RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3602
(390 letters)
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase,
structural genomics, PSI, protein initiative; HET: NAG
BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Length = 478
Score = 324 bits (832), Expect = e-108
Identities = 108/426 (25%), Positives = 171/426 (40%), Gaps = 82/426 (19%)
Query: 23 SKEEKMTLREESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFS 82
+ R + ++M HA+ Y A+ +EL P+S G
Sbjct: 13 ADATIREKRAKIKEMMTHAWNNYKRYAWGLNELKPISKEGH---------SSSLFGNIKG 63
Query: 83 LTLIDTLDTLAILGDIEEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEY 142
T++D LDTL I+G EF+ A I + ++F+ + VSVFE NIR +GGLLS + L+
Sbjct: 64 ATIVDALDTLFIMGMKTEFQEAKSWIKKYLDFNVNAEVSVFEVNIRFVGGLLSAYYLSGE 123
Query: 143 FKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGL-KSKGLEWSVDTC 201
+ A ++G +LLPAF+T +GIP +N++ G+ ++ +
Sbjct: 124 ------------EIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIGRNWPWASGGSSI 171
Query: 202 TACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRD 261
A GT+ LE LS LSG P+F K + L + L LN SG W +
Sbjct: 172 LAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLDKPEG-LYPNYLNPSSGQWGQHH 230
Query: 262 SGVGAGIDSYYEYCLKAYVLLGQ--DKYLSRFDKHYSAVMKYISRGP--LLIDVHMHKPQ 317
VG DS+YEY LKA+++ + + + A+ ++ R L + K
Sbjct: 231 VSVGGLGDSFYEYLLKAWLMSDKTDLEAKKMYFDAVQAIETHLIRKSSGGLTYIAEWKGG 290
Query: 318 MTSRNFMDALLAFWPGLQV-------------------------HW-------------- 338
+ M L F G+ H
Sbjct: 291 -LLEHKMGHLTCFAGGMFALGADGAPEARAQHYLELGAEIARTCHESYNRTYVKLGPEAF 349
Query: 339 ---------------GQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPCG 383
+ LRPE +E+ ++++ T DP Y + AL++H RV G
Sbjct: 350 RFDGGVEAIATRQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVEALESHCRVNGG 409
Query: 384 YAAVRD 389
Y+ +RD
Sbjct: 410 YSGLRD 415
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative
conformations, modulation of activity, glycoprot
glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A
{Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A*
1kkt_A* 1kre_A* 1krf_A*
Length = 475
Score = 316 bits (812), Expect = e-105
Identities = 93/428 (21%), Positives = 159/428 (37%), Gaps = 85/428 (19%)
Query: 31 REESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSLTLIDTLD 90
+ ++ F HA+ YM A+P DEL P+S D+ + + +D L
Sbjct: 6 ADAVKEAFQHAWNGYMKYAFPHDELTPVSNGHA------------DSRNGWGASAVDALS 53
Query: 91 TLAILGDIEEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLM 150
T I+G + + +++ + VS+FET IR L G+LSG+ L + N
Sbjct: 54 TAVIMGKADVVNAILEHVADIDFSKTSDTVSLFETTIRYLAGMLSGYDLLQGPAKNLVDN 113
Query: 151 QWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMIL 210
Q LL+ ++++ L AF+T +G+P+ IN+ + + A GT++L
Sbjct: 114 QDLIDGLLDQSRNLADVLKFAFDTPSGVPYNNINITSHGN----DGATTNGLAVTGTLVL 169
Query: 211 EMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSD----LMGTVLNIDSGDWIRRDSGVGA 266
E LS L+G + + +A L + S+ L+G+ +NI+ G +
Sbjct: 170 EWTRLSDLTGDEEYAKLSQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNG 229
Query: 267 GIDSYYEYCLKAYVLLGQ--DKYLSRFDKHYSAVMKYISRGPLLIDVHMHKPQMTSRNF- 323
G DS+YEY +K YV + + Y R+ + +K++ P ++RN+
Sbjct: 230 GDDSFYEYLIKMYVYDPKRFETYKDRWVLAAESTIKHLKSHPKSRPDLTFLSSYSNRNYD 289
Query: 324 --MDALLAFWPGLQVHWGQHPLRPEFLE-------STYFLYKST---------------- 358
L F G + G R +F++ Y ST
Sbjct: 290 LSSQHLTCFDGGSFLLGGTVLDRQDFIDFGLELVDGCEATYNSTLTKIGPDSWGWDPKKV 349
Query: 359 ---------------GDPH----------------------YLDVGKSVLRALQTHARVP 381
Y D + A+ + R
Sbjct: 350 PSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFVAINSTCRTD 409
Query: 382 CGYAAVRD 389
G+AAV D
Sbjct: 410 SGFAAVSD 417
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1,
2-alpha-mannosidase; substrate analogue, glycosyl
hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP:
a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Length = 538
Score = 318 bits (815), Expect = e-104
Identities = 110/430 (25%), Positives = 179/430 (41%), Gaps = 91/430 (21%)
Query: 23 SKEEKMTLREESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFS 82
+ ++ D+F HA++ Y A+ DEL P+S +
Sbjct: 81 TPVHLNYRQKGVIDVFLHAWKGYRKFAWGHDELKPVSRSFS-------------EWFGLG 127
Query: 83 LTLIDTLDTLAILGDIEEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEY 142
LTLID LDT+ ILG +EFE A K +S+ ++F+ D+ V++FE+ IR+LGGLLS + L+
Sbjct: 128 LTLIDALDTMWILGLRKEFEEARKWVSKKLHFEKDVDVNLFESTIRILGGLLSAYHLS-- 185
Query: 143 FKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCT 202
L A+D G RL+PAF T + IP+ +N+ G + W+ D+
Sbjct: 186 ----------GDSLFLRKAEDFGNRLMPAFRTPSKIPYSDVNIGTG-VAHPPRWTSDSTV 234
Query: 203 ACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRD- 261
A ++ LE LSRL+G F+ + + + L+ +N SG +
Sbjct: 235 AEVTSIQLEFRELSRLTGDKKFQEAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGV 294
Query: 262 SGVGAGIDSYYEYCLKAYVLLGQ--DKYLSRFDKHYSAVMKYISRGP----LLIDVHMHK 315
+GA DSYYEY LK ++ G+ + L + + V ++ R L +
Sbjct: 295 FTLGARADSYYEYLLKQWIQGGKQETQLLEDYVEAIEGVRTHLLRHSEPSKLTFVGELAH 354
Query: 316 PQMTSRNFMDALLAF------------------WPGLQVHWG------------------ 339
+ + MD L+ F ++
Sbjct: 355 GRFS--AKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVH 412
Query: 340 -------------------QHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARV 380
+ LRPE +ES ++LY+ TGD Y D G +L++ RV
Sbjct: 413 FNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRV 472
Query: 381 P-CGYAAVRD 389
P GY+++ +
Sbjct: 473 PSGGYSSINN 482
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG;
2.37A {Trichoderma reesei} SCOP: a.102.2.1
Length = 503
Score = 301 bits (771), Expect = 2e-98
Identities = 75/331 (22%), Positives = 131/331 (39%), Gaps = 28/331 (8%)
Query: 31 REESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSLTLIDTLD 90
+ F ++ AY A+P D+L P+S + D + + ID LD
Sbjct: 16 AAAVKAAFQTSWNAYHHFAFPHDDLHPVSNSFD------------DERNGWGSSAIDGLD 63
Query: 91 TLAILGDIEEFEHATKLISE---NVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYFKLNT 147
T ++GD + + + + ++ SVFETNIR LGGLLS + L +
Sbjct: 64 TAILMGDADIVNTILQYVPQINFTTTAVANQGSSVFETNIRYLGGLLSAYDLLRGPFSSL 123
Query: 148 DLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGT 207
Q LL A+ + L AF T +G+P + ++ + A G+
Sbjct: 124 ATNQTLVNSLLRQAQTLANGLKVAFTTPSGVPDPTVFFNPTVRR---SGASSNNVAEIGS 180
Query: 208 MILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSD---LMGTVLNIDSGDWIRRDSGV 264
++LE LS L+G P + A + L + L+GT ++ +G +
Sbjct: 181 LVLEWTRLSDLTGNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGTFQDSSGSW 240
Query: 265 GAGIDSYYEYCLKAYVLLGQ--DKYLSRFDKHYSAVMKYISRGPL----LIDVHMHKPQM 318
+DS+YEY +K Y+ Y R+ + + ++ P L + + Q
Sbjct: 241 SGLMDSFYEYLIKMYLYDPVAFAHYKDRWVLGADSTIGHLGSHPSTRKDLTFLSSYNGQS 300
Query: 319 TSRNFMDALLAFWPGLQVHWGQHPLRPEFLE 349
TS L +F G + G ++++
Sbjct: 301 TS-PNSGHLASFGGGNFILGGILLNEQKYID 330
Score = 79.6 bits (196), Expect = 2e-16
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 332 PGLQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPCGYAAVRD 389
G V + LRPE LES Y+ Y+ TGD + D+ L A++ R Y+++ D
Sbjct: 379 AGFWVTAPYYILRPETLESLYYAYRVTGDSKWQDLAWEALSAIEDACRAGSAYSSIND 436
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase;
HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae}
SCOP: a.102.2.1 PDB: 1g6i_A*
Length = 511
Score = 293 bits (750), Expect = 3e-95
Identities = 88/373 (23%), Positives = 143/373 (38%), Gaps = 39/373 (10%)
Query: 30 LREESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSLTLIDTL 89
+R+ MF ++R Y + + D P+ T ++ ++D++
Sbjct: 5 MRDRIESMFLESWRDYSKHGWGYDVYGPIEHTSH---------NMPRGNQPLGWIIVDSV 55
Query: 90 DTLAILGDI---------EEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLA 140
DTL ++ + E + + I++ ++FD D V+VFET IR+LGGLLS + L+
Sbjct: 56 DTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLDFDIDAEVNVFETTIRMLGGLLSAYHLS 115
Query: 141 EYFKLNTDLMQWYTGQLLELAKDIGFRLLPAF-NTTTGIPHGRINLRHGLKSKGLEWSVD 199
+ L L A D+G RL AF +T TGIP+ INL G K
Sbjct: 116 D------VLEVGNKTVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQAVKNHADGGA 169
Query: 200 TCTACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARN---RDSDLMGTVLNIDSGD 256
+ TA T+ +E L+ L+G + R + L+ + L+ D+G
Sbjct: 170 SSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTFPDTGK 229
Query: 257 WIRRDSGVGAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYISRGP-----LLIDV 311
+ G+ DS+YEY LK Y+L + Y + K + K++ I
Sbjct: 230 FGASTIRFGSRGDSFYEYLLKQYLLTHETLYYDLYRKSMEGMKKHLLAQSKPSSLWYIGE 289
Query: 312 HMHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVL 371
MD L+ F GL L F D+ K +
Sbjct: 290 REQGLHGQLSPKMDHLVCFMGGLLASGSTEGLSIHEARRRPFFS-----KSDWDLAKGIT 344
Query: 372 RAL-QTHARVPCG 383
Q + + G
Sbjct: 345 DTCYQMYKQSSSG 357
Score = 66.6 bits (162), Expect = 4e-12
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 334 LQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPCG------YAAV 387
++ + RPE +ES F+Y + D Y + G + + + V C + ++
Sbjct: 385 VKPLDRHNLQRPETVESIMFMYHLSHDHKYREWGAEIATSFFENTCVDCNDPKLRRFTSL 444
Query: 388 RD 389
D
Sbjct: 445 SD 446
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 1e-06
Identities = 57/383 (14%), Positives = 113/383 (29%), Gaps = 94/383 (24%)
Query: 32 EESRDMFYHAYRAYMDNAYPADELM-PLSCTGRWRSQHTSRGDIDDTLGNFSLTLIDTLD 90
+ ++ F + DE P G++ + S +G F L L
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF-LGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 91 TLAILGDIEEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYFK----LN 146
EFE+ L +++ + + + N L + + ++ Y
Sbjct: 90 ---------EFEN-CYLEGNDIH---ALAAKLLQENDTTL--VKTKELIKNYITARIMAK 134
Query: 147 TDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRIN-----LRHGLKSKGLEWSVDTC 201
+ L + +L+ F G G + LR L T
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFG---G--QGNTDDYFEELRD------L---YQTY 180
Query: 202 TACAGTMILEMAA-LSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRR 260
G +I A LS L + K GL +++ +W+
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFT--QGL--------NIL---------EWLEN 221
Query: 261 DSGVGAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYISRGPLLIDVHM-----HK 315
S Y + L+G + + HY K + P + ++ H
Sbjct: 222 PSNTPD--KDYLLSIPISCPLIG----VIQL-AHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 316 PQM----------TSRNFMDAL-----LAFWPGLQVH--WGQHPLRPEFLESTYFLYKST 358
+ + +F ++ + F+ G++ + + L P LE + L +
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS--LENNE 332
Query: 359 GDPHY-LDV-GKSVLRALQTHAR 379
G P L + + +Q +
Sbjct: 333 GVPSPMLSISNLT-QEQVQDYVN 354
Score = 41.6 bits (97), Expect = 4e-04
Identities = 49/276 (17%), Positives = 79/276 (28%), Gaps = 104/276 (37%)
Query: 37 MFYHAYRAYMDNAYPADELMP-----------------LSCTGRWRSQHTSRGDIDDTLG 79
+F+ R Y AYP L P LS + + Q ++ T
Sbjct: 303 LFFIGVRCY--EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY--VNKT-- 356
Query: 80 NFSLTLIDTLDTLAILGDIEEFEHATKLISENVNFDSDIVVS-------VFETNIR---V 129
N L + IS VN ++VVS +R
Sbjct: 357 NSHL---------------PAGKQVE--IS-LVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 130 LGGLLSGHVLAEYFKL-------------NTDLMQWYTGQLLE--LAKDIGFR---L-LP 170
GL + KL ++ L+ + + + + ++ F + +P
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 171 AFNTTTGIPHGRINLRHG-----------LKSKGLEWSVDTCTACAGTMILEM--AALSR 217
++T G +LR + ++W +T T T IL+ S
Sbjct: 459 VYDTFDG-----SDLRVLSGSISERIVDCIIRLPVKW--ETTTQFKATHILDFGPGGASG 511
Query: 218 LSGLPIFEAKAHRAMDGLWAA--------RNRDSDL 245
L L HR DG N D D
Sbjct: 512 LGVL------THRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 39.3 bits (91), Expect = 0.002
Identities = 29/200 (14%), Positives = 62/200 (31%), Gaps = 58/200 (29%)
Query: 101 FEHATKLISENVNFD-SDIVVSVFETNIRVLGGLLSGHVLAE-YFKLNTDLMQWYTGQLL 158
+ A + F DIV++ N+ + G G + E Y + + + +
Sbjct: 1646 WNRADNHFKDTYGFSILDIVIN-NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Query: 159 ELAKDIGFRLLP-AFNTTTGIPHGRINL----------------RHGLKSKGL------- 194
++ K+I F + G ++ LKSKGL
Sbjct: 1705 KIFKEINEHSTSYTFRS----EKGLLSATQFTQPALTLMEKAAFED-LKSKGLIPADATF 1759
Query: 195 ------EWS--VDTCTACAGTMILEMAA-LSRLSGLPIFEA-------KAHRAMDGLWAA 238
E++ + A M +E + G+ + A +++ M A
Sbjct: 1760 AGHSLGEYAALA----SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM----IA 1811
Query: 239 RNRDSDLMGTVLNIDSGDWI 258
N + + ++ ++
Sbjct: 1812 INPGR--VAASFSQEALQYV 1829
Score = 38.1 bits (88), Expect = 0.006
Identities = 35/241 (14%), Positives = 77/241 (31%), Gaps = 86/241 (35%)
Query: 9 ENYN-HTSKSYTNGMSKEEKM--TLREESRDMFYHAYRAYMD---NAYPADELMPLSCTG 62
ENY+ ++ +G K EK+ + E S + + + + PA LM +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 63 RWRSQHTSRGDIDDT-------LGNFS--------LTLIDTLDTLAILGDIEEFEHATKL 107
+S +G I LG ++ +++ ++ + G
Sbjct: 1746 DLKS----KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG---------MT 1792
Query: 108 ISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLMQWY-------TGQLLEL 160
+ V D + +N ++ + G V A + + +Q+ TG L+E+
Sbjct: 1793 MQVAVPRDE-----LGRSNYGMIA-INPGRVAA---SFSQEALQYVVERVGKRTGWLVEI 1843
Query: 161 AKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAALSRLSG 220
+N + + + AG ++ AL ++
Sbjct: 1844 V---------NYN----VENQQY-------------------VAAG----DLRALDTVTN 1867
Query: 221 L 221
+
Sbjct: 1868 V 1868
Score = 35.8 bits (82), Expect = 0.029
Identities = 35/254 (13%), Positives = 76/254 (29%), Gaps = 58/254 (22%)
Query: 2 F-SCFVHGENYNHTSKSYTNGMSKEEKMTLREESRDMFYHAYRAYMDNAYPADELMPLSC 60
F +C++ G + H + + +E TL +++++ + Y A +
Sbjct: 91 FENCYLEGNDI-H---ALAAKLLQENDTTL-VKTKELI----KNY----ITARIMAKRPF 137
Query: 61 TGRWRS---QHTSRGDIDDTL-------GNFSLTLIDTLDTLAILGDIEEFEHATKLISE 110
+ S + G+ L GN D + L L
Sbjct: 138 DKKSNSALFRAVGEGNA--QLVAIFGGQGNTD----DYFEELRDLYQTYH---------- 181
Query: 111 NVNFDSDIVVSVFETNIRVLGGLLSGHVLAE-YFKLNTDLMQWYTGQLLELAKDIGFRL- 168
+V + + + L L+ + AE F ++++W D + L
Sbjct: 182 ------VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP--SNTPDKDYLLS 233
Query: 169 ----LPAFNTTTGIPHGRINLR-HGLKSKGLEWSVDTCTACAGTMILEMAALSRLSGLPI 223
P + H + + G L + T + ++ A++
Sbjct: 234 IPISCP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG-LVTAVAIAETDSWES 291
Query: 224 FEAKAHRAMDGL-W 236
F +A+ L +
Sbjct: 292 FFVSVRKAITVLFF 305
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.062
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 10/37 (27%)
Query: 26 EKMTLRE-ESRDMFYHAYRAYMDNAYPADELMPLSCT 61
EK L++ ++ + Y D++ PA + + T
Sbjct: 18 EKQALKKLQAS------LKLYADDSAPA---LAIKAT 45
>3na2_A Uncharacterized protein; beta-fold, metagenome, structural
genomics, PSI-2, protein S initiative, midwest center
for structural genomics; 2.29A {Leptospirillum rubarum}
Length = 172
Score = 32.4 bits (73), Expect = 0.12
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 206 GTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDW 257
G MILEM +G+ +F ++ + L+ R ++ GT L I+ DW
Sbjct: 32 GQMILEMFR----TGMCLFSVRSPGGVAELYGGEARKVEITGTSLTIEREDW 79
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.22
Identities = 36/252 (14%), Positives = 77/252 (30%), Gaps = 52/252 (20%)
Query: 150 MQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMI 209
M + TG+ KDI AF + + L + ++ + + A +GT+
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 210 LEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRDSGVGAGID 269
L +K + + VL I+ ++ +
Sbjct: 67 L----------FWTLLSKQEEMVQ----------KFVEEVLRINY-KFL---------MS 96
Query: 270 SYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYISRGPLLIDVHMHKPQMTSRNFMDALLA 329
+ + Y+ + D+ Y+ + +V +P + R ALL
Sbjct: 97 PIKTEQRQPS--MMTRMYIEQRDRLYNDNQVFAKY-----NVSRLQPYLKLRQ---ALLE 146
Query: 330 FWP--GLQVH----WGQHPLRPEFLESTYFLYKSTGDPHYLDVGK-----SVLRALQT-H 377
P + + G+ + + S K +L++ +VL LQ
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 378 ARVPCGYAAVRD 389
++ + + D
Sbjct: 207 YQIDPNWTSRSD 218
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.5 bits (74), Expect = 0.26
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 14/83 (16%)
Query: 205 AGTMILEMAALSRLSGLPIFEA---------KAHRAM-----DGLWAARNRDSDLMGTVL 250
AG I+ A L+ G+PI+ K R++ L AR S +
Sbjct: 1183 AGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASP 1242
Query: 251 NIDSGDWIRRDSGVGAGIDSYYE 273
N++ R+ A I + E
Sbjct: 1243 NLNMKYRKRQLVTREAQIKDWVE 1265
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.70A {Pyrococcus horikoshii}
Length = 241
Score = 31.6 bits (72), Expect = 0.30
Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Query: 73 DIDDTL----GNFSLTLIDTLDTLAILGDIEEFEHATKLISENVNFDSDIVVSVFETNIR 128
D+DDTL + + ++ + G +FE A + E + F+ +R
Sbjct: 8 DLDDTLVDTSKLAEIARKNAIENMIRHGLPVDFETAYSELIELIKEYGSNFPYHFDYLLR 67
Query: 129 VLGGLLSGHVLAE----YFKLNTDLMQWYTG--QLLELAKDIGFRL 168
L + ++ Y ++ G ++L K++G+ L
Sbjct: 68 RLDLPYNPKWISAGVIAYHNTKFAYLREVPGARKVLIRLKELGYEL 113
>1vch_A Phosphoribosyltransferase-related protein; structural genomics,
riken structural genomics/proteomics initiative, RSGI;
1.94A {Thermus thermophilus} SCOP: c.61.1.1
Length = 175
Score = 29.7 bits (67), Expect = 1.2
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 89 LDTLAILGDIEEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYFKL 145
+ + LGD E A + + V +++I+ + ET + HVLAE L
Sbjct: 26 IPLVEFLGDPEFTRAAAEALRPLVPKEAEILFTT-ET-----SPIPLTHVLAEALGL 76
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45,
translation termination, peptide release, GTP-
nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Length = 441
Score = 28.8 bits (63), Expect = 3.8
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 6/134 (4%)
Query: 5 FVHGENYNHTSKSYTNGMSKEEKMTLREESRDMFY-----HAYRAYMDNAYPADELMPLS 59
+ + K G S LR+E R + A + ++ + P + L+
Sbjct: 173 VLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFITDDKPNVAGIVLA 232
Query: 60 CTGRWRSQHTSRGDIDDTLGNFSLTLIDTLDTLAILGDIEEFEHATKLISENVNFDSDIV 119
+ ++++ D L + + +D G + E A +S +
Sbjct: 233 GSADFKTELGQSDLFDQRLQSRIIKTVDVSYG-GDAGFNQAIELAADTLSNVKYVQEKKL 291
Query: 120 VSVFETNIRVLGGL 133
+ F I + G
Sbjct: 292 IQRFFDEISLDSGK 305
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A
{Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*
Length = 364
Score = 28.1 bits (62), Expect = 5.3
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 307 LLIDVHMHKPQMTSRNFMDALLAFWPGLQVHWGQHP 342
+++D H+H P + F+ + H+ HP
Sbjct: 106 VIVDWHVHAPGDPRADVYSGAYDFFEEIADHYKDHP 141
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 27.6 bits (60), Expect = 7.8
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 14/107 (13%)
Query: 79 GNFSLTLIDTLDTLAILGDIEEFEHATKLISENVNFDSDIVVSVFETNIRVLGG---LLS 135
GN +T + L+ L I+E ++ V + V + N++++ G +
Sbjct: 39 GNLEITYVQRNYDLSFLKTIQE-------VAGYVLIALNTVERIPLENLQIIRGNMYYEN 91
Query: 136 GHVLAEYFKLNTDLMQWYTGQLLELAK----DIGFRLLPAFNTTTGI 178
+ LA + + + L + + F PA I
Sbjct: 92 SYALAVLSNYDANKTGLKELPMRNLQEILHGAVRFSNNPALCNVESI 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.424
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,193,779
Number of extensions: 376651
Number of successful extensions: 966
Number of sequences better than 10.0: 1
Number of HSP's gapped: 934
Number of HSP's successfully gapped: 40
Length of query: 390
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 295
Effective length of database: 4,049,298
Effective search space: 1194542910
Effective search space used: 1194542910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)