Query psy3602
Match_columns 390
No_of_seqs 155 out of 975
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 20:49:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00470 glycoside hydrolase f 100.0 7E-111 2E-115 870.2 32.6 351 11-389 55-468 (522)
2 KOG2431|consensus 100.0 1E-107 3E-112 800.1 22.8 337 27-389 91-491 (546)
3 KOG2429|consensus 100.0 7E-103 2E-107 788.2 29.0 353 25-389 28-418 (622)
4 PF01532 Glyco_hydro_47: Glyco 100.0 9E-104 2E-108 812.4 19.7 327 37-389 1-402 (452)
5 KOG2204|consensus 100.0 5.5E-99 1E-103 760.4 24.7 340 26-389 171-574 (625)
6 KOG2430|consensus 100.0 1.8E-94 3.8E-99 694.5 23.2 367 23-389 2-406 (587)
7 cd00249 AGE AGE domain; N-acyl 98.1 0.00014 3.1E-09 73.0 17.9 305 31-382 9-342 (384)
8 COG1331 Highly conserved prote 97.8 0.00033 7.2E-09 75.1 13.1 194 7-238 363-570 (667)
9 PF07944 DUF1680: Putative gly 97.7 0.00071 1.5E-08 71.8 15.2 193 127-371 128-331 (520)
10 cd00249 AGE AGE domain; N-acyl 97.6 0.0058 1.3E-07 61.4 18.3 217 126-380 55-277 (384)
11 KOG2204|consensus 97.2 0.011 2.4E-07 62.1 15.2 282 26-383 13-303 (625)
12 PF03663 Glyco_hydro_76: Glyco 97.2 0.0011 2.4E-08 67.4 7.8 151 132-304 96-259 (370)
13 cd04791 LanC_SerThrkinase Lant 97.0 0.069 1.5E-06 52.2 18.7 176 154-379 100-278 (321)
14 PF07470 Glyco_hydro_88: Glyco 96.6 0.07 1.5E-06 53.1 15.6 128 129-303 30-161 (336)
15 PF07944 DUF1680: Putative gly 96.4 0.029 6.2E-07 59.7 11.9 174 165-374 25-207 (520)
16 PTZ00470 glycoside hydrolase f 95.8 0.32 7E-06 51.8 15.8 232 29-286 242-500 (522)
17 PF01532 Glyco_hydro_47: Glyco 94.2 0.37 7.9E-06 50.4 10.6 143 84-239 213-391 (452)
18 cd04791 LanC_SerThrkinase Lant 93.5 0.54 1.2E-05 45.9 9.9 117 154-303 157-274 (321)
19 cd04434 LanC_like LanC-like pr 93.0 9.3 0.0002 37.0 19.5 179 154-376 117-300 (343)
20 cd04792 LanM-like LanM-like pr 92.6 8.6 0.00019 43.1 19.0 176 154-379 605-784 (825)
21 PF07221 GlcNAc_2-epim: N-acyl 92.4 0.6 1.3E-05 46.5 8.7 159 128-304 143-313 (346)
22 PF03663 Glyco_hydro_76: Glyco 91.9 1.2 2.6E-05 45.3 10.2 154 204-378 89-257 (370)
23 PF06917 Pectate_lyase_2: Peri 91.2 0.74 1.6E-05 48.4 7.8 104 155-259 13-129 (557)
24 PF07470 Glyco_hydro_88: Glyco 90.9 1.6 3.6E-05 43.3 9.8 90 134-247 77-169 (336)
25 COG3533 Uncharacterized protei 89.9 0.75 1.6E-05 48.5 6.5 73 129-233 136-208 (589)
26 PF05147 LANC_like: Lanthionin 89.0 0.66 1.4E-05 45.7 5.3 181 154-379 124-311 (355)
27 PF06662 C5-epim_C: D-glucuron 88.8 2 4.3E-05 40.0 7.9 135 212-368 39-185 (189)
28 COG1331 Highly conserved prote 88.8 6.6 0.00014 43.0 12.8 149 128-300 415-569 (667)
29 cd04794 euk_LANCL eukaryotic L 87.7 5.7 0.00012 39.6 11.1 133 208-378 170-306 (343)
30 COG4225 Predicted unsaturated 87.4 23 0.00049 35.9 14.7 205 129-381 41-306 (357)
31 cd04792 LanM-like LanM-like pr 86.3 18 0.00038 40.6 15.1 175 154-377 559-737 (825)
32 PF07221 GlcNAc_2-epim: N-acyl 85.8 6.2 0.00013 39.3 10.1 141 212-378 30-175 (346)
33 COG2942 N-acyl-D-glucosamine 2 85.5 9.4 0.0002 39.2 11.2 144 130-304 180-341 (388)
34 COG3533 Uncharacterized protei 82.8 7.1 0.00015 41.4 9.1 119 218-371 81-207 (589)
35 cd04794 euk_LANCL eukaryotic L 77.5 79 0.0017 31.4 18.0 182 154-376 70-258 (343)
36 cd04434 LanC_like LanC-like pr 75.0 82 0.0018 30.3 18.6 228 99-378 25-255 (343)
37 KOG2431|consensus 73.7 11 0.00025 39.1 7.3 93 275-381 184-280 (546)
38 COG4403 LcnDR2 Lantibiotic mod 70.7 94 0.002 35.4 13.9 115 155-289 596-719 (963)
39 COG4225 Predicted unsaturated 70.4 61 0.0013 32.9 11.4 147 154-311 97-254 (357)
40 PF06662 C5-epim_C: D-glucuron 69.9 10 0.00022 35.2 5.6 124 92-230 42-186 (189)
41 KOG2787|consensus 64.3 87 0.0019 31.8 11.0 122 221-381 240-370 (403)
42 PRK11097 endo-1,4-D-glucanase; 57.3 2.4E+02 0.0052 29.1 14.1 149 93-255 65-229 (376)
43 KOG2787|consensus 55.6 33 0.00071 34.7 6.4 112 98-238 244-361 (403)
44 PF12060 DUF3541: Domain of un 53.0 8.2 0.00018 36.4 1.7 20 354-373 36-55 (227)
45 cd04793 LanC LanC is the cycla 51.3 87 0.0019 31.5 9.0 81 208-302 249-329 (382)
46 cd04793 LanC LanC is the cycla 49.2 2.9E+02 0.0063 27.7 16.9 136 212-381 181-332 (382)
47 PF05426 Alginate_lyase: Algin 45.7 17 0.00036 34.7 2.7 30 352-381 66-95 (272)
48 TIGR02474 pec_lyase pectate ly 40.7 1.4E+02 0.0029 29.8 8.1 45 209-255 47-94 (290)
49 PF01270 Glyco_hydro_8: Glycos 39.9 64 0.0014 32.5 5.9 151 92-253 65-225 (342)
50 KOG1748|consensus 39.8 12 0.00026 32.7 0.6 51 31-102 51-102 (131)
51 COG4403 LcnDR2 Lantibiotic mod 36.1 57 0.0012 37.1 5.1 63 154-232 760-822 (963)
52 PF05227 CHASE3: CHASE3 domain 34.3 48 0.001 27.8 3.5 28 275-302 28-55 (138)
53 KOG2430|consensus 33.2 2.4E+02 0.0053 28.9 8.5 136 154-301 203-340 (587)
54 PF11329 DUF3131: Protein of u 28.6 4.4E+02 0.0096 27.1 9.8 136 128-284 38-180 (367)
55 KOG3760|consensus 27.6 1.2E+02 0.0026 31.7 5.4 96 132-238 492-589 (594)
56 PF05426 Alginate_lyase: Algin 26.3 62 0.0014 30.8 3.1 35 203-237 56-90 (272)
57 PF06202 GDE_C: Amylo-alpha-1, 25.4 7.2E+02 0.016 25.2 13.5 147 215-380 42-211 (370)
58 PF11186 DUF2972: Protein of u 23.9 52 0.0011 30.7 2.0 20 343-379 177-196 (199)
59 PF06917 Pectate_lyase_2: Peri 23.1 1.7E+02 0.0037 31.4 5.7 99 119-245 379-478 (557)
60 PF05147 LANC_like: Lanthionin 22.4 1.7E+02 0.0038 28.4 5.5 122 154-300 186-308 (355)
61 PF10305 Fmp27_SW: RNA pol II 21.4 1.5E+02 0.0032 24.7 4.1 31 26-56 13-43 (103)
No 1
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=100.00 E-value=6.9e-111 Score=870.15 Aligned_cols=351 Identities=33% Similarity=0.498 Sum_probs=311.9
Q ss_pred CCccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCCCccCcchhhhhhccc
Q psy3602 11 YNHTSKSYTNGMSKEEKMTLREESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSLTLIDTLD 90 (390)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~r~~~Vk~~f~haw~~Y~~~A~g~Del~PlS~~g~~~~~~~~~~~~~d~~gg~g~TlVDSLD 90 (390)
++..++++ ..+.+...+||++||+||+|||++|++||||||||+|+||+|+ | ++|||+|||||||
T Consensus 55 ~~~~~~~~--~~~~~~~~~r~~~Vk~~F~haW~~Y~~~Awg~DEL~P~S~~~~------------~-~~g~g~TlVDSLD 119 (522)
T PTZ00470 55 FNKIDEVY--YQNEKLNIKRRESVREAMKHAWEGYKEYAWGHDELRPLTKRHH------------E-WFGLGLTIIDSLD 119 (522)
T ss_pred CCCccccc--cCCchhHHHHHHHHHHHHHHHHHHHHHhCcCccceecCcCCcc------------C-CCcchhHHHHHHH
Confidence 44445555 3344566799999999999999999999999999999999875 3 4679999999999
Q ss_pred hhhhcCCHHHHHHHHHHHHhccCC--CCCceeccceehhhcccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHh
Q psy3602 91 TLAILGDIEEFEHATKLISENVNF--DSDIVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRL 168 (390)
Q Consensus 91 TL~iMgl~~ef~~a~~~v~~~~~f--~~~~~vsvFEttIR~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~L 168 (390)
|||||||++||++|++||.++++| +++..|||||||||+||||||||+||+ |++||+||+||||+|
T Consensus 120 TL~IMgl~~Ef~~a~~~V~~~l~f~~~~~~~vsvFEttIR~LGGLLSAy~Ls~------------d~~lL~kA~dLgd~L 187 (522)
T PTZ00470 120 TLKIMGLKKEYKEGRDWVANNLKQSKDTGLGVSVFETTIRVLGGLLSAYDLTG------------DEMYLEKAREIADRL 187 (522)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCCCCCCeeeeeeeehhhHhHHHHHHHHcC------------CHHHHHHHHHHHHHH
Confidence 999999999999999999988999 668899999999999999999999998 689999999999999
Q ss_pred hcccCCCCCCccceeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCe
Q psy3602 169 LPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGT 248 (390)
Q Consensus 169 l~AF~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~gL~~~ 248 (390)
+|||+||||||++.||+++|..+...+..+.+++||+||++|||++||++|||++|+++|++|++.|++.+...+||+|+
T Consensus 188 l~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i~~~l~~~~~~~~GL~p~ 267 (522)
T PTZ00470 188 LPAFNEDTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVMDALFSMKPAINGLYPI 267 (522)
T ss_pred HHhhcCCCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCCCCCCccce
Confidence 99999999999999999999877432225778999999999999999999999999999999999999987654799999
Q ss_pred eeecCCCCeeecccCCCCCCchhhHhHHHHHHhcC--cchhHHHHHHHHHHHHHHhhcCC--cceeEeccCCCcccchhh
Q psy3602 249 VLNIDSGDWIRRDSGVGAGIDSYYEYCLKAYVLLG--QDKYLSRFDKHYSAVMKYISRGP--LLIDVHMHKPQMTSRNFM 324 (390)
Q Consensus 249 ~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~ll~g--~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~ 324 (390)
.||+.+|+|++..+++||++|||||||||+|+|+| ++.++++|.++++++++||..++ .+..+.... .....++|
T Consensus 268 ~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~d~~~~~~~~~a~~~i~~~l~~~s~~~~~~v~~~~-~~~~~~~~ 346 (522)
T PTZ00470 268 FLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGREERYRRLFVESAKGIIEHLYKRSPKGLTYIAEMD-GGSLTNKM 346 (522)
T ss_pred EECCccCccCCCceeecCCcchhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcccCCCCcEEEeecc-CCcCcchh
Confidence 99999999999999999999999999999999997 57899999999999999986432 222332222 23456899
Q ss_pred hhhhhhcccce--------------------------------------------e-------------ccCCCCCCchh
Q psy3602 325 DALLAFWPGLQ--------------------------------------------V-------------HWGQHPLRPEF 347 (390)
Q Consensus 325 ~~L~~f~pG~~--------------------------------------------~-------------~~~~y~LRPE~ 347 (390)
+||+||+|||+ + ..++|+||||+
T Consensus 347 ~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC~~~Y~~~~tGl~PE~~~~~~~~~~~~~~~~d~~Y~LRPE~ 426 (522)
T PTZ00470 347 EHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYETYATSPTGLGPEIFHFDPNSGDISPNVHDSHYILRPET 426 (522)
T ss_pred hhhhhhccchhhhcccccccccccccHHHHHHHHHHHHHHHHHHHhcccCCCCceEEeccCccccccccCCCCCCCChhH
Confidence 99999999976 0 12469999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHhcccCCccccccC
Q psy3602 348 LESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPCGYAAVRD 389 (390)
Q Consensus 348 iES~fyl~R~TgD~~Yre~gW~if~ai~k~~r~~~Gya~i~d 389 (390)
|||+|||||+||||+||||||+||+||+++|||+|||++|+|
T Consensus 427 iES~fylyR~TgD~~yre~gW~~f~ai~k~~rt~~Gya~i~d 468 (522)
T PTZ00470 427 VESIFILYRLTGDPKYREWAWKIFQAIEKHCKTENGYSGLKN 468 (522)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 999999999999999999999999999999999999999988
No 2
>KOG2431|consensus
Probab=100.00 E-value=1.3e-107 Score=800.07 Aligned_cols=337 Identities=34% Similarity=0.547 Sum_probs=305.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCCCccCcchhhhhhccchhhhcCCHHHHHHHHH
Q psy3602 27 KMTLREESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSLTLIDTLDTLAILGDIEEFEHATK 106 (390)
Q Consensus 27 ~~~r~~~Vk~~f~haw~~Y~~~A~g~Del~PlS~~g~~~~~~~~~~~~~d~~gg~g~TlVDSLDTL~iMgl~~ef~~a~~ 106 (390)
.++|+++|++||+|||.+|+|||||||||+|+|++.+ |.|| +|+||||||||++||||.+||++|++
T Consensus 91 ~nerq~avv~aF~haW~gYkKyawGhD~l~Pvs~~~~------------d~fg-lGltiVDslDT~~iMgle~e~~ea~~ 157 (546)
T KOG2431|consen 91 LNERQKAVVDAFLHAWSGYKKYAWGHDELKPVSQSFS------------DWFG-LGLTIVDSLDTAMIMGLEDEFEEARE 157 (546)
T ss_pred hhHHHHHHHHHHHHHHhhhhhhcccccccccchhccc------------cccc-ccceEEechhHHHHhhhHHHHHHHHH
Confidence 6899999999999999999999999999999999875 7786 99999999999999999999999999
Q ss_pred HHHhccCCCCCceeccceehhhcccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhhcccCCCCCCccceeecc
Q psy3602 107 LISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLR 186 (390)
Q Consensus 107 ~v~~~~~f~~~~~vsvFEttIR~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~AF~T~sgiP~~~vnl~ 186 (390)
||+++++|+++..||+||||||+||||||||+||| +.+||+||+||||||+|||.|||+||++.|||.
T Consensus 158 Wv~~~L~f~~~~~VNlFEtTIRvLGGLLSayHLsg------------~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~ 225 (546)
T KOG2431|consen 158 WVEKKLHFEKDRDVNLFETTIRVLGGLLSAYHLSG------------DEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLG 225 (546)
T ss_pred HHHhhcccccccceehhhhhHHHHhhhhhhhcccc------------chhHHHHHHHHHHHHHHhhcCCCCCCcceeecC
Confidence 99999999999999999999999999999999998 679999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHHHHHHhhcCC-CCCCCCeeeecCCCCeeecccCCC
Q psy3602 187 HGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNR-DSDLMGTVLNIDSGDWIRRDSGVG 265 (390)
Q Consensus 187 ~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~-~~gL~~~~i~~~tg~~~~~~~~~G 265 (390)
+|.+.++ .|.+.+++||+.|+||||++||++|||++|++.|++++++|.+.... .+||+|.+||+.||.|.+..+++|
T Consensus 226 ~~~A~~p-~~~~~SStaEvttiQlEfr~Ls~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvPi~in~~tG~F~~~tI~lG 304 (546)
T KOG2431|consen 226 TGTAHPP-RWTGDSSTAEVTTIQLEFRYLSRLTGDPKYEELAEKVTEHIHGLGKKKHDGLVPIFINPNTGLFVGSTITLG 304 (546)
T ss_pred CCcccCC-CCCCccchhhheeeeeeHHHHHhhcCCchHHHHHHHHHHHHhccCccccCCeeeEEEcCCCCccccceEEec
Confidence 9988854 45689999999999999999999999999999999999999987543 369999999999999999999999
Q ss_pred CCCchhhHhHHHHHHhcCcc--hhHHHHHHHHHHHHHHhhc--CC-cceeEeccCCCcccchhhhhhhhhcccce-----
Q psy3602 266 AGIDSYYEYCLKAYVLLGQD--KYLSRFDKHYSAVMKYISR--GP-LLIDVHMHKPQMTSRNFMDALLAFWPGLQ----- 335 (390)
Q Consensus 266 a~~DS~YEYLlK~~ll~g~~--~~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~~~~~~~~~~~L~~f~pG~~----- 335 (390)
|++|||||||||+||++|++ .+.+.|.++++++++||.+ .| .+..+..-..+....++||||+||+||.+
T Consensus 305 aRgDSyYEYLlKQwlQtg~~~~~l~~dy~~am~gv~~~Llr~S~P~~~~fiGEl~~G~~fsPKMDHLVCFlpGtL~lG~~ 384 (546)
T KOG2431|consen 305 ARGDSYYEYLLKQWLQTGKSLTYLRDDYIEAMEGVRKHLLRQSKPNKLWFIGELPHGLQFSPKMDHLVCFLPGTLALGST 384 (546)
T ss_pred cccchHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHhcCCCcceEEEEecccccccCcccceEEEeecchhhhccc
Confidence 99999999999999999974 4669999999999999874 23 22223221112256799999999999976
Q ss_pred -----------------------------------ec-----------------cCCCCCCchhHHHHHHHHHhcCChhh
Q psy3602 336 -----------------------------------VH-----------------WGQHPLRPEFLESTYFLYKSTGDPHY 363 (390)
Q Consensus 336 -----------------------------------~~-----------------~~~y~LRPE~iES~fyl~R~TgD~~Y 363 (390)
++ +.+.+||||+|||+|||||+|||.||
T Consensus 385 ~Gl~~~~~hl~lA~~l~~TCyqMY~~~~TGLaPEIv~Fn~~~~~~~~DiyvKp~D~HnLlRPEtVESlfylYriT~D~kY 464 (546)
T KOG2431|consen 385 NGLPASEEHLELAQELMETCYQMYRQNPTGLAPEIVHFNLYPQPGKNDIYVKPLDRHNLLRPETVESLFYLYRITGDRKY 464 (546)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHccCcCCCCceEEEEeccCCCccCceeeccchhhcccChHHHhhhheeeEecCCchH
Confidence 11 13578999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCC-ccccccC
Q psy3602 364 LDVGKSVLRALQTHARVPC-GYAAVRD 389 (390)
Q Consensus 364 re~gW~if~ai~k~~r~~~-Gya~i~d 389 (390)
|||||+|||||+|++|+++ ||++|.|
T Consensus 465 qewGW~if~sfekytrv~~ggytSi~n 491 (546)
T KOG2431|consen 465 QEWGWEIFQSFEKYTRVPSGGYTSIDN 491 (546)
T ss_pred HHHhHHHHHHHHHhcccCCCCccchhh
Confidence 9999999999999999999 9999976
No 3
>KOG2429|consensus
Probab=100.00 E-value=7.2e-103 Score=788.25 Aligned_cols=353 Identities=51% Similarity=0.918 Sum_probs=328.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCCCccCcchhhhhhccchhhhcCCHHHHHHH
Q psy3602 25 EEKMTLREESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSLTLIDTLDTLAILGDIEEFEHA 104 (390)
Q Consensus 25 ~~~~~r~~~Vk~~f~haw~~Y~~~A~g~Del~PlS~~g~~~~~~~~~~~~~d~~gg~g~TlVDSLDTL~iMgl~~ef~~a 104 (390)
+...+.|++||+||.|||++|++||||+|||+|+||.|+.. ..+|++|++.+|||||||||.|||..+||++|
T Consensus 28 ~~~~~~Re~vr~MFyhayDnYm~hAFP~DEL~PltC~g~~~-------~~~D~~G~ysLtLIDaLdTLailGn~~eF~ra 100 (622)
T KOG2429|consen 28 SKKKQYREEVREMFYHAYDNYMEHAFPYDELKPLTCVGRGP-------GVNDTLGSYSLTLIDALDTLAILGNRTEFQRA 100 (622)
T ss_pred ccHHHHHHHHHHHHHHhhhhHhhccCCccccCcceecCCCC-------CccccccccchhhHHHhhHHHHhCChHHHHHH
Confidence 34488999999999999999999999999999999999743 24699999999999999999999999999999
Q ss_pred HHHHHhccCCCCCceeccceehhhcccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhhcccCCCCCCccceee
Q psy3602 105 TKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRIN 184 (390)
Q Consensus 105 ~~~v~~~~~f~~~~~vsvFEttIR~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~AF~T~sgiP~~~vn 184 (390)
++||+++++|+.|..|||||||||+||||||||.|+..........+.|+..||..|++||+||||||+||||||+++||
T Consensus 101 V~lv~~~~~Fd~d~~VqVFEttIRVlGGLLSAHllA~~~~~~~~~~~~y~g~LLrLA~dlA~RLLPAF~T~TGiPy~~vN 180 (622)
T KOG2429|consen 101 VRLVIETVSFDIDSTVQVFETTIRVLGGLLSAHLLAKKDPVGVFLGPDYDGELLRLAEDLARRLLPAFETPTGIPYGRVN 180 (622)
T ss_pred HHHHHhhCCcccCCeeEEEEEehhhhhhHHHHHHhhccCccCccccCCCCchHHHHHHHHHHhhcccccCCCCCCcceee
Confidence 99999999999999999999999999999999999832222233445789999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCeeeecCCCCeeecccCC
Q psy3602 185 LRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRDSGV 264 (390)
Q Consensus 185 l~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~gL~~~~i~~~tg~~~~~~~~~ 264 (390)
|+.|+.+ +..+.+|+|.+||++|||..||+|||||+|++.|++|.+.||+.|+. .||+|++||+.||+|+...+++
T Consensus 181 Lk~GV~~---~Et~~tctAg~gslllEFg~LSrLTGD~~fE~vA~~A~~~lW~~RS~-igLlGn~idV~tG~W~~~~sGI 256 (622)
T KOG2429|consen 181 LKYGVDK---GETTETCTAGAGSLLLEFGTLSRLTGDPKFEKVARRALDALWSLRSG-IGLLGNHIDVQTGEWTAPDSGI 256 (622)
T ss_pred hhcCCCC---CCCcceecccccceeeehhhhHHhhCCcHHHHHHHHHHHHHHhhcCC-CCcccceeeccccceecccccc
Confidence 9999987 45689999999999999999999999999999999999999999986 6999999999999999999999
Q ss_pred CCCCchhhHhHHHHHHhcCcchhHHHHHHHHHHHHHHhhcCCcceeEeccCCCcccchhhhhhhhhcccceec-------
Q psy3602 265 GAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYISRGPLLIDVHMHKPQMTSRNFMDALLAFWPGLQVH------- 337 (390)
Q Consensus 265 Ga~~DS~YEYLlK~~ll~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~f~pG~~~~------- 337 (390)
||+.|||||||+|.|||+||+++++||.++++++++|+.+++++.+|.|..+... .+|.|+|.|||||+|+.
T Consensus 257 GAgiDSfyEYllK~yILfgd~e~lemf~ea~~ai~~y~r~~~wY~~V~m~~G~v~-~p~~dSLqAfwpGlqvLaGDvd~A 335 (622)
T KOG2429|consen 257 GAGIDSFYEYLLKGYILFGDPELLEMFNEAYEAIQKYTRKGPWYVNVNMDSGSVS-LPWFDSLQAFWPGLQVLAGDVDDA 335 (622)
T ss_pred ccchHHHHHHHHHHheecCCHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCCcee-hHHHhhHHhhccchhhhhcchHHH
Confidence 9999999999999999999999999999999999999999999999998877664 59999999999999810
Q ss_pred -------------------------------cCCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcccCCcccc
Q psy3602 338 -------------------------------WGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPCGYAA 386 (390)
Q Consensus 338 -------------------------------~~~y~LRPE~iES~fyl~R~TgD~~Yre~gW~if~ai~k~~r~~~Gya~ 386 (390)
-..|+||||.|||.|||||+|+||.|++.|-+|.++||+++|++||||+
T Consensus 336 ~~~h~~y~~vwkkyG~lPEryN~~~~~~~~~~~~YPLRPElvEStyyLYrATkdp~yL~vG~~~l~sLe~~~k~~CGfAt 415 (622)
T KOG2429|consen 336 IRTHLMYFSVWKKYGFLPERYNLATQEPPPKREGYPLRPELVESTYYLYRATKDPFYLHVGEDMLKSLEKYTKVKCGFAT 415 (622)
T ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCcccCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCcccee
Confidence 1259999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy3602 387 VRD 389 (390)
Q Consensus 387 i~d 389 (390)
|+|
T Consensus 416 i~n 418 (622)
T KOG2429|consen 416 IRN 418 (622)
T ss_pred eee
Confidence 987
No 4
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=100.00 E-value=8.9e-104 Score=812.35 Aligned_cols=327 Identities=41% Similarity=0.658 Sum_probs=277.5
Q ss_pred HHHHHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCCCccCcchhhhhhccchhhhcCCHHHHHHHHHHHHhccCCCC
Q psy3602 37 MFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSLTLIDTLDTLAILGDIEEFEHATKLISENVNFDS 116 (390)
Q Consensus 37 ~f~haw~~Y~~~A~g~Del~PlS~~g~~~~~~~~~~~~~d~~gg~g~TlVDSLDTL~iMgl~~ef~~a~~~v~~~~~f~~ 116 (390)
||+|||++|++||||||||+|+|++|. |++||||+|||||||||+||||++||++|++||.++++|++
T Consensus 1 ~f~~a~~~Y~~~A~g~Del~P~s~~~~------------~~~~g~~~TlvDSLdTL~imgl~~ef~~a~~~v~~~~~f~~ 68 (452)
T PF01532_consen 1 MFRHAWNGYKKYAWGHDELRPLSGSGS------------DSFGGWGATLVDSLDTLYIMGLKDEFNEAVDWVSNNLDFDQ 68 (452)
T ss_dssp HHHHHHHHHHHHTTTSSEEETTTTEEE-------------SSTTS-HHHHHHHHHHHHHTHHHHHHHHHHHHHHC--TTS
T ss_pred ChhHHHHHHHHhcCCccccccccCCCC------------CccccccceeeeeccceeecCCHHHHHHHHHHHHhhcCcCc
Confidence 899999999999999999999999986 77899999999999999999999999999999988999998
Q ss_pred Cc-eeccceehhhcccchhhHhhhh--hhhccccchhhhhcHHHHHHHHHHHHHhhcccCCCCCCccceeecccCCCCCC
Q psy3602 117 DI-VVSVFETNIRVLGGLLSGHVLA--EYFKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKG 193 (390)
Q Consensus 117 ~~-~vsvFEttIR~LGGLLSAy~Ls--~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~AF~T~sgiP~~~vnl~~g~~~~~ 193 (390)
+. .|||||||||+||||||||+|| + |+.||+||+||||+|+|||+||+|||+++||++++... +
T Consensus 69 ~~~~vs~fEt~iR~lGgLLSay~ls~~~------------d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~-~ 135 (452)
T PF01532_consen 69 DDSTVSVFETTIRVLGGLLSAYDLSGEG------------DPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKN-R 135 (452)
T ss_dssp SSSEEEHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEE-T
T ss_pred cceeechHHhhhHhhhhhHHHHHHHhcc------------chHHHHHHHHHHHHHHHhccCCCccccceeeecccCCC-C
Confidence 87 8999999999999999999999 5 78999999999999999999999999999999875544 1
Q ss_pred CCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHHHHHHhh--cCCCCCCCCeeeecCCCCeeecccCCCCCCchh
Q psy3602 194 LEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAA--RNRDSDLMGTVLNIDSGDWIRRDSGVGAGIDSY 271 (390)
Q Consensus 194 ~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~--~~~~~gL~~~~i~~~tg~~~~~~~~~Ga~~DS~ 271 (390)
.....+++||+||++|||++||++|||++|+++|+++++.|++. +.+.+||+|+.||+.+|+|++..+++||++|||
T Consensus 136 -~~~~~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~ 214 (452)
T PF01532_consen 136 -WPGGESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSF 214 (452)
T ss_dssp -TCCGEEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHH
T ss_pred -CCCCcccccccccceechhHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchH
Confidence 23456789999999999999999999999999999999999994 345789999999999999999999999999999
Q ss_pred hHhHHHHHHhcC--cchhHHHHHHHHHHHHHHhhcCCc------ceeEeccC--CCcccchhhhhhhhhcccce------
Q psy3602 272 YEYCLKAYVLLG--QDKYLSRFDKHYSAVMKYISRGPL------LIDVHMHK--PQMTSRNFMDALLAFWPGLQ------ 335 (390)
Q Consensus 272 YEYLlK~~ll~g--~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~--~~~~~~~~~~~L~~f~pG~~------ 335 (390)
||||||+|+|+| ++.++++|.++++++++||..+|. +..+.... ......++|+||+||+||++
T Consensus 215 YEYLlK~~lL~g~~d~~~~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~ 294 (452)
T PF01532_consen 215 YEYLLKMYLLLGGTDEQYRDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKL 294 (452)
T ss_dssp HHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHT
T ss_pred HHhhhhhhhhcCccchHHHHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcc
Confidence 999999999999 788999999999999999875422 22222222 23445689999999999987
Q ss_pred ----------------------------------e--------------------ccCCCCCCchhHHHHHHHHHhcCCh
Q psy3602 336 ----------------------------------V--------------------HWGQHPLRPEFLESTYFLYKSTGDP 361 (390)
Q Consensus 336 ----------------------------------~--------------------~~~~y~LRPE~iES~fyl~R~TgD~ 361 (390)
+ ..++|+||||+|||+|||||+||||
T Consensus 295 ~~~~~~~~~A~~l~~~C~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~ 374 (452)
T PF01532_consen 295 FNDEGDLELAEELTETCYWLYKSTPTGLGPEIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDP 374 (452)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTSSSSS--SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BH
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcccCCCceEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCc
Confidence 1 1136999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcccCCccccccC
Q psy3602 362 HYLDVGKSVLRALQTHARVPCGYAAVRD 389 (390)
Q Consensus 362 ~Yre~gW~if~ai~k~~r~~~Gya~i~d 389 (390)
+||||||+||++|||+||++|||++|+|
T Consensus 375 ~yre~gw~if~ai~k~~r~~~G~a~i~d 402 (452)
T PF01532_consen 375 KYREWGWDIFQAIEKYCRTECGYAGIKD 402 (452)
T ss_dssp HHHHHHHHHHHHHHHHTEETTEE--BSE
T ss_pred hHHHHHHHHHHHHHHhcccceehhhhcc
Confidence 9999999999999999999999999987
No 5
>KOG2204|consensus
Probab=100.00 E-value=5.5e-99 Score=760.38 Aligned_cols=340 Identities=34% Similarity=0.476 Sum_probs=304.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCCCccC--cchhhhhhccchhhhcCCHHHHHH
Q psy3602 26 EKMTLREESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLG--NFSLTLIDTLDTLAILGDIEEFEH 103 (390)
Q Consensus 26 ~~~~r~~~Vk~~f~haw~~Y~~~A~g~Del~PlS~~g~~~~~~~~~~~~~d~~g--g~g~TlVDSLDTL~iMgl~~ef~~ 103 (390)
+..+||++||+||+|||++|++||||+|||+|+||+|++. +.|| ..|+||||||||||||||++||++
T Consensus 171 ~~~~rrekVkemm~hAw~~Yk~yawg~neLrp~sk~g~s~----------~ifG~~~~GATIvDslDTlyim~l~~e~qE 240 (625)
T KOG2204|consen 171 KYRERREKVKEMMKHAWNNYKKYAWGKNELRPSSKQGHSS----------SIFGAHLKGATIVDSLDTLYIMGLKEEFQE 240 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccccCccccCCccc----------cccccCcCCchHHHhhhHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999999999743 4455 589999999999999999999999
Q ss_pred HHHHHHhccCCC-CCceeccceehhhcccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhhcccCCCCCCccce
Q psy3602 104 ATKLISENVNFD-SDIVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGR 182 (390)
Q Consensus 104 a~~~v~~~~~f~-~~~~vsvFEttIR~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~AF~T~sgiP~~~ 182 (390)
|++||+.+++|+ ++..+||||||||++|||||||.||| ++++++||+++||+|||||+||||||++.
T Consensus 241 ar~wi~~~~~~~~v~~~~SvFE~NirF~GGllsay~lsg------------e~~f~~kA~~igdkLLpAfntptGIp~~~ 308 (625)
T KOG2204|consen 241 ARDWIAYNLDFKTVPIELSVFETNIRFVGGLLSAYALSG------------EEMFLEKAPEIGDKLLPAFNTPTGIPKAL 308 (625)
T ss_pred HHHHHHhhcccccccchhheeeeeeeeehhhHHHhhhcc------------cHHHHHhhHHHHHHhhhcccCCCCCchhh
Confidence 999999999999 78999999999999999999999998 68999999999999999999999999999
Q ss_pred eecccCCCCCC-CCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCeeeecCCCCeeecc
Q psy3602 183 INLRHGLKSKG-LEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRD 261 (390)
Q Consensus 183 vnl~~g~~~~~-~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~gL~~~~i~~~tg~~~~~~ 261 (390)
||+++|...+. +...+.+.|||+||++|||.+||++||||+|.+++++|.+.|.++.. +.||+|++|||++|.|.+..
T Consensus 309 vn~ksG~~~n~~wasgg~SILaE~gtlhlef~~LS~ltg~P~~~ekv~~IRk~l~k~ek-P~GLypnYinP~sg~wgq~~ 387 (625)
T KOG2204|consen 309 VNNKSGDADNYGWASGGSSILAEFGTLHLEFSYLSKLTGNPTFAEKVVKIRKVLNKSEK-PHGLYPNYINPSSGEWGQHH 387 (625)
T ss_pred hccccCccCCcccccCcchHhhhcCceeeehHHhhhccCCchHHHHHHHHHHHHHhhcC-CCCCCcccccCCCCchhhHH
Confidence 99999987742 22245677999999999999999999999999999999999998764 57999999999999999999
Q ss_pred cCCCCCCchhhHhHHHHHHhcCc--chhHHHHHHHHHHHHHHhhcC-C--cceeEeccCCCcccchhhhhhhhhcccce-
Q psy3602 262 SGVGAGIDSYYEYCLKAYVLLGQ--DKYLSRFDKHYSAVMKYISRG-P--LLIDVHMHKPQMTSRNFMDALLAFWPGLQ- 335 (390)
Q Consensus 262 ~~~Ga~~DS~YEYLlK~~ll~g~--~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~~~~~~~~~~~~~L~~f~pG~~- 335 (390)
.++||.+|||||||+|.|+++++ .++..||.+++.++.+|+.+. + .+..+.... .+...++|+||+||.+||.
T Consensus 388 tslg~lgDSfyeyllK~wl~s~kTd~eak~my~~am~Ai~~~li~~S~~s~ltyi~e~~-~g~lehKm~hlacf~gGm~a 466 (625)
T KOG2204|consen 388 TSLGALGDSFYEYLLKAWLQSDKTDCEAKGMYEDAMIAIEKYLIFKSDGSGLTYISEWN-GGGLEHKMGHLACFAGGMFA 466 (625)
T ss_pred hHHhhhhhhHHHHHHHHHhhcCCcchHHHHhHHHHHHHHHhhheeccCCCCeEEEEecC-CCchhhhhchhhccccccee
Confidence 99999999999999999999985 578999999999999998642 2 222232222 2335699999999999987
Q ss_pred -----------------------------------------e-------------ccCCCCCCchhHHHHHHHHHhcCCh
Q psy3602 336 -----------------------------------------V-------------HWGQHPLRPEFLESTYFLYKSTGDP 361 (390)
Q Consensus 336 -----------------------------------------~-------------~~~~y~LRPE~iES~fyl~R~TgD~ 361 (390)
+ .-..|+||||+|||+|||||+||||
T Consensus 467 lgA~~~~~~~~~~~y~el~~eia~TchesY~rt~T~lgpesf~fn~~~ea~~~r~~EsyyILrpEviEs~fYlwRlT~d~ 546 (625)
T KOG2204|consen 467 LGAIKGDTVGSSKHYLELGGEIATTCHESYTRTTTKLGPESFWFNHGVEAFAVRKVESYYILRPEVIESYFYLWRLTGDQ 546 (625)
T ss_pred eccccCCCcchhHHHHHHhHHHHHHHHHHHhccccccChhhhcccCccchhhhhcccceeecCHHHHHHHHHHhhhcCCh
Confidence 0 0025999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcccCCccccccC
Q psy3602 362 HYLDVGKSVLRALQTHARVPCGYAAVRD 389 (390)
Q Consensus 362 ~Yre~gW~if~ai~k~~r~~~Gya~i~d 389 (390)
+||+|||++||||||+||+..||++|+|
T Consensus 547 kyR~wgweavqalek~cr~~~G~~glkd 574 (625)
T KOG2204|consen 547 KYRSWGWEAVQALEKYCRVAKGYSGLKD 574 (625)
T ss_pred hHHHHHHHHHHHHHHhcccccchhhhhH
Confidence 9999999999999999999999999987
No 6
>KOG2430|consensus
Probab=100.00 E-value=1.8e-94 Score=694.49 Aligned_cols=367 Identities=62% Similarity=1.103 Sum_probs=348.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCCCccCcchhhhhhccchhhhcCCHHHHH
Q psy3602 23 SKEEKMTLREESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSLTLIDTLDTLAILGDIEEFE 102 (390)
Q Consensus 23 ~~~~~~~r~~~Vk~~f~haw~~Y~~~A~g~Del~PlS~~g~~~~~~~~~~~~~d~~gg~g~TlVDSLDTL~iMgl~~ef~ 102 (390)
++++..+..+++-+||.|+|++||+||+|.|||.|+||+|+-+|+.|||++..|.+|.+++|||||||||.+|+-.+||+
T Consensus 2 ~~~dkkkl~~e~~dmf~h~y~nyme~a~padelmplsckgrirg~~psrgdvddalgkfsltlidsldtlvvln~~~efe 81 (587)
T KOG2430|consen 2 EEEDKKKLGKEALDMFDHAYGNYMEHAFPADELMPLSCKGRIRGQEPSRGDVDDALGKFSLTLIDSLDTLVVLNELDEFE 81 (587)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhccCchhhcccccccceecCcCCCCCchhhhhcceeeeeeccccceeeccchHHHH
Confidence 35566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCceeccceehhhcccchhhHhhhhhhh-ccccchhhhhcHHHHHHHHHHHHHhhcccCCCCCCccc
Q psy3602 103 HATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYF-KLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHG 181 (390)
Q Consensus 103 ~a~~~v~~~~~f~~~~~vsvFEttIR~LGGLLSAy~Ls~~~-~~~~~~~~~yd~~lL~kA~dLad~Ll~AF~T~sgiP~~ 181 (390)
.|++-|.++++|+.|..||||||+||+||||||||.|..-. ...++.+++||..||..|++||.+|||||+|.||+|++
T Consensus 82 ~ai~~vik~v~~dnd~vvsvfetnirvlggli~~h~la~llk~e~~e~lq~y~dellkmakelg~kllpafnttsglp~~ 161 (587)
T KOG2430|consen 82 DAIDKVIKDVNFDNDHVVSVFETNIRVLGGLIGAHSLAELLKEEKGERLQTYDDELLKMAKELGNKLLPAFNTTSGLPFP 161 (587)
T ss_pred HHHHHHHHhccCCCCeEEEEeecccHhhhccchHHHHHHHHHHhccchhhhhhHHHHHHHHHHhhhhccccccCCCCCCc
Confidence 99999999999999999999999999999999999998644 34567889999999999999999999999999999999
Q ss_pred eeecccCCCCC--CCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCeeeecCCCCeee
Q psy3602 182 RINLRHGLKSK--GLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIR 259 (390)
Q Consensus 182 ~vnl~~g~~~~--~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~gL~~~~i~~~tg~~~~ 259 (390)
+|||+.|...+ ..+....+|+|++||++|||..||++||+|.|+++|+++++.||..+.+.+.|+|..||+.+|.|+.
T Consensus 162 rinlk~gi~~pea~~~~e~dtctac~gtlilefaals~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~r 241 (587)
T KOG2430|consen 162 RINLKFGIQDPEAHLGREKDTCTACAGTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTR 241 (587)
T ss_pred ccchhccccChhhhhcccccchhhccchhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCccee
Confidence 99999997764 2234578999999999999999999999999999999999999999888899999999999999999
Q ss_pred cccCCCCCCchhhHhHHHHHHhcCcchhHHHHHHHHHHHHHHhhcCCcceeEeccCCCcccchhhhhhhhhcccce----
Q psy3602 260 RDSGVGAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYISRGPLLIDVHMHKPQMTSRNFMDALLAFWPGLQ---- 335 (390)
Q Consensus 260 ~~~~~Ga~~DS~YEYLlK~~ll~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~f~pG~~---- 335 (390)
..+++||+.|||||||||.|+|.||+.|+++|.+.|++|++|+.++|.++++++|.|....+.|||.|.+||||++
T Consensus 242 kdsgigagidsyyey~lkayillgddsfldrfn~hydai~ryi~k~pi~ldvhihkp~l~ar~~mdallaf~pglqvlkg 321 (587)
T KOG2430|consen 242 KDSGIGAGIDSYYEYLLKAYILLGDDSFLDRFNKHYDAIKRYINKGPIFLDVHIHKPMLAARGFMDALLAFFPGLQVLKG 321 (587)
T ss_pred cccCcCcchHHHHHHHHHHhheeccHHHHHHHHHHHHHHHHHhcCCCeEEEEecccchhhHhhHHHHHHHhCcchhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999998888899999999999987
Q ss_pred -------------------------------eccCCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcccCCcc
Q psy3602 336 -------------------------------VHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPCGY 384 (390)
Q Consensus 336 -------------------------------~~~~~y~LRPE~iES~fyl~R~TgD~~Yre~gW~if~ai~k~~r~~~Gy 384 (390)
++|.+.++|||.+||.|+|||+||||.|.+.|-++..+|+|+.|++|||
T Consensus 322 dik~aie~heml~qvikkh~flpeaft~df~vhwaehpirpefaestyflykat~dp~yl~v~k~iidninkyakvpcgf 401 (587)
T KOG2430|consen 322 DIKEAIEMHEMLFQVIKKHKFLPEAFTHDFQVHWAEHPIRPEFAESTYFLYKATGDPHYLEVAKQIIDNINKYAKVPCGF 401 (587)
T ss_pred ccHHHHHHHHHHHHHHHHcccChHhhcccceeecccCCCChhhhhhheeeecccCCchHHHHHHHHHHHHhhheeCCchH
Confidence 7889999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q psy3602 385 AAVRD 389 (390)
Q Consensus 385 a~i~d 389 (390)
++++|
T Consensus 402 aalkd 406 (587)
T KOG2430|consen 402 AALKD 406 (587)
T ss_pred HHHHH
Confidence 99987
No 7
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.14 E-value=0.00014 Score=73.01 Aligned_cols=305 Identities=12% Similarity=0.032 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCc---ccccCCCCCCCCCCCCCCCCCCccCcchhhhhhccchhhhcCCHHHHH----H
Q psy3602 31 REESRDMFYHAYRAYMDNAYPADE---LMPLSCTGRWRSQHTSRGDIDDTLGNFSLTLIDTLDTLAILGDIEEFE----H 103 (390)
Q Consensus 31 ~~~Vk~~f~haw~~Y~~~A~g~De---l~PlS~~g~~~~~~~~~~~~~d~~gg~g~TlVDSLDTL~iMgl~~ef~----~ 103 (390)
++.-+..+.++..-+.++++.... .-=+...|+ |... ..+.+ .-+-+|-++..++.++-.+++. +
T Consensus 9 ~~~~~~~~~~~~~fw~~~~~d~~~gg~~~~l~~~g~-----~~~~-~k~~~--~~ar~i~~~a~a~~~~~~~~~l~~A~~ 80 (384)
T cd00249 9 AQLAGWLLEDLLPFWLEAGLDREAGGFFECLDRDGQ-----PFDT-DRRLW--LQARQVYCFAVAYLLGWRPEWLEAAEH 80 (384)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCeEEEECCCCC-----CCCC-CCeEE--EecHHHHHHHHHHHhcCChhHHHHHHH
Confidence 333445567777788887765421 111222222 1100 01222 3467899999999998767663 3
Q ss_pred HHHHHHhccC----------CCCCceec---c-ceehhhcccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhh
Q psy3602 104 ATKLISENVN----------FDSDIVVS---V-FETNIRVLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLL 169 (390)
Q Consensus 104 a~~~v~~~~~----------f~~~~~vs---v-FEttIR~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll 169 (390)
+.+++.+++. ++.++.+. . .+.-.++|=||+.+|..++ ++.+|+.|+++.+.|.
T Consensus 81 ~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~------------d~~~l~~A~~~~~~l~ 148 (384)
T cd00249 81 GLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGG------------DPEARALAEETIDLLE 148 (384)
T ss_pred HHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHHH
Confidence 4456655432 11122211 1 2344678888888888886 6889999999999998
Q ss_pred cccCCCCCCccceeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHHHHHHhhc-CCCCCCCCe
Q psy3602 170 PAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAAR-NRDSDLMGT 248 (390)
Q Consensus 170 ~AF~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~-~~~~gL~~~ 248 (390)
.-|-.+.|.-+...+.. +...+ +......+++ =+..|+++|||++|.+.|+++++.+.+.- ....|.+..
T Consensus 149 ~~~~~~~g~~~~~~~~~-~~~~~--~~~~~~h~~~------all~l~~~tgd~~~~~~A~~l~~~~~~~~~~~~~G~~~e 219 (384)
T cd00249 149 RRFWEDHPGAFDEADPG-TPPYR--GSNPHMHLLE------AMLAAYEATGEQKYLDRADEIADLILDRFIDAESGVVRE 219 (384)
T ss_pred HHhccCCCcccCCCCCC-CCCCC--CCChhHHHHH------HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCcccCeEEE
Confidence 87742233213222211 11110 1111111223 16678899999999999999998887642 222454444
Q ss_pred eeecCCCCee----ecccCCCCCCchhhHhHHHHHHhcCcchhHHHHHHHHHHHHHHhhcC--Cccee-EeccCCCcccc
Q psy3602 249 VLNIDSGDWI----RRDSGVGAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYISRG--PLLID-VHMHKPQMTSR 321 (390)
Q Consensus 249 ~i~~~tg~~~----~~~~~~Ga~~DS~YEYLlK~~ll~g~~~~~~~~~~~~~~~~~~l~~~--~~~~~-~~~~~~~~~~~ 321 (390)
..+.. .... +..+..|..... ---|+..+.++|++++.+.-.+.++.+.++.... ..++. .... .
T Consensus 220 ~~~~~-~~~~~~~~~~~~~Pgh~~e~-a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~~~~~~--~---- 291 (384)
T cd00249 220 HFDED-WNPYNGDKGRHQEPGHQFEW-AWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLYYSFLDD--G---- 291 (384)
T ss_pred EECCC-CCCCcCcCCCcCCCchHHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEEEeeECC--C----
Confidence 33211 0101 111223333332 2245778888898888888888888888776422 11212 1100 0
Q ss_pred hhhhhhhhhcccceeccCCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcccCC
Q psy3602 322 NFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPC 382 (390)
Q Consensus 322 ~~~~~L~~f~pG~~~~~~~y~LRPE~iES~fyl~R~TgD~~Yre~gW~if~ai~k~~r~~~ 382 (390)
.. ........|+ --|.+..+..+|++|||++|.+++-+++..+.++...+.
T Consensus 292 ----~~--~~~~~~~~w~----~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~~d~~ 342 (384)
T cd00249 292 ----GL--LEDDDKRWWP----QTEALKAALALAGITGDERYWQWYQRAWAYLWRHFIDPE 342 (384)
T ss_pred ----CC--cccccccccH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 00 0000001111 348888899999999999999999999999998876553
No 8
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00033 Score=75.14 Aligned_cols=194 Identities=20% Similarity=0.175 Sum_probs=120.2
Q ss_pred ecccCCccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCCCccCcchhhhh
Q psy3602 7 HGENYNHTSKSYTNGMSKEEKMTLREESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSLTLI 86 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~r~~~Vk~~f~haw~~Y~~~A~g~Del~PlS~~g~~~~~~~~~~~~~d~~gg~g~TlV 86 (390)
-|.+..|.+.+.... .++..++.+.+|+..+-++.. -.+|-.-. -.+-+|-.-+|
T Consensus 363 eGrnvL~~~~~~~~~--~~~~~~~l~~~r~kL~~~R~~---------R~~P~~Dd--------------kvlt~wNglmi 417 (667)
T COG1331 363 EGRNVLHVPGPLEEA--IEEAEEKLERAREKLLAAREK---------RKQPSRDD--------------KVLTDWNGLMI 417 (667)
T ss_pred CCceeecccCchhhh--hhhhHHHHHHHHHHHHHHHHh---------CCCCCCCc--------------ceeeccHHHHH
Confidence 355555665554331 456677888888888866654 12333221 12223433456
Q ss_pred hccchhh-hcCCHHHHH---HHHHHHHhccCCC------CCc---eeccceehhhcccchhhHhhhhhhhccccchhhhh
Q psy3602 87 DTLDTLA-ILGDIEEFE---HATKLISENVNFD------SDI---VVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWY 153 (390)
Q Consensus 87 DSLDTL~-iMgl~~ef~---~a~~~v~~~~~f~------~~~---~vsvFEttIR~LGGLLSAy~Ls~~~~~~~~~~~~y 153 (390)
.+|--.. +.|-.+=++ ++.++|.+++.-+ .++ .+..-|--..++.|||+.|+.++
T Consensus 418 ~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~------------ 485 (667)
T COG1331 418 AALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATG------------ 485 (667)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheeeecCcccccccchhHHHHHHHHHHHHHhhC------------
Confidence 6665444 445443333 3445666655333 122 33455777899999999999997
Q ss_pred cHHHHHHHHHHHHHhhcccCCCC-CCccceeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHH
Q psy3602 154 TGQLLELAKDIGFRLLPAFNTTT-GIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAM 232 (390)
Q Consensus 154 d~~lL~kA~dLad~Ll~AF~T~s-giP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~ 232 (390)
+..+|++|++|++.++..|-.+. | -+..-.........+.........+.-+....-+.+||++|||.+|.++|+++.
T Consensus 486 d~~yL~~A~~L~~~~i~~f~d~~gG-f~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L 564 (667)
T COG1331 486 DLAYLEKAIELADEAIADFWDDEGG-FYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDIL 564 (667)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCC-cccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHH
Confidence 67899999999999999995555 5 222111112211111111233334556777888999999999999999999999
Q ss_pred HHHHhh
Q psy3602 233 DGLWAA 238 (390)
Q Consensus 233 ~~l~~~ 238 (390)
+++...
T Consensus 565 ~a~~~~ 570 (667)
T COG1331 565 QAFAGL 570 (667)
T ss_pred HHHHHH
Confidence 888764
No 9
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.73 E-value=0.00071 Score=71.75 Aligned_cols=193 Identities=17% Similarity=0.158 Sum_probs=109.6
Q ss_pred hhcccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhhcccCCCCCCccceeecccCCCCCCCCCCCCccccccc
Q psy3602 127 IRVLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAG 206 (390)
Q Consensus 127 IR~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~AF~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~G 206 (390)
-.+|-||+.+|.++| ++.+|+-|..+||.+....+..+.-|.. .....|.|
T Consensus 128 ~~ll~gl~~~y~~tG------------~~~~L~v~~k~ad~~~~~~~~~~~~~~~-----------------~~~~~~~~ 178 (520)
T PF07944_consen 128 GKLLEGLIDYYEATG------------NERALDVATKLADWVYRRLSRLGPEPGQ-----------------KMGYPEHG 178 (520)
T ss_pred hHHHHHHHHHHHHHC------------cHHHHHHHHHHHHHHHHHhccCCHHHhh-----------------cccccccc
Confidence 357789999999998 6789999999999983332211100100 01123667
Q ss_pred chhhhHHHHHHhhCChhHHHHHHHHHHHHHhhc----CCCCCCCCeeeecCCCCeeecccCCCCCCchhhHhHHHHHHhc
Q psy3602 207 TMILEMAALSRLSGLPIFEAKAHRAMDGLWAAR----NRDSDLMGTVLNIDSGDWIRRDSGVGAGIDSYYEYCLKAYVLL 282 (390)
Q Consensus 207 sl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~----~~~~gL~~~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~ll~ 282 (390)
.+.+-+..|.++|||++|.+.|++..+.-.... ....-+....-+..-|+.+ +.-..|+-+...|.++
T Consensus 179 ~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~~~~a~~~~~h~v--------r~~y~~~g~a~~y~~t 250 (520)
T PF07944_consen 179 GINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLPGRHANTHIGHAV--------RAMYLYSGAADLYEET 250 (520)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCccCCCccccceeeEEE--------EhhhhhhHHHHHHHHh
Confidence 777889999999999999999988766432110 0001111111111111111 2234566788999999
Q ss_pred CcchhHHHHHHHHHHHHHHhhcCCcceeEeccCCCcccchhhhhhhhhcccc-eeccCCCCCCch------hHHHHHHHH
Q psy3602 283 GQDKYLSRFDKHYSAVMKYISRGPLLIDVHMHKPQMTSRNFMDALLAFWPGL-QVHWGQHPLRPE------FLESTYFLY 355 (390)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~f~pG~-~~~~~~y~LRPE------~iES~fyl~ 355 (390)
|++++++.=...++.+.++ -++... +..... +.-+|-+.- +.....| .| .+-+...|+
T Consensus 251 gd~~~~~a~~~~w~~v~~~----~~y~tG-----g~g~~~---~~E~f~~~~~lp~~~~~---~EtCas~~~~~~~~~L~ 315 (520)
T PF07944_consen 251 GDEEYLDAAENFWDNVVRH----HMYATG-----GIGSDH---EGEHFGPPYDLPNRLAY---AETCASVNMMKLARRLF 315 (520)
T ss_pred CCHHHHHHHHHHHHHHHhc----CeeccC-----CCcCCC---CCccCCCCCCCCcCCCC---ccccHHHHHHHHHHHHH
Confidence 9998887766666666543 111100 000000 001222211 1111112 44 344566789
Q ss_pred HhcCChhhHHHHHHHH
Q psy3602 356 KSTGDPHYLDVGKSVL 371 (390)
Q Consensus 356 R~TgD~~Yre~gW~if 371 (390)
|+|||++|-|+..+++
T Consensus 316 ~~tgd~~yaD~~Er~l 331 (520)
T PF07944_consen 316 RLTGDARYADYYERAL 331 (520)
T ss_pred hcCCCchHHHHHHHHH
Confidence 9999999999987764
No 10
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=97.56 E-value=0.0058 Score=61.37 Aligned_cols=217 Identities=15% Similarity=0.039 Sum_probs=131.7
Q ss_pred hhhcccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhhccc-CCCCCCccceeecccCCCCCCCCCCCCccccc
Q psy3602 126 NIRVLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAF-NTTTGIPHGRINLRHGLKSKGLEWSVDTCTAC 204 (390)
Q Consensus 126 tIR~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~AF-~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe 204 (390)
.-|.|-+|-.||.+++ ++..|+.|+...+-|..-+ |..+|-=+..++ +.|.+.. ....+=+
T Consensus 55 ~ar~i~~~a~a~~~~~------------~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~-~~g~~~~-----~~~~l~~ 116 (384)
T cd00249 55 QARQVYCFAVAYLLGW------------RPEWLEAAEHGLEYLDRHGRDPDHGGWYFALD-QDGRPVD-----ATKDLYS 116 (384)
T ss_pred ecHHHHHHHHHHHhcC------------ChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEc-CCCCCcc-----cccchHH
Confidence 3677788888888876 5779999999999999877 434242232222 1343321 1112334
Q ss_pred ccchhhhHHHHHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCeeeecCCCCeeecccCCCCCCchh---hHhHHHHHHh
Q psy3602 205 AGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRDSGVGAGIDSY---YEYCLKAYVL 281 (390)
Q Consensus 205 ~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~gL~~~~i~~~tg~~~~~~~~~Ga~~DS~---YEYLlK~~ll 281 (390)
.+=++.=+..|.+.|||+.|.+.|+++++.+.+.--...|.+-...++.. ..+-+ ..++ .|-|+..+-+
T Consensus 117 ~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~-------~~~~~-~~~~~h~~~all~l~~~ 188 (384)
T cd00249 117 HAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGT-------PPYRG-SNPHMHLLEAMLAAYEA 188 (384)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCC-------CCCCC-CChhHHHHHHHHHHHHH
Confidence 44556667889999999999999999999998743212233222233221 01111 2333 5778999999
Q ss_pred cCcchhHHHHHHHHHHHHHHhhcCC--cceeEeccCCCcccchhhhhhhhhcccceeccCCCCCCchhHHHHHHHHHhcC
Q psy3602 282 LGQDKYLSRFDKHYSAVMKYISRGP--LLIDVHMHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKSTG 359 (390)
Q Consensus 282 ~g~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~L~~f~pG~~~~~~~y~LRPE~iES~fyl~R~Tg 359 (390)
+|+++++++-.+.++.+.+++...+ .+...... .... .-.+.-....||.. -|.+-.+.-++++|+
T Consensus 189 tgd~~~~~~A~~l~~~~~~~~~~~~~G~~~e~~~~--~~~~-~~~~~~~~~~Pgh~---------~e~a~~ll~l~~~~~ 256 (384)
T cd00249 189 TGEQKYLDRADEIADLILDRFIDAESGVVREHFDE--DWNP-YNGDKGRHQEPGHQ---------FEWAWLLLRIASRSG 256 (384)
T ss_pred hCCHHHHHHHHHHHHHHHHHhcCcccCeEEEEECC--CCCC-CcCcCCCcCCCchH---------HHHHHHHHHHHhhcC
Confidence 9999888887777787777765322 12111100 0000 00000000112221 145555666789999
Q ss_pred ChhhHHHHHHHHHHHHHhccc
Q psy3602 360 DPHYLDVGKSVLRALQTHARV 380 (390)
Q Consensus 360 D~~Yre~gW~if~ai~k~~r~ 380 (390)
|+.|++++-++++.+.++.-.
T Consensus 257 ~~~~~~~a~~~~~~~~~~~~d 277 (384)
T cd00249 257 QAWLIEKARRLFDLALALGWD 277 (384)
T ss_pred CHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999988743
No 11
>KOG2204|consensus
Probab=97.18 E-value=0.011 Score=62.11 Aligned_cols=282 Identities=17% Similarity=0.174 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCCCccCcchhhhhhccchhhhcCCHHHHHHHH
Q psy3602 26 EKMTLREESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSLTLIDTLDTLAILGDIEEFEHAT 105 (390)
Q Consensus 26 ~~~~r~~~Vk~~f~haw~~Y~~~A~g~Del~PlS~~g~~~~~~~~~~~~~d~~gg~g~TlVDSLDTL~iMgl~~ef~~a~ 105 (390)
.+--|..++...|...|.- ..-|.+.--.+|-+ +.+-+||++|+.++. +..+...+
T Consensus 13 p~~lr~~~~~~~~l~~~~~-~~Lc~~a~f~~ps~---------------------~~~~~~~~~~~~~~~--~~~v~d~~ 68 (625)
T KOG2204|consen 13 PDVLRLKQIFLIFLGSSFQ-ETLCLGANFRLPSS---------------------SPLLLIDLLDSSYLC--TPLVQDVV 68 (625)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHhhhhheeeCCCC---------------------Cchhheeeccchhhh--hhHHHhcc
Confidence 3466777788888777754 56777776666643 456789999998876 66666665
Q ss_pred HHHHhccCCCCC----ceeccceehhhcccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhhcccCCCCCCccc
Q psy3602 106 KLISENVNFDSD----IVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHG 181 (390)
Q Consensus 106 ~~v~~~~~f~~~----~~vsvFEttIR~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~AF~T~sgiP~~ 181 (390)
+-++ ++|... .....-+.+-|.|-+++|+|.... ++. |++|++.++.++.-|++|+-+|..
T Consensus 69 n~~~--~~~~~~~~~~~~~~~p~~~~~~le~~~s~~~~~~------------~r~-L~~ak~~~~~~~~~~~~~n~~~~~ 133 (625)
T KOG2204|consen 69 NRII--FDFPAPPLAMEVIDAPDITTRVLEGLLSAYEEEM------------DRR-LNKAKEVLPFILRSFDTPNRIPIK 133 (625)
T ss_pred cccc--ccCCCcccccccccccccchhhhhhhHHHhhHHH------------HHH-HHhhhhccccccccccCccccccc
Confidence 5332 344321 233445778899999999999975 455 999999999999999999998876
Q ss_pred eeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHHHH---HHhhcCCCCCCCCeeeecCCCCee
Q psy3602 182 RINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAMDG---LWAARNRDSDLMGTVLNIDSGDWI 258 (390)
Q Consensus 182 ~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~---l~~~~~~~~gL~~~~i~~~tg~~~ 258 (390)
..-.+..... +. ...+....-++-.|-|..++..+. .+|.++.+++.+. -|+... .-.+-++-+.|.+.+-.
T Consensus 134 k~~~~s~l~~-~~--~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~rrekVkemm~hAw~~Yk-~yawg~neLrp~sk~g~ 208 (625)
T KOG2204|consen 134 KPFQKSDLRN-RF--PDRTVPSGQLTPALAFESLDPEDR-NKYRERREKVKEMMKHAWNNYK-KYAWGKNELRPSSKQGH 208 (625)
T ss_pred ccccchhhhh-cC--CCcccCCccCCccccccCcCccch-hHHHHHHHHHHHHHHHHHHhhh-hhcccccccCccccCCc
Confidence 5544432211 00 011112222222677888888887 7888777776554 455432 34566677777765433
Q ss_pred ecccCCC--CCCchhhHhHHHHHHhcCcchhHHHHHHHHHHHHHHhhcCCcceeEeccCCCcccchhhhhhhhhccccee
Q psy3602 259 RRDSGVG--AGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYISRGPLLIDVHMHKPQMTSRNFMDALLAFWPGLQV 336 (390)
Q Consensus 259 ~~~~~~G--a~~DS~YEYLlK~~ll~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~f~pG~~~ 336 (390)
+ ..-+| ..|.+--.-|--.||+.=+++| ++ ..+++...-..-.+... . +..+-=.-|.+
T Consensus 209 s-~~ifG~~~~GATIvDslDTlyim~l~~e~----qE----ar~wi~~~~~~~~v~~~---~---SvFE~NirF~G---- 269 (625)
T KOG2204|consen 209 S-SSIFGAHLKGATIVDSLDTLYIMGLKEEF----QE----ARDWIAYNLDFKTVPIE---L---SVFETNIRFVG---- 269 (625)
T ss_pred c-ccccccCcCCchHHHhhhHHHHHHHHHHH----HH----HHHHHHhhcccccccch---h---heeeeeeeeeh----
Confidence 1 22333 3333333334444444323333 22 22222211000000000 0 00000001333
Q ss_pred ccCCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcccCCc
Q psy3602 337 HWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPCG 383 (390)
Q Consensus 337 ~~~~y~LRPE~iES~fyl~R~TgD~~Yre~gW~if~ai~k~~r~~~G 383 (390)
++-.+|-+|||+.|++.|-++-..|=-..-|+.|
T Consensus 270 -------------Gllsay~lsge~~f~~kA~~igdkLLpAfntptG 303 (625)
T KOG2204|consen 270 -------------GLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTG 303 (625)
T ss_pred -------------hhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCC
Confidence 4455778999999999998888777666666665
No 12
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.17 E-value=0.0011 Score=67.36 Aligned_cols=151 Identities=22% Similarity=0.249 Sum_probs=83.3
Q ss_pred chhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhhcccCCCC---CCccceeecccCCCCCCCCCCCCcccccccch
Q psy3602 132 GLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTT---GIPHGRINLRHGLKSKGLEWSVDTCTACAGTM 208 (390)
Q Consensus 132 GLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~AF~T~s---giP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl 208 (390)
++|.||++++.... + .+.+|++|+++.+.+...+|+.. ||+........+.. .-.+| +- |-.
T Consensus 96 a~l~aye~t~~~~~--~-----~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~~------~Kna~-sN-~~~ 160 (370)
T PF03663_consen 96 ALLRAYELTGDQPS--D-----NPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGYD------YKNAI-SN-GPA 160 (370)
T ss_dssp HHHHHHHHH--H------------HHHHHHHHHHHHHHHTB-SGG-GS-BEEET----TEEE------EEEHH-HH-HHH
T ss_pred HHHHHHHhhCCCcc--h-----HHHHHHHHHHHHHHHHHhcCCccCCCCccccccccCCCCC------ccccc-ch-HHH
Confidence 58999999983210 0 13899999999999999998863 67665221111111 01111 11 112
Q ss_pred hhhHHHHHHhhCChhHHHHHHHHHHHHHh--hcCCCCCCCCeeeecCC-C------CeeecccCCCCCCchhhHhHHHHH
Q psy3602 209 ILEMAALSRLSGLPIFEAKAHRAMDGLWA--ARNRDSDLMGTVLNIDS-G------DWIRRDSGVGAGIDSYYEYCLKAY 279 (390)
Q Consensus 209 ~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~--~~~~~~gL~~~~i~~~t-g------~~~~~~~~~Ga~~DS~YEYLlK~~ 279 (390)
.+=..+|+++|||++|.+.|+++++-+.. +..+..|++-..+++.+ + +|+-+. | .+-.=++-+|
T Consensus 161 ~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNq---G----~~l~a~~~Ly 233 (370)
T PF03663_consen 161 AQLAARLYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQ---G----VFLGAAAYLY 233 (370)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHH---H----HHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHH---H----HHHHHHHHHH
Confidence 22246899999999999999999998877 22234577777775554 1 121110 0 1122356667
Q ss_pred HhcCcc-hhHHHHHHHHHHHHHHhhc
Q psy3602 280 VLLGQD-KYLSRFDKHYSAVMKYISR 304 (390)
Q Consensus 280 ll~g~~-~~~~~~~~~~~~~~~~l~~ 304 (390)
-.++++ .|+++=.+..++++++...
T Consensus 234 ~~T~~~~~yl~~A~~la~~~~~~~~~ 259 (370)
T PF03663_consen 234 NATNDEQTYLDRAEKLADAAINHFFD 259 (370)
T ss_dssp HHH--H-HHHHHHHHHHHHHHHHHEE
T ss_pred HhcCCccHHHHHHHHHHHHHHHHhCC
Confidence 778665 8888878888888887553
No 13
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.02 E-value=0.069 Score=52.21 Aligned_cols=176 Identities=15% Similarity=0.042 Sum_probs=101.8
Q ss_pred cHHHHHHHHHHHHHhhcccC-CCCCCccceeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHH
Q psy3602 154 TGQLLELAKDIGFRLLPAFN-TTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAM 232 (390)
Q Consensus 154 d~~lL~kA~dLad~Ll~AF~-T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~ 232 (390)
++.+++.|++++++|+..-. ...+..+ ..+... ...-......+.+=+..|.+.|||++|.+.|.++.
T Consensus 100 ~~~~l~~a~~~~~~l~~~~~~~~~~~~~-----~~~~~~------~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~ 168 (321)
T cd04791 100 DPALLEAAAKIAELLAEALERGDPALLW-----PDFDRV------DHGLLHGWAGIALFLLRLYKATGDSRYLELAEEAL 168 (321)
T ss_pred ChHHHHHHHHHHHHHHHHhhcccccccc-----ccCCCC------CCccccCcHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 57899999999999976432 1222111 111110 01112344445555788999999999999999999
Q ss_pred HHHHhhcCC-CCCCCCe-eeecCCCCeeecccCCCCCCchhhHhHHHHHHhcCcchhHHHHHHHHHHHHHHhhcCCccee
Q psy3602 233 DGLWAARNR-DSDLMGT-VLNIDSGDWIRRDSGVGAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYISRGPLLID 310 (390)
Q Consensus 233 ~~l~~~~~~-~~gL~~~-~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~ll~g~~~~~~~~~~~~~~~~~~l~~~~~~~~ 310 (390)
+.+.+.... ..|.+.. .-++....|+....+ .-.-|++.+-.++++++.+.-++..+.+.+.....
T Consensus 169 ~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aG-------i~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~~~~----- 236 (321)
T cd04791 169 DKELARAVVDDGGLLQVDEGARLLPYLCSGSAG-------LGLLMLRLEAITGDKRWRDEADGIAHAALSSCYAN----- 236 (321)
T ss_pred HHHHHhhccCCCCceEcCCCCccCcccCCCcHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhccC-----
Confidence 987664322 1232210 001111123333222 23446777878888877765444444443331100
Q ss_pred EeccCCCcccchhhhhhhhhcccceeccCCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcc
Q psy3602 311 VHMHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHAR 379 (390)
Q Consensus 311 ~~~~~~~~~~~~~~~~L~~f~pG~~~~~~~y~LRPE~iES~fyl~R~TgD~~Yre~gW~if~ai~k~~r 379 (390)
.++.-|. .=.++.+-.+++.|+|++|++++-++.+.+-.+-.
T Consensus 237 -----------------~~lchG~----------~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (321)
T cd04791 237 -----------------PGLFSGT----------AGLGAHLNDLAAEGDNALYKAAAERLALYLIATAD 278 (321)
T ss_pred -----------------ccccCCc----------HhHHHHHHhhcccccChHHHHHHHHHHHHhccccC
Confidence 0122221 22567777889999999999999999888876543
No 14
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.65 E-value=0.07 Score=53.13 Aligned_cols=128 Identities=23% Similarity=0.226 Sum_probs=82.2
Q ss_pred cccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhhcccCCCCCCccceeecccCCCCCCCCCCCCcccccccch
Q psy3602 129 VLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTM 208 (390)
Q Consensus 129 ~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~AF~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl 208 (390)
++.||+.+|+.++ |+.+++.|++.++.++......+. .. -..+|-+
T Consensus 30 ~~~gl~~~~~~tg------------d~~~~~~a~~~~~~~~~~~~~~~~--------------------~d--~~~~g~~ 75 (336)
T PF07470_consen 30 FWYGLLEAYEYTG------------DERYLDYAERWADRFIEEDGSDYN--------------------LD--DHDIGFL 75 (336)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHTTTS--------------------CC--GTTHHHH
T ss_pred HHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHhccCCccC--------------------Cc--hhhhHHH
Confidence 6788999999998 678999999999988865432000 00 1223333
Q ss_pred hhhHHHHHHhhCChhHHHHHHHHHHHHHhhcCC-CCCCCCeeeecCCCCeeecccCCCCCCchhh---HhHHHHHHhcCc
Q psy3602 209 ILEMAALSRLSGLPIFEAKAHRAMDGLWAARNR-DSDLMGTVLNIDSGDWIRRDSGVGAGIDSYY---EYCLKAYVLLGQ 284 (390)
Q Consensus 209 ~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~-~~gL~~~~i~~~tg~~~~~~~~~Ga~~DS~Y---EYLlK~~ll~g~ 284 (390)
. ..|.+.|||++|.+.+.++.+.+.+...+ ..|-+.. +.....+ .+ .|+.| +.|.....++|+
T Consensus 76 ~---~~~y~~t~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~--~~~~~~~-----~w---iD~~~M~~p~l~~~~~~tgd 142 (336)
T PF07470_consen 76 L---LDLYERTGDEKYKDAAIQAADWLLARRPRTSDGGFWH--NRPYPNQ-----VW---IDGMYMNLPFLAWAGKLTGD 142 (336)
T ss_dssp H---HHHHHHH-THHHHHHHHHHHHHHHHTSCBECTGCBEC--TTTSTTE-----EE---TTHHHHHHHHHHHHHHHHTG
T ss_pred H---HHHHHHhCCHHHHHHHHHHHHHHHHhCCCCCCCcccc--CCCCCCc-----ee---eccccccHHHHHHHHHHHCC
Confidence 3 33899999999999999999965553332 2232211 1111111 11 78888 889999999999
Q ss_pred chhHHHHHHHHHHHHHHhh
Q psy3602 285 DKYLSRFDKHYSAVMKYIS 303 (390)
Q Consensus 285 ~~~~~~~~~~~~~~~~~l~ 303 (390)
+++.+.-.+.+....+++.
T Consensus 143 ~~~~~~a~~q~~~~~~~~~ 161 (336)
T PF07470_consen 143 PKYLDEAVRQFRLTRKYLY 161 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHB
T ss_pred cHHHHHHHHHHHHHHHhcc
Confidence 9887765555666666655
No 15
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=96.44 E-value=0.029 Score=59.66 Aligned_cols=174 Identities=22% Similarity=0.193 Sum_probs=104.3
Q ss_pred HHHhhcccCCCCCCccceeecccCCCCCCCCCCCCccc--ccccchhhhHHHHHHhhCChhHHHHHHHHHHHHHhhcCCC
Q psy3602 165 GFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCT--ACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRD 242 (390)
Q Consensus 165 ad~Ll~AF~T~sgiP~~~vnl~~g~~~~~~~~~~~~~l--Ae~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~ 242 (390)
-|+|+..|....|+|-..+....-... .....+ +.+|-.+==..++...|+|++..++++++.+.|.+.+. .
T Consensus 25 ~d~ll~~~r~~agl~~~~~~~g~we~~-----~~~~~~~~~~~g~wl~a~a~~~~~~~D~~l~~~~d~~V~~l~~~Q~-~ 98 (520)
T PF07944_consen 25 PDRLLYNFRSHAGLPNFAIAYGGWEGE-----FPGWWFRGHDVGKWLEAAAYAYAYTGDPELKAKADEIVDELAAAQQ-P 98 (520)
T ss_pred HHHHhhhcCcccCCCCccccCCCCccC-----CCCCccCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc-C
Confidence 578888888777777654422111100 111111 44565555567888999999999999999999999764 5
Q ss_pred CCCCCeeeecC----CCCeeec---ccCCCCCCchhhHhHHHHHHhcCcchhHHHHHHHHHHHHHHhhcCCcceeEeccC
Q psy3602 243 SDLMGTVLNID----SGDWIRR---DSGVGAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYISRGPLLIDVHMHK 315 (390)
Q Consensus 243 ~gL~~~~i~~~----tg~~~~~---~~~~Ga~~DS~YEYLlK~~ll~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 315 (390)
+|-++.+.... ...|... ..++|- .++=|+-.|..+|+++.++.-.++.+-+.+. ... +
T Consensus 99 dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~----ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~-~~~-~-------- 164 (520)
T PF07944_consen 99 DGYLGTYPEERNFNPDDRWAPDMHELYCLGK----LLEGLIDYYEATGNERALDVATKLADWVYRR-LSR-L-------- 164 (520)
T ss_pred CceecccccccccccccCCCCCccceehHhH----HHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-hcc-C--------
Confidence 78777665544 2334330 111111 2344677788889887665433333322111 100 0
Q ss_pred CCcccchhhhhhhhhcccceeccCCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHHH
Q psy3602 316 PQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRAL 374 (390)
Q Consensus 316 ~~~~~~~~~~~L~~f~pG~~~~~~~y~LRPE~iES~fyl~R~TgD~~Yre~gW~if~ai 374 (390)
...+... ..+.=.+|..|+++-||++|||++|++.|-.+.+.-
T Consensus 165 ---~~~~~~~-------------~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~ 207 (520)
T PF07944_consen 165 ---GPEPGQK-------------MGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQR 207 (520)
T ss_pred ---CHHHhhc-------------ccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 0000001 123345678899999999999999999998877643
No 16
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=95.78 E-value=0.32 Score=51.83 Aligned_cols=232 Identities=14% Similarity=0.126 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCC---CccCcchhhhhhccchhhhcC------CHH
Q psy3602 29 TLREESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDID---DTLGNFSLTLIDTLDTLAILG------DIE 99 (390)
Q Consensus 29 ~r~~~Vk~~f~haw~~Y~~~A~g~Del~PlS~~g~~~~~~~~~~~~~---d~~gg~g~TlVDSLDTL~iMg------l~~ 99 (390)
+-.++++.+++..|+.-.+ .+-|-|..-... ++... -.+|+.|=+..+=|=-.|||- ..+
T Consensus 242 kY~~~a~~i~~~l~~~~~~----~~GL~p~~i~~~-------~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~d~~~~~ 310 (522)
T PTZ00470 242 KYAEYVDKVMDALFSMKPA----INGLYPIFLNPD-------AGRFCGNHISLGALGDSYYEYLLKQWLYTNGREERYRR 310 (522)
T ss_pred HHHHHHHHHHHHHHhcCCC----CCCccceEECCc-------cCccCCCceeecCCcchhHHHHHHHHHhcCCCcHHHHH
Confidence 3456778888888865221 245555432211 11111 123333333344344455555 356
Q ss_pred HHHHHHHHHHhccCCCC-Cce-----------eccceehhhcccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHH
Q psy3602 100 EFEHATKLISENVNFDS-DIV-----------VSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFR 167 (390)
Q Consensus 100 ef~~a~~~v~~~~~f~~-~~~-----------vsvFEttIR~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~ 167 (390)
-|++|++-|.+++-+.. ++. ....|----++||+++--.-...... ..-++..++.|++|++-
T Consensus 311 ~~~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~aLg~~~~~~~~-----~~~~~~~~~~a~~l~~t 385 (522)
T PTZ00470 311 LFVESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNKMEHLACFAGGMFALGAAINITPD-----DEKSARYMEVGEEVTKT 385 (522)
T ss_pred HHHHHHHHHHHHhcccCCCCcEEEeeccCCcCcchhhhhhhhccchhhhccccccccc-----ccccHHHHHHHHHHHHH
Confidence 68888888877654321 111 12223334556776653221000000 01145688999999998
Q ss_pred hhccc-CCCCCCccceeecccCCCCCCCCC-CCCccc-ccccchhhh-HHHHHHhhCChhHHHHHHHHHHHHHhhcCCCC
Q psy3602 168 LLPAF-NTTTGIPHGRINLRHGLKSKGLEW-SVDTCT-ACAGTMILE-MAALSRLSGLPIFEAKAHRAMDGLWAARNRDS 243 (390)
Q Consensus 168 Ll~AF-~T~sgiP~~~vnl~~g~~~~~~~~-~~~~~l-Ae~Gsl~LE-f~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~ 243 (390)
-.-++ .+|+||.-..+++..+........ ...-.| .| .+| .-+|.|+|||++|.+.+-+++..|.+......
T Consensus 386 C~~~Y~~~~tGl~PE~~~~~~~~~~~~~~~~d~~Y~LRPE----~iES~fylyR~TgD~~yre~gW~~f~ai~k~~rt~~ 461 (522)
T PTZ00470 386 CYETYATSPTGLGPEIFHFDPNSGDISPNVHDSHYILRPE----TVESIFILYRLTGDPKYREWAWKIFQAIEKHCKTEN 461 (522)
T ss_pred HHHHHHhcccCCCCceEEeccCccccccccCCCCCCCChh----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 77777 579999766676654211100000 000011 11 122 34799999999999999999999988643333
Q ss_pred CCCCeeeecCCCCeeecccCCCCCCchhh--HhHHHHHHhcCcch
Q psy3602 244 DLMGTVLNIDSGDWIRRDSGVGAGIDSYY--EYCLKAYVLLGQDK 286 (390)
Q Consensus 244 gL~~~~i~~~tg~~~~~~~~~Ga~~DS~Y--EYLlK~~ll~g~~~ 286 (390)
|.-+ .-|+.+.. ....-.-.||+ |-|-=.||++.++.
T Consensus 462 Gya~-i~dV~~~~-----~~~~D~MeSFflaETLKYlYLlFsd~~ 500 (522)
T PTZ00470 462 GYSG-LKNVLTVH-----PQQDDFQESFFLAETLKYLYLLFQPDH 500 (522)
T ss_pred cccc-ccccCCCC-----CCcCCcccchhHHHHHHHHHheecCcc
Confidence 4333 22443211 11123345654 44444577776653
No 17
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=94.15 E-value=0.37 Score=50.45 Aligned_cols=143 Identities=14% Similarity=0.115 Sum_probs=82.3
Q ss_pred hhhhccchhhhcCC------HHHHHHHHHHHHhccCCC--C-C----------------ceeccceehhhcccchhhH--
Q psy3602 84 TLIDTLDTLAILGD------IEEFEHATKLISENVNFD--S-D----------------IVVSVFETNIRVLGGLLSG-- 136 (390)
Q Consensus 84 TlVDSLDTL~iMgl------~~ef~~a~~~v~~~~~f~--~-~----------------~~vsvFEttIR~LGGLLSA-- 136 (390)
+..+-|=-+|||.- .+-|++|++-|.+++-+. . + .....++----++||+|+-
T Consensus 213 S~YEYLlK~~lL~g~~d~~~~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~ 292 (452)
T PF01532_consen 213 SFYEYLLKMYLLLGGTDEQYRDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGA 292 (452)
T ss_dssp HHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHH
T ss_pred hHHHhhhhhhhhcCccchHHHHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhh
Confidence 33444444455544 677889999888776443 1 1 1222344445667776542
Q ss_pred hhhhhhhccccchhhhhcHHHHHHHHHHHHHhhcccC-CCCCCccceeecccCCCCCCC---CCCCCcc-cccccchhhh
Q psy3602 137 HVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAFN-TTTGIPHGRINLRHGLKSKGL---EWSVDTC-TACAGTMILE 211 (390)
Q Consensus 137 y~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~AF~-T~sgiP~~~vnl~~g~~~~~~---~~~~~~~-lAe~Gsl~LE 211 (390)
..+ + ++..++.|.+|.+--...++ +|||++-..+++........+ ....... ...---|-.|
T Consensus 293 ~~~-~------------~~~~~~~A~~l~~~C~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE 359 (452)
T PF01532_consen 293 KLF-N------------DEGDLELAEELTETCYWLYKSTPTGLGPEIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPE 359 (452)
T ss_dssp HTT-T------------CHHHHHHHHHHHHHHHHHHHTSSSSS--SEEEESCSCG--TEETGGCSCCHHGGG--B-S--H
T ss_pred ccc-C------------chhHHHHHHHHHHHHHHHHHhcccCCCceEEEeeccccccccchhhcccccccccccccchhh
Confidence 222 1 46789999999998777774 689998888887752210000 0000000 0111111123
Q ss_pred ----HHHHHHhhCChhHHHHHHHHHHHHHhhc
Q psy3602 212 ----MAALSRLSGLPIFEAKAHRAMDGLWAAR 239 (390)
Q Consensus 212 ----f~~LS~lTGd~~Y~~~a~~~~~~l~~~~ 239 (390)
+-+|.|+||||+|.+.+-.+++.|.+.-
T Consensus 360 ~iES~fylyR~TgD~~yre~gw~if~ai~k~~ 391 (452)
T PF01532_consen 360 TIESLFYLYRATGDPKYREWGWDIFQAIEKYC 391 (452)
T ss_dssp HHHHHHHHHHHH-BHHHHHHHHHHHHHHHHHT
T ss_pred hhhheeEEEEEcCCchHHHHHHHHHHHHHHhc
Confidence 3479999999999999999999998854
No 18
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=93.47 E-value=0.54 Score=45.94 Aligned_cols=117 Identities=13% Similarity=0.061 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHHHHhhcccCC-CCCCccceeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHH
Q psy3602 154 TGQLLELAKDIGFRLLPAFNT-TTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAM 232 (390)
Q Consensus 154 d~~lL~kA~dLad~Ll~AF~T-~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~ 232 (390)
|+.+++.|+++.+.++..|.. +.|.+. .+.+... . ..- -+....+.+-+..|.++|+|++|.+.++++.
T Consensus 157 d~~~l~~A~~~~~~~~~~~~~~~~g~~~----~~~~~~~-~----~~w-chG~aGi~~~l~~l~~~~~d~~~~~~a~~~~ 226 (321)
T cd04791 157 DSRYLELAEEALDKELARAVVDDGGLLQ----VDEGARL-L----PYL-CSGSAGLGLLMLRLEAITGDKRWRDEADGIA 226 (321)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCCceE----cCCCCcc-C----ccc-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 678999999999999888854 334322 1111111 0 111 2344455666788999999999999999998
Q ss_pred HHHHhhcCCCCCCCCeeeecCCCCeeecccCCCCCCchhhHhHHHHHHhcCcchhHHHHHHHHHHHHHHhh
Q psy3602 233 DGLWAARNRDSDLMGTVLNIDSGDWIRRDSGVGAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYIS 303 (390)
Q Consensus 233 ~~l~~~~~~~~gL~~~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~ll~g~~~~~~~~~~~~~~~~~~l~ 303 (390)
+.+.+... .+..++.+..++ -+.|+..+-.++++++. +....+.+++.
T Consensus 227 ~~~~~~~~------------~~~~lchG~~G~-------~~~l~~~~~~~~~~~~~----~~~~~~~~~~~ 274 (321)
T cd04791 227 HAALSSCY------------ANPGLFSGTAGL-------GAHLNDLAAEGDNALYK----AAAERLALYLI 274 (321)
T ss_pred HHHhhhhc------------cCccccCCcHhH-------HHHHHhhcccccChHHH----HHHHHHHHHhc
Confidence 88875321 111233333333 46677666667776544 44444445543
No 19
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=92.97 E-value=9.3 Score=36.97 Aligned_cols=179 Identities=19% Similarity=0.080 Sum_probs=99.8
Q ss_pred cHHHHHHHHHHHHHhhcccCCC-CCCccceeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHH
Q psy3602 154 TGQLLELAKDIGFRLLPAFNTT-TGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAM 232 (390)
Q Consensus 154 d~~lL~kA~dLad~Ll~AF~T~-sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~ 232 (390)
++.+++.|.+++++|+...... .+.... ...... .....-.+.+....+-+..+.+.|.|+.+.+.++.+.
T Consensus 117 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~----~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~ 188 (343)
T cd04434 117 EEIFLELIRKILDYLLELGKNGDGKIRWP----MYFPEG----RVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALL 188 (343)
T ss_pred CcCHHHHHHHHHHHHHHhhhhccCCCcee----eeccCC----ccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 4568999999999998766432 222111 000000 0001113455566777888899999999999888888
Q ss_pred HHHHhhcCCCCCCCCee----eecCCCCeeecccCCCCCCchhhHhHHHHHHhcCcchhHHHHHHHHHHHHHHhhcCCcc
Q psy3602 233 DGLWAARNRDSDLMGTV----LNIDSGDWIRRDSGVGAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYISRGPLL 308 (390)
Q Consensus 233 ~~l~~~~~~~~gL~~~~----i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~ll~g~~~~~~~~~~~~~~~~~~l~~~~~~ 308 (390)
..+.+......+.++.. -++....|+.+..+ .---|++.+-.++++++.+.-.+..+.+.+.....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wChG~~G-------i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 258 (343)
T cd04434 189 KYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPG-------ILLALLLAYKALGDDKYDEAAEKALELAWKRGLLE--- 258 (343)
T ss_pred HHHHHccCCCCCCCCCCCCCCCccccceecCCChh-------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhcc---
Confidence 87665433222333210 01112234433333 23446777777887766655444444443332210
Q ss_pred eeEeccCCCcccchhhhhhhhhcccceeccCCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy3602 309 IDVHMHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQT 376 (390)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~L~~f~pG~~~~~~~y~LRPE~iES~fyl~R~TgD~~Yre~gW~if~ai~k 376 (390)
. .-.+++-|. .=+++.+..+++.|+|++|++.+-++.+.+-.
T Consensus 259 ----~------------~~~~lChG~----------~G~~~~ll~l~~~~~~~~~~~~a~~~~~~~~~ 300 (343)
T cd04434 259 ----L------------KNPGLCHGI----------AGNLLILLLLYKLTGDLKFLARALALALLLIS 300 (343)
T ss_pred ----C------------CCCCcCcCc----------cchHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 0 011122222 11567788899999999999999887775544
No 20
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=92.60 E-value=8.6 Score=43.07 Aligned_cols=176 Identities=16% Similarity=0.149 Sum_probs=95.2
Q ss_pred cHHHHHHHHHHHHHhhcccC-CCCCCccceeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHH
Q psy3602 154 TGQLLELAKDIGFRLLPAFN-TTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAM 232 (390)
Q Consensus 154 d~~lL~kA~dLad~Ll~AF~-T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~ 232 (390)
++.+++.|.+++++|+..-. .+.+ +. ...... ...-.+....+.+=+..|.+.|||++|.+.+.++.
T Consensus 605 ~~~~l~~a~~~~~~l~~~~~~~~~~-~~-----~~~~~~------~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l 672 (825)
T cd04792 605 SERFLDLALKCGDHLLENASNEDGG-IG-----PAEQPN------LTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKAL 672 (825)
T ss_pred ChHHHHHHHHHHHHHHHhhhhccCC-cc-----cccccc------cccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 57899999999999875321 1112 11 000000 01112344455667888899999999999999998
Q ss_pred HHHHhhcCCCCCCCC-eeeecCCCCeeecccCCCCCCchhhHhHHHHHHh--cCcchhHHHHHHHHHHHHHHhhcCCcce
Q psy3602 233 DGLWAARNRDSDLMG-TVLNIDSGDWIRRDSGVGAGIDSYYEYCLKAYVL--LGQDKYLSRFDKHYSAVMKYISRGPLLI 309 (390)
Q Consensus 233 ~~l~~~~~~~~gL~~-~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~ll--~g~~~~~~~~~~~~~~~~~~l~~~~~~~ 309 (390)
+...+......+-+| ..-+.....|+.+..+++ --+++.+-. .+++.+.+.-.++.+.+.+. + ..
T Consensus 673 ~~~~~~~~~~~~~w~~~~~~~~~~~WChG~~GI~-------lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~---~-~~- 740 (825)
T cd04792 673 KYERRLFSEEGWNWPRKDGNSFSAAWCHGAPGIL-------LARLELLKFNDLDDEELKEEIEIALKTTLKE---G-FG- 740 (825)
T ss_pred HHHHHhcCHhhcCCCCcCcCCCCCcccCCcHHHH-------HHHHHHHhcCccchHHHHHHHHHHHHHHHHh---c-CC-
Confidence 866443211111122 111112234665544443 224444433 34444443333333322221 1 00
Q ss_pred eEeccCCCcccchhhhhhhhhcccceeccCCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcc
Q psy3602 310 DVHMHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHAR 379 (390)
Q Consensus 310 ~~~~~~~~~~~~~~~~~L~~f~pG~~~~~~~y~LRPE~iES~fyl~R~TgD~~Yre~gW~if~ai~k~~r 379 (390)
.-.|++-| .+-.+|.+.++++.|+|++|++.+-..++.+-....
T Consensus 741 ----------------~~~slCHG----------~~Gil~~ll~~~~~~~~~~~~~~a~~~~~~l~~~~~ 784 (825)
T cd04792 741 ----------------NNHSLCHG----------DLGNLEILLYAAKAFGDEKLQELANSLAIKVLSQGK 784 (825)
T ss_pred ----------------CCCeecCC----------CcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 00112222 223679999999999999999999988887765544
No 21
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=92.44 E-value=0.6 Score=46.52 Aligned_cols=159 Identities=18% Similarity=0.111 Sum_probs=90.7
Q ss_pred hcccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhhccc-CCCCCCccceeecccCCCCCCCCC-------CCC
Q psy3602 128 RVLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAF-NTTTGIPHGRINLRHGLKSKGLEW-------SVD 199 (390)
Q Consensus 128 R~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~AF-~T~sgiP~~~vnl~~g~~~~~~~~-------~~~ 199 (390)
=.+-.+|.+|.+++ ++.++++|.+|.+.++.-| +.++|.....++..-......... ..-
T Consensus 143 hl~eA~l~l~~~~~------------~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~p 210 (346)
T PF07221_consen 143 HLLEAFLALYEATG------------DPRYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEP 210 (346)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-H
T ss_pred HHHHHHHHHHHhcc------------CHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCC
Confidence 34556777888876 5789999999999999555 777776555444321111100000 111
Q ss_pred cccccccchhhhHHHHHHhhCChhHHHHHHHHHHHHHhhc-CCCCCCCCeeeecCCCCeeecccCCCCCCchhhHh---H
Q psy3602 200 TCTACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAAR-NRDSDLMGTVLNIDSGDWIRRDSGVGAGIDSYYEY---C 275 (390)
Q Consensus 200 ~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~-~~~~gL~~~~i~~~tg~~~~~~~~~Ga~~DS~YEY---L 275 (390)
...-|..-+++|+. .....+++.+.+.|.++++.....- .+..|-+...+|.... ......-+= --=|. +
T Consensus 211 GH~~E~~wll~~~~-~~~~~~~~~~~~~a~~l~~~~~~~G~d~~~gG~~~~~d~~g~-~~~~~k~wW----~q~Eal~a~ 284 (346)
T PF07221_consen 211 GHDFEWAWLLLEAA-RLTGRGDPDWLERARRLFDFALEHGWDREGGGLFYSVDRDGK-PPDRSKRWW----PQAEALKAL 284 (346)
T ss_dssp HHHHHHHHHHHHHH-HHCHCT-HTHHHHHHHHHHHHHHHHBSTTTSSB-SEEETTS--BSST-EEHH----HHHHHHHHH
T ss_pred chhHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHheEecCCCeEEEEEeCCCC-ccccCcccc----HHHHHHHHH
Confidence 22356666777755 3356788999999988888776632 2222322244554432 211100000 01243 3
Q ss_pred HHHHHhcCcchhHHHHHHHHHHHHHHhhc
Q psy3602 276 LKAYVLLGQDKYLSRFDKHYSAVMKYISR 304 (390)
Q Consensus 276 lK~~ll~g~~~~~~~~~~~~~~~~~~l~~ 304 (390)
+..|-++|++.|++.+.+..+-+.+|+..
T Consensus 285 ~~~~~~tg~~~~~~~~~~~~~~~~~~~~d 313 (346)
T PF07221_consen 285 LAAYELTGDEKYLDWARRVWDYIFRHFID 313 (346)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHTB-
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhCCC
Confidence 66788889999999999999999898853
No 22
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=91.88 E-value=1.2 Score=45.33 Aligned_cols=154 Identities=21% Similarity=0.237 Sum_probs=84.2
Q ss_pred cccchhhhHHHHHHhhCCh-----hHHHHHHHHHHHHHhhcCCCC--CCCCeeeecC---CCCeeecccCCCCCCchhhH
Q psy3602 204 CAGTMILEMAALSRLSGLP-----IFEAKAHRAMDGLWAARNRDS--DLMGTVLNID---SGDWIRRDSGVGAGIDSYYE 273 (390)
Q Consensus 204 e~Gsl~LEf~~LS~lTGd~-----~Y~~~a~~~~~~l~~~~~~~~--gL~~~~i~~~---tg~~~~~~~~~Ga~~DS~YE 273 (390)
+.+=+.|.+.+..++|||+ +|.+.|+++++.+...-.... | |...+.. .+.-.-+.++ ---+..
T Consensus 89 D~aw~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgG--Gi~W~~~~~~~~~~~Kna~s----N~~~~~ 162 (370)
T PF03663_consen 89 DNAWWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLISGWDDTSCGG--GIWWSIDDTNSGYDYKNAIS----NGPAAQ 162 (370)
T ss_dssp HHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHTB-SGG-GS---BEEET----TEEEEEEHHH----HHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHhcCCccCCC--CccccccccCCCCCcccccc----hHHHHH
Confidence 4566789999999999999 999999999999985332211 2 1223321 1100000010 012566
Q ss_pred hHHHHHHhcCcchhHHHHHHHHHHHHH-HhhcCC-cce-eEe-ccCCCcccchhhhhhhhhcccceeccCCCCCCchhHH
Q psy3602 274 YCLKAYVLLGQDKYLSRFDKHYSAVMK-YISRGP-LLI-DVH-MHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLE 349 (390)
Q Consensus 274 YLlK~~ll~g~~~~~~~~~~~~~~~~~-~l~~~~-~~~-~~~-~~~~~~~~~~~~~~L~~f~pG~~~~~~~y~LRPE~iE 349 (390)
-..+.|..+|++.|++.=++.++=+.. .|.... .++ +.. ....+.. .-...-..-.|+ +|+
T Consensus 163 laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~---~~~~~~TYNqG~------------~l~ 227 (370)
T PF03663_consen 163 LAARLYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTN---INKTKWTYNQGV------------FLG 227 (370)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B----TT---HHHHHH------------HHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCc---CCCceechHHHH------------HHH
Confidence 678889999888777665555555555 555222 221 111 1110000 000000111222 688
Q ss_pred HHHHHHHhcCCh-hhHHHHHHHHHHHHHhc
Q psy3602 350 STYFLYKSTGDP-HYLDVGKSVLRALQTHA 378 (390)
Q Consensus 350 S~fyl~R~TgD~-~Yre~gW~if~ai~k~~ 378 (390)
++-+||++|+|+ .|++.|-++.++..++.
T Consensus 228 a~~~Ly~~T~~~~~yl~~A~~la~~~~~~~ 257 (370)
T PF03663_consen 228 AAAYLYNATNDEQTYLDRAEKLADAAINHF 257 (370)
T ss_dssp HHHHHHHHH--H-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHHh
Confidence 999999999888 99999999999987773
No 23
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=91.24 E-value=0.74 Score=48.37 Aligned_cols=104 Identities=17% Similarity=0.124 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhhcccCC----CCCCccceeecccCCCCC-CCCCCCCcccccccchhhhH----HHHHHhhCChhHH
Q psy3602 155 GQLLELAKDIGFRLLPAFNT----TTGIPHGRINLRHGLKSK-GLEWSVDTCTACAGTMILEM----AALSRLSGLPIFE 225 (390)
Q Consensus 155 ~~lL~kA~dLad~Ll~AF~T----~sgiP~~~vnl~~g~~~~-~~~~~~~~~lAe~Gsl~LEf----~~LS~lTGd~~Y~ 225 (390)
...|+.-.+-+|.++..... ||.+-..-++..++++.. ....+....++.+.|= =+| ..||.+||||+|.
T Consensus 13 ~~~l~~v~~y~d~vl~~~~d~~~~~TPLlaDG~D~~t~~pV~W~~pDg~~~~iSNfAsQ-QN~lR~L~~LS~lTgd~~Y~ 91 (557)
T PF06917_consen 13 DERLSAVKQYADNVLQHARDPYENPTPLLADGIDPRTLKPVEWIFPDGRDAPISNFASQ-QNFLRTLVGLSNLTGDPKYQ 91 (557)
T ss_dssp --HHHHHHHHHHHHHHHTB--STS--S-B-SEE-TTT--B-EEE-TTS-EEEEE-GGG--HHHHHHHHHHHHHH--THHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCeeccccccCCCCceEEECCCCCccccccHHHH-HHHHHHHHHHHhccCCHHHH
Confidence 45666666777777766533 344445567777766542 1112344456666663 343 4599999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCC----eeeecCCCCeee
Q psy3602 226 AKAHRAMDGLWAARNRDSDLMG----TVLNIDSGDWIR 259 (390)
Q Consensus 226 ~~a~~~~~~l~~~~~~~~gL~~----~~i~~~tg~~~~ 259 (390)
+.|..+.+..........||+= .+||.+|....+
T Consensus 92 q~A~~~~~yfldh~~D~~GL~~WGGHrFi~L~tl~~eG 129 (557)
T PF06917_consen 92 QRAQEIIRYFLDHFVDDSGLFYWGGHRFINLDTLQIEG 129 (557)
T ss_dssp HHHHHHHHHHHHHSB-TTS-BS-STT-EEETTT--EE-
T ss_pred HHHHHHHHHHHHhccCCCcceeecCceeEecccCCccC
Confidence 9999999988876444458773 477888766543
No 24
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=90.85 E-value=1.6 Score=43.30 Aligned_cols=90 Identities=17% Similarity=-0.007 Sum_probs=53.3
Q ss_pred hhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhhc-ccCCCCCCccceeecccCCCCCCCCCCCCcccccccchhhh-
Q psy3602 134 LSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLP-AFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILE- 211 (390)
Q Consensus 134 LSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~-AF~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LE- 211 (390)
+-.|.+++ |+.+++.|+++++.++. .+.++.|-... .. .....+..+.--+.++
T Consensus 77 ~~~y~~t~------------d~~y~~~~~~~a~~~l~~~~~~~~G~~~~------~~------~~~~~~wiD~~~M~~p~ 132 (336)
T PF07470_consen 77 LDLYERTG------------DEKYKDAAIQAADWLLARRPRTSDGGFWH------NR------PYPNQVWIDGMYMNLPF 132 (336)
T ss_dssp HHHHHHH-------------THHHHHHHHHHHHHHHHTSCBECTGCBEC------TT------TSTTEEETTHHHHHHHH
T ss_pred HHHHHHhC------------CHHHHHHHHHHHHHHHHhCCCCCCCcccc------CC------CCCCceeeccccccHHH
Confidence 55788876 67899999999995554 44545443221 11 1122333443322333
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHHHhh-cCCCCCCCC
Q psy3602 212 MAALSRLSGLPIFEAKAHRAMDGLWAA-RNRDSDLMG 247 (390)
Q Consensus 212 f~~LS~lTGd~~Y~~~a~~~~~~l~~~-~~~~~gL~~ 247 (390)
+.+.+++|||++|.+.|.+-++...+. ..+..||+=
T Consensus 133 l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~~tGl~~ 169 (336)
T PF07470_consen 133 LAWAGKLTGDPKYLDEAVRQFRLTRKYLYDPETGLYY 169 (336)
T ss_dssp HHHHHHHHTGHHHHHHHHHHHHHHHHHHB-TTTSSBE
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHhccCCCCCcee
Confidence 456899999999999888766666553 223345553
No 25
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.91 E-value=0.75 Score=48.45 Aligned_cols=73 Identities=18% Similarity=0.228 Sum_probs=55.3
Q ss_pred cccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhhcccCCCCCCccceeecccCCCCCCCCCCCCcccccccch
Q psy3602 129 VLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTM 208 (390)
Q Consensus 129 ~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~AF~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl 208 (390)
.+-|++.+|.+|| .+.+|+-+..+||-+...|+..++ +. -..++-+-+
T Consensus 136 Lieg~va~~qaTG------------kr~lldV~~rlADhi~tvfgp~~~-----------q~---------~g~~gH~ei 183 (589)
T COG3533 136 LIEGGVAAHQATG------------KRRLLDVVCRLADHIATVFGPEED-----------QV---------PGYCGHPEI 183 (589)
T ss_pred HHhhhhHHHHhhC------------cchHHHHHHHHHHhhhhhcCcccc-----------cc---------ccccCCCch
Confidence 4678899999998 367999999999999988873322 11 113455566
Q ss_pred hhhHHHHHHhhCChhHHHHHHHHHH
Q psy3602 209 ILEMAALSRLSGLPIFEAKAHRAMD 233 (390)
Q Consensus 209 ~LEf~~LS~lTGd~~Y~~~a~~~~~ 233 (390)
-|.+..|.++||+++|.++|.+-..
T Consensus 184 elAl~~Ly~~Tg~~rYL~LA~~Fi~ 208 (589)
T COG3533 184 ELALAELYRLTGDQRYLDLARRFIH 208 (589)
T ss_pred hHHHHHHHHHhcChHHHHHHHHHHH
Confidence 7778899999999999999987543
No 26
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=89.05 E-value=0.66 Score=45.65 Aligned_cols=181 Identities=19% Similarity=0.269 Sum_probs=97.7
Q ss_pred cHHHHHHHHHHHHHhhcccCCCC--CCccceeecccCCCCCCCCCCCCcccccccchhhhHHHHH-HhhCChhHHHHHHH
Q psy3602 154 TGQLLELAKDIGFRLLPAFNTTT--GIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALS-RLSGLPIFEAKAHR 230 (390)
Q Consensus 154 d~~lL~kA~dLad~Ll~AF~T~s--giP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS-~lTGd~~Y~~~a~~ 230 (390)
++.+++.+.+++++|+.....-. ..|... ....+.. ...-.+....+.+=+..+. +.|+++++.+.+++
T Consensus 124 ~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~-------~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~ 195 (355)
T PF05147_consen 124 DPKYLDIIEKILEKLLESIINDDPSENQIGS-EWKEGFI-------NLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQ 195 (355)
T ss_dssp CHHS-HHHHHHHHHCCCHHCCCHTCCGSSSH-HCHTTBE-------E-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhcccccCCCcc-ccCCCCc-------cCCccccHHHHHHHHHHhhhcccCchhHHHHHHH
Confidence 46788999999999987765311 001100 0000000 0011123334445556777 69999999999999
Q ss_pred HHHHHHhhcCCCCCCCCeeeecC----CCCeeecccCCCCCCchhhHhHHHHHHhcCcchhHHHHHHHHHHHHHHhhcCC
Q psy3602 231 AMDGLWAARNRDSDLMGTVLNID----SGDWIRRDSGVGAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYISRGP 306 (390)
Q Consensus 231 ~~~~l~~~~~~~~gL~~~~i~~~----tg~~~~~~~~~Ga~~DS~YEYLlK~~ll~g~~~~~~~~~~~~~~~~~~l~~~~ 306 (390)
+.+.+.+.....++-+|...+.. ...|+.+..++. =-+++.+-..+++.+.+...++.+.+.+. +.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~~Gi~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 265 (355)
T PF05147_consen 196 ILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYGSPGIL-------LALLKAYKILDDEEYDEEAEQALESILQK---GL 265 (355)
T ss_dssp HHHHHHHC--TGCCT--SECTHHHHHC--SSSSSHHHHH-------HHHHHHHHHCT-HHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhcCcccCCCCCCCCccccccccccccCcHHHH-------HHHHHHHHhhchHHHHHHHHHHHHHHHHc---cc
Confidence 99999886643334477665544 566776655542 22345555556666666555555555442 11
Q ss_pred cceeEeccCCCcccchhhhhhhhhcccceeccCCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcc
Q psy3602 307 LLIDVHMHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHAR 379 (390)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~L~~f~pG~~~~~~~y~LRPE~iES~fyl~R~TgD~~Yre~gW~if~ai~k~~r 379 (390)
.. ..+ |++=|.. + .++.+..+++.|++++|++.+.++++.+.....
T Consensus 266 ~~-----~~~------------~lCHG~a---G-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
T PF05147_consen 266 FL-----NNP------------SLCHGTA---G-------ILEILLDLYKYTGDEEYKELANKLIQKLLSYYD 311 (355)
T ss_dssp CT-----TSS-------------STTSHH---H-------HHHHHHHHHHHH--HCCHHHHHHHHHHHCTTCC
T ss_pred cC-----CCC------------ceeCchH---H-------hHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 10 000 1111111 1 678899999999999999999999888765543
No 27
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=88.82 E-value=2 Score=39.97 Aligned_cols=135 Identities=21% Similarity=0.316 Sum_probs=74.7
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCeeeecCCCCeeec------ccCCCCCCch---hhHhHHHHHHhc
Q psy3602 212 MAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRR------DSGVGAGIDS---YYEYCLKAYVLL 282 (390)
Q Consensus 212 f~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~gL~~~~i~~~tg~~~~~------~~~~Ga~~DS---~YEYLlK~~ll~ 282 (390)
|.+..++|||++|.++|+++++.+..... ..|..-..-+ .+-|-.- ...+-+..=| -|+|- ..+
T Consensus 39 l~RAy~~t~d~~Yl~aA~~al~~f~~~~~-~GG~~~~~~~--~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~----~~~ 111 (189)
T PF06662_consen 39 LARAYQLTGDEKYLDAAKKALNSFKVPVE-EGGVLATFKN--KYPWYEEYPTTPPSYVLNGFIYSLIGLYDYY----RLT 111 (189)
T ss_pred HHHHHHhHCCHHHHHHHHHHHHHhcChHh-hCCeeEEecC--CcEeEeecCCCCCCEEeehHHHHHHHHHHHH----Hhc
Confidence 67999999999999999999998865432 2344322211 0222221 1111111111 24433 456
Q ss_pred CcchhHHHHHHHHHHHHHHhhc---CCcceeEeccCCCcccchhhhhhhhhcccceeccCCCCCCchhHHHHHHHHHhcC
Q psy3602 283 GQDKYLSRFDKHYSAVMKYISR---GPLLIDVHMHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKSTG 359 (390)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~f~pG~~~~~~~y~LRPE~iES~fyl~R~Tg 359 (390)
++++..+.|++-++++++.|.. +.+.. .-..|+..--++....+..+.+ -|+=+-.||.+|+
T Consensus 112 ~~~~A~~lf~~Gl~sLk~~Lp~yD~G~wS~------------Ydl~h~~~~~~~~~a~~~YH~l---Hi~qL~~L~~it~ 176 (189)
T PF06662_consen 112 GDEEAKELFDKGLKSLKKMLPLYDTGSWSR------------YDLRHFTLGNAPNIARWDYHRL---HIQQLKWLYSITG 176 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCCch------------hhccccccccCcCcCcchHHHH---HHHHHHHHHHhcC
Confidence 6788899999999999988752 11110 0011222111111111111111 3556778999999
Q ss_pred ChhhHHHHH
Q psy3602 360 DPHYLDVGK 368 (390)
Q Consensus 360 D~~Yre~gW 368 (390)
||.+++.+-
T Consensus 177 d~~f~~~a~ 185 (189)
T PF06662_consen 177 DPIFKEYAE 185 (189)
T ss_pred CHHHHHHHH
Confidence 999998874
No 28
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.78 E-value=6.6 Score=43.00 Aligned_cols=149 Identities=17% Similarity=0.127 Sum_probs=90.3
Q ss_pred hcccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhhcccCCCCCCccceeecccCCCCCCCCCCCCcccccccc
Q psy3602 128 RVLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGT 207 (390)
Q Consensus 128 R~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~AF~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gs 207 (390)
=.+-+|+.|+-+.+ ++.+++.|+.+++.++..+... .++... ..|... ....+.+-+-
T Consensus 415 lmi~aLa~a~~~~~------------d~~~l~~A~~~~~fi~~~l~~~-rl~~~~---~~G~a~------~~g~leDYA~ 472 (667)
T COG1331 415 LMIAALAEAGRVLG------------DPEYLEAAERAADFILDNLYVD-RLLRRY---RGGEAA------VAGLLEDYAF 472 (667)
T ss_pred HHHHHHHHHHHHcC------------ChHHHHHHHHHHHHHHHhhccc-chheee---ecCccc------ccccchhHHH
Confidence 34556666666665 6889999999999999887655 565432 223322 2334667777
Q ss_pred hhhhHHHHHHhhCChhHHHHHHHHHHHHHhhc-CCCCCCCCe-----eeecCCCCeeecccCCCCCCchhhHhHHHHHHh
Q psy3602 208 MILEMAALSRLSGLPIFEAKAHRAMDGLWAAR-NRDSDLMGT-----VLNIDSGDWIRRDSGVGAGIDSYYEYCLKAYVL 281 (390)
Q Consensus 208 l~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~-~~~~gL~~~-----~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~ll 281 (390)
+++=...|.++|+|.+|.+.|.+..+.+...- ....|++-. .+-.....+.++ ...+++ -..=.-|++..++
T Consensus 473 ~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~-a~~S~n-a~~~~~L~~Ls~l 550 (667)
T COG1331 473 LILGLLALYEATGDLAYLEKAIELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDG-ATPSGN-AVAAQALLRLSLL 550 (667)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCC-CCCCHH-HHHHHHHHHHHhh
Confidence 88889999999999999999988777765432 222343211 011111111111 111111 1234568999999
Q ss_pred cCcchhHHHHHHHHHHHHH
Q psy3602 282 LGQDKYLSRFDKHYSAVMK 300 (390)
Q Consensus 282 ~g~~~~~~~~~~~~~~~~~ 300 (390)
+|+.+|.+.=.+..+++..
T Consensus 551 tg~~~y~e~A~~~L~a~~~ 569 (667)
T COG1331 551 TGDARYLEAAEDILQAFAG 569 (667)
T ss_pred cCchhHHHHHHHHHHHHHH
Confidence 9998777664444444433
No 29
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=87.67 E-value=5.7 Score=39.57 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=81.6
Q ss_pred hhhhHHHHHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCeeeecC----CCCeeecccCCCCCCchhhHhHHHHHHhcC
Q psy3602 208 MILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNID----SGDWIRRDSGVGAGIDSYYEYCLKAYVLLG 283 (390)
Q Consensus 208 l~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~gL~~~~i~~~----tg~~~~~~~~~Ga~~DS~YEYLlK~~ll~g 283 (390)
..+-+..+.+.++|+.+.+.++++.+.+.+... ..|-+|..++.. .-.|+.+..++ -.-|++.+..++
T Consensus 170 I~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~-~~g~w~~~~~~~~~~~~~~wChG~~Gi-------~~~l~~~~~~~~ 241 (343)
T cd04794 170 ILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQF-PSGNFPSSLGNRKRDRLVQWCHGAPGI-------VYLLAKAYLVFK 241 (343)
T ss_pred HHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhc-cCCCCCCccCCCCCCccccccCCCchH-------HHHHHHHHHHhC
Confidence 334477788889999999999999999877643 346677655421 12355443333 345777777778
Q ss_pred cchhHHHHHHHHHHHHHHhhcCCcceeEeccCCCcccchhhhhhhhhcccceeccCCCCCCchhHHHHHHHHHhcCChhh
Q psy3602 284 QDKYLSRFDKHYSAVMKYISRGPLLIDVHMHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKSTGDPHY 363 (390)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~f~pG~~~~~~~y~LRPE~iES~fyl~R~TgD~~Y 363 (390)
++++.+.-.++.+ .+.+..... .. .|+.-|. +=..+.+..+|+.|+|++|
T Consensus 242 ~~~~~~~~~~~~~----~~~~~g~~~----~~------------~~lCHG~----------~G~~~~lL~~~~~~~~~~~ 291 (343)
T cd04794 242 EEQYLEAAIKCGE----LIWKRGLLK----KG------------PGLCHGI----------AGNAYAFLLLYRLTGDLKY 291 (343)
T ss_pred CHHHHHHHHHHHH----HHHHhCCcc----CC------------CccccCc----------cchHHHHHHHHHHhCcHHH
Confidence 7655543223222 222111110 00 1122222 1146888899999999999
Q ss_pred HHHHHHHHHHHHHhc
Q psy3602 364 LDVGKSVLRALQTHA 378 (390)
Q Consensus 364 re~gW~if~ai~k~~ 378 (390)
+++|-.+.+.+-+..
T Consensus 292 ~~~a~~~~~~~~~~~ 306 (343)
T cd04794 292 LYRACKFAEFLINYG 306 (343)
T ss_pred HHHHHHHHHHHhcch
Confidence 999999988766553
No 30
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=87.39 E-value=23 Score=35.94 Aligned_cols=205 Identities=20% Similarity=0.194 Sum_probs=117.1
Q ss_pred cccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhhcccCCCCCCccceeecccCCCCCCCCCCCCcccccccch
Q psy3602 129 VLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTM 208 (390)
Q Consensus 129 ~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~AF~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl 208 (390)
.|=|+.-+|+-|+ |+.+|+-.+...|-.+- ..|+|--.||-- +.
T Consensus 41 ~lyGv~~~~eAT~------------d~~yl~~l~~~~d~~i~----~~g~~~~~id~i----------------~~---- 84 (357)
T COG4225 41 FLYGVARAYEATG------------DAEYLDYLKTWFDEQID----EGGLPPRNIDHI----------------AA---- 84 (357)
T ss_pred hHHHHHHHHHHcC------------cHHHHHHHHHHHHhhhc----cCCCCccchhhh----------------cc----
Confidence 4668889999987 67899999999887662 234554433311 00
Q ss_pred hhhHHHHHHhhCChhHHHHHHHHHHHHHhhcCCCCC-CCCeeeecCCCCeeecccCCCCCCchhhHhHHHHHHhcCcchh
Q psy3602 209 ILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSD-LMGTVLNIDSGDWIRRDSGVGAGIDSYYEYCLKAYVLLGQDKY 287 (390)
Q Consensus 209 ~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~g-L~~~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~ll~g~~~~ 287 (390)
-+=+..|++.||||+|.+.+.+..+.+........| +.-....|. --|.++-. +|+ =.++|.-.++|++++
T Consensus 85 g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~~p~-Q~W~DtL~-Ma~------~F~ak~g~~~~~~e~ 156 (357)
T COG4225 85 GLTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVKYPH-QMWLDTLY-MAG------LFLAKYGQVTGRPEY 156 (357)
T ss_pred CceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCccccccCchh-Hhhhcchh-hhh------HHHHHHHHHhCCHHH
Confidence 111346999999999999999988888764322233 221111111 11332211 010 247888888898877
Q ss_pred HHHHHHHHHHHHHHhhcC--CcceeEeccCCCcccchhhhhhh---hhcc-cce--------------------------
Q psy3602 288 LSRFDKHYSAVMKYISRG--PLLIDVHMHKPQMTSRNFMDALL---AFWP-GLQ-------------------------- 335 (390)
Q Consensus 288 ~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~---~f~p-G~~-------------------------- 335 (390)
.+-=........+||... .+++......+. .+|.++.+ +||. |+-
T Consensus 157 ~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~---~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~ 233 (357)
T COG4225 157 FDEALYQFSLHEKYLRDPETGLYYHGWDEDGT---MPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNV 233 (357)
T ss_pred HHHHHHHHHHHHHHccCCCcCceEEeeccCCC---CccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 665333344455666532 233332222111 13333222 3442 110
Q ss_pred ---------------eccCCCCC--C----chhHHHHHHHHHhcC-------ChhhHHHHHHHHHHHHHhcccC
Q psy3602 336 ---------------VHWGQHPL--R----PEFLESTYFLYKSTG-------DPHYLDVGKSVLRALQTHARVP 381 (390)
Q Consensus 336 ---------------~~~~~y~L--R----PE~iES~fyl~R~Tg-------D~~Yre~gW~if~ai~k~~r~~ 381 (390)
-.|.+-+. | ||+-=|..++|-+-+ +++|...+-+.+++|..+ ..+
T Consensus 234 l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~-i~~ 306 (357)
T COG4225 234 LRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGH-IDE 306 (357)
T ss_pred HHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhh-ccc
Confidence 00111111 3 478888999998765 999999999999999884 443
No 31
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=86.33 E-value=18 Score=40.59 Aligned_cols=175 Identities=19% Similarity=0.131 Sum_probs=98.1
Q ss_pred cHHHHHHHHHHHHHhhcccCCCCCCccceeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHHH
Q psy3602 154 TGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAMD 233 (390)
Q Consensus 154 d~~lL~kA~dLad~Ll~AF~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~ 233 (390)
++.+++.|.++.+.+...-. +... ...++..+.+.+=+..|.+.|+++.|.+.+.++.+
T Consensus 559 ~~~~~~~a~~~~~~l~~~~~-----~~~~----------------~D~~~G~aGii~~Ll~l~~~~~~~~~l~~a~~~~~ 617 (825)
T cd04792 559 DDRLLNLAKEILDLIDELIE-----KDEK----------------LDFISGAAGLILVLLSLYELFLSERFLDLALKCGD 617 (825)
T ss_pred CHHHHHHHHHHHHHHHHhhc-----cccC----------------CCEeeecHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 46688888888887653211 0000 01123333444446688999999999999999999
Q ss_pred HHHhhcCCCC-CCCCeeeecCCCCeeecccCCCCCCchhhHhHHHHHHhcCcchhHHHHHHHHHHHHHHhh-cCCcceeE
Q psy3602 234 GLWAARNRDS-DLMGTVLNIDSGDWIRRDSGVGAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYIS-RGPLLIDV 311 (390)
Q Consensus 234 ~l~~~~~~~~-gL~~~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~ll~g~~~~~~~~~~~~~~~~~~l~-~~~~~~~~ 311 (390)
.+.+...... +.. +... ....++.-+.-..--.|++.+..++++++.+.-.++.+...+... ....+.
T Consensus 618 ~l~~~~~~~~~~~~-----~~~~---~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~-- 687 (825)
T cd04792 618 HLLENASNEDGGIG-----PAEQ---PNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWP-- 687 (825)
T ss_pred HHHHhhhhccCCcc-----cccc---cccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCC--
Confidence 9876432221 221 1110 122355455555556788888888888777655444443222211 101110
Q ss_pred eccCCCcccchhhhhhhhhcccceeccCCCCCCchhHHHHHHHHHh--cCChhhHHHHHHHHHHHHHh
Q psy3602 312 HMHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKS--TGDPHYLDVGKSVLRALQTH 377 (390)
Q Consensus 312 ~~~~~~~~~~~~~~~L~~f~pG~~~~~~~y~LRPE~iES~fyl~R~--TgD~~Yre~gW~if~ai~k~ 377 (390)
.. .......++.-| -|=++-+...++++ ..|+.+.+.+-++.+.+.+.
T Consensus 688 ---~~-----~~~~~~~~WChG----------~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~ 737 (825)
T cd04792 688 ---RK-----DGNSFSAAWCHG----------APGILLARLELLKFNDLDDEELKEEIEIALKTTLKE 737 (825)
T ss_pred ---Cc-----CcCCCCCcccCC----------cHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHh
Confidence 00 000011122222 34456677888898 68999999888888876654
No 32
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=85.83 E-value=6.2 Score=39.26 Aligned_cols=141 Identities=19% Similarity=0.190 Sum_probs=83.4
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHHHhhcC-CCCCCCCeeeecCCCCeeecccCCCCCCchhhHhHHHHHHhcCcchhHHH
Q psy3602 212 MAALSRLSGLPIFEAKAHRAMDGLWAARN-RDSDLMGTVLNIDSGDWIRRDSGVGAGIDSYYEYCLKAYVLLGQDKYLSR 290 (390)
Q Consensus 212 f~~LS~lTGd~~Y~~~a~~~~~~l~~~~~-~~~gL~~~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~ll~g~~~~~~~ 290 (390)
|..+++ +|+|.|.++|++.++.|.+.-. ...|-+--.++ .|...+. ....-+++|.=+-+-.+..+|++++++.
T Consensus 30 fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~--~~~~~~~--~~~~Y~~af~l~ala~~~~tg~~~~~~~ 104 (346)
T PF07221_consen 30 FARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLD--DGGPLDP--QKDLYDQAFALLALAEARATGDPEALEL 104 (346)
T ss_dssp HHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEE--TTEEEE----EEHHHHHHHHHHHHHHHCTT-TTHHHH
T ss_pred HHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeC--CCCCCcc--ccchHHHHHHHHHHHHHHHhCChhHHHH
Confidence 666777 8999999999999999987432 22343333333 2222221 1112223333333334667788888877
Q ss_pred HHHHHHHHHHHhhcCC--cceeEeccCCCcccchhhhhhhhhcccceeccCCCCCCc--hhHHHHHHHHHhcCChhhHHH
Q psy3602 291 FDKHYSAVMKYISRGP--LLIDVHMHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRP--EFLESTYFLYKSTGDPHYLDV 366 (390)
Q Consensus 291 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~L~~f~pG~~~~~~~y~LRP--E~iES~fyl~R~TgD~~Yre~ 366 (390)
=.++++.+.+++.... .+..... +... .. ++ +.| -++|.+.-++++|+|+.|++.
T Consensus 105 A~~~~~~l~~~~~d~~~g~~~~~~~--~~~~-~~---------r~---------~n~~mhl~eA~l~l~~~~~~~~~~~~ 163 (346)
T PF07221_consen 105 AEQTLEFLERRFWDPEGGGYRESFD--PDWS-PP---------RG---------QNPHMHLLEAFLALYEATGDPRYLDR 163 (346)
T ss_dssp HHHHHHHHHHHTEETTTTEE--EET--TTSS-CB---------EE---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCcceeccC--Cccc-cC---------CC---------CChhHHHHHHHHHHHHhccCHHHHHH
Confidence 6777777777765421 2111110 0000 00 11 122 268988899999999999999
Q ss_pred HHHHHHHHHHhc
Q psy3602 367 GKSVLRALQTHA 378 (390)
Q Consensus 367 gW~if~ai~k~~ 378 (390)
+-++++.+....
T Consensus 164 a~~l~~~~~~~f 175 (346)
T PF07221_consen 164 AEELLDLFLDRF 175 (346)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH
Confidence 999999988543
No 33
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=85.48 E-value=9.4 Score=39.24 Aligned_cols=144 Identities=19% Similarity=0.229 Sum_probs=81.0
Q ss_pred ccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhhccc-CCCCCCccc----eeecccCCCCCCCCCCCCccccc
Q psy3602 130 LGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAF-NTTTGIPHG----RINLRHGLKSKGLEWSVDTCTAC 204 (390)
Q Consensus 130 LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~AF-~T~sgiP~~----~vnl~~g~~~~~~~~~~~~~lAe 204 (390)
+-.+|.+|+.++ ++..|++|.+||++++.-| |.++|.=.. ..|+..+... ....-..--|
T Consensus 180 ~EA~LA~~e~~~------------~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg---~~~ePGH~fE 244 (388)
T COG2942 180 LEAMLAAYEATG------------EKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRG---RGIEPGHQFE 244 (388)
T ss_pred HHHHHHHHhccC------------chhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCccc---CCCCCchHHH
Confidence 335888999987 4679999999999999888 788875332 2333333222 1111112234
Q ss_pred ccchhhhHHHHHHhhCChhHHHHHHHHHHHHHhhc-CCCCCCCCeeee-------cCCCCeeecccCCCCCCchhhHhHH
Q psy3602 205 AGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAAR-NRDSDLMGTVLN-------IDSGDWIRRDSGVGAGIDSYYEYCL 276 (390)
Q Consensus 205 ~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~-~~~~gL~~~~i~-------~~tg~~~~~~~~~Ga~~DS~YEYLl 276 (390)
-+.|+|. +.+..|+..-...|.+.++...+.. .+..|.+-..++ +..-.|.+ =|+ +
T Consensus 245 W~~Lll~---~a~~~~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ------------~E~-l 308 (388)
T COG2942 245 WAWLLLD---IARRRGRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQ------------TEA-L 308 (388)
T ss_pred HHHHHHH---HHHHhchhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChH------------HHH-H
Confidence 4444444 4556667777777777776655421 111121111111 11112222 245 4
Q ss_pred HHHHhc----C-cchhHHHHHHHHHHHHHHhhc
Q psy3602 277 KAYVLL----G-QDKYLSRFDKHYSAVMKYISR 304 (390)
Q Consensus 277 K~~ll~----g-~~~~~~~~~~~~~~~~~~l~~ 304 (390)
|..++. | ++.|.+.|.++.+...+|+..
T Consensus 309 ~AA~ala~~~~~~~~y~~~~~R~~~~~~~hl~d 341 (388)
T COG2942 309 KAAVALAETTGARERYWQWYARAWDYLWWHLDD 341 (388)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHhcCC
Confidence 544443 4 567888888888888888764
No 34
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.76 E-value=7.1 Score=41.39 Aligned_cols=119 Identities=20% Similarity=0.226 Sum_probs=70.8
Q ss_pred hhCChhHHHHHHHHHHHHHhhcCCCCCCCCeeeecCCCCeeecccCCCCCCchhh--------HhHHHHHHhcCcchhHH
Q psy3602 218 LSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRDSGVGAGIDSYY--------EYCLKAYVLLGQDKYLS 289 (390)
Q Consensus 218 lTGd~~Y~~~a~~~~~~l~~~~~~~~gL~~~~i~~~tg~~~~~~~~~Ga~~DS~Y--------EYLlK~~ll~g~~~~~~ 289 (390)
-+|||.-++.++++.+.+.+.+. ..|-++......-. .-.+|-..+.-. |=++-.+.++|+..+++
T Consensus 81 ~~~dp~Lekr~D~vi~~~a~~Qd-edGYl~~~~q~~~p-----e~Rw~nlr~~HelY~aghLieg~va~~qaTGkr~lld 154 (589)
T COG3533 81 NKGDPELEKRIDEVVEELARAQD-EDGYLGGWFQADFP-----EERWGNLRPNHELYCAGHLIEGGVAAHQATGKRRLLD 154 (589)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhc-cCCcccceeeccCc-----hhhhhccccchHHHHhHHHHhhhhHHHHhhCcchHHH
Confidence 47999999999999999998764 57877764432211 112222222211 11222222333222221
Q ss_pred HHHHHHHHHHHHhhcCCcceeEeccCCCcccchhhhhhhhhcccceeccCCCCCCchhHHHHHHHHHhcCChhhHHHHHH
Q psy3602 290 RFDKHYSAVMKYISRGPLLIDVHMHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKS 369 (390)
Q Consensus 290 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~f~pG~~~~~~~y~LRPE~iES~fyl~R~TgD~~Yre~gW~ 369 (390)
| ...+.||+...+++..-.-.-|.--||.=|.+-=|||+||||+|.+.|--
T Consensus 155 ---------------------V--------~~rlADhi~tvfgp~~~q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~ 205 (589)
T COG3533 155 ---------------------V--------VCRLADHIATVFGPEEDQVPGYCGHPEIELALAELYRLTGDQRYLDLARR 205 (589)
T ss_pred ---------------------H--------HHHHHHhhhhhcCccccccccccCCCchhHHHHHHHHHhcChHHHHHHHH
Confidence 1 11344666554443322334577889999999999999999999999865
Q ss_pred HH
Q psy3602 370 VL 371 (390)
Q Consensus 370 if 371 (390)
+.
T Consensus 206 Fi 207 (589)
T COG3533 206 FI 207 (589)
T ss_pred HH
Confidence 53
No 35
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=77.52 E-value=79 Score=31.40 Aligned_cols=182 Identities=12% Similarity=0.113 Sum_probs=91.9
Q ss_pred cHHHHHHHHHHHHHhhcccCCC-CCCccceeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCCh-hHHHHHHHH
Q psy3602 154 TGQLLELAKDIGFRLLPAFNTT-TGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLP-IFEAKAHRA 231 (390)
Q Consensus 154 d~~lL~kA~dLad~Ll~AF~T~-sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~-~Y~~~a~~~ 231 (390)
|+.+++.|.+.++.++++...+ ...+ .-.++......+=+..|.+.|++. ...+.+.++
T Consensus 70 d~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~ 130 (343)
T cd04794 70 DEDEVDEFLSKFLQLLESVVSPDSGLP-------------------DELLYGRAGYLYALLFLNKKFGFKKIPSSLIKSI 130 (343)
T ss_pred ChHHHHHHHHHHHHHHHHHhhcccCCc-------------------hhhhccHHHHHHHHHHHHHHcCcCCCCHHHHHHH
Confidence 5778999999999888654211 0000 011333334445577888888843 344555665
Q ss_pred HHHHHhh-c---CCCCCCCCeeeecCCCCeeec-ccCCCCCCchhhHhHHHHHHhcCcchhHHHHHHHHHHHHHHhhcCC
Q psy3602 232 MDGLWAA-R---NRDSDLMGTVLNIDSGDWIRR-DSGVGAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYISRGP 306 (390)
Q Consensus 232 ~~~l~~~-~---~~~~gL~~~~i~~~tg~~~~~-~~~~Ga~~DS~YEYLlK~~ll~g~~~~~~~~~~~~~~~~~~l~~~~ 306 (390)
.+.+.+. + ......+|...+ |.+. ..++.-+.-..-=-|++.+..++++++.+.-.++++-..+...+..
T Consensus 131 ~~~il~~~~~~~~~~~~~~~~~~~-----~~~~~~~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g 205 (343)
T cd04794 131 CDAILESGRTGAAKYRAPCPLMYE-----WHGKEYLGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSG 205 (343)
T ss_pred HHHHHHHHHHhhhccCCCCCcccc-----ccCceecchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCC
Confidence 5554432 1 110011222111 1110 1222112222222366777666777766665555555444321111
Q ss_pred cceeEeccCCCcccchhhhhhhhhcccceeccCCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy3602 307 LLIDVHMHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQT 376 (390)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~L~~f~pG~~~~~~~y~LRPE~iES~fyl~R~TgD~~Yre~gW~if~ai~k 376 (390)
.+... .+. ...+.+.++.= --|=++.++..++++++|++|++.+.++.+.+-+
T Consensus 206 ~w~~~---~~~----~~~~~~~~wCh----------G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (343)
T cd04794 206 NFPSS---LGN----RKRDRLVQWCH----------GAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWK 258 (343)
T ss_pred CCCCc---cCC----CCCCccccccC----------CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 11000 000 00112222222 2456788999999999999999999888876654
No 36
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=74.99 E-value=82 Score=30.31 Aligned_cols=228 Identities=17% Similarity=0.105 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhccCCCCCceeccceehhhcccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhhcccCCCCCC
Q psy3602 99 EEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGI 178 (390)
Q Consensus 99 ~ef~~a~~~v~~~~~f~~~~~vsvFEttIR~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~AF~T~sgi 178 (390)
+...++++++.+.++-......++|. -++|++.+...... .. .++.+++.+.++.+.+......+...
T Consensus 25 ~~~~~~~~~i~~~~~~~~~~~~~~~~----G~~Gi~~~l~~l~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (343)
T cd04434 25 DLAHKALEYIVKSLSSLPDTDISLFS----GLAGIAYALAALSK--GL------GDQELLKELLELLLLLVELILEDLKD 92 (343)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeeeec----chHHHHHHHHHHHH--Hc------CCHHHHHHHHHHHHHhhhhhhcccCC
Confidence 33455566665443322112445554 44555544332211 00 15678888888888876543221000
Q ss_pred ccceeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCeeeecCCCCee
Q psy3602 179 PHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWI 258 (390)
Q Consensus 179 P~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~gL~~~~i~~~tg~~~ 258 (390)
....-++....+.+=+..+.+.|+++.+.+.+.++.+.|.+............. .... .
T Consensus 93 ------------------~~~d~~~G~aG~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~--~ 151 (343)
T cd04434 93 ------------------LNYDLLSGLAGLLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPM-YFPE--G 151 (343)
T ss_pred ------------------CCcceeechHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhhccCCCceee-eccC--C
Confidence 001112333344455567788889999999999999998775422111111000 0000 0
Q ss_pred ecccCCCCCCchhhHhHHHHHHhcCcchhHHHHHHHHHHHHHHhhc---CCcceeEeccCCCcccchhhhhhhhhcccce
Q psy3602 259 RRDSGVGAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYISR---GPLLIDVHMHKPQMTSRNFMDALLAFWPGLQ 335 (390)
Q Consensus 259 ~~~~~~Ga~~DS~YEYLlK~~ll~g~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~f~pG~~ 335 (390)
....++.-+.-..--.|++.+..+.++.+.+. .+.+.+++.. ....... +.. .........++.-
T Consensus 152 ~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~wCh--- 219 (343)
T cd04434 152 RVNLGLAHGLAGILLALLLLYKKTVDKSLEAL----IKALLKYERRLQDDSGGFWW----PSR-SNGGNRFLVAWCH--- 219 (343)
T ss_pred ccccchhhhhHHHHHHHHHHHHhcCChhHHHH----HHHHHHHHHHccCCCCCCCC----CCC-CCCCccccceecC---
Confidence 11234444444455567777766655444433 3333333221 1100000 000 0000011111211
Q ss_pred eccCCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhc
Q psy3602 336 VHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHA 378 (390)
Q Consensus 336 ~~~~~y~LRPE~iES~fyl~R~TgD~~Yre~gW~if~ai~k~~ 378 (390)
--|=++-++..+++.|+|+++.+.+-++.+.+-+..
T Consensus 220 -------G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (343)
T cd04434 220 -------GAPGILLALLLAYKALGDDKYDEAAEKALELAWKRG 255 (343)
T ss_pred -------CChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhh
Confidence 234467778899999999999999988887665544
No 37
>KOG2431|consensus
Probab=73.70 E-value=11 Score=39.07 Aligned_cols=93 Identities=20% Similarity=0.338 Sum_probs=52.4
Q ss_pred HHHHHHhcCcchhHHHHHHHHHHHHHHhhcCCcc---eeEeccCCCcccchh-hhhhhhhcccceeccCCCCCCchhHHH
Q psy3602 275 CLKAYVLLGQDKYLSRFDKHYSAVMKYISRGPLL---IDVHMHKPQMTSRNF-MDALLAFWPGLQVHWGQHPLRPEFLES 350 (390)
Q Consensus 275 LlK~~ll~g~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~-~~~L~~f~pG~~~~~~~y~LRPE~iES 350 (390)
||..|-|+|+..|++.=.+.-+..+... +.|.. .+|..+.+.....++ -++-++=+.-+|..++
T Consensus 184 LLSayHLsg~~~~L~kA~dlgdrLl~AF-~sps~IPysdVnL~~~~A~~p~~~~~SStaEvttiQlEfr----------- 251 (546)
T KOG2431|consen 184 LLSAYHLSGDEMFLNKAEDLGDRLLPAF-SSPSPIPYSDVNLGTGTAHPPRWTGDSSTAEVTTIQLEFR----------- 251 (546)
T ss_pred hhhhhccccchhHHHHHHHHHHHHHHhh-cCCCCCCcceeecCCCcccCCCCCCccchhhheeeeeeHH-----------
Confidence 6778888888766654333333333332 33322 244444332222222 1222222233333322
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHhcccC
Q psy3602 351 TYFLYKSTGDPHYLDVGKSVLRALQTHARVP 381 (390)
Q Consensus 351 ~fyl~R~TgD~~Yre~gW~if~ai~k~~r~~ 381 (390)
||=|+|||++|.+.|-++++-|-+..+..
T Consensus 252 --~Ls~ltgd~kY~~~a~kv~ehih~~~~~~ 280 (546)
T KOG2431|consen 252 --YLSRLTGDPKYEELAEKVTEHIHGLGKKK 280 (546)
T ss_pred --HHHhhcCCchHHHHHHHHHHHHhccCccc
Confidence 67899999999999999999998875444
No 38
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=70.75 E-value=94 Score=35.44 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhhccc-------CC-CCCCccceeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHH
Q psy3602 155 GQLLELAKDIGFRLLPAF-------NT-TTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEA 226 (390)
Q Consensus 155 ~~lL~kA~dLad~Ll~AF-------~T-~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~ 226 (390)
..|++.|.++||-|+.-- .+ -.|||.. +. |..- ..+..+..---.-..+.|=|.+|..+||...|.+
T Consensus 596 e~~v~~a~~ige~i~~~~I~g~~~~~~~~~~is~~---~~-g~~~-~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ 670 (963)
T COG4403 596 EYFVSIANDIGEHIIKQLIIGVDDFETSLIWISTT---FE-GQGW-SLSPLGNDLYDGSAGIALFFAYLALVTGKDYYKE 670 (963)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCcceEEEEEee---ec-cceE-EeecCCchhhcCcchHHHHHHHHHHhcChHHHHH
Confidence 468999999999877421 11 1133322 11 1110 0000011111122345788999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCeeeecCCCCeeecccCCCCCCc-hhhHhHHHHHHhcCcchhHH
Q psy3602 227 KAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRDSGVGAGID-SYYEYCLKAYVLLGQDKYLS 289 (390)
Q Consensus 227 ~a~~~~~~l~~~~~~~~gL~~~~i~~~tg~~~~~~~~~Ga~~D-S~YEYLlK~~ll~g~~~~~~ 289 (390)
.|.++...+.+.-+ +.+.|. ..|. ..|+ ||+--|.|.+.++++.....
T Consensus 671 ia~~~L~~~~~sv~--~~~~~~----~iga---------~~G~~g~~yal~~I~~~~~~~~l~~ 719 (963)
T COG4403 671 IAIKALQDSRKSVN--NNLNPI----NIGA---------FTGLSGYFYALWKIYSVTRDNYLIQ 719 (963)
T ss_pred HHHHHHHHHHHhhh--hccCCc----cccc---------ccccchhhhhhHHHHHhcccHHHHH
Confidence 99999888877532 244441 1121 2233 34444778888888765443
No 39
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=70.41 E-value=61 Score=32.94 Aligned_cols=147 Identities=19% Similarity=0.231 Sum_probs=89.7
Q ss_pred cHHHHHHHHHHHHHhhcccCCCCCCccceeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHHH
Q psy3602 154 TGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAMD 233 (390)
Q Consensus 154 d~~lL~kA~dLad~Ll~AF~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~ 233 (390)
|+.+|+.|+++++.|+.-=.|.-|.-.-.++ .+.+.|.. .|=-+|.+ +.++++.||+|.|.+-+.+-+.
T Consensus 97 ~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~------~p~Q~W~D--tL~Ma~~F---~ak~g~~~~~~e~~d~~~~QF~ 165 (357)
T COG4225 97 DPRYLEAAIKLASWLVHEPRTKEGGFQHKVK------YPHQMWLD--TLYMAGLF---LAKYGQVTGRPEYFDEALYQFS 165 (357)
T ss_pred CHHHHHHHHHHHHHHhhCcccCCCccccccC------chhHhhhc--chhhhhHH---HHHHHHHhCCHHHHHHHHHHHH
Confidence 6899999999999988644555553221111 11112221 13334444 5678899999999999888766
Q ss_pred HHHh-hcCCCCCCCCeeeecCC-CCeeecccC---CCCCCchhhHhHHH-HHHhcCc-----chhHHHHHHHHHHHHHHh
Q psy3602 234 GLWA-ARNRDSDLMGTVLNIDS-GDWIRRDSG---VGAGIDSYYEYCLK-AYVLLGQ-----DKYLSRFDKHYSAVMKYI 302 (390)
Q Consensus 234 ~l~~-~~~~~~gL~~~~i~~~t-g~~~~~~~~---~Ga~~DS~YEYLlK-~~ll~g~-----~~~~~~~~~~~~~~~~~l 302 (390)
.-.+ .+.+.+||+=.-.|.+. +.|.++.++ +=|++-+.|-.-|- .--+... ..+.+..++.+++++++-
T Consensus 166 ~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Q 245 (357)
T COG4225 166 LHEKYLRDPETGLYYHGWDEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQ 245 (357)
T ss_pred HHHHHccCCCcCceEEeeccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhh
Confidence 5554 34455688876666543 455554444 33677777777443 3333332 245666778888888886
Q ss_pred hcCCcceeE
Q psy3602 303 SRGPLLIDV 311 (390)
Q Consensus 303 ~~~~~~~~~ 311 (390)
....++..+
T Consensus 246 de~GlW~ti 254 (357)
T COG4225 246 DESGLWHTI 254 (357)
T ss_pred ccccchhhh
Confidence 655554444
No 40
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=69.94 E-value=10 Score=35.24 Aligned_cols=124 Identities=21% Similarity=0.176 Sum_probs=67.6
Q ss_pred hhhcCCHHHHHHHHHHHHhccCCC--CCceecccee------------hhhcccc----hhhHhhhhhhhccccchhhhh
Q psy3602 92 LAILGDIEEFEHATKLISENVNFD--SDIVVSVFET------------NIRVLGG----LLSGHVLAEYFKLNTDLMQWY 153 (390)
Q Consensus 92 L~iMgl~~ef~~a~~~v~~~~~f~--~~~~vsvFEt------------tIR~LGG----LLSAy~Ls~~~~~~~~~~~~y 153 (390)
.|.+=-++.|-+|.+-..+.+.-. ..+.++.|.. ..=||-| |++-|++...... +.
T Consensus 42 Ay~~t~d~~Yl~aA~~al~~f~~~~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~~~~~--~~---- 115 (189)
T PF06662_consen 42 AYQLTGDEKYLDAAKKALNSFKVPVEEGGVLATFKNKYPWYEEYPTTPPSYVLNGFIYSLIGLYDYYRLTGD--EE---- 115 (189)
T ss_pred HHHhHCCHHHHHHHHHHHHHhcChHhhCCeeEEecCCcEeEeecCCCCCCEEeehHHHHHHHHHHHHHhcCC--HH----
Confidence 333434566655555444544332 2344433332 2347777 6667888742211 11
Q ss_pred cHHHHHHHHHHHHHhhcccCCCCCCccceeecccCCCCCCCCCCCCccccc---ccchhhhHHHHHHhhCChhHHHHHHH
Q psy3602 154 TGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTAC---AGTMILEMAALSRLSGLPIFEAKAHR 230 (390)
Q Consensus 154 d~~lL~kA~dLad~Ll~AF~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe---~Gsl~LEf~~LS~lTGd~~Y~~~a~~ 230 (390)
-..+.++..+--..++|.||+.++--+ +++.-... ....+|. ...-+--+..|+.+||||.|.+.++|
T Consensus 116 A~~lf~~Gl~sLk~~Lp~yD~G~wS~Y---dl~h~~~~------~~~~~a~~~YH~lHi~qL~~L~~it~d~~f~~~a~r 186 (189)
T PF06662_consen 116 AKELFDKGLKSLKKMLPLYDTGSWSRY---DLRHFTLG------NAPNIARWDYHRLHIQQLKWLYSITGDPIFKEYAER 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchh---hccccccc------cCcCcCcchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 145777777777888999999765433 33221110 0001110 11224446789999999999998876
No 41
>KOG2787|consensus
Probab=64.31 E-value=87 Score=31.76 Aligned_cols=122 Identities=23% Similarity=0.205 Sum_probs=71.5
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCCCCCCeeeecCCCCeeecccCC--CCCCchhhHhHHHHHHhcCcchhHHHHHHHHHHH
Q psy3602 221 LPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRDSGV--GAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAV 298 (390)
Q Consensus 221 d~~Y~~~a~~~~~~l~~~~~~~~gL~~~~i~~~tg~~~~~~~~~--Ga~~DS~YEYLlK~~ll~g~~~~~~~~~~~~~~~ 298 (390)
+|+-.+-++...+.+.+++.+ +|=+|..++-.+.+ -+.| ||.|-- -=|.|.|..++.++|++.-.++.+.+
T Consensus 240 ~~~~~~dVK~sldym~~~rfp-sGNyP~s~~~~~dr----LVhWcHGApGv~--~~L~kAy~VF~Eekyl~aa~ecadvV 312 (403)
T KOG2787|consen 240 QPALLKDVKGSLDYMIQNRFP-SGNYPSSEGNKRDR----LVHWCHGAPGVA--YTLAKAYQVFKEEKYLEAAMECADVV 312 (403)
T ss_pred chhHHHhhhhHHHHHHHccCC-CCCCCcccCCCcce----eeeeccCCchHH--HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344456677777877777654 67777666443322 2333 444422 34899999999888877655555544
Q ss_pred HHH-hh-cCCcceeEeccCCCcccchhhhhhhhhcccceeccCCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH----
Q psy3602 299 MKY-IS-RGPLLIDVHMHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLR---- 372 (390)
Q Consensus 299 ~~~-l~-~~~~~~~~~~~~~~~~~~~~~~~L~~f~pG~~~~~~~y~LRPE~iES~fyl~R~TgD~~Yre~gW~if~---- 372 (390)
-+. |. +++..- | | +.-..|. ..-|||+|+|.+|..+|-++.+
T Consensus 313 W~rGlLkkg~Gic----h------------------G--vaGNaYv--------FLsLyRLT~d~kYlyRA~kFae~lld 360 (403)
T KOG2787|consen 313 WKRGLLKKGVGIC----H------------------G--VAGNAYV--------FLSLYRLTGDMKYLYRAKKFAEWLLD 360 (403)
T ss_pred HHhhhhhcCCccc----c------------------c--ccCchhh--------hHhHHHHcCcHHHHHHHHHHHHHHHh
Confidence 333 22 222210 0 0 1112341 2348999999999999977665
Q ss_pred -HHHHhcccC
Q psy3602 373 -ALQTHARVP 381 (390)
Q Consensus 373 -ai~k~~r~~ 381 (390)
.++..||++
T Consensus 361 ~~~~~g~r~p 370 (403)
T KOG2787|consen 361 YGFSHGCRTP 370 (403)
T ss_pred hhhhccCCCC
Confidence 345667776
No 42
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=57.27 E-value=2.4e+02 Score=29.13 Aligned_cols=149 Identities=15% Similarity=0.101 Sum_probs=86.0
Q ss_pred hhcCCHHHHHHHHHHHHhccCCCC--------------CceeccceehhhcccchhhHhhhhhhhccccchhhhhcHHHH
Q psy3602 93 AILGDIEEFEHATKLISENVNFDS--------------DIVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWYTGQLL 158 (390)
Q Consensus 93 ~iMgl~~ef~~a~~~v~~~~~f~~--------------~~~vsvFEttIR~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL 158 (390)
.+++-+++|++..+|.++++.-.. ++...|-..+-=-=|=|.=||.|.-..+ .+-++.++
T Consensus 65 v~a~Dr~~Fd~Lw~Wt~~~L~~~d~~~~L~aW~w~~~~~g~~~v~D~NsASDGDl~IA~ALl~A~~------~W~~~~Y~ 138 (376)
T PRK11097 65 LVANDRAAFDKLLNWTENNLAQGDLTARLPAWLWGKKADGTWGVLDANSASDADLWIAYSLLEAGR------LWKEPRYT 138 (376)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCcccCceeEeccCCCCCcCCCCCCCCChHHHHHHHHHHHHHH------hhCcHHHH
Confidence 458999999999999988764221 1222233333222344666777753211 13356799
Q ss_pred HHHHHHHHHhhccc-CCCCCCccceeecccCCCCCCCCCCCCcccccccchhhh-HHHHHHhhCChhHHHHHHHHHHHHH
Q psy3602 159 ELAKDIGFRLLPAF-NTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILE-MAALSRLSGLPIFEAKAHRAMDGLW 236 (390)
Q Consensus 159 ~kA~dLad~Ll~AF-~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LE-f~~LS~lTGd~~Y~~~a~~~~~~l~ 236 (390)
+.|..|..+|+.-= .+-.|+ ..+-+ -|.........-.. ...=+.+. |..+++.++|+...+.++...+.|.
T Consensus 139 ~~A~~ll~~I~~~ev~~~~g~--g~~Ll-PG~~gF~~~~~~~~---NPSY~~p~~~~~fa~~~~~~~W~~l~~~~~~lL~ 212 (376)
T PRK11097 139 ALGTALLKRIAREEVVTVPGL--GSMLL-PGPVGFADDGSWRL---NPSYLPPQLLRRFARFLPGGPWAALAATNARLLL 212 (376)
T ss_pred HHHHHHHHHHHHhcccccCCC--ceeec-cccccccCCCCCeE---CcccccHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 99999999888631 111232 11110 11100000000001 11112333 6778999999999999999999998
Q ss_pred hhcCCCCCCCCeeeecCCC
Q psy3602 237 AARNRDSDLMGTVLNIDSG 255 (390)
Q Consensus 237 ~~~~~~~gL~~~~i~~~tg 255 (390)
+.. ..||+|+.+..+.+
T Consensus 213 ~~a--~tGL~PDWv~~~~~ 229 (376)
T PRK11097 213 ETA--PKGFSPDWVRYQKG 229 (376)
T ss_pred Hhc--ccCCCCcceeEcCC
Confidence 865 47999998877643
No 43
>KOG2787|consensus
Probab=55.63 E-value=33 Score=34.70 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhccCCCCCceeccceehhhc--c----cchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhhcc
Q psy3602 98 IEEFEHATKLISENVNFDSDIVVSVFETNIRV--L----GGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPA 171 (390)
Q Consensus 98 ~~ef~~a~~~v~~~~~f~~~~~vsvFEttIR~--L----GGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll~A 171 (390)
.++.+..++++.++ .|. +++...-|.+-|- + |.==-||.|.....- +-.+.||+.|.++||.+-.
T Consensus 244 ~~dVK~sldym~~~-rfp-sGNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~V------F~Eekyl~aa~ecadvVW~- 314 (403)
T KOG2787|consen 244 LKDVKGSLDYMIQN-RFP-SGNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQV------FKEEKYLEAAMECADVVWK- 314 (403)
T ss_pred HHhhhhHHHHHHHc-cCC-CCCCCcccCCCcceeeeeccCCchHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHH-
Confidence 56677788888653 444 3444333433221 1 222224444431100 1146799999999997642
Q ss_pred cCCCCCCccceeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHHHHHHhh
Q psy3602 172 FNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAA 238 (390)
Q Consensus 172 F~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~ 238 (390)
.|+=--.+-+-.|... .---|..|.++|||++|.-.|.+-.+.+.+.
T Consensus 315 ----rGlLkkg~GichGvaG----------------NaYvFLsLyRLT~d~kYlyRA~kFae~lld~ 361 (403)
T KOG2787|consen 315 ----RGLLKKGVGICHGVAG----------------NAYVFLSLYRLTGDMKYLYRAKKFAEWLLDY 361 (403)
T ss_pred ----hhhhhcCCcccccccC----------------chhhhHhHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 2332111112222222 1223889999999999999999988887663
No 44
>PF12060 DUF3541: Domain of unknown function (DUF3541); InterPro: IPR021928 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length.
Probab=52.98 E-value=8.2 Score=36.44 Aligned_cols=20 Identities=35% Similarity=0.601 Sum_probs=17.1
Q ss_pred HHHhcCChhhHHHHHHHHHH
Q psy3602 354 LYKSTGDPHYLDVGKSVLRA 373 (390)
Q Consensus 354 l~R~TgD~~Yre~gW~if~a 373 (390)
|||.||||||....|.=.-.
T Consensus 36 mYRqT~d~kYaaa~~~D~~r 55 (227)
T PF12060_consen 36 MYRQTGDPKYAAAVWSDMAR 55 (227)
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 89999999999999964443
No 45
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=51.28 E-value=87 Score=31.53 Aligned_cols=81 Identities=7% Similarity=0.077 Sum_probs=52.1
Q ss_pred hhhhHHHHHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCeeeecCCCCeeecccCCCCCCchhhHhHHHHHHhcCcchh
Q psy3602 208 MILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRDSGVGAGIDSYYEYCLKAYVLLGQDKY 287 (390)
Q Consensus 208 l~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~gL~~~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~ll~g~~~~ 287 (390)
+.+-+..+++.++|+.|.+.+.++.+.+++... +.. +..+..++.+.+++ -+.|++.+-.++++++
T Consensus 249 i~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~----~~~~~~lChG~~G~-------~~~l~~~~~~~~~~~~ 314 (382)
T cd04793 249 IARALQLAGKALDDQKLQEAAEKILKAALKDKK---QLS----KLISPTLCHGLAGL-------LFIFYLLYKDTNTNEF 314 (382)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChh---hhc----cCCCCCcCccHHHH-------HHHHHHHHHHhCCcHH
Confidence 344556778889999999999999888775321 110 11222344433333 3778889988998887
Q ss_pred HHHHHHHHHHHHHHh
Q psy3602 288 LSRFDKHYSAVMKYI 302 (390)
Q Consensus 288 ~~~~~~~~~~~~~~l 302 (390)
.+.-....+.++...
T Consensus 315 ~~~a~~~~~~~l~~~ 329 (382)
T cd04793 315 KSALEYLLNQIISSY 329 (382)
T ss_pred HHHHHHHHHHHHHHh
Confidence 776555555555543
No 46
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=49.24 E-value=2.9e+02 Score=27.73 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=76.0
Q ss_pred HHHHHHhh-CChhHHHHHHHHHHHHHhhcCC--CCCCCCeee------ec-------CCCCeeecccCCCCCCchhhHhH
Q psy3602 212 MAALSRLS-GLPIFEAKAHRAMDGLWAARNR--DSDLMGTVL------NI-------DSGDWIRRDSGVGAGIDSYYEYC 275 (390)
Q Consensus 212 f~~LS~lT-Gd~~Y~~~a~~~~~~l~~~~~~--~~gL~~~~i------~~-------~tg~~~~~~~~~Ga~~DS~YEYL 275 (390)
+..+.+.+ +++.+.+++.++.+.+.+.... .....|..+ +. ....|+.+..+++ .=|
T Consensus 181 L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~-------~~l 253 (382)
T cd04793 181 LALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIA-------RAL 253 (382)
T ss_pred HHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHH-------HHH
Confidence 46666777 8999999999998877664311 112333221 11 1123443333332 234
Q ss_pred HHHHHhcCcchhHHHHHHHHHHHHHHhhcCCcceeEeccCCCcccchhhhhhhhhcccceeccCCCCCCchhHHHHHHHH
Q psy3602 276 LKAYVLLGQDKYLSRFDKHYSAVMKYISRGPLLIDVHMHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLY 355 (390)
Q Consensus 276 lK~~ll~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~f~pG~~~~~~~y~LRPE~iES~fyl~ 355 (390)
++.+-.++++.+.+.-.+..+.+.+.... .. ... + .++.-|. +=.++.+..+|
T Consensus 254 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~----------~--~~lChG~----------~G~~~~l~~~~ 306 (382)
T cd04793 254 QLAGKALDDQKLQEAAEKILKAALKDKKQ-LS----KLI----------S--PTLCHGL----------AGLLFIFYLLY 306 (382)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhChhh-hc----cCC----------C--CCcCccH----------HHHHHHHHHHH
Confidence 45555567777666544443333322110 00 000 0 0122221 22568888999
Q ss_pred HhcCChhhHHHHHHHHHHHHHhcccC
Q psy3602 356 KSTGDPHYLDVGKSVLRALQTHARVP 381 (390)
Q Consensus 356 R~TgD~~Yre~gW~if~ai~k~~r~~ 381 (390)
+.|+|++|++.+-+.++.+-..++.+
T Consensus 307 ~~~~~~~~~~~a~~~~~~~l~~~~~~ 332 (382)
T cd04793 307 KDTNTNEFKSALEYLLNQIISSYSEE 332 (382)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998877776654
No 47
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=45.73 E-value=17 Score=34.73 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=23.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHhcccC
Q psy3602 352 YFLYKSTGDPHYLDVGKSVLRALQTHARVP 381 (390)
Q Consensus 352 fyl~R~TgD~~Yre~gW~if~ai~k~~r~~ 381 (390)
=.+|++|||++|.+.+-+++.++-..+++.
T Consensus 66 Alay~~Tgd~~YA~~a~~iL~~W~~~~~~~ 95 (272)
T PF05426_consen 66 ALAYYLTGDEKYADKAAEILNAWALNYKTR 95 (272)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHCTTTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHccCccc
Confidence 356999999999999999999996666653
No 48
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=40.69 E-value=1.4e+02 Score=29.79 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=34.1
Q ss_pred hhhHHHHHHh---hCChhHHHHHHHHHHHHHhhcCCCCCCCCeeeecCCC
Q psy3602 209 ILEMAALSRL---SGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSG 255 (390)
Q Consensus 209 ~LEf~~LS~l---TGd~~Y~~~a~~~~~~l~~~~~~~~gL~~~~i~~~tg 255 (390)
+-|...|+++ |+|++|.++++++.+.|.+.+.+ .|=+|.+. |..+
T Consensus 47 ~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQyp-nGGWPQf~-p~~~ 94 (290)
T TIGR02474 47 VTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYP-NGGWPQFY-PLKG 94 (290)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCC-CCCcCccc-CCcC
Confidence 5566666655 99999999999999999998754 56677765 4433
No 49
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=39.85 E-value=64 Score=32.48 Aligned_cols=151 Identities=17% Similarity=0.003 Sum_probs=77.5
Q ss_pred hhhcCCHHHHHHHHHHHHhccCCCCC----------ceeccceehhhcccchhhHhhhhhhhccccchhhhhcHHHHHHH
Q psy3602 92 LAILGDIEEFEHATKLISENVNFDSD----------IVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELA 161 (390)
Q Consensus 92 L~iMgl~~ef~~a~~~v~~~~~f~~~----------~~vsvFEttIR~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA 161 (390)
..+|+-+++|++..+|.++++.-..+ +...+-..+-=-=|=|.=||.|--..+.=++. ...++..|
T Consensus 65 av~~~d~~~Fd~l~~wt~~~l~~~~~~L~aW~~~~~~~~~~~~~nsAtDgDl~iA~ALl~A~~~Wg~~----~~~y~~~A 140 (342)
T PF01270_consen 65 AVLMDDRATFDRLWNWTKANLSRRNDGLMAWRWGPDGNSQVGDPNSATDGDLDIAYALLLAARRWGDG----AYNYLAEA 140 (342)
T ss_dssp HHHTTHHHHHHHHHHHHHHHCBTTTTSSBESEEETTSTSSCEECSEBHHHHHHHHHHHHHHHHHHTSS----SSHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhccCCCCCeeEEECCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCc----chhHHHHH
Confidence 35788999999999999888762111 11111111111113344455554211100000 12456677
Q ss_pred HHHHHHhhcccCCCCCCccceeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHHHHHHhhcCC
Q psy3602 162 KDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNR 241 (390)
Q Consensus 162 ~dLad~Ll~AF~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~ 241 (390)
+.+...++..-.. .| .--|.-|...........+.++-.- .-=|..+++.|+|+...+.+++..+.|.+....
T Consensus 141 ~~~~~~i~~~~v~-~g----~~~llpG~~~f~~~~~~~~npSY~~--~pa~~~f~~~~~~~~W~~v~~~~~~ll~~~~~~ 213 (342)
T PF01270_consen 141 LAIINAIKTHEVN-PG----RYVLLPGDWGFNSDDYWTTNPSYFM--PPAFRAFAAATGDPRWNEVADSSYALLQKASFP 213 (342)
T ss_dssp HHHHHHHHHHHEE-TT----EEEECSSSSSCBTTSEEEEEGGGS---HHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhheeC-CC----ceEEeccccccCCCCceEeChhhcc--HHHHHHHHHhcCChhHHHHHHHHHHHHHHhccc
Confidence 7666654432211 23 1111112111000000111222211 134778899999999999999999988887665
Q ss_pred CCCCCCeeeecC
Q psy3602 242 DSDLMGTVLNID 253 (390)
Q Consensus 242 ~~gL~~~~i~~~ 253 (390)
..||+|+.+..+
T Consensus 214 ~tGL~PDw~~~~ 225 (342)
T PF01270_consen 214 KTGLPPDWVVYD 225 (342)
T ss_dssp TTTB--SSEETT
T ss_pred CCCCCchheeec
Confidence 689999988776
No 50
>KOG1748|consensus
Probab=39.85 E-value=12 Score=32.74 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCCCccCcchhhhhhccchh-hhcCCHHHHH
Q psy3602 31 REESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSLTLIDTLDTL-AILGDIEEFE 102 (390)
Q Consensus 31 ~~~Vk~~f~haw~~Y~~~A~g~Del~PlS~~g~~~~~~~~~~~~~d~~gg~g~TlVDSLDTL-~iMgl~~ef~ 102 (390)
+++|.+-+...-..|-+. ..|.+.|-+. -++.+| .|||||- .||+|.+||.
T Consensus 51 k~~v~~RVl~VVk~~dki--~~~k~~~~s~----------------f~~DLG---lDSLD~VEiVMAlEEEFg 102 (131)
T KOG1748|consen 51 KKEVVDRVLDVVKKFDKI--DPSKLTTDSD----------------FFKDLG---LDSLDTVEIVMALEEEFG 102 (131)
T ss_pred HHHHHHHHHHHHHHhhcC--CccccchhhH----------------HHHhcC---CcccccchhhhhhHHHhC
Confidence 455666677666677442 3333443332 122345 4999997 7899999993
No 51
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=36.09 E-value=57 Score=37.11 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHHHHhhcccCCCCCCccceeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHH
Q psy3602 154 TGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAM 232 (390)
Q Consensus 154 d~~lL~kA~dLad~Ll~AF~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~ 232 (390)
.+.+|+.|.-+|++|+.-- ++.--+ . . ....-...+..+.+-+..|.+.||+++|.+++....
T Consensus 760 epk~l~~ais~~~~l~~~~---v~~d~s-------~-~-----~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~~ 822 (963)
T COG4403 760 EPKFLELAISLGRILMEKI---VGNDSS-------E-T-----VLLGFSHGASGIILTLLKLYEATGEESLLKKIKELL 822 (963)
T ss_pred chHHHHHHHHHHHHHHHHh---hccccc-------c-c-----eecccccchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4789999999999999422 111000 0 0 000112445567888999999999999999887643
No 52
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=34.25 E-value=48 Score=27.75 Aligned_cols=28 Identities=21% Similarity=0.538 Sum_probs=21.4
Q ss_pred HHHHHHhcCcchhHHHHHHHHHHHHHHh
Q psy3602 275 CLKAYVLLGQDKYLSRFDKHYSAVMKYI 302 (390)
Q Consensus 275 LlK~~ll~g~~~~~~~~~~~~~~~~~~l 302 (390)
-+..|+++|++.|++.|.++...+.+.+
T Consensus 28 ~~RgYlltgd~~~l~~y~~~~~~~~~~l 55 (138)
T PF05227_consen 28 ALRGYLLTGDPEFLEPYQEARARLEKAL 55 (138)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHcCCHhhhchHHHHHHHHHHHH
Confidence 4789999999999999988877776654
No 53
>KOG2430|consensus
Probab=33.19 E-value=2.4e+02 Score=28.85 Aligned_cols=136 Identities=15% Similarity=0.101 Sum_probs=81.6
Q ss_pred cHHHHHHHHHHHHHhhcccCCCCCCccceeecccCCCCCCCCCCCCcccccccchhhhHH-HHHHhhCChhHHHHHHHHH
Q psy3602 154 TGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMA-ALSRLSGLPIFEAKAHRAM 232 (390)
Q Consensus 154 d~~lL~kA~dLad~Ll~AF~T~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~-~LS~lTGd~~Y~~~a~~~~ 232 (390)
+++|-++|+..-|-|-.-=...|.+--..+|+.+|.-... .+..-|.+-|.- |+. .-.-+.||..|.+.-.+-+
T Consensus 203 ~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rk----dsgigagidsyy-ey~lkayillgddsfldrfn~hy 277 (587)
T KOG2430|consen 203 APIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRK----DSGIGAGIDSYY-EYLLKAYILLGDDSFLDRFNKHY 277 (587)
T ss_pred ChhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceec----ccCcCcchHHHH-HHHHHHhheeccHHHHHHHHHHH
Confidence 4678888888777765444445555556788888754321 112225555543 433 3345789999999999999
Q ss_pred HHHHhhcCCCCCCCCeeeecCCCCeeecccCCCCCCchhhHhHHHHHHhcCc-chhHHHHHHHHHHHHHH
Q psy3602 233 DGLWAARNRDSDLMGTVLNIDSGDWIRRDSGVGAGIDSYYEYCLKAYVLLGQ-DKYLSRFDKHYSAVMKY 301 (390)
Q Consensus 233 ~~l~~~~~~~~gL~~~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~ll~g~-~~~~~~~~~~~~~~~~~ 301 (390)
++|.+.-++ -|..+|+.--+++-...+| -|+..-+..-.-+|-|| +...++..-.++.|++|
T Consensus 278 dai~ryi~k----~pi~ldvhihkp~l~ar~~---mdallaf~pglqvlkgdik~aie~heml~qvikkh 340 (587)
T KOG2430|consen 278 DAIKRYINK----GPIFLDVHIHKPMLAARGF---MDALLAFFPGLQVLKGDIKEAIEMHEMLFQVIKKH 340 (587)
T ss_pred HHHHHHhcC----CCeEEEEecccchhhHhhH---HHHHHHhCcchhhhccccHHHHHHHHHHHHHHHHc
Confidence 999885433 2566666544433222221 23333333233356676 45677777788888876
No 54
>PF11329 DUF3131: Protein of unknown function (DUF3131); InterPro: IPR021478 This bacterial family of proteins has no known function.
Probab=28.60 E-value=4.4e+02 Score=27.11 Aligned_cols=136 Identities=17% Similarity=0.267 Sum_probs=75.6
Q ss_pred hcccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHH--hhcccCCCCCCccceeecccCCCCCCCCC--C-CCccc
Q psy3602 128 RVLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFR--LLPAFNTTTGIPHGRINLRHGLKSKGLEW--S-VDTCT 202 (390)
Q Consensus 128 R~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~--Ll~AF~T~sgiP~~~vnl~~g~~~~~~~~--~-~~~~l 202 (390)
=+|-+|+||.+|-=- + .+.+.++...+-.- =||-| +.++|....|-+++.+....+. . ..-+.
T Consensus 38 ~yL~al~AA~~lglI--s--------~~e~~~Rl~~~L~tL~~lpl~--~g~lPn~~Y~t~T~~~~~~~~~p~~~~gwSa 105 (367)
T PF11329_consen 38 SYLMALVAARELGLI--S--------REEFDQRLEKTLATLEKLPLF--RGHLPNKWYNTQTGQPVDYGNQPGERIGWSA 105 (367)
T ss_pred HHHHHHHHHHHcCCC--C--------HHHHHHHHHHHHHHHHhCccc--CCcCccceeecCcCcccccCCCCCccCCccH
Confidence 477788899888420 0 12222222222111 13444 4678988888888776531110 1 22345
Q ss_pred ccccchhhhHHHHHHhhCChhHHHHHHHHHHHH--HhhcCCCCCCCCeeeecCCCCeeecccCCCCCCchhhHhHHHHHH
Q psy3602 203 ACAGTMILEMAALSRLSGLPIFEAKAHRAMDGL--WAARNRDSDLMGTVLNIDSGDWIRRDSGVGAGIDSYYEYCLKAYV 280 (390)
Q Consensus 203 Ae~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l--~~~~~~~~gL~~~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~l 280 (390)
-++|-|..=+..|.+ .-|.|.+.++++.... -..-. ..-|++..+++..... .....+| |=||.-+.+.
T Consensus 106 vD~GrLl~~L~il~~--~~P~~a~~v~~l~~~W~~~~~i~-~G~l~ga~~~~~~~~~-~qegRlG-----ye~YAA~~~~ 176 (367)
T PF11329_consen 106 VDIGRLLIALRILKQ--RYPEYAEQVDALVLRWNFCRLID-DGELYGATVNKGQEQY-RQEGRLG-----YEEYAARGFQ 176 (367)
T ss_pred hhHHHHHHHHHHHHH--HCchHHHHHHHHHHhCCHHHHhc-CCeeeeeEecCCceEE-eeccccc-----HHHHHHHHHH
Confidence 678888777777664 3688888887776542 12211 2235565555542111 1223333 6789999999
Q ss_pred hcCc
Q psy3602 281 LLGQ 284 (390)
Q Consensus 281 l~g~ 284 (390)
|.|-
T Consensus 177 lwG~ 180 (367)
T PF11329_consen 177 LWGF 180 (367)
T ss_pred HcCC
Confidence 9884
No 55
>KOG3760|consensus
Probab=27.61 E-value=1.2e+02 Score=31.66 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=54.4
Q ss_pred chhhHhhhhhhhccccchh-hhhcHHHHHHHHHHHHHhhcccCCCCCCccceeecccCCCCCC-CCCCCCcccccccchh
Q psy3602 132 GLLSGHVLAEYFKLNTDLM-QWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKG-LEWSVDTCTACAGTMI 209 (390)
Q Consensus 132 GLLSAy~Ls~~~~~~~~~~-~~yd~~lL~kA~dLad~Ll~AF~T~sgiP~~~vnl~~g~~~~~-~~~~~~~~lAe~Gsl~ 209 (390)
+||+-|+|-.-. +..+ ++ -+.|...-.+--..+||.|||-||-.|.-=.+.-|.+++- .+.... |-+
T Consensus 492 SLiGLYDL~eTa---~~Kia~E-A~~Ly~~Gm~SLK~mLpLyDTGSGTiYDLRH~~LG~APNLARWDYHa-------tHv 560 (594)
T KOG3760|consen 492 SLIGLYDLDETA---RAKIAQE-AQELYSAGMRSLKQMLPLYDTGSGTIYDLRHVALGTAPNLARWDYHA-------THV 560 (594)
T ss_pred Hhhhhhccchhh---hHHHHHH-HHHHHHHHHHHHHhhheeeecCCCceeehhhhhhccCcccccchhhh-------HHH
Confidence 477888885311 1000 00 0223333333345599999999997765433444555531 122222 223
Q ss_pred hhHHHHHHhhCChhHHHHHHHHHHHHHhh
Q psy3602 210 LEMAALSRLSGLPIFEAKAHRAMDGLWAA 238 (390)
Q Consensus 210 LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~ 238 (390)
=-+.-|+-+-.||...+.|+|=...+...
T Consensus 561 nqL~llatId~dpv~~~ta~RWkgY~~G~ 589 (594)
T KOG3760|consen 561 NQLKLLATIDKDPVLSKTADRWKGYAYGK 589 (594)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhhhhcc
Confidence 34566899999999999999865555443
No 56
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=26.33 E-value=62 Score=30.76 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=24.8
Q ss_pred ccccchhhhHHHHHHhhCChhHHHHHHHHHHHHHh
Q psy3602 203 ACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWA 237 (390)
Q Consensus 203 Ae~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~ 237 (390)
...+.-..-......+|||++|.++|.++++.-..
T Consensus 56 ~~~a~a~~~lAlay~~Tgd~~YA~~a~~iL~~W~~ 90 (272)
T PF05426_consen 56 QRDADAAYALALAYYLTGDEKYADKAAEILNAWAL 90 (272)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHc
Confidence 34444455667788999999999999999887654
No 57
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=25.41 E-value=7.2e+02 Score=25.16 Aligned_cols=147 Identities=16% Similarity=0.258 Sum_probs=75.9
Q ss_pred HHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCeeeecCCCCeeecccCCCCCCch--hhHhHHHHHHh-cCcchhHHHH
Q psy3602 215 LSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRDSGVGAGIDS--YYEYCLKAYVL-LGQDKYLSRF 291 (390)
Q Consensus 215 LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~gL~~~~i~~~tg~~~~~~~~~Ga~~DS--~YEYLlK~~ll-~g~~~~~~~~ 291 (390)
|.-++|. .+.|++++..+.+.. ..|++|+.++.... ...| ..|+ +|=.++..|+. +||..+.+..
T Consensus 42 l~l~~~~---~~~a~~~L~~~~~~~--~~G~ipn~~~~~~~------~~Y~-s~Dat~wfl~~l~~Y~~~t~D~~~l~~~ 109 (370)
T PF06202_consen 42 LLLSPGR---FEEARNILATFAGTQ--RHGLIPNELRDGEE------PRYN-SVDATLWFLIALQEYYRWTGDYSFLREL 109 (370)
T ss_pred HHhCCCc---HHHHHHHHHHHHHhh--hcCcccCcccCCCC------CCCC-CCccHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3344444 466777777777654 37999998854111 1111 2344 34444555444 5887777666
Q ss_pred HHHHHHHHHHhhcCCcc-eeEe------ccCCCcccchhhhhhhhhcccceeccCCCCCCchhHH--HHHH--------H
Q psy3602 292 DKHYSAVMKYISRGPLL-IDVH------MHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLE--STYF--------L 354 (390)
Q Consensus 292 ~~~~~~~~~~l~~~~~~-~~~~------~~~~~~~~~~~~~~L~~f~pG~~~~~~~y~LRPE~iE--S~fy--------l 354 (390)
...++.+++....+..+ ..+. ..........||| +...|..+. +... -.|| .++| |
T Consensus 110 ~~~i~~il~~~~~g~~~~~~~d~~~gl~~~~~~~~~~tWmD---~~~~g~~~t-pr~g---~~vEIqal~y~AL~~~~~l 182 (370)
T PF06202_consen 110 YPAIEEILEWYADGTDFGIRVDPEDGLIYSGNGLNNQTWMD---ARNDGRPVT-PRDG---AAVEIQALWYNALRFAAEL 182 (370)
T ss_pred HHHHHHHHHHHHhCCCCccccccCCCeeecCCCCCCCCccc---cccCCcccc-CCCC---cchHHHHHHHHHHHHHHHH
Confidence 66666676655433221 1111 1111122347888 223332211 1111 2233 2222 2
Q ss_pred HHhcCC---hhhHHHHHHHHHHHHHhccc
Q psy3602 355 YKSTGD---PHYLDVGKSVLRALQTHARV 380 (390)
Q Consensus 355 ~R~TgD---~~Yre~gW~if~ai~k~~r~ 380 (390)
.+.-++ ..|+++|-++=++|++..-.
T Consensus 183 a~~~~~~~a~~~~~~A~~lk~~F~~~FW~ 211 (370)
T PF06202_consen 183 AEKFGDELAARYREWAERLKESFEKRFWD 211 (370)
T ss_pred HhhcCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 222344 48999999999999998644
No 58
>PF11186 DUF2972: Protein of unknown function (DUF2972); InterPro: IPR021353 Some members in this family of proteins with unknown function are annotated as sugar transferase proteins, however this cannot be confirmed.
Probab=23.88 E-value=52 Score=30.73 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=17.7
Q ss_pred CCchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcc
Q psy3602 343 LRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHAR 379 (390)
Q Consensus 343 LRPE~iES~fyl~R~TgD~~Yre~gW~if~ai~k~~r 379 (390)
-||+.|+| |+.+|.+||.|+
T Consensus 177 ~rPDIVaS-----------------WKYYQEFEkmCk 196 (199)
T PF11186_consen 177 HRPDIVAS-----------------WKYYQEFEKMCK 196 (199)
T ss_pred hCHHHHHH-----------------HHHHHHHHHHHH
Confidence 49999998 888899999996
No 59
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=23.15 E-value=1.7e+02 Score=31.39 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=57.0
Q ss_pred eeccceehhhcccchhhHhhhhhhhccccchhhhhcHHHHHHHHHHHHHhh-cccCCCCCCccceeecccCCCCCCCCCC
Q psy3602 119 VVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLL-PAFNTTTGIPHGRINLRHGLKSKGLEWS 197 (390)
Q Consensus 119 ~vsvFEttIR~LGGLLSAy~Ls~~~~~~~~~~~~yd~~lL~kA~dLad~Ll-~AF~T~sgiP~~~vnl~~g~~~~~~~~~ 197 (390)
.+.-+...--||=.++-||.+|. |+.|-+.|..++.+.- -...+++|.. ..+|..+..
T Consensus 379 vl~~~p~~~~yll~~vra~~~s~------------D~~Lw~~~~~m~~~~gLGdig~~~~~~-~~~~~~~~~-------- 437 (557)
T PF06917_consen 379 VLKPFPADPDYLLPYVRAYRLSR------------DPELWDLARTMAHHFGLGDIGNAAGKE-PRVNMQTDN-------- 437 (557)
T ss_dssp EE--EE--HHHHHHHHHHHHHS--------------HHHHHHHHHHHHHTT-EE-TTBTTBS--EE-TT-----------
T ss_pred eeccccCchhHhHHHHHHHHcCC------------CHHHHHHHHHHHhhcCcccccCccccc-cccccCCCC--------
Confidence 45666666777777888999986 6778888888887531 1122333321 122322211
Q ss_pred CCcccccccchhhhHHHHHHhhCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy3602 198 VDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDL 245 (390)
Q Consensus 198 ~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~gL 245 (390)
+. -=+++-...|.+.|+++.|.++|+++-+.|.+.... .||
T Consensus 438 -----~s-p~~L~allEL~~atq~~~~l~lA~~~g~~l~~~~~~-~Gl 478 (557)
T PF06917_consen 438 -----AS-PYLLFALLELYQATQDARYLELADQVGENLFEQHFH-RGL 478 (557)
T ss_dssp --------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHEE-TTE
T ss_pred -----CC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcc-Cce
Confidence 11 123566778999999999999999999999886532 354
No 60
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=22.36 E-value=1.7e+02 Score=28.38 Aligned_cols=122 Identities=20% Similarity=0.305 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHHHhhcccCC-CCCCccceeecccCCCCCCCCCCCCcccccccchhhhHHHHHHhhCChhHHHHHHHHH
Q psy3602 154 TGQLLELAKDIGFRLLPAFNT-TTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAM 232 (390)
Q Consensus 154 d~~lL~kA~dLad~Ll~AF~T-~sgiP~~~vnl~~g~~~~~~~~~~~~~lAe~Gsl~LEf~~LS~lTGd~~Y~~~a~~~~ 232 (390)
++.+++.+.++-+.+..-+.+ +.+.|...- ...... ...|...+ ..+.+-+..+.+.++|+.|.+.+.++.
T Consensus 186 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~WC~G~-----~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 257 (355)
T PF05147_consen 186 DPEYLKLIEQILNFLLKHFNTDDGGWPDNRN--NSNYKS-RPSWCYGS-----PGILLALLKAYKILDDEEYDEEAEQAL 257 (355)
T ss_dssp HHHHHHCHHHHHHHHHHC--TGCCT--SECT--HHHHHC---SSSSSH-----HHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhcCcccCCCCCCCC--cccccc-ccccccCc-----HHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 577888999999998888854 334332211 110000 11222111 123455577889999999999999999
Q ss_pred HHHHhhcCCCCCCCCeeeecCCCCeeecccCCCCCCchhhHhHHHHHHhcCcchhHHHHHHHHHHHHH
Q psy3602 233 DGLWAARNRDSDLMGTVLNIDSGDWIRRDSGVGAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMK 300 (390)
Q Consensus 233 ~~l~~~~~~~~gL~~~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~ll~g~~~~~~~~~~~~~~~~~ 300 (390)
+.+++.... ..+...+. +.-+-.+.|++.+-.++++++.+.-.+.++.+..
T Consensus 258 ~~~~~~~~~----------~~~~~lCH-------G~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
T PF05147_consen 258 ESILQKGLF----------LNNPSLCH-------GTAGILEILLDLYKYTGDEEYKELANKLIQKLLS 308 (355)
T ss_dssp HHHHHH-TC----------TTSS-STT-------SHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHCT
T ss_pred HHHHHcccc----------CCCCceeC-------chHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 988874210 11111222 2223467788888888888777665555444443
No 61
>PF10305 Fmp27_SW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019415 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region within FMP27 that contains characteristic SW and GKG sequence motifs.
Probab=21.45 E-value=1.5e+02 Score=24.66 Aligned_cols=31 Identities=3% Similarity=0.003 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q psy3602 26 EKMTLREESRDMFYHAYRAYMDNAYPADELM 56 (390)
Q Consensus 26 ~~~~r~~~Vk~~f~haw~~Y~~~A~g~Del~ 56 (390)
.|..|-++.|......|..-+++.||.|++.
T Consensus 13 SWi~ri~~~k~~~~~~~~~~~~~~~G~~~~~ 43 (103)
T PF10305_consen 13 SWIRRIRKAKRTQKRRIKENRSYLWGNDDVP 43 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 4778888999999999999999999999943
Done!