RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3602
(390 letters)
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 453
Score = 289 bits (742), Expect = 4e-95
Identities = 112/420 (26%), Positives = 176/420 (41%), Gaps = 87/420 (20%)
Query: 31 REESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSLTLIDTLD 90
++ D+F HA++ Y A+ DEL P+S + + G LTLID LD
Sbjct: 6 QKGVIDVFLHAWKGYRKFAWGHDELKPVSRSF------------SEWFG-LGLTLIDALD 52
Query: 91 TLAILGDIEEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLM 150
T+ ILG +EFE A K +S+ ++F+ D+ V++FE+ IR+LGGLLS + L
Sbjct: 53 TMWILGLRKEFEEARKWVSKKLHFEKDVDVNLFESTIRILGGLLSAYHL----------- 101
Query: 151 QWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMIL 210
L A+D G RL+PAF T + IP+ +N+ G + W+ D+ A ++ L
Sbjct: 102 -SGDSLFLRKAEDFGNRLMPAFRTPSKIPYSDVNIGTG-VAHPPRWTSDSTVAEVTSIQL 159
Query: 211 EMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRDS-GVGAGID 269
E LSRL+G F+ + + + L+ +N SG + +GA D
Sbjct: 160 EFRELSRLTGDKKFQEAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARAD 219
Query: 270 SYYEYCLKAYVLLGQ--DKYLSRFDKHYSAVMKYISRG--PLLIDVHMHKPQMTSRNFMD 325
SYYEY LK ++ G+ + L + + V ++ R P + MD
Sbjct: 220 SYYEYLLKQWIQGGKQETQLLEDYVEAIEGVRTHLLRHSEPSKLTFVGELAHGRFSAKMD 279
Query: 326 ALLAFWPGLQV--------------------------HWGQHPLRPE------------- 346
L+ F PG + L PE
Sbjct: 280 HLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHFNLYPQPGRR 339
Query: 347 ----------------FLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPC-GYAAVRD 389
+ES ++LY+ TGD Y D G +L++ RVP GY+++ +
Sbjct: 340 DVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYSSINN 399
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 467
Score = 286 bits (732), Expect = 2e-93
Identities = 105/425 (24%), Positives = 171/425 (40%), Gaps = 80/425 (18%)
Query: 23 SKEEKMTLREESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFS 82
+ R + ++M HA+ Y A+ +EL P+S G
Sbjct: 13 ADATIREKRAKIKEMMTHAWNNYKRYAWGLNELKPISKEGH---------SSSLFGNIKG 63
Query: 83 LTLIDTLDTLAILGDIEEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEY 142
T++D LDTL I+G EF+ A I + ++F+ + VSVFE NIR +GGLLS + L+
Sbjct: 64 ATIVDALDTLFIMGMKTEFQEAKSWIKKYLDFNVNAEVSVFEVNIRFVGGLLSAYYLSGE 123
Query: 143 FKLNTDLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGL-KSKGLEWSVDTC 201
+ A ++G +LLPAF+T +GIP +N++ G+ ++ +
Sbjct: 124 ------------EIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIGRNWPWASGGSSI 171
Query: 202 TACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRD 261
A GT+ LE LS LSG P+F K + L ++ L LN SG W +
Sbjct: 172 LAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNK-LDKPEGLYPNYLNPSSGQWGQHH 230
Query: 262 SGVGAGIDSYYEYCLKAYVLLGQ--DKYLSRFDKHYSAVMKYISRGPLLIDVH-MHKPQM 318
VG DS+YEY LKA+++ + + + A+ ++ R +
Sbjct: 231 VSVGGLGDSFYEYLLKAWLMSDKTDLEAKKMYFDAVQAIETHLIRKSSGGLTYIAEWKGG 290
Query: 319 TSRNFMDALLAF--------------------------------------WPGL------ 334
+ M L F + L
Sbjct: 291 LLEHKMGHLTCFAGGMFALGADGAPEARAQHYLELGAEIARTCHESYNRTYVKLGPEAFR 350
Query: 335 ----------QVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPCGY 384
+ + + LRPE +E+ ++++ T DP Y + AL++H RV GY
Sbjct: 351 FDGGVEAIATRQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVEALESHCRVNGGY 410
Query: 385 AAVRD 389
+ +RD
Sbjct: 411 SGLRD 415
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase,
catalytic domain {Fungus (Penicillium citrinum) [TaxId:
5077]}
Length = 475
Score = 275 bits (703), Expect = 4e-89
Identities = 94/428 (21%), Positives = 161/428 (37%), Gaps = 85/428 (19%)
Query: 31 REESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSLTLIDTLD 90
+ ++ F HA+ YM A+P DEL P+S D+ + + +D L
Sbjct: 6 ADAVKEAFQHAWNGYMKYAFPHDELTPVSNGHA------------DSRNGWGASAVDALS 53
Query: 91 TLAILGDIEEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYFKLNTDLM 150
T I+G + + +++ + VS+FET IR L G+LSG+ L + N
Sbjct: 54 TAVIMGKADVVNAILEHVADIDFSKTSDTVSLFETTIRYLAGMLSGYDLLQGPAKNLVDN 113
Query: 151 QWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMIL 210
Q LL+ ++++ L AF+T +G+P+ IN+ G + + A GT++L
Sbjct: 114 QDLIDGLLDQSRNLADVLKFAFDTPSGVPYNNINITSH----GNDGATTNGLAVTGTLVL 169
Query: 211 EMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSD----LMGTVLNIDSGDWIRRDSGVGA 266
E LS L+G + + +A L + S+ L+G+ +NI+ G +
Sbjct: 170 EWTRLSDLTGDEEYAKLSQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNG 229
Query: 267 GIDSYYEYCLKAYVLLGQ--DKYLSRFDKHYSAVMKYISRGPLLIDVHMHKPQMTSRNF- 323
G DS+YEY +K YV + + Y R+ + +K++ P ++RN+
Sbjct: 230 GDDSFYEYLIKMYVYDPKRFETYKDRWVLAAESTIKHLKSHPKSRPDLTFLSSYSNRNYD 289
Query: 324 --MDALLAFWPGLQVHWGQHPLRPEFL-------ESTYFLYKST---------------- 358
L F G + G R +F+ + Y ST
Sbjct: 290 LSSQHLTCFDGGSFLLGGTVLDRQDFIDFGLELVDGCEATYNSTLTKIGPDSWGWDPKKV 349
Query: 359 ---------------GDPHYL----------------------DVGKSVLRALQTHARVP 381
Y+ D + A+ + R
Sbjct: 350 PSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFVAINSTCRTD 409
Query: 382 CGYAAVRD 389
G+AAV D
Sbjct: 410 SGFAAVSD 417
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Trichoderma reesei [TaxId: 51453]}
Length = 488
Score = 271 bits (693), Expect = 2e-87
Identities = 87/437 (19%), Positives = 151/437 (34%), Gaps = 94/437 (21%)
Query: 31 REESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSLTLIDTLD 90
+ F ++ AY A+P D+L P+S + D + + ID LD
Sbjct: 10 AAAVKAAFQTSWNAYHHFAFPHDDLHPVSNSFD------------DERNGWGSSAIDGLD 57
Query: 91 TLAILGDIEEFEHATKLISE---NVNFDSDIVVSVFETNIRVLGGLLSGHVLAEYFKLNT 147
T ++GD + + + + ++ SVFETNIR LGGLLS + L +
Sbjct: 58 TAILMGDADIVNTILQYVPQINFTTTAVANQGSSVFETNIRYLGGLLSAYDLLRGPFSSL 117
Query: 148 DLMQWYTGQLLELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGT 207
Q LL A+ + L AF T +G+P + ++ + A G+
Sbjct: 118 ATNQTLVNSLLRQAQTLANGLKVAFTTPSGVPDPTVFFNPTVRR---SGASSNNVAEIGS 174
Query: 208 MILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDS---DLMGTVLNIDSGDWIRRDSGV 264
++LE LS L+G P + A + L + L+GT ++ +G +
Sbjct: 175 LVLEWTRLSDLTGNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGTFQDSSGSW 234
Query: 265 GAGIDSYYEYCLKAYVLLGQ--DKYLSRFDKHYSAVMKYISRGPL----LIDVHMHKPQM 318
+DS+YEY +K Y+ Y R+ + + ++ P L + + Q
Sbjct: 235 SGLMDSFYEYLIKMYLYDPVAFAHYKDRWVLGADSTIGHLGSHPSTRKDLTFLSSYNGQS 294
Query: 319 TSRNFMDALLAFWPGLQVHWGQHPLRPEFLE-------STYFLYKST------------- 358
TS N L +F G + G ++++ S + Y T
Sbjct: 295 TSPN-SGHLASFGGGNFILGGILLNEQKYIDFGIKLASSYFGTYTQTASGIGPEGFAWVD 353
Query: 359 ------------------------GDPHY----------------------LDVGKSVLR 372
P+Y D+ L
Sbjct: 354 SVTGAGGSPPSSQSGFYSSAGFWVTAPYYILRPETLESLYYAYRVTGDSKWQDLAWEALS 413
Query: 373 ALQTHARVPCGYAAVRD 389
A++ R Y+++ D
Sbjct: 414 AIEDACRAGSAYSSIND 430
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 511
Score = 271 bits (693), Expect = 4e-87
Identities = 94/377 (24%), Positives = 149/377 (39%), Gaps = 43/377 (11%)
Query: 30 LREESRDMFYHAYRAYMDNAYPADELMPLSCTGRWRSQHTSRGDIDDTLGNFSL--TLID 87
+R+ MF ++R Y + + D P+ T + GN L ++D
Sbjct: 5 MRDRIESMFLESWRDYSKHGWGYDVYGPIEHTSH-----------NMPRGNQPLGWIIVD 53
Query: 88 TLDTLAILGDI---------EEFEHATKLISENVNFDSDIVVSVFETNIRVLGGLLSGHV 138
++DTL ++ + E + + I++ ++FD D V+VFET IR+LGGLLS +
Sbjct: 54 SVDTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLDFDIDAEVNVFETTIRMLGGLLSAYH 113
Query: 139 LAEYFKLNTDLMQWYTGQLLELAKDIGFRLLPAF-NTTTGIPHGRINLRHGLKSKGLEWS 197
L++ ++ L A D+G RL AF +T TGIP+ INL G K
Sbjct: 114 LSDVLEVGNK------TVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQAVKNHADG 167
Query: 198 VDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAAR---NRDSDLMGTVLNIDS 254
+ TA T+ +E L+ L+G + R + L+ N L+ D+
Sbjct: 168 GASSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTFPDT 227
Query: 255 GDWIRRDSGVGAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYISRGP-----LLI 309
G + G+ DS+YEY LK Y+L + Y + K + K++ I
Sbjct: 228 GKFGASTIRFGSRGDSFYEYLLKQYLLTHETLYYDLYRKSMEGMKKHLLAQSKPSSLWYI 287
Query: 310 DVHMHKPQMTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKS 369
MD L+ F GL L F KS D+ K
Sbjct: 288 GEREQGLHGQLSPKMDHLVCFMGGLLASGSTEGLSIHEARRRPFFSKS-----DWDLAKG 342
Query: 370 VLRAL-QTHARVPCGYA 385
+ Q + + G A
Sbjct: 343 ITDTCYQMYKQSSSGLA 359
Score = 66.3 bits (161), Expect = 2e-12
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 335 QVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTHARVPCGYAAVRD 389
+ + RPE +ES F+Y + D Y + G + + + V C +R
Sbjct: 386 KPLDRHNLQRPETVESIMFMYHLSHDHKYREWGAEIATSFFENTCVDCNDPKLRR 440
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase
{Bacillus sp. GL1 [TaxId: 84635]}
Length = 377
Score = 30.0 bits (67), Expect = 0.53
Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 15/150 (10%)
Query: 158 LELAKDIGFRLLPAFNTTTGIPHGRINLRHGLKSKGLEWSVDTCTACAGTMILEMAA-LS 216
+LA D L+ + GI + G G +D + L +
Sbjct: 110 RKLALDAADVLMRRWRADAGI--IQAWGPKGDPENGGRIIIDC------LLNLPLLLWAG 161
Query: 217 RLSGLPIFEAKAHRAMDGLWAARN---RDSDLMGTV-LNIDSGDWIRRDSGVGAGIDSYY 272
+G P + A + R D T + ++G+ IR + G S +
Sbjct: 162 EQTGDPEYRRVAEAHAL--KSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTW 219
Query: 273 EYCLKAYVLLGQDKYLSRFDKHYSAVMKYI 302
+ + K +
Sbjct: 220 TRGQAWGIYGFALNSRYLGNADLLETAKRM 249
Score = 26.6 bits (58), Expect = 5.3
Identities = 25/180 (13%), Positives = 43/180 (23%), Gaps = 26/180 (14%)
Query: 208 MILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSGDWIRRDSGVGAG 267
L A + A A D L D+ ++ G ++G
Sbjct: 93 YSLSAKAQWIVEKDESARKLALDAADVLMRRWRADAGIIQA-----WGPKGDPENGGRII 147
Query: 268 IDSYY--EYCLKAYVLLGQDKYLSRFDKHYSAVMKYISR--GPLLIDVHMHKP------Q 317
ID L A G +Y + H +++ R +
Sbjct: 148 IDCLLNLPLLLWAGEQTGDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRG 207
Query: 318 MTSRNFMDALLAFWPGLQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTH 377
T + D + W Q + G+ L+ K + R
Sbjct: 208 GTHQGNTDG--STWTRGQAWGIYGFAL---------NSRYLGNADLLETAKRMARHFLAR 256
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 448
Score = 29.3 bits (65), Expect = 1.0
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 5/114 (4%)
Query: 196 WSVDTCTACAGTMILEMAALSRLSGLPIFEAKAHRAMDGLWAARNRDSDLMGTVLNIDSG 255
W V CTA A +L + I + A+ L RN D T G
Sbjct: 167 WIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGF-ATYETKRGG 225
Query: 256 DWIRRDSGV----GAGIDSYYEYCLKAYVLLGQDKYLSRFDKHYSAVMKYISRG 305
+ + ID Y C A + + + + + + + +++G
Sbjct: 226 HLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQG 279
>d1m6ba1 c.10.2.5 (A:8-165) Receptor protein-tyrosine kinase Erbb-3
extracellular domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 158
Score = 26.5 bits (58), Expect = 3.7
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 79 GNFSLTLIDTLDTLAILGDIEEFEHATKLISENVNFDSDIVVSVFETNIRVLGG-LLSGH 137
GN + L L+ L + E ++ V + ++ N+RV+ G +
Sbjct: 35 GNLEIVLTGHNADLSFLQWVRE-------VTGYVLVAMNEFSTLPLPNLRVVRGTQVYDG 87
Query: 138 VLAEYFKLNTDLMQWYTGQLLEL 160
A + LN + + + L L
Sbjct: 88 KFAIFVMLNYNTNSSHALRQLRL 110
>d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase
TTHA1613 {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 26.6 bits (58), Expect = 3.9
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 89 LDTLAILGDIEEFEHATKLISENVNFDSDIVVSV 122
+ + LGD E A + + V +++I+ +
Sbjct: 25 IPLVEFLGDPEFTRAAAEALRPLVPKEAEILFTT 58
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B
{Escherichia coli [TaxId: 562]}
Length = 167
Score = 26.6 bits (58), Expect = 4.2
Identities = 10/58 (17%), Positives = 19/58 (32%)
Query: 2 FSCFVHGENYNHTSKSYTNGMSKEEKMTLREESRDMFYHAYRAYMDNAYPADELMPLS 59
++ E ++SY N + + T R A R + + + LS
Sbjct: 35 WALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLS 92
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella
typhimurium [TaxId: 90371]}
Length = 411
Score = 27.0 bits (59), Expect = 4.5
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 4/47 (8%)
Query: 331 WPGLQVHWGQHPLRPEFLESTYFLYKSTGDPHYLDVGKSVLRALQTH 377
+V W E + + Y LY T D Y + + +
Sbjct: 308 IVRERVRWPI----VEAMGTAYALYTLTDDSQYEEWYQKWWDYCIKY 350
>d1hn0a1 a.102.3.2 (A:235-618) Chondroitin ABC lyase I {Proteus
vulgaris [TaxId: 585]}
Length = 384
Score = 26.1 bits (57), Expect = 8.5
Identities = 11/89 (12%), Positives = 25/89 (28%), Gaps = 9/89 (10%)
Query: 2 FSCFVHGENYNHTSKSYTNGMS------KEEKMTLREESRDMFYHAYRAYMDNAYPADEL 55
+ + H NY S S ++ ++ E + A + +
Sbjct: 262 GTAWRHEGNYPGYSFPAFKNASQLIYLLRDTPFSVGESGWNNLKKAMVS-AWIYS--NPE 318
Query: 56 MPLSCTGRWRSQHTSRGDIDDTLGNFSLT 84
+ L GR S + +++
Sbjct: 319 VGLPLAGRHPFNSPSLKSVAQGYYWLAMS 347
>d1nh2d1 a.32.1.1 (D:5-54) Small chain TOA2, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 50
Score = 23.8 bits (52), Expect = 8.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 77 TLGNFSLTLIDTLDTLAILGDIEEFEHATKLISENVNFDSDI 118
T+GN +L+D LDTL G IE A +++ FD +
Sbjct: 10 TIGN---SLVDALDTLISDGRIEA-SLAMRVL---ETFDKVV 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.424
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,493,010
Number of extensions: 69511
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 28
Length of query: 390
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,213,086
Effective search space: 367565058
Effective search space used: 367565058
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)