RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3602
(390 letters)
>gnl|CDD|216556 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 47. Members
of this family are alpha-mannosidases that catalyze the
hydrolysis of the terminal 1,2-linked alpha-D-mannose
residues in the oligo-mannose oligosaccharide
Man(9)(GlcNAc)(2).
Length = 445
Score = 363 bits (935), Expect = e-123
Identities = 141/421 (33%), Positives = 199/421 (47%), Gaps = 94/421 (22%)
Query: 37 MFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSLTLIDTLDTLAILG 96
F HA+ Y A+ DEL P+SC GR D+ G + TL+D+LDTL I+G
Sbjct: 1 AFLHAWDGYKKYAWGHDELRPISCRGR------------DSFGGWGATLVDSLDTLYIMG 48
Query: 97 DIEEFEHATKLISENVNFDSD-IVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWYTG 155
+EFE A + + ++FD D VSVFET IR LGGLLS + L+
Sbjct: 49 LTDEFEEAVDWVEKKLDFDKDSTDVSVFETTIRYLGGLLSAYDLS------------GDD 96
Query: 156 QLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAAL 215
LLE A D+ RLLPAF+T TGIP+ R+NL G + + A AGT+ LE L
Sbjct: 97 LLLEKAVDLADRLLPAFDTPTGIPYPRVNLGKGGVNP--VAGGASSLAEAGTLQLEFTRL 154
Query: 216 SRLSGLPIFEAKAHRAMDGLWAARNRDSD-LMGTVLNIDSGDWIRRDSGVGAGIDSYYEY 274
S+L+G P +E A R MD LW +++R L+ ++ +G + D +GAG DSYYEY
Sbjct: 155 SQLTGDPKYEDAAERVMDALWKSQSRSLPGLVPIFIDPSTGQFTGGDITLGAGGDSYYEY 214
Query: 275 CLKAYVLLGQ--DKYLSRFDKHYSAVMKYISRGPL----LIDVHMHK--------PQMTS 320
LK Y+LLG +YL +D+ A+ K++ P L+ V P+M
Sbjct: 215 LLKQYILLGGKDPQYLDMYDEAMDAIKKHLLFRPSTPSDLLFVGELSSGGGGELSPKMDH 274
Query: 321 -RNFMDALLA-----------------------------FWPGL---------------- 334
F LLA GL
Sbjct: 275 LVCFAGGLLALGAKLGLPDKGDLELAEELTDTCYKMYKSTPTGLGPEIFYFNPCPCWDED 334
Query: 335 ------QVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPCGYAAVR 388
++ + LRPE +ES ++LY+ TGDP Y + G + +A++ + R PCGYA ++
Sbjct: 335 KWDFYVKIADSHYLLRPETIESLFYLYRLTGDPKYREWGWEIFQAIEKYTRTPCGYAGIK 394
Query: 389 D 389
D
Sbjct: 395 D 395
>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein;
Provisional.
Length = 522
Score = 177 bits (450), Expect = 1e-50
Identities = 114/431 (26%), Positives = 173/431 (40%), Gaps = 107/431 (24%)
Query: 31 REESRDMFYHAYRAYMDNAYPADELMPLSCTGR-WRSQHTSRGDIDDTLGNFSLTLIDTL 89
RE R+ HA+ Y + A+ DEL PL+ W LT+ID+L
Sbjct: 73 RESVREAMKHAWEGYKEYAWGHDELRPLTKRHHEW--------------FGLGLTIIDSL 118
Query: 90 DTLAILGDIEEFEHATKLISENVNFDSDI--VVSVFETNIRVLGGLLSGHVLAEYFKLNT 147
DTL I+G +E++ ++ N+ D VSVFET IRVLGGLLS + L
Sbjct: 119 DTLKIMGLKKEYKEGRDWVANNLKQSKDTGLGVSVFETTIRVLGGLLSAY------DLTG 172
Query: 148 DLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTAC-AG 206
D M LE A++I RLLPAFN TG P INL G + W+ G
Sbjct: 173 DEM------YLEKAREIADRLLPAFNEDTGFPASEINLATG-RKSYPGWAGGCSILSEVG 225
Query: 207 TMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRDSGVGA 266
T+ LE LS ++G P + + MD L++ + + L LN D+G + +GA
Sbjct: 226 TLQLEFNYLSEITGDPKYAEYVDKVMDALFSMKPAINGLYPIFLNPDAGRFCGNHISLGA 285
Query: 267 GIDSYYEYCLKAYVLL--GQDKYLSRFDKHYSAVMKYISR---------GPLLIDVHMHK 315
DSYYEY LK ++ +++Y F + +++++ + + +K
Sbjct: 286 LGDSYYEYLLKQWLYTNGREERYRRLFVESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNK 345
Query: 316 PQMTSRNFMDALLAFWPG------------------LQVHWG------------QHP--L 343
M+ L F G + G P L
Sbjct: 346 --------MEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYETYATSPTGL 397
Query: 344 RPEFL--------------ESTYFL-----------YKSTGDPHYLDVGKSVLRALQTHA 378
PE +S Y L Y+ TGDP Y + + +A++ H
Sbjct: 398 GPEIFHFDPNSGDISPNVHDSHYILRPETVESIFILYRLTGDPKYREWAWKIFQAIEKHC 457
Query: 379 RVPCGYAAVRD 389
+ GY+ +++
Sbjct: 458 KTENGYSGLKN 468
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 32.6 bits (74), Expect = 0.41
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 9 ENYNHTSKSYTNGMSKEEKMTLREESRDMFYH 40
++Y+ K Y N MS EE+ REE F H
Sbjct: 232 DHYDEFLKKY-NQMSVEERKDFREEQISQFQH 262
>gnl|CDD|221228 pfam11796, DUF3323, Protein of unknown function N-terminus
(DUF3323). Proteins in this entry are encoded within a
conserved gene four-gene neighborhood found sporadically
in a phylogenetically broad range of bacteria including:
Nocardia farcinica, Symbiobacterium thermophilum, and
Streptomyces avermitilis (Actinobacteria), Geobacillus
kaustophilus (Firmicutes), Azoarcus sp. EbN1 and
Ralstonia solanacearum (Beta-proteobacteria).
Length = 215
Score = 31.9 bits (73), Expect = 0.41
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 11/77 (14%)
Query: 302 ISRGPLLIDVHMHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKSTGDP 361
+ G + ++ P+ S L A L + F + + TGDP
Sbjct: 104 LRGGGTVRRLYGQDPEAASALLKQVLAALA-ALPQAGKEKERLAVF--AA----RVTGDP 156
Query: 362 HYLD----VGKSVLRAL 374
H LD G+ VL AL
Sbjct: 157 HALDAGTPAGRLVLAAL 173
>gnl|CDD|114308 pfam05578, Peptidase_S31, Pestivirus NS3 polyprotein peptidase S31.
These serine peptidases are involved in processing of
the flavivirus polyprotein.
Length = 211
Score = 31.9 bits (72), Expect = 0.43
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 200 TCTACAGT-MILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDS 243
TC +GT ++ L SGLPIFEA + R + + +N +S
Sbjct: 143 TCVTASGTPAFFDLKNLKGWSGLPIFEASSGRVVGRVKVGKNEES 187
>gnl|CDD|224688 COG1774, COG1774, Uncharacterized homolog of PSP1 [Function
unknown].
Length = 265
Score = 30.4 bits (69), Expect = 1.2
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 98 IEEFEH---ATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQ 151
I +FE KL+ + D++ V +F RV L G LA+ FK +L Q
Sbjct: 89 IVKFEEHRLDMKLVDVEITLDNNKYVFLFTARGRVDFRELVG-DLAKIFKTRIELRQ 144
>gnl|CDD|236049 PRK07562, PRK07562, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1220
Score = 29.9 bits (68), Expect = 3.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 75 DDTLGNF-SLTLIDTLDTLAILGDIEEFEHATKL 107
DDT N SL L+ D D+E +EHA +L
Sbjct: 483 DDTACNLASLNLLTFRDEDTKRFDVEAYEHACRL 516
>gnl|CDD|219654 pfam07944, DUF1680, Putative glycosyl hydrolase of unknown function
(DUF1680). The members of this family are sequences
derived from hypothetical bacterial and eukaryotic
proteins of unknown function. One members of this family
is annotated as a possible arabinosidase, but no
references were found to back this. These proteins are
related to a large family of glycosyl hydrolases.
Length = 511
Score = 29.6 bits (67), Expect = 3.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 339 GQHPLRPEF---LESTYFLYKSTGDPHYLDVGK 368
Q L PE E+ LY+ TGD YLD+ K
Sbjct: 171 MQKHLYPEHGGINEALVELYELTGDKRYLDLAK 203
>gnl|CDD|234336 TIGR03734, PRTRC_parB, PRTRC system ParB family protein. A novel
genetic system characterized by six major proteins,
included a ParB homolog and a ThiF homolog, is
designated PRTRC, or ParB-Related,ThiF-Related Cassette.
It is often found on plasmids. This protein family the
member related to ParB, and is designated PRTRC system
ParB family protein.
Length = 554
Score = 29.7 bits (67), Expect = 3.4
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 119 VVSVFETNIRVLGGLLSGHV--LAEYFKLNTDLMQWYTGQLLE-LAKDIGFR 167
+ + L LL+ L ++KLN + ++ T ++ LA +IG +
Sbjct: 463 ASAAEGLEVHALKSLLNYLEVDLTRHWKLNKEFLELLTKSEIDALADEIGLK 514
>gnl|CDD|227154 COG4817, COG4817, DNA-binding ferritin-like protein (Dps family)
[General function prediction only].
Length = 111
Score = 27.8 bits (62), Expect = 4.2
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 11/94 (11%)
Query: 26 EKMTLREESRDMFYHAYRAYMDNAYPAD--ELMPLSCTGRWRSQHTSRGD---IDDTLGN 80
+K+ EE R+ RA P D W+S T + + + L
Sbjct: 4 KKIIGLEEKREWKEFENRA---KKLPKDYYTAYKEIQKYLWKSGPTGWNEMKILGNILEL 60
Query: 81 FSLTLIDTLDTLAILG-DIEEFEHATKLISENVN 113
F D + +LG D+ F L+ +
Sbjct: 61 FEEAAADGKEVTDVLGDDVATF--CDALLGDYEK 92
>gnl|CDD|185707 cd07896, Adenylation_kDNA_ligase_like, Adenylation domain of kDNA
ligases and similar proteins. The mitochondrial DNA of
parasitic protozoans is highly unusual. It is termed the
kinetoplast DNA (kDNA) and consists of circular DNA
molecules (maxicircles) and several thousand smaller
circular molecules (minicircles). This group is composed
of kDNA ligase, Chlorella virus DNA ligase, and similar
proteins. kDNA ligase and Chlorella virus DNA ligase are
the smallest known ATP-dependent ligases. They are
involved in DNA replication or repair. ATP-dependent
polynucleotide ligases catalyze phosphodiester bond
formation using nicked nucleic acid substrates with the
high energy nucleotide of ATP as a cofactor in a three
step reaction mechanism. They have a highly modular
architecture consisting of a unique arrangement of two
or more discrete domains. The adenylation and the
C-terminal oligonucleotide/oligosaccharide binding
(OB)-fold domains comprise a catalytic core unit that is
common to most members of the ATP-dependent DNA ligase
family, including this group. The adenylation domain
binds ATP and contains many of the active-site residues.
Length = 174
Score = 28.3 bits (64), Expect = 5.2
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
Query: 215 LSRLSGLPI-----FEAK-AHRAMDG-LWAARNRDSDLMGTVL--NIDSGDW 257
LSR SG PI F A +DG LW R + V D DW
Sbjct: 37 LSR-SGKPIAAPAWFTAGLPPFPLDGELWIGRGQFEQTSSIVRSKKPDDEDW 87
>gnl|CDD|216462 pfam01373, Glyco_hydro_14, Glycosyl hydrolase family 14. This
family are beta amylases.
Length = 399
Score = 28.7 bits (64), Expect = 6.0
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 136 GHVLAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLE 195
G + Y K D ++WY L IG F+ G+P G K G+
Sbjct: 227 GGYNSTYGK---DFLEWYQSVLENHLGVIGSAAHKNFDPVFGVPIGA-------KIAGIH 276
Query: 196 WSVDTCT 202
W + T
Sbjct: 277 WQYNNPT 283
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.424
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,148,277
Number of extensions: 1961385
Number of successful extensions: 1624
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1613
Number of HSP's successfully gapped: 22
Length of query: 390
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 291
Effective length of database: 6,546,556
Effective search space: 1905047796
Effective search space used: 1905047796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)