+ EF+ A I + ++F+ + VSVFE NIR +GGLLS + L+ E
Sbjct: 66 IVDALDTLFIMGMKTEFQEAKSWIKKYLDFNVNAEVSVFEVNIRFVGGLLSAYYLSGEEI 125
Query: 143 FKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCT 202
F+ + A ++G +LLPAF+T +GIP +N++ G+ + W+ +
Sbjct: 126 FR--------------KKAVELGVKLLPAFHTPSGIPWALLNMKSGI-GRNWPWASGGSS 170
Query: 203 ACA--GTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRR 260
A GT+ LE LS LSG P+F K + L ++ L LN SG W +
Sbjct: 171 ILAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVL-NKLDKPEGLYPNYLNPSSGQWGQH 229
Query: 261 DSGVGAGIDSYYEYCLKAYVL 281
VG DS+YEY LKA+++
Sbjct: 230 HVSVGGLGDSFYEYLLKAWLM 250
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 343 LRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPCGYAAVRD 389
LRPE +E+ ++++ T DP Y + AL++H RV GY+ +RD
Sbjct: 369 LRPEVIETYMYMWRLTHDPKYRTWAWEAVEALESHCRVNGGYSGLRD 415
>pdb|4AYO|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31
pdb|4AYP|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With
Thiomannobioside
pdb|4AYQ|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With
Mannoimidazole
pdb|4AYR|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With Noeuromycin
Length = 447
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 164/412 (39%), Gaps = 77/412 (18%)
Query: 23 SKEEKMTLREESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFS 82
+ E+ L + R F A++ Y+ A+ DE+ P+S T R S D+ +L
Sbjct: 6 TPEDWKALAADVRSEFQWAWQGYVAKAWGKDEINPVSGTSR--SFFIEGHDLGLSL---- 59
Query: 83 XXXXXXXXXXXXXXXXEEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEY 142
EF+ + N++FD D VFETNIR++GGLLS H+ +
Sbjct: 60 ---VEALDTLWIMGLDAEFQAGVDWVKANLSFDVDGNAQVFETNIRLVGGLLSAHLASG- 115
Query: 143 FKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTT-GIPHGRINLRHGLKSKGLEWSVDTC 201
LL A+D+ RL AF + G+P +NLR G S +T
Sbjct: 116 -----------DPVLLAKARDLADRLAKAFEASPHGLPWRYVNLRTGAVS-----DPETN 159
Query: 202 TACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRD 261
A GT + E LS+L+G + A RAM R++ LM ++ +G + R+
Sbjct: 160 LAEIGTYLSEFGVLSQLTGERKYFDMAKRAMRHTLDRRSKIG-LMAANIHAMTGAFTSRN 218
Query: 262 SGVGAGIDSYYEYCLKAYVLLGQ-----------DKYLSRFDKHYSAVMKYISRGPLLID 310
+ + DS+YEY A+ L G D L+ K Y + + ++D
Sbjct: 219 ASIDVYADSFYEYLWDAWALFGDEDCKRWAVECVDAQLAHQAKRYDGRLWFP-----MVD 273
Query: 311 VHMHKPQMTSRNFM-----------------DALLAFWPGLQVHWGQHP----------- 342
T+++ + D LA + LQ +G P
Sbjct: 274 FETGAVTGTAQSELAAYYAGLLGQVGRKAQGDDYLASFTYLQATFGVIPESIDVTTGQPR 333
Query: 343 -----LRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPCGYAAVRD 389
LRPE+ ++ L+ DP Y + R ++ +R GY A++D
Sbjct: 334 RKHTGLRPEYPDACLNLWLIDRDPRYRRLAAIHYREMKATSRAAFGYTALKD 385
>pdb|1KKT|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KKT|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|A Chain A, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|B Chain B, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
Length = 511
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 28/254 (11%)
Query: 35 RDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSXXXXXXXXXXXX 94
++ F HA+ YM A+P DEL P+S G S++ D L
Sbjct: 45 KEAFQHAWNGYMKYAFPHDELTPVS-NGHADSRNGWGASAVDALST-------AVIMGKA 96
Query: 95 XXXXEEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVL----AEYFKLNTDLM 150
EH + + + SD VS+FET IR L G+LSG+ L A+ N DL+
Sbjct: 97 DVVNAILEHVADI---DFSKTSD-TVSLFETTIRYLAGMLSGYDLLQGPAKNLVDNQDLI 152
Query: 151 QWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMIL 210
LL+ ++++ L AF+T +G+P+ IN+ S G + + A GT++L
Sbjct: 153 D----GLLDQSRNLADVLKFAFDTPSGVPYNNINI----TSHGNDGATTNGLAVTGTLVL 204
Query: 211 EMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSD----LMGTVLNIDSGDWIRRDSGVGA 266
E LS L+G + + +A L + S+ L+G+ +NI+ G +
Sbjct: 205 EWTRLSDLTGDEEYAKLSQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNG 264
Query: 267 GIDSYYEYCLKAYV 280
G DS+YEY +K YV
Sbjct: 265 GDDSFYEYLIKMYV 278
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 333 GLQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPCGYAAVRD 389
G + G + LRPE +ES Y+ ++ TG Y D + A+ + R G+AAV D
Sbjct: 396 GFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFVAINSTCRTDSGFAAVSD 452
>pdb|2RI8|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI8|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI9|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
pdb|2RI9|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
Length = 475
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 28/254 (11%)
Query: 35 RDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSXXXXXXXXXXXX 94
++ F HA+ YM A+P DEL P+S G S++ D L
Sbjct: 10 KEAFQHAWNGYMKYAFPHDELTPVS-NGHADSRNGWGASAVDALST-------AVIMGKA 61
Query: 95 XXXXEEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVL----AEYFKLNTDLM 150
EH + + + SD VS+FET IR L G+LSG+ L A+ N DL+
Sbjct: 62 DVVNAILEHVADI---DFSKTSD-TVSLFETTIRYLAGMLSGYDLLQGPAKNLVDNQDLI 117
Query: 151 QWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMIL 210
LL+ ++++ L AF+T +G+P+ IN+ S G + + A GT++L
Sbjct: 118 D----GLLDQSRNLADVLKFAFDTPSGVPYNNINI----TSHGNDGATTNGLAVTGTLVL 169
Query: 211 EMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSD----LMGTVLNIDSGDWIRRDSGVGA 266
E LS L+G + + +A L + S+ L+G+ +NI+ G +
Sbjct: 170 EWTRLSDLTGDEEYAKLSQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNG 229
Query: 267 GIDSYYEYCLKAYV 280
G DS+YEY +K YV
Sbjct: 230 GDDSFYEYLIKMYV 243
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 333 GLQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPCGYAAVRD 389
G + G + LRPE +ES Y+ ++ TG Y D + A+ + R G+AAV D
Sbjct: 361 GFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFVAINSTCRTDSGFAAVSD 417
>pdb|1DL2|A Chain A, Crystal Structure Of Class I Alpha-1,2-Mannosidase From
Saccharomyces Cerevisiae At 1.54 Angstrom Resolution
Length = 511
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 128/287 (44%), Gaps = 30/287 (10%)
Query: 30 LREESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGD------IDDTLGNFSX 83
+R+ MF ++R Y + + D P+ T S + RG+ I D++
Sbjct: 5 MRDRIESMFLESWRDYSKHGWGYDVYGPIEHT----SHNMPRGNQPLGWIIVDSVDTL-- 58
Query: 84 XXXXXXXXXXXXXXXEEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYF 143
E + + I++ ++FD D V+VFET IR+LGGLLS + L++
Sbjct: 59 MLMYNSSTLYKSEFEAEIQRSEHWINDVLDFDIDAEVNVFETTIRMLGGLLSAYHLSDVL 118
Query: 144 KLNTDLMQWYTGQLLELAKDIGFRLLPAF-NTTTGIPHGRINLRHGLKSKGLEWSVDTCT 202
++ + L A D+G RL AF +T TGIP+ INL G K + T
Sbjct: 119 EVGNKTV------YLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQAVKNHADGGASST 172
Query: 203 ACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNI-------DSG 255
A T+ +E L+ L+G + R + L+ +++DL+ T + D+G
Sbjct: 173 AEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLY----KNNDLLNTYDGLVPIYTFPDTG 228
Query: 256 DWIRRDSGVGAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYI 302
+ G+ DS+YEY LK Y+L + Y + K + K++
Sbjct: 229 KFGASTIRFGSRGDSFYEYLLKQYLLTHETLYYDLYRKSMEGMKKHL 275
>pdb|1G6I|A Chain A, Crystal Structure Of The Yeast Alpha-1,2-Mannosidase With
Bound 1- Deoxymannojirimycin At 1.59 A Resolution
Length = 545
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 18/211 (8%)
Query: 100 EFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWYTGQLLE 159
E + + I++ ++FD D V+VFET IR+LGGLLS + L++ ++ + L
Sbjct: 109 EIQRSEHWINDVLDFDIDAEVNVFETTIRMLGGLLSAYHLSDVLEVGNKTV------YLN 162
Query: 160 LAKDIGFRLLPAF-NTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRL 218
A D+G RL AF +T TGIP+ INL G K + TA T+ +E L+ L
Sbjct: 163 KAIDLGDRLALAFLSTQTGIPYSSINLHSGQAVKNHADGGASSTAEFTTLQMEFKYLAYL 222
Query: 219 SGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNI-------DSGDWIRRDSGVGAGIDSY 271
+G + R + L+ +++DL+ T + D+G + G+ DS+
Sbjct: 223 TGNRTYWELVERVYEPLY----KNNDLLNTYDGLVPIYTFPDTGKFGASTIRFGSRGDSF 278
Query: 272 YEYCLKAYVLLGQDKYLSRFDKHYSAVMKYI 302
YEY LK Y+L + Y + K + K++
Sbjct: 279 YEYLLKQYLLTHETLYYDLYRKSMEGMKKHL 309
>pdb|1HCU|A Chain A, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|B Chain B, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|C Chain C, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|D Chain D, Alpha-1,2-Mannosidase From Trichoderma Reesei
Length = 503
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 16/179 (8%)
Query: 112 VNFDSDIVV----SVFETNIRVLGGLLSGHVL--AEYFKLNTDLMQWYTGQLLELAKDIG 165
+NF + V SVFETNIR LGGLLS + L + L T+ Q LL A+ +
Sbjct: 84 INFTTTAVANQGSSVFETNIRYLGGLLSAYDLLRGPFSSLATN--QTLVNSLLRQAQTLA 141
Query: 166 FRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFE 225
L AF T +G+P + ++ G + A G+++LE LS L+G P +
Sbjct: 142 NGLKVAFTTPSGVPDPTVFFNPTVRRSG---ASSNNVAEIGSLVLEWTRLSDLTGNPQYA 198
Query: 226 AKAHRAMDGLWAARNRDS---DLMGTVLNIDSGDWIRRDSGVGAGI-DSYYEYCLKAYV 280
A + L + L+GT ++ +G + SG +G+ DS+YEY +K Y+
Sbjct: 199 QLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGT-FQDSSGSWSGLMDSFYEYLIKMYL 256
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 343 LRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPCGYAAVRD 389
LRPE LES Y+ Y+ TGD + D+ L A++ R Y+++ D
Sbjct: 390 LRPETLESLYYAYRVTGDSKWQDLAWEALSAIEDACRAGSAYSSIND 436
>pdb|1B73|A Chain A, Glutamate Racemase From Aquifex Pyrophilus
pdb|1B74|A Chain A, Glutamate Racemase From Aquifex Pyrophilus
Length = 254
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 189 LKSKGLEWSVDTCTACAGTMILEMAALSRLS---GLPIFEAKAHRAMDGLWAARNRDSDL 245
LK KG++ V C + AL RL +P+F + L +RN+ +
Sbjct: 58 LKDKGVDIIVVACNTASAY------ALERLKKEINVPVFGVIEPGVKEALKKSRNKKIGV 111
Query: 246 MGTVLNIDSGDWIRRDSGVGAGIDSYYEYC 275
+GT + SG + R+ GA D + + C
Sbjct: 112 IGTPATVKSGAYQRKLEEGGA--DVFAKAC 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,655,438
Number of Sequences: 62578
Number of extensions: 473643
Number of successful extensions: 1050
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 995
Number of HSP's gapped (non-prelim): 30
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)