BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3603
(264 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|332025703|gb|EGI65861.1| SOSS complex subunit B-like protein [Acromyrmex echinatior]
Length = 243
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 114/171 (66%), Gaps = 7/171 (4%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
V IKD+ G KN+NV IVL++S KENREVRT KVADSTAC+N+S+WDEPG LL P
Sbjct: 4 VQIKDIRAGQKNINVVFIVLEVSHPTITKENREVRTFKVADSTACMNVSIWDEPGQLLMP 63
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLP---VNAPQ 149
GDIVRLTK YA +WR CLTLYS K+G I+KIGEFCMV NE ++MS P P L VN Q
Sbjct: 64 GDIVRLTKGYASVWRQCLTLYSGKNGDIQKIGEFCMVINEQVNMSEPNPMLVQQLVNRDQ 123
Query: 150 SANGNSNPGNMNNSGNNKGN---MRPNPIDRDVNRYSNNPDKGSSSSTQNT 197
S +G + N+NNS N GN + P + + SN GS S+ +T
Sbjct: 124 SGSGPPS-SNVNNSITNNGNANSISGQPGRQPLASQSNTTTAGSGSAASST 173
>gi|322788271|gb|EFZ14020.1| hypothetical protein SINV_07812 [Solenopsis invicta]
Length = 156
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
V IKD+ G KN+NV IVL++S KENREVRT KVADSTAC+N+S+WDEPG LL P
Sbjct: 4 VQIKDIRAGQKNINVVFIVLEVSHPTITKENREVRTFKVADSTACMNVSIWDEPGQLLMP 63
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDIVRLTK YA +WR CLTLYS K+G I+KIGEFCMV NE ++MS P P L V + +
Sbjct: 64 GDIVRLTKGYASVWRQCLTLYSGKNGDIQKIGEFCMVINEQVNMSDPNP-LLVQQLVNQS 122
Query: 153 GNSNPGNMNNSGNNKGN 169
G+ PGN+NNS N GN
Sbjct: 123 GSGPPGNVNNSITNNGN 139
>gi|307213538|gb|EFN88947.1| Solute carrier family 35 member C2 [Harpegnathos saltator]
Length = 509
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/140 (64%), Positives = 102/140 (72%), Gaps = 6/140 (4%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
V IKD+ G KN+NV IVL++S KENREVRT KVADSTAC+N+S+WDEPG LL P
Sbjct: 4 VMIKDIRPGQKNINVVFIVLEVSHPTITKENREVRTFKVADSTACMNVSIWDEPGQLLMP 63
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDIVRLTK YA +WR CLTLYS KSG I+KIGEFCMV NE L+MS P P L A Q N
Sbjct: 64 GDIVRLTKGYASVWRQCLTLYSGKSGDIQKIGEFCMVINEQLNMSEPNPAL---AQQLVN 120
Query: 153 --GNSNPG-NMNNSGNNKGN 169
G+ PG N+NNS N GN
Sbjct: 121 QSGSGPPGSNVNNSITNNGN 140
>gi|307166836|gb|EFN60766.1| Oligonucleotide/oligosaccharide-binding fold-containing protein 2B
[Camponotus floridanus]
Length = 240
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 89/143 (62%), Positives = 104/143 (72%), Gaps = 7/143 (4%)
Query: 31 MD-VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGAL 89
MD V IKD+ G KN+NV IVL++S KENREVRT KVADSTAC+N+S+WDEPG L
Sbjct: 1 MDYVLIKDIRAGQKNINVVFIVLEVSHPTITKENREVRTFKVADSTACMNVSIWDEPGQL 60
Query: 90 LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQ 149
L PGDIVRLTK YA +WR CLTLYS K+G I+KIGEFCMV NE ++MS P P L + Q
Sbjct: 61 LMPGDIVRLTKGYASVWRQCLTLYSGKNGDIQKIGEFCMVINEQVNMSDPNPIL---SQQ 117
Query: 150 SAN--GNSNPG-NMNNSGNNKGN 169
N G+ PG N+NNS N GN
Sbjct: 118 LVNQSGSGPPGSNVNNSITNNGN 140
>gi|94468674|gb|ABF18186.1| hypothetical conserved protein [Aedes aegypti]
Length = 215
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 101/143 (70%), Gaps = 4/143 (2%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ IKD++ G+KN+NV IVLD+ P KENREVRT KVAD +A IN+S+WDEPG LL P
Sbjct: 17 IAIKDIYPGLKNINVIFIVLDVGPVTLTKENREVRTFKVADQSAAINVSVWDEPGKLLMP 76
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPV-NAPQSA 151
GDIVRLTK YA IWR CLTLYS K+G I ++G+FC FNE ++MS P PNL V NAP
Sbjct: 77 GDIVRLTKGYAAIWRQCLTLYSGKNGEIHRLGDFCFTFNEMINMSEPNPNLGVGNAPIHG 136
Query: 152 NGNSNPGNMNNSGNNKGNMRPNP 174
NG + N++G+ G + P
Sbjct: 137 NGAA---TGNSAGSKVGGRQAAP 156
>gi|340716300|ref|XP_003396637.1| PREDICTED: solute carrier family 35 member C2-like isoform 2
[Bombus terrestris]
Length = 509
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/140 (62%), Positives = 101/140 (72%), Gaps = 6/140 (4%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
V IKD+ G KN+NV IVL++ KENREVRT KVADSTAC+N+S+WDEPG LL P
Sbjct: 4 VLIKDIRPGQKNINVVFIVLEVGHPTITKENREVRTFKVADSTACMNVSIWDEPGQLLVP 63
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDIVRLTK YA +WR CLTLYS K+G I+KIGEFCMV NE L+MS P P L A Q N
Sbjct: 64 GDIVRLTKGYASVWRQCLTLYSGKNGDIQKIGEFCMVINEQLNMSEPNPAL---AQQMIN 120
Query: 153 --GNSNPG-NMNNSGNNKGN 169
G+ PG N+NN+ N GN
Sbjct: 121 QSGSGPPGSNVNNTITNNGN 140
>gi|350406478|ref|XP_003487785.1| PREDICTED: solute carrier family 35 member C2-like [Bombus
impatiens]
Length = 509
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/140 (62%), Positives = 101/140 (72%), Gaps = 6/140 (4%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
V IKD+ G KN+NV IVL++ KENREVRT KVADSTAC+N+S+WDEPG LL P
Sbjct: 4 VLIKDIRPGQKNINVVFIVLEVGHPTITKENREVRTFKVADSTACMNVSIWDEPGQLLVP 63
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDIVRLTK YA +WR CLTLYS K+G I+KIGEFCMV NE L+MS P P L A Q N
Sbjct: 64 GDIVRLTKGYASVWRQCLTLYSGKNGDIQKIGEFCMVINEQLNMSEPNPAL---AQQMIN 120
Query: 153 --GNSNPG-NMNNSGNNKGN 169
G+ PG N+NN+ N GN
Sbjct: 121 QSGSGPPGSNVNNTITNNGN 140
>gi|157106273|ref|XP_001649250.1| hypothetical protein AaeL_AAEL014645 [Aedes aegypti]
gi|108868878|gb|EAT33103.1| AAEL014645-PA [Aedes aegypti]
Length = 229
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 101/143 (70%), Gaps = 4/143 (2%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ IKD++ G+KN+NV IVLD+ P KENREVRT KVAD +A IN+S+WDEPG LL P
Sbjct: 17 IAIKDIYPGLKNINVIFIVLDVGPVTLTKENREVRTFKVADQSAAINVSVWDEPGKLLMP 76
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPV-NAPQSA 151
GDIVRLTK YA IWR CLTLYS K+G I ++G+FC FNE ++MS P PNL V NAP
Sbjct: 77 GDIVRLTKGYAAIWRQCLTLYSGKNGEIHRLGDFCFTFNEMINMSEPNPNLGVGNAPIHG 136
Query: 152 NGNSNPGNMNNSGNNKGNMRPNP 174
NG + N++G+ G + P
Sbjct: 137 NGAA---TGNSAGSKVGGRQAVP 156
>gi|170040552|ref|XP_001848059.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167864169|gb|EDS27552.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 243
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 99/158 (62%), Gaps = 9/158 (5%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
V IKDL+ G+KNVNV IVL++ P KENREVRT KVAD +A +N+S+WDEPG LL P
Sbjct: 43 VAIKDLYPGLKNVNVIFIVLEVGPVTLTKENREVRTFKVADQSAAVNVSVWDEPGKLLMP 102
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSA- 151
GDIVRLTK Y +WR CLTLYS K+G I+++G+FC FNE L+MS P PNL A +
Sbjct: 103 GDIVRLTKGYVAVWRQCLTLYSGKNGEIQRLGDFCFTFNEMLNMSEPNPNLTAVAATAGG 162
Query: 152 --------NGNSNPGNMNNSGNNKGNMRPNPIDRDVNR 181
G G + G+ G +P + V +
Sbjct: 163 AHGNGATPGGKGGAGRQQSGGDGAGGNQPGGVGAKVGQ 200
>gi|345490630|ref|XP_001601525.2| PREDICTED: SOSS complex subunit B homolog [Nasonia vitripennis]
Length = 147
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 88/111 (79%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
V IKD+ G KN+NV IVL++ KENREVRTLKVADSTAC+N+S+WDEPG LL P
Sbjct: 4 VLIKDIRPGQKNINVVFIVLEVGHPTITKENREVRTLKVADSTACMNVSIWDEPGTLLMP 63
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
GDIVRLTK YA +WRNCLTLYS K+G I+KIG+FCMV NE L+MS P P L
Sbjct: 64 GDIVRLTKGYASVWRNCLTLYSGKNGDIQKIGDFCMVINEQLNMSEPNPTL 114
>gi|383858433|ref|XP_003704706.1| PREDICTED: solute carrier family 35 member C2-like [Megachile
rotundata]
Length = 509
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 94/129 (72%), Gaps = 5/129 (3%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
V IKD+ G KN+NV IVL++ KENREVRT KVADSTAC+N+S+WDEPG LL P
Sbjct: 4 VLIKDIRPGQKNINVVFIVLEVGHPTITKENREVRTFKVADSTACMNVSIWDEPGQLLVP 63
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDIVRLTK YA +WR CLTLYS K+G I+KIGEFCMV NE L+MS P P L A Q N
Sbjct: 64 GDIVRLTKGYASVWRQCLTLYSGKNGDIQKIGEFCMVINEQLNMSEPNPAL---AQQMIN 120
Query: 153 --GNSNPGN 159
G+ PG+
Sbjct: 121 QSGSGPPGS 129
>gi|91079266|ref|XP_972113.1| PREDICTED: similar to CG5181 CG5181-PA [Tribolium castaneum]
gi|270004308|gb|EFA00756.1| hypothetical protein TcasGA2_TC003641 [Tribolium castaneum]
Length = 196
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 79/140 (56%), Positives = 92/140 (65%), Gaps = 1/140 (0%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
V IKD+ G+KN+ IVL++ KENREVRT KVAD T CIN S+WDE G LL P
Sbjct: 6 VQIKDMRPGLKNIAAVFIVLEVGHPTVTKENREVRTFKVADQTGCINASVWDEAGQLLVP 65
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDIVRLTK Y IWRNCLTLY+SK G ++KIGEFCMVFNE L+MS P P P
Sbjct: 66 GDIVRLTKGYLSIWRNCLTLYTSKGGDLQKIGEFCMVFNEQLNMSEPNQAFPQAPPACGP 125
Query: 153 GNSNPGNMNNSGNNKGNMRP 172
N+ P N N + N G + P
Sbjct: 126 PNNLPLN-NGTNNGAGRIGP 144
>gi|380018082|ref|XP_003692965.1| PREDICTED: solute carrier family 35 member C2-like [Apis florea]
Length = 508
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 85/111 (76%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
V IKD+ G KN+NV IVL++ KENREVRT KVAD TAC+N+S+WDEPG LL P
Sbjct: 4 VLIKDIRPGQKNINVVFIVLEVGHPTITKENREVRTFKVADGTACMNVSIWDEPGQLLVP 63
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
GDIVRLTK YA +WR CLTLYS K+G I+KIGEFCMV NE L+MS P P L
Sbjct: 64 GDIVRLTKGYASVWRQCLTLYSGKNGDIQKIGEFCMVINEQLNMSEPNPAL 114
>gi|328785793|ref|XP_001122715.2| PREDICTED: solute carrier family 35 member C2-like [Apis mellifera]
Length = 508
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 85/111 (76%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
V IKD+ G KN+NV IVL++ KENREVRT KVAD TAC+N+S+WDEPG LL P
Sbjct: 4 VLIKDIRPGQKNINVVFIVLEVGHPTITKENREVRTFKVADGTACMNVSIWDEPGQLLVP 63
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
GDIVRLTK YA +WR CLTLYS K+G I+KIGEFCMV NE L+MS P P L
Sbjct: 64 GDIVRLTKGYASVWRQCLTLYSGKNGDIQKIGEFCMVINEQLNMSEPNPAL 114
>gi|242017665|ref|XP_002429308.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212514204|gb|EEB16570.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 220
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/113 (61%), Positives = 89/113 (78%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALL 90
MDV IKD+ G KN+NV I+L++ KENREVR+ KVAD+TACIN+S+WDEPG L
Sbjct: 3 MDVQIKDIRPGQKNLNVVFIILEVGHPTITKENREVRSCKVADATACINVSIWDEPGQHL 62
Query: 91 HPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
PGDIV+LT+ YA ++R+ LTLY+ K+G ++KIGEFCMVFNE L+MS P P+L
Sbjct: 63 VPGDIVKLTRGYAAVFRDSLTLYTGKTGDLQKIGEFCMVFNEQLNMSEPNPSL 115
>gi|195577287|ref|XP_002078504.1| GD22496 [Drosophila simulans]
gi|194190513|gb|EDX04089.1| GD22496 [Drosophila simulans]
Length = 204
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 93/138 (67%), Gaps = 7/138 (5%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ IKD+ G+KN+NV IVL++ KENREVR KV D TACIN+S+WDEPG L+ P
Sbjct: 7 IPIKDIKPGLKNINVIFIVLEVGVATVTKENREVRNFKVGDPTACINVSIWDEPGKLIAP 66
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDIVRLTK YA IWR+CLTLYS K+G + KIGEFCMVFNE+++MS P A Q A
Sbjct: 67 GDIVRLTKGYASIWRHCLTLYSGKNGEVFKIGEFCMVFNESVNMS-----EPKRAEQQAV 121
Query: 153 GN--SNPGNMNNSGNNKG 168
N + P + G G
Sbjct: 122 ANPAATPAGLPAGGGTSG 139
>gi|195338909|ref|XP_002036066.1| GM13565 [Drosophila sechellia]
gi|194129946|gb|EDW51989.1| GM13565 [Drosophila sechellia]
Length = 204
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 84/107 (78%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ IKD+ G+KN+NV IVL++ KENREVR KV D TACIN+S+WDEPG L+ P
Sbjct: 7 IPIKDIKPGLKNINVIFIVLEVGVATVTKENREVRNFKVGDPTACINVSIWDEPGKLIAP 66
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
GDIVRLTK YA IWR+CLTLYS K+G + KIGEFCMVFNE+++MS P
Sbjct: 67 GDIVRLTKGYASIWRHCLTLYSGKNGEVFKIGEFCMVFNESVNMSEP 113
>gi|357627887|gb|EHJ77418.1| hypothetical protein KGM_05663 [Danaus plexippus]
Length = 188
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 84/105 (80%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
V IKDL G+KN+N IVL++ KE REVRTL+VAD++A +NLS+WDEPGALL P
Sbjct: 7 VQIKDLKPGMKNINAIFIVLEVGLPTLTKEAREVRTLRVADASASVNLSVWDEPGALLQP 66
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
GDIVRLT+ YA +WR+ LTLYS KSG I+K+GEFCM+FNE ++MS
Sbjct: 67 GDIVRLTRGYASLWRSALTLYSGKSGDIQKVGEFCMLFNEQVNMS 111
>gi|158292749|ref|XP_314101.4| AGAP005201-PA [Anopheles gambiae str. PEST]
gi|157017139|gb|EAA09404.5| AGAP005201-PA [Anopheles gambiae str. PEST]
Length = 235
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 85/115 (73%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
IKD++ G+KN+NV I+L+I P KENREVRT KVAD +A IN+S+WDEPG L PGD
Sbjct: 17 IKDIYPGMKNINVIFIILEIGPVTLTKENREVRTFKVADQSAAINVSIWDEPGKQLLPGD 76
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQ 149
IVRLTK YA +WR LTLYS K+G I ++G+FC FNE ++MS P PNL PQ
Sbjct: 77 IVRLTKGYANVWRQSLTLYSGKNGEIVRLGDFCYTFNEMVNMSEPNPNLAAPMPQ 131
>gi|194862848|ref|XP_001970153.1| GG23534 [Drosophila erecta]
gi|190662020|gb|EDV59212.1| GG23534 [Drosophila erecta]
Length = 204
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/105 (64%), Positives = 83/105 (79%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
IKD+ G+KN+NV IVL++ KENREVR KV D TACIN+S+WDEPG L+ PGD
Sbjct: 9 IKDIKPGLKNINVIFIVLEVGVATVTKENREVRNFKVGDPTACINVSIWDEPGKLIAPGD 68
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
IVRLTK YA IWR+CLTLYS K+G + KIGE+CMVFNE+++MS P
Sbjct: 69 IVRLTKGYASIWRHCLTLYSGKNGEVFKIGEYCMVFNESVNMSEP 113
>gi|195117338|ref|XP_002003204.1| GI17785 [Drosophila mojavensis]
gi|193913779|gb|EDW12646.1| GI17785 [Drosophila mojavensis]
Length = 182
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/114 (61%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ IKD+ G+KN+NV IVL++ KENREVR KV D TA IN+S+WDEPG L+ P
Sbjct: 7 IAIKDIKPGLKNINVIFIVLEVGVATVTKENREVRNFKVGDPTASINVSIWDEPGKLITP 66
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPI-PNLPV 145
GDI+RLTK YA IWR+CLTLYS K+G + KIGEFCM+FNE L+MS P P PV
Sbjct: 67 GDIIRLTKGYASIWRHCLTLYSGKNGEVFKIGEFCMIFNEALNMSEPKRPETPV 120
>gi|20129311|ref|NP_609115.1| CG5181 [Drosophila melanogaster]
gi|74869838|sp|Q9VM17.1|SOSSB_DROME RecName: Full=SOSS complex subunit B homolog
gi|7297247|gb|AAF52511.1| CG5181 [Drosophila melanogaster]
gi|33589496|gb|AAQ22515.1| LD31278p [Drosophila melanogaster]
gi|220944266|gb|ACL84676.1| CG5181-PA [synthetic construct]
gi|220954114|gb|ACL89600.1| CG5181-PA [synthetic construct]
Length = 204
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/105 (64%), Positives = 83/105 (79%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
IKD+ G+KN+NV IVL++ KENREVR KV D TACIN+S+WDEPG L+ PGD
Sbjct: 9 IKDIKPGLKNINVIFIVLEVGVATVTKENREVRNFKVGDPTACINVSIWDEPGKLIAPGD 68
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
IVRLTK YA IWR+CLTLYS K+G + KIGE+CMVFNE+++MS P
Sbjct: 69 IVRLTKGYASIWRHCLTLYSGKNGEVFKIGEYCMVFNESVNMSEP 113
>gi|195437958|ref|XP_002066904.1| GK24725 [Drosophila willistoni]
gi|194162989|gb|EDW77890.1| GK24725 [Drosophila willistoni]
Length = 199
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 84/105 (80%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
IKD+ G+KN+NV IVL++ KENREVR KV D TACIN+S+WDEPG L++PGD
Sbjct: 9 IKDIKPGLKNINVIFIVLEVGVATVTKENREVRNFKVGDPTACINVSIWDEPGKLINPGD 68
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
I+R++K YA IWR+CLTLYS K+G + KIGEFCM+FNE+++MS P
Sbjct: 69 IIRMSKGYASIWRHCLTLYSGKNGEVNKIGEFCMIFNESINMSEP 113
>gi|195471513|ref|XP_002088047.1| GE18360 [Drosophila yakuba]
gi|194174148|gb|EDW87759.1| GE18360 [Drosophila yakuba]
Length = 204
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/105 (64%), Positives = 83/105 (79%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
IKD+ G+KN+NV IVL++ KENREVR KV D TACIN+S+WDEPG L+ PGD
Sbjct: 9 IKDIKPGLKNINVIFIVLEVGVATVTKENREVRNFKVGDPTACINVSIWDEPGKLIAPGD 68
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
IVRLTK YA IWR+CLTLYS K+G + KIGE+CMVFNE+++MS P
Sbjct: 69 IVRLTKGYASIWRHCLTLYSGKNGEVFKIGEYCMVFNESVNMSEP 113
>gi|195052427|ref|XP_001993299.1| GH13147 [Drosophila grimshawi]
gi|193900358|gb|EDV99224.1| GH13147 [Drosophila grimshawi]
Length = 187
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 89/122 (72%), Gaps = 1/122 (0%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ IKD+ G+KN+NV IVL++ KENREVR KV D TA IN+S+WDEPG L+ P
Sbjct: 7 IAIKDIKPGLKNINVIFIVLEVGVATVTKENREVRNFKVGDPTASINVSIWDEPGKLITP 66
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNA-PQSA 151
GDI+RLTK YA IWR+CLTLYS K+G + KIGEFCM+FNE L+MS P P +A PQ+
Sbjct: 67 GDIIRLTKGYASIWRHCLTLYSGKNGEVFKIGEFCMIFNEALNMSEPKRAEPSSAVPQAG 126
Query: 152 NG 153
G
Sbjct: 127 LG 128
>gi|195387762|ref|XP_002052561.1| GJ17611 [Drosophila virilis]
gi|194149018|gb|EDW64716.1| GJ17611 [Drosophila virilis]
Length = 184
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 88/120 (73%), Gaps = 1/120 (0%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ IKD+ G+KN+NV IVL++ KENREVR KV D TA IN+S+WDEPG L+ P
Sbjct: 7 IAIKDIKPGLKNINVIFIVLEVGVATVTKENREVRNFKVGDPTASINVSIWDEPGKLIAP 66
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVN-APQSA 151
GDI+RLTK YA IWR+CLTLYS K+G + KIGEFCM+FNE L+MS P P + APQ+
Sbjct: 67 GDIIRLTKGYASIWRHCLTLYSGKNGEVFKIGEFCMIFNEALNMSEPKRGDPQSPAPQAG 126
>gi|194762254|ref|XP_001963269.1| GF14026 [Drosophila ananassae]
gi|190616966|gb|EDV32490.1| GF14026 [Drosophila ananassae]
Length = 200
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 82/107 (76%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ IKD+ G+KN+NV IVL++ KENREVR KV D TA IN+S+WDEPG L+ P
Sbjct: 7 IPIKDIKPGLKNINVIFIVLEVGVATVTKENREVRNFKVGDPTASINVSIWDEPGKLITP 66
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
GDI+RLTK YA IWR+CLTLYS K+G + KIGEFCM+FNE L+MS P
Sbjct: 67 GDIIRLTKGYASIWRHCLTLYSGKNGEVFKIGEFCMIFNEGLNMSEP 113
>gi|242247049|ref|NP_001156168.1| SOSS complex subunit B2-like [Acyrthosiphon pisum]
gi|239790847|dbj|BAH71958.1| ACYPI004613 [Acyrthosiphon pisum]
Length = 177
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 75/140 (53%), Positives = 101/140 (72%), Gaps = 2/140 (1%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
IKD+ + N+ V CIVL+++P V LK+N EVRT+KVADS+ACIN S+WDEPG+ L+PGD
Sbjct: 19 IKDIQNNVNNITVMCIVLEVNPAVQLKDNHEVRTVKVADSSACINFSVWDEPGSFLYPGD 78
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS-IPIPNLPVNAPQSANG 153
I+R+ + YA +RNCLTLY K+G IEKIG+F M FNE+++MS I + P P +NG
Sbjct: 79 IIRVHRAYAIYFRNCLTLYVGKNGEIEKIGDFIMTFNESVNMSEINLNAPPPQPPPGSNG 138
Query: 154 NSNPGNMNNSGNNKGNMRPN 173
N+ N +G K NM+PN
Sbjct: 139 NA-ISNARRTGVGKQNMKPN 157
>gi|195155609|ref|XP_002018694.1| GL25935 [Drosophila persimilis]
gi|194114847|gb|EDW36890.1| GL25935 [Drosophila persimilis]
Length = 198
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 83/107 (77%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ IKD+ G+KN+NV IVLD+ KENREVR KV D TA IN+S+WDEPG L+ P
Sbjct: 7 IPIKDIKPGLKNINVIFIVLDVGSATVTKENREVRNFKVGDHTASINVSIWDEPGKLIIP 66
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
GDI+RLTK YA +WR+CLTLYS K+G + KIGEFCM+FNEN++MS P
Sbjct: 67 GDIIRLTKGYACLWRHCLTLYSGKNGEVFKIGEFCMIFNENINMSEP 113
>gi|389609483|dbj|BAM18353.1| similar to CG5181 [Papilio xuthus]
Length = 161
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 96/146 (65%), Gaps = 2/146 (1%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
V IKD+ G++N+N IVL++ P + K+ E+R L+VAD TA IN S+WDE GALL P
Sbjct: 7 VQIKDIKAGMRNINSVFIVLEVGPPILTKQGHEIRILRVADPTAMINFSVWDEAGALLQP 66
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDIVRLT+ YA +WR LTLYS K G I+K+ EFCMVFNE L+MS P P L + +
Sbjct: 67 GDIVRLTRGYAALWRCSLTLYSGKFGDIQKVDEFCMVFNEELNMSEPQPALAAMSQGQHH 126
Query: 153 GNSNPGNM--NNSGNNKGNMRPNPID 176
++ P ++ N + ++ N + P D
Sbjct: 127 SHAAPLSLMPNAASGDQLNSKQEPFD 152
>gi|125987357|ref|XP_001357441.1| GA18715 [Drosophila pseudoobscura pseudoobscura]
gi|54645772|gb|EAL34510.1| GA18715 [Drosophila pseudoobscura pseudoobscura]
Length = 198
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 83/107 (77%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ IKD+ G+KN+NV IVLD+ KENREVR KV D TA IN+S+WDEPG L+ P
Sbjct: 7 IPIKDIKPGLKNINVIFIVLDVGSATVTKENREVRNFKVGDHTASINVSIWDEPGKLIIP 66
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
GDI+RLTK YA +WR+CLTLYS K+G + KIGEFCM+FNEN++MS P
Sbjct: 67 GDIIRLTKGYACLWRHCLTLYSGKNGEVFKIGEFCMIFNENINMSEP 113
>gi|410969092|ref|XP_003991031.1| PREDICTED: SOSS complex subunit B2 [Felis catus]
Length = 204
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 91/147 (61%), Gaps = 3/147 (2%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 LFIKDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+ Q +
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDY---RGQQSR 125
Query: 153 GNSNPGNMNNSGNNKGNMRPNPIDRDV 179
G N N+ NN G P+ V
Sbjct: 126 GAQNEQKNNSMNNNMGTGTFGPVGNGV 152
>gi|301765248|ref|XP_002918042.1| PREDICTED: SOSS complex subunit B2-like [Ailuropoda melanoleuca]
gi|281353013|gb|EFB28597.1| hypothetical protein PANDA_006424 [Ailuropoda melanoleuca]
Length = 204
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 91/147 (61%), Gaps = 3/147 (2%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 LFIKDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+ Q +
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDY---RGQQSR 125
Query: 153 GNSNPGNMNNSGNNKGNMRPNPIDRDV 179
G N N+ NN G P+ V
Sbjct: 126 GAHNEQKNNSMNNNMGTGTFGPVGNGV 152
>gi|395859087|ref|XP_003801877.1| PREDICTED: SOSS complex subunit B2 [Otolemur garnettii]
Length = 202
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 89/141 (63%), Gaps = 7/141 (4%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 LFIKDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQ--- 149
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+ +
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYQGQQNKGSE 128
Query: 150 ----SANGNSNPGNMNNSGNN 166
S NGN G + GN+
Sbjct: 129 QRSNSMNGNMGTGTFGSMGND 149
>gi|395519944|ref|XP_003764100.1| PREDICTED: SOSS complex subunit B2 isoform 1 [Sarcophilus harrisii]
Length = 212
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 3/146 (2%)
Query: 34 YIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPG 93
+IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ PG
Sbjct: 10 FIKDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQPG 69
Query: 94 DIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSANG 153
DI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+ + A+G
Sbjct: 70 DIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYLGQQNKVAHG 129
Query: 154 NSNPGNMNNSGNNKGNMRPNPIDRDV 179
N+S +N G PI V
Sbjct: 130 EQ---KNNSSASNMGTGTFGPIGNGV 152
>gi|348586005|ref|XP_003478761.1| PREDICTED: SOSS complex subunit B2-like [Cavia porcellus]
Length = 204
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 91/149 (61%), Gaps = 3/149 (2%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALL 90
+ ++IKD+ G KN+N+ IVL+I K+ EVR+ KVAD T I +S+WDE G L+
Sbjct: 7 LPIFIKDIKPGQKNLNIVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLI 66
Query: 91 HPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQS 150
PGDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+ Q
Sbjct: 67 QPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDY---RGQP 123
Query: 151 ANGNSNPGNMNNSGNNKGNMRPNPIDRDV 179
+ G N N+ +N G P+ V
Sbjct: 124 SKGAHNEQKTNSMNSNAGTGTFGPVGNGV 152
>gi|402888935|ref|XP_003907794.1| PREDICTED: SOSS complex subunit B2 [Papio anubis]
Length = 204
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 85/130 (65%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++I+D+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 IFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+ + A
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYRGQQNKGAQ 128
Query: 153 GNSNPGNMNN 162
+MNN
Sbjct: 129 SEQKNNSMNN 138
>gi|387762779|ref|NP_001248657.1| SOSS complex subunit B2 [Macaca mulatta]
gi|355565052|gb|EHH21541.1| hypothetical protein EGK_04635 [Macaca mulatta]
gi|383413097|gb|AFH29762.1| SOSS complex subunit B2 [Macaca mulatta]
gi|383420865|gb|AFH33646.1| SOSS complex subunit B2 [Macaca mulatta]
gi|384941346|gb|AFI34278.1| SOSS complex subunit B2 [Macaca mulatta]
Length = 204
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 91/147 (61%), Gaps = 3/147 (2%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++I+D+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 IFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+ Q
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDY---RGQQNK 125
Query: 153 GNSNPGNMNNSGNNKGNMRPNPIDRDV 179
G + N++ NN G P+ V
Sbjct: 126 GAQSEQKNNSTNNNMGTGTFGPVGNGV 152
>gi|297669062|ref|XP_002812727.1| PREDICTED: SOSS complex subunit B2 [Pongo abelii]
Length = 204
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++I+D+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 IFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+ QS
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDY--RGQQSKG 126
Query: 153 GNSNPGNMNNSGNNKGNMRPNPIDRDVN 180
S N N++ +N G P+ V+
Sbjct: 127 AQSEQKN-NSTHSNMGTGTFGPVGNGVH 153
>gi|355750707|gb|EHH55034.1| hypothetical protein EGM_04161 [Macaca fascicularis]
Length = 204
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 91/147 (61%), Gaps = 3/147 (2%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++I+D+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 IFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+ Q
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDY---RGQQNK 125
Query: 153 GNSNPGNMNNSGNNKGNMRPNPIDRDV 179
G + N++ NN G P+ V
Sbjct: 126 GAQSEQKNNSTNNNMGTGTFGPVGNGV 152
>gi|126326445|ref|XP_001369655.1| PREDICTED: SOSS complex subunit B2-like isoform 1 [Monodelphis
domestica]
Length = 212
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 3/146 (2%)
Query: 34 YIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPG 93
+IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ PG
Sbjct: 10 FIKDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQPG 69
Query: 94 DIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSANG 153
DI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+ + A+G
Sbjct: 70 DIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYLGQQNKVAHG 129
Query: 154 NSNPGNMNNSGNNKGNMRPNPIDRDV 179
N+S +N G PI V
Sbjct: 130 EQ---KNNSSASNLGTGTFGPIGNGV 152
>gi|290561649|gb|ADD38224.1| SOSS complex subunit B1 [Lepeophtheirus salmonis]
Length = 209
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 93/143 (65%), Gaps = 7/143 (4%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ ++ L G+K++ + CIVL+I K+ EVRT+KVAD T +NLSLWDEPG L++
Sbjct: 5 ISVRSLKPGLKDLQLKCIVLEIGRPNLTKDGHEVRTVKVADRTGSVNLSLWDEPGKLINC 64
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLP-----VNA 147
GDIVRL+K Y +W+NCLTLY K G + K+GEFC+V++E +S P L + A
Sbjct: 65 GDIVRLSKVYTNVWKNCLTLYIGKGGELSKVGEFCLVYSETPFLSEPSLELAAVQAQIQA 124
Query: 148 PQSANGNSNPGNM--NNSGNNKG 168
++A NS PG M NN+G + G
Sbjct: 125 DRAAANNSGPGKMYSNNNGPSGG 147
>gi|291391934|ref|XP_002712397.1| PREDICTED: oligonucleotide/oligosaccharide-binding fold containing
2A [Oryctolagus cuniculus]
Length = 204
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 79/110 (71%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 LFIKDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 118
>gi|347300215|ref|NP_001231420.1| SOSS complex subunit B2 [Sus scrofa]
Length = 204
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 79/110 (71%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 LFIKDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 118
>gi|118093378|ref|XP_421902.2| PREDICTED: SOSS complex subunit B2 [Gallus gallus]
Length = 209
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 77/107 (71%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
V+IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G+L+ P
Sbjct: 9 VFIKDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGSLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
GDI+RLTK YA +W+ CLTLY+ + G + KIGEFCMV++E + S P
Sbjct: 69 GDIIRLTKGYASLWKGCLTLYTGRGGELHKIGEFCMVYSEVPNFSEP 115
>gi|114582307|ref|XP_001167708.1| PREDICTED: SOSS complex subunit B2 isoform 5 [Pan troglodytes]
gi|397509878|ref|XP_003825338.1| PREDICTED: SOSS complex subunit B2 [Pan paniscus]
gi|410218448|gb|JAA06443.1| oligonucleotide/oligosaccharide-binding fold containing 2A [Pan
troglodytes]
gi|410263302|gb|JAA19617.1| oligonucleotide/oligosaccharide-binding fold containing 2A [Pan
troglodytes]
gi|410289352|gb|JAA23276.1| oligonucleotide/oligosaccharide-binding fold containing 2A [Pan
troglodytes]
gi|410331411|gb|JAA34652.1| oligonucleotide/oligosaccharide-binding fold containing 2A [Pan
troglodytes]
Length = 204
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 79/110 (71%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++I+D+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 IFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 118
>gi|148225685|ref|NP_001084896.1| SOSS complex subunit B1-B [Xenopus laevis]
gi|82185218|sp|Q6NRF9.1|SOB1B_XENLA RecName: Full=SOSS complex subunit B1-B; AltName: Full=Nucleic
acid-binding protein 2-B; AltName:
Full=Oligonucleotide/oligosaccharide-binding
fold-containing protein 2B-B; AltName: Full=Sensor of
single-strand DNA complex subunit B1-B; AltName:
Full=Sensor of ssDNA subunit B1-B; Short=SOSS-B1-B;
AltName: Full=Single-stranded DNA-binding protein 1-B
gi|47123142|gb|AAH70793.1| Obfc2b-b protein [Xenopus laevis]
Length = 203
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN++V IVL+ K+ EVRT KVAD T IN+S+WDE G +
Sbjct: 4 ETFVKDVKPGLKNLSVLFIVLETGRVTKTKDGHEVRTCKVADKTGTINISVWDEVGNFIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSA 151
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P Q+
Sbjct: 64 PGDIIRLTKGYASLFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYTAQQSQNK 123
Query: 152 NGNSNPGNMNNSGNNKGNMRPNPIDRDVNRYSNNPDKGSSSST 194
+ G N+ N+ P P D D SN+ ++ ST
Sbjct: 124 QAQAESGTGTNNHNSSSPAPPAP-DLDNGNGSNSSGPSTNQST 165
>gi|72534722|ref|NP_001026886.1| SOSS complex subunit B2 isoform 1 [Homo sapiens]
gi|74760705|sp|Q96AH0.1|SOSB2_HUMAN RecName: Full=SOSS complex subunit B2; AltName: Full=Nucleic
acid-binding protein 1; AltName:
Full=Oligonucleotide/oligosaccharide-binding
fold-containing protein 2A; AltName: Full=Sensor of
single-strand DNA complex subunit B2; AltName:
Full=Sensor of ssDNA subunit B2; Short=SOSS-B2; AltName:
Full=Single-stranded DNA-binding protein 2; Short=hSSB2
gi|16877754|gb|AAH17114.1| Oligonucleotide/oligosaccharide-binding fold containing 2A [Homo
sapiens]
gi|62988961|gb|AAY24348.1| unknown [Homo sapiens]
gi|119631243|gb|EAX10838.1| oligonucleotide/oligosaccharide-binding fold containing 2A, isoform
CRA_d [Homo sapiens]
Length = 204
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 79/110 (71%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++I+D+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 IFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 118
>gi|312151870|gb|ADQ32447.1| oligonucleotide/oligosaccharide-binding fold containing 2A
[synthetic construct]
Length = 204
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 79/110 (71%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++I+D+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 IFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 118
>gi|296205116|ref|XP_002749621.1| PREDICTED: SOSS complex subunit B2-like isoform 2 [Callithrix
jacchus]
Length = 204
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 78/110 (70%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++I+D+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 IFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPG 118
>gi|426338076|ref|XP_004033018.1| PREDICTED: SOSS complex subunit B2 isoform 1 [Gorilla gorilla
gorilla]
Length = 204
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 79/110 (71%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++I+D+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 IFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 118
>gi|332209627|ref|XP_003253916.1| PREDICTED: SOSS complex subunit B2 isoform 1 [Nomascus leucogenys]
Length = 204
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 79/110 (71%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++I+D+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 IFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 118
>gi|417397041|gb|JAA45554.1| Putative soss complex subunit b2 [Desmodus rotundus]
Length = 204
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 79/110 (71%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 LFIKDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 118
>gi|431895005|gb|ELK04798.1| SOSS complex subunit B2 [Pteropus alecto]
Length = 204
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 79/110 (71%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 LFIKDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSELPNFSEPNPD 118
>gi|148222146|ref|NP_001091593.1| SOSS complex subunit B2 [Bos taurus]
gi|189029262|sp|A5D7P8.1|SOSB2_BOVIN RecName: Full=SOSS complex subunit B2; AltName: Full=Nucleic
acid-binding protein 1; AltName:
Full=Oligonucleotide/oligosaccharide-binding
fold-containing protein 2A; AltName: Full=Sensor of
single-strand DNA complex subunit B2; AltName:
Full=Sensor of ssDNA subunit B2; Short=SOSS-B2; AltName:
Full=Single-stranded DNA-binding protein 2
gi|146186845|gb|AAI40639.1| OBFC2A protein [Bos taurus]
gi|296490476|tpg|DAA32589.1| TPA: SOSS complex subunit B2 [Bos taurus]
gi|440899877|gb|ELR51124.1| SOSS complex subunit B2 [Bos grunniens mutus]
Length = 206
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 79/110 (71%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 LFIKDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSELPNFSEPNPD 118
>gi|395519946|ref|XP_003764101.1| PREDICTED: SOSS complex subunit B2 isoform 2 [Sarcophilus harrisii]
Length = 187
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 97/167 (58%), Gaps = 2/167 (1%)
Query: 34 YIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPG 93
+IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ PG
Sbjct: 10 FIKDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQPG 69
Query: 94 DIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSANG 153
DI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+ ++
Sbjct: 70 DIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYLGQQNKAHGE 129
Query: 154 NSNPGNMNNSGNNKGNMRPNPIDRDVNRYSNNPDKGSSSSTQNTWVT 200
N + +N G G P R R NP ++++ Q T
Sbjct: 130 QKNNSSASNMGT--GTFGPIGTGRANGRGPVNPQLPATANVQPVVTT 174
>gi|334330317|ref|XP_003341337.1| PREDICTED: SOSS complex subunit B2-like isoform 2 [Monodelphis
domestica]
Length = 187
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 97/167 (58%), Gaps = 2/167 (1%)
Query: 34 YIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPG 93
+IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ PG
Sbjct: 10 FIKDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQPG 69
Query: 94 DIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSANG 153
DI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+ ++
Sbjct: 70 DIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYLGQQNKAHGE 129
Query: 154 NSNPGNMNNSGNNKGNMRPNPIDRDVNRYSNNPDKGSSSSTQNTWVT 200
N + +N G G P R R NP ++++ Q T
Sbjct: 130 QKNNSSASNLGT--GTFGPIGTGRANGRGPVNPQLPAAANVQPVVTT 174
>gi|291389431|ref|XP_002711118.1| PREDICTED: oligonucleotide/oligosaccharide-binding fold containing
2B [Oryctolagus cuniculus]
Length = 211
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 93/150 (62%), Gaps = 16/150 (10%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP--------IPNL 143
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P PN
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNK 123
Query: 144 PVN------APQSANG--NSNPGNMNNSGN 165
V APQ A G S+P + N +GN
Sbjct: 124 AVQNDSSPTAPQPAGGPPASSPASENQNGN 153
>gi|410897343|ref|XP_003962158.1| PREDICTED: SOSS complex subunit B2-like [Takifugu rubripes]
Length = 213
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 13/149 (8%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
V IKD+ G KN+N+ IVL+I K+ EVR+ KVAD T I +S+WDE G+L+ P
Sbjct: 10 VLIKDVKPGSKNLNIVFIVLEIGRVTKTKDGHEVRSCKVADKTGSIAISVWDELGSLIQP 69
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL--------- 143
GDI++LT+ YA IW+ CLTLY+ + G ++KIGEFCMV++E + S P P L
Sbjct: 70 GDIIKLTRGYASIWKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPELLSQTNQQNK 129
Query: 144 PVNAPQSANGNSNPGNMNNSGNNKGNMRP 172
Q+ GNS P NSGN G+M P
Sbjct: 130 SGKPDQAQRGNSPPN--QNSGN--GSMPP 154
>gi|327265356|ref|XP_003217474.1| PREDICTED: SOSS complex subunit B2-like [Anolis carolinensis]
Length = 189
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 83/121 (68%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G+L+ P
Sbjct: 9 LFIKDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDELGSLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDI+RLTK YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P + A + A
Sbjct: 69 GDIIRLTKGYASLWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNSDHQGQATKPAQ 128
Query: 153 G 153
G
Sbjct: 129 G 129
>gi|290561913|gb|ADD38354.1| SOSS complex subunit B1 [Lepeophtheirus salmonis]
Length = 209
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 92/143 (64%), Gaps = 7/143 (4%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ ++ L G+K++ + CIVL+I K+ EVRT+KVAD T +NLSLWDEPG L++
Sbjct: 5 ISVRSLKPGLKDLQLKCIVLEIGRPNLTKDGHEVRTVKVADRTGSVNLSLWDEPGKLINC 64
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLP-----VNA 147
GDIVRL+K Y +W+NCLTLY K G + K+GEFC+V++ +S P L + A
Sbjct: 65 GDIVRLSKVYTNVWKNCLTLYIGKGGELSKVGEFCLVYSGTPFLSEPSLELAAVQAQIQA 124
Query: 148 PQSANGNSNPGNM--NNSGNNKG 168
++A NS PG M NN+G + G
Sbjct: 125 DRAAANNSGPGKMYSNNNGPSGG 147
>gi|119631240|gb|EAX10835.1| oligonucleotide/oligosaccharide-binding fold containing 2A, isoform
CRA_a [Homo sapiens]
Length = 161
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 90/145 (62%), Gaps = 3/145 (2%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++I+D+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 IFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+ + A
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYRGQQNKGAQ 128
Query: 153 GNSNPGNMNNSGNNKGNMRPNPIDR 177
+MN +N G P+ +
Sbjct: 129 SEQKNNSMN---SNMGTGTFGPVGK 150
>gi|26324838|dbj|BAC26173.1| unnamed protein product [Mus musculus]
Length = 198
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 78/110 (70%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+
Sbjct: 9 LFIKDIKAGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADRTGSITISVWDEIGGLIQT 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 118
>gi|56693359|ref|NP_001008643.1| SOSS complex subunit B2 [Danio rerio]
gi|82179772|sp|Q5PRC7.1|SOSB2_DANRE RecName: Full=SOSS complex subunit B2; AltName: Full=Nucleic
acid-binding protein 1; AltName:
Full=Oligonucleotide/oligosaccharide-binding
fold-containing protein 2A; AltName: Full=Sensor of
single-strand DNA complex subunit B2; AltName:
Full=Sensor of ssDNA subunit B2; Short=SOSS-B2; AltName:
Full=Single-stranded DNA-binding protein 2
gi|56269706|gb|AAH86713.1| Zgc:101644 [Danio rerio]
Length = 211
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 94/158 (59%), Gaps = 12/158 (7%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ IKD+ G KN+N+ IVL+I K+ EVR+ +VAD + I +S+WDE G+L+ P
Sbjct: 10 ILIKDVKPGSKNLNIVFIVLEIGRVTKTKDGHEVRSCRVADKSGSIAISVWDELGSLIQP 69
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQS-- 150
GDI+RLT+ YA IW+ CLTLY+ + G ++KIGEFCMV++E + S P P L A Q
Sbjct: 70 GDIIRLTRGYASIWKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPELLAQANQQNK 129
Query: 151 ----ANGNSNPGNMNNSGNNK----GNMRPNPIDRDVN 180
GNS P N+GN N P+ RD N
Sbjct: 130 TSKEQRGNSPPN--QNAGNGTVPVFSNNNAAPVPRDPN 165
>gi|126723205|ref|NP_082972.2| SOSS complex subunit B2 [Mus musculus]
gi|81896055|sp|Q8BGW5.1|SOSB2_MOUSE RecName: Full=SOSS complex subunit B2; AltName: Full=Nucleic
acid-binding protein 1; AltName:
Full=Oligonucleotide/oligosaccharide-binding
fold-containing protein 2A; AltName: Full=Sensor of
single-strand DNA complex subunit B2; AltName:
Full=Sensor of ssDNA subunit B2; Short=SOSS-B2; AltName:
Full=Single-stranded DNA-binding protein 2
gi|26340138|dbj|BAC33732.1| unnamed protein product [Mus musculus]
gi|26350845|dbj|BAC39059.1| unnamed protein product [Mus musculus]
gi|62130853|gb|AAX68444.1| nucleic acid binding protein 1 [Mus musculus]
gi|63146327|gb|AAH95967.1| Obfc2a protein [Mus musculus]
gi|74147618|dbj|BAE38689.1| unnamed protein product [Mus musculus]
gi|74186804|dbj|BAE43243.1| unnamed protein product [Mus musculus]
gi|74198439|dbj|BAE39703.1| unnamed protein product [Mus musculus]
gi|124298038|gb|AAI31924.1| Oligonucleotide/oligosaccharide-binding fold containing 2A [Mus
musculus]
gi|124376468|gb|AAI32533.1| Oligonucleotide/oligosaccharide-binding fold containing 2A [Mus
musculus]
gi|148664436|gb|EDK96852.1| RIKEN cDNA 5830411E10, isoform CRA_c [Mus musculus]
Length = 198
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 78/110 (70%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+
Sbjct: 9 LFIKDIKAGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADRTGSITISVWDEIGGLIQT 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 118
>gi|260827587|ref|XP_002608746.1| hypothetical protein BRAFLDRAFT_278435 [Branchiostoma floridae]
gi|229294098|gb|EEN64756.1| hypothetical protein BRAFLDRAFT_278435 [Branchiostoma floridae]
Length = 120
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 76/108 (70%)
Query: 34 YIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPG 93
YIKD+ G+KN+N IVLDI K+ EVR+ KVAD T IN+S+WDE G LL G
Sbjct: 8 YIKDIKPGLKNLNAIFIVLDIGRPTQTKDGHEVRSCKVADKTGSINISVWDEVGELLQSG 67
Query: 94 DIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
DI++L+K YA +W+ CLTLY+ + G + KIGEFCMVF+E +MS P P
Sbjct: 68 DIIKLSKGYASVWKGCLTLYTGRVGDLRKIGEFCMVFSEAPNMSEPNP 115
>gi|348580938|ref|XP_003476235.1| PREDICTED: SOSS complex subunit B1-like [Cavia porcellus]
Length = 211
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPV-NAPQS 150
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P AP
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNK 123
Query: 151 ANGN 154
A N
Sbjct: 124 AGQN 127
>gi|62079159|ref|NP_001014238.1| SOSS complex subunit B2 [Rattus norvegicus]
gi|81882837|sp|Q5FVP2.1|SOSB2_RAT RecName: Full=SOSS complex subunit B2; AltName: Full=Nucleic
acid-binding protein 1; AltName:
Full=Oligonucleotide/oligosaccharide-binding
fold-containing protein 2A; AltName: Full=Sensor of
single-strand DNA complex subunit B2; AltName:
Full=Sensor of ssDNA subunit B2; Short=SOSS-B2; AltName:
Full=Single-stranded DNA-binding protein 2
gi|58477142|gb|AAH89852.1| Oligonucleotide/oligosaccharide-binding fold containing 2A [Rattus
norvegicus]
gi|149046195|gb|EDL99088.1| similar to 5830411E10Rik protein, isoform CRA_b [Rattus norvegicus]
Length = 198
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 78/110 (70%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+
Sbjct: 9 LFIKDIKAGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADRTGSITISVWDEIGGLIQT 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 118
>gi|354500579|ref|XP_003512376.1| PREDICTED: SOSS complex subunit B2-like [Cricetulus griseus]
gi|344247302|gb|EGW03406.1| SOSS complex subunit B2 [Cricetulus griseus]
Length = 198
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 78/110 (70%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+
Sbjct: 9 LFIKDIKAGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADRTGSITISVWDEIGGLIQT 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 118
>gi|338715623|ref|XP_001917778.2| PREDICTED: SOSS complex subunit B2-like [Equus caballus]
Length = 261
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 77/109 (70%)
Query: 34 YIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPG 93
+IKD+ G+KN+NV IVL+ K+ EVR+ KVAD T I +S+WDE G L+ PG
Sbjct: 73 FIKDIKPGLKNLNVVFIVLETGRVTKPKDGHEVRSCKVADKTGSITISVWDEIGGLIQPG 132
Query: 94 DIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
DI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 133 DIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 181
>gi|56118324|ref|NP_001007990.1| SOSS complex subunit B1 [Xenopus (Silurana) tropicalis]
gi|82181438|sp|Q66K94.1|SOSB1_XENTR RecName: Full=SOSS complex subunit B1; AltName: Full=Nucleic
acid-binding protein 2; AltName:
Full=Oligonucleotide/oligosaccharide-binding
fold-containing protein 2B; AltName: Full=Sensor of
single-strand DNA complex subunit B1; AltName:
Full=Sensor of ssDNA subunit B1; Short=SOSS-B1; AltName:
Full=Single-stranded DNA-binding protein 1
gi|51513419|gb|AAH80502.1| MGC89998 protein [Xenopus (Silurana) tropicalis]
gi|89269008|emb|CAJ81599.1| novel protein containing OB-fold nucleic acid binding domain
[Xenopus (Silurana) tropicalis]
Length = 203
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 86/141 (60%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN++V IVL+ K+ EVRT KVAD T IN+S+WD+ G +
Sbjct: 4 ETFVKDVKPGLKNLSVLFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDLGNFIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSA 151
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P Q+
Sbjct: 64 PGDIIRLTKGYASLFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYIAQQSQNK 123
Query: 152 NGNSNPGNMNNSGNNKGNMRP 172
+ G NS N+ P
Sbjct: 124 QAQAESGTGTNSHNSSSPAPP 144
>gi|403300239|ref|XP_003940858.1| PREDICTED: SOSS complex subunit B2 [Saimiri boliviensis
boliviensis]
Length = 204
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 78/107 (72%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++I+D+ G+KN++V IVL+I K+ EVR+ KVAD T I +S+WDE G+L+ P
Sbjct: 9 IFIRDIKPGLKNLSVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGSLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEP 115
>gi|390467786|ref|XP_003733825.1| PREDICTED: SOSS complex subunit B1 isoform 2 [Callithrix jacchus]
Length = 227
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 20 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 79
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPV-NAPQS 150
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P AP
Sbjct: 80 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNK 139
Query: 151 ANGN-SNP 157
A N SNP
Sbjct: 140 AVQNDSNP 147
>gi|348605244|ref|NP_001231748.1| SOSS complex subunit B1 isoform 2 [Rattus norvegicus]
gi|123786332|sp|Q3SWT1.1|SOSB1_RAT RecName: Full=SOSS complex subunit B1; AltName: Full=Nucleic
acid-binding protein 2; AltName:
Full=Oligonucleotide/oligosaccharide-binding
fold-containing protein 2B; AltName: Full=Sensor of
single-strand DNA complex subunit B1; AltName:
Full=Sensor of ssDNA subunit B1; Short=SOSS-B1; AltName:
Full=Single-stranded DNA-binding protein 1
gi|74356436|gb|AAI04711.1| Oligonucleotide/oligosaccharide-binding fold containing 2B [Rattus
norvegicus]
gi|149029690|gb|EDL84861.1| oligonucleotide/oligosaccharide-binding fold containing 2B [Rattus
norvegicus]
Length = 211
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 83/121 (68%), Gaps = 2/121 (1%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSA 151
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P N Q++
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEY--NTQQAS 121
Query: 152 N 152
N
Sbjct: 122 N 122
>gi|348605242|ref|NP_001030111.2| SOSS complex subunit B1 isoform 1 [Rattus norvegicus]
Length = 243
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 83/121 (68%), Gaps = 2/121 (1%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 36 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 95
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSA 151
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P N Q++
Sbjct: 96 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEY--NTQQAS 153
Query: 152 N 152
N
Sbjct: 154 N 154
>gi|13129048|ref|NP_076973.1| SOSS complex subunit B1 [Homo sapiens]
gi|426373027|ref|XP_004053414.1| PREDICTED: SOSS complex subunit B1 isoform 1 [Gorilla gorilla
gorilla]
gi|426373029|ref|XP_004053415.1| PREDICTED: SOSS complex subunit B1 isoform 2 [Gorilla gorilla
gorilla]
gi|74761196|sp|Q9BQ15.1|SOSB1_HUMAN RecName: Full=SOSS complex subunit B1; AltName: Full=Nucleic
acid-binding protein 2; AltName:
Full=Oligonucleotide/oligosaccharide-binding
fold-containing protein 2B; AltName: Full=Sensor of
single-strand DNA complex subunit B1; AltName:
Full=Sensor of ssDNA subunit B1; Short=SOSS-B1; AltName:
Full=Single-stranded DNA-binding protein 1; Short=hSSB1
gi|12654499|gb|AAH01079.1| Oligonucleotide/oligosaccharide-binding fold containing 2B [Homo
sapiens]
gi|13544080|gb|AAH06171.1| OBFC2B protein [Homo sapiens]
gi|119617319|gb|EAW96913.1| oligonucleotide/oligosaccharide-binding fold containing 2B, isoform
CRA_b [Homo sapiens]
gi|119617321|gb|EAW96915.1| oligonucleotide/oligosaccharide-binding fold containing 2B, isoform
CRA_b [Homo sapiens]
gi|312151916|gb|ADQ32470.1| oligonucleotide/oligosaccharide-binding fold containing 2B
[synthetic construct]
gi|410228202|gb|JAA11320.1| oligonucleotide/oligosaccharide-binding fold containing 2B [Pan
troglodytes]
gi|410246832|gb|JAA11383.1| oligonucleotide/oligosaccharide-binding fold containing 2B [Pan
troglodytes]
gi|410246834|gb|JAA11384.1| oligonucleotide/oligosaccharide-binding fold containing 2B [Pan
troglodytes]
gi|410246836|gb|JAA11385.1| oligonucleotide/oligosaccharide-binding fold containing 2B [Pan
troglodytes]
gi|410290744|gb|JAA23972.1| oligonucleotide/oligosaccharide-binding fold containing 2B [Pan
troglodytes]
gi|410331267|gb|JAA34580.1| oligonucleotide/oligosaccharide-binding fold containing 2B [Pan
troglodytes]
Length = 211
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPV-NAPQS 150
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P AP
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNK 123
Query: 151 ANGN-SNP 157
A N SNP
Sbjct: 124 AVQNDSNP 131
>gi|73968353|ref|XP_531632.2| PREDICTED: SOSS complex subunit B1 [Canis lupus familiaris]
Length = 211
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 90/150 (60%), Gaps = 16/150 (10%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVN----- 146
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSAQQAPNK 123
Query: 147 ---------APQSANGNS--NPGNMNNSGN 165
APQ A G +P + N +GN
Sbjct: 124 TVQNDSSPTAPQPATGPPAVSPASENQNGN 153
>gi|119617320|gb|EAW96914.1| oligonucleotide/oligosaccharide-binding fold containing 2B, isoform
CRA_c [Homo sapiens]
Length = 227
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 20 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 79
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPV-NAPQS 150
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P AP
Sbjct: 80 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNK 139
Query: 151 ANGN-SNP 157
A N SNP
Sbjct: 140 AVQNDSNP 147
>gi|119617318|gb|EAW96912.1| oligonucleotide/oligosaccharide-binding fold containing 2B, isoform
CRA_a [Homo sapiens]
Length = 236
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 29 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 88
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPV-NAPQS 150
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P AP
Sbjct: 89 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNK 148
Query: 151 ANGN-SNP 157
A N SNP
Sbjct: 149 AVQNDSNP 156
>gi|432930406|ref|XP_004081458.1| PREDICTED: SOSS complex subunit B2-like isoform 1 [Oryzias latipes]
Length = 219
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 98/168 (58%), Gaps = 22/168 (13%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
+KD+ G KN+N+ IVL+I K+ EVR+ KVAD + I +S+WDE G+L+ PGD
Sbjct: 12 LKDVKPGSKNLNIVFIVLEIGRVTKTKDGHEVRSCKVADKSGSIAISVWDELGSLIQPGD 71
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSANGN 154
I++LT+ YA IW+ CLTLY+ + G ++KIGEFCMV++E + S P P + A Q
Sbjct: 72 IIKLTRGYASIWKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEVLAQANQ----- 126
Query: 155 SNPGNMNNSG----NNKGNMRPN--------PIDRDVNRYSNNPDKGS 190
N SG N +GN PN P + + ++NNP G+
Sbjct: 127 -----QNKSGKPDQNQRGNSPPNQNSGTPAPPGNGALPPFANNPPPGT 169
>gi|351703624|gb|EHB06543.1| SOSS complex subunit B1 [Heterocephalus glaber]
Length = 211
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 88/137 (64%), Gaps = 3/137 (2%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPV-NAPQS 150
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P AP
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNK 123
Query: 151 A--NGNSNPGNMNNSGN 165
A N +S P +G+
Sbjct: 124 AVQNDSSPPATQAATGS 140
>gi|28076937|ref|NP_081533.1| SOSS complex subunit B1 [Mus musculus]
gi|81901571|sp|Q8R2Y9.1|SOSB1_MOUSE RecName: Full=SOSS complex subunit B1; AltName: Full=Nucleic
acid-binding protein 2; AltName:
Full=Oligonucleotide/oligosaccharide-binding
fold-containing protein 2B; AltName: Full=Sensor of
single-strand DNA complex subunit B1; AltName:
Full=Sensor of ssDNA subunit B1; Short=SOSS-B1; AltName:
Full=Single-stranded DNA-binding protein 1
gi|20071256|gb|AAH26942.1| Oligonucleotide/oligosaccharide-binding fold containing 2B [Mus
musculus]
gi|73808796|gb|AAZ85395.1| nucleic acid binding protein 2 [Mus musculus]
gi|148692618|gb|EDL24565.1| oligonucleotide/oligosaccharide-binding fold containing 2B [Mus
musculus]
Length = 212
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 113
>gi|344256406|gb|EGW12510.1| SOSS complex subunit B1 [Cricetulus griseus]
Length = 211
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 113
>gi|355564354|gb|EHH20854.1| Sensor of single-strand DNA complex subunit B1 [Macaca mulatta]
gi|355786210|gb|EHH66393.1| Sensor of single-strand DNA complex subunit B1 [Macaca
fascicularis]
gi|380786131|gb|AFE64941.1| SOSS complex subunit B1 [Macaca mulatta]
gi|380786133|gb|AFE64942.1| SOSS complex subunit B1 [Macaca mulatta]
gi|383413511|gb|AFH29969.1| SOSS complex subunit B1 [Macaca mulatta]
Length = 211
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 113
>gi|149756577|ref|XP_001504877.1| PREDICTED: SOSS complex subunit B1-like [Equus caballus]
Length = 211
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 113
>gi|296212013|ref|XP_002752651.1| PREDICTED: SOSS complex subunit B1 isoform 1 [Callithrix jacchus]
Length = 255
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 48 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 107
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPV-NAPQS 150
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P AP
Sbjct: 108 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNK 167
Query: 151 ANGN-SNP 157
A N SNP
Sbjct: 168 AVQNDSNP 175
>gi|397509098|ref|XP_003824973.1| PREDICTED: SOSS complex subunit B1 [Pan paniscus]
Length = 254
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 47 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 106
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPV-NAPQS 150
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P AP
Sbjct: 107 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNK 166
Query: 151 ANGN-SNP 157
A N SNP
Sbjct: 167 AVQNDSNP 174
>gi|194037542|ref|XP_001929324.1| PREDICTED: SOSS complex subunit B1 isoform 1 [Sus scrofa]
Length = 211
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 113
>gi|431914013|gb|ELK15275.1| SOSS complex subunit B1 [Pteropus alecto]
Length = 210
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 113
>gi|155372027|ref|NP_001094621.1| SOSS complex subunit B1 [Bos taurus]
gi|189029264|sp|A6QLK2.1|SOSB1_BOVIN RecName: Full=SOSS complex subunit B1; AltName: Full=Nucleic
acid-binding protein 2; AltName:
Full=Oligonucleotide/oligosaccharide-binding
fold-containing protein 2B; AltName: Full=Sensor of
single-strand DNA complex subunit B1; AltName:
Full=Sensor of ssDNA subunit B1; Short=SOSS-B1; AltName:
Full=Single-stranded DNA-binding protein 1
gi|151554718|gb|AAI47995.1| OBFC2B protein [Bos taurus]
gi|296487431|tpg|DAA29544.1| TPA: SOSS complex subunit B1 [Bos taurus]
Length = 211
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 113
>gi|402886442|ref|XP_003906638.1| PREDICTED: SOSS complex subunit B1 [Papio anubis]
Length = 255
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 48 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 107
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 108 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 157
>gi|403296979|ref|XP_003939370.1| PREDICTED: SOSS complex subunit B1 [Saimiri boliviensis
boliviensis]
Length = 255
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 48 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 107
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPV-NAPQS 150
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P AP
Sbjct: 108 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNK 167
Query: 151 ANGN-SNP 157
A N SNP
Sbjct: 168 AVQNDSNP 175
>gi|344266211|ref|XP_003405174.1| PREDICTED: SOSS complex subunit B1-like [Loxodonta africana]
Length = 211
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 113
>gi|301760502|ref|XP_002916029.1| PREDICTED: SOSS complex subunit B1-like [Ailuropoda melanoleuca]
gi|281353262|gb|EFB28846.1| hypothetical protein PANDA_004083 [Ailuropoda melanoleuca]
Length = 211
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 113
>gi|410964787|ref|XP_003988934.1| PREDICTED: SOSS complex subunit B1 [Felis catus]
Length = 211
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 113
>gi|348511519|ref|XP_003443291.1| PREDICTED: SOSS complex subunit B2-like [Oreochromis niloticus]
Length = 214
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 88/143 (61%), Gaps = 14/143 (9%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
IKD+ G KN+N+ IVL+I K+ EVR+ KVAD + I +S+WDE G+L+ PGD
Sbjct: 12 IKDVKPGSKNLNIVFIVLEIGRVTKTKDGHEVRSCKVADKSGSIAISVWDELGSLIQPGD 71
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSANGN 154
I++LT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P L A Q
Sbjct: 72 IIKLTRGYASMWKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPELLAQANQ----- 126
Query: 155 SNPGNMNNSG----NNKGNMRPN 173
N SG N +GN PN
Sbjct: 127 -----QNKSGKPDQNQRGNSPPN 144
>gi|432930408|ref|XP_004081459.1| PREDICTED: SOSS complex subunit B2-like isoform 2 [Oryzias latipes]
Length = 213
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 98/156 (62%), Gaps = 4/156 (2%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
+KD+ G KN+N+ IVL+I K+ EVR+ KVAD + I +S+WDE G+L+ PGD
Sbjct: 12 LKDVKPGSKNLNIVFIVLEIGRVTKTKDGHEVRSCKVADKSGSIAISVWDELGSLIQPGD 71
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSANGN 154
I++LT+ YA IW+ CLTLY+ + G ++KIGEFCMV++E + S P P + A Q N +
Sbjct: 72 IIKLTRGYASIWKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEVLAQANQQ-NKS 130
Query: 155 SNPGNMNNSGNNKGNMRPNPIDRDVNRYSNNPDKGS 190
P + N GN+ N N + + ++NNP G+
Sbjct: 131 GKP-DQNQRGNSPPNQ--NSGNGALPPFANNPPPGT 163
>gi|426221252|ref|XP_004004824.1| PREDICTED: SOSS complex subunit B2 isoform 1 [Ovis aries]
Length = 204
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 80/111 (72%), Gaps = 4/111 (3%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVT-LKENREVRTLKVADSTACINLSLWDEPGALLH 91
++IKD+ G+KN+NV IVL RVT K+ EVR+ KVAD T I +S+WDE G L+
Sbjct: 9 LFIKDIKPGLKNLNVVFIVLG---RVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQ 65
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
PGDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 66 PGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSELPNFSEPNPD 116
>gi|395835198|ref|XP_003790569.1| PREDICTED: SOSS complex subunit B1 [Otolemur garnettii]
Length = 211
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 113
>gi|354488221|ref|XP_003506269.1| PREDICTED: SOSS complex subunit B1-like [Cricetulus griseus]
Length = 276
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 69 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 128
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 129 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 178
>gi|327264381|ref|XP_003216992.1| PREDICTED: SOSS complex subunit B1-like [Anolis carolinensis]
Length = 213
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 83/124 (66%), Gaps = 2/124 (1%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ +KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETLVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSA 151
PGDI+RLTK YA +++ CLTLYS + G ++K+GEFCMV++E + S P P A QS
Sbjct: 64 PGDIIRLTKGYATVFKGCLTLYSGRGGDLQKVGEFCMVYSEVPNFSEPNPEYV--AQQSQ 121
Query: 152 NGNS 155
N N+
Sbjct: 122 NKNT 125
>gi|345311186|ref|XP_001520148.2| PREDICTED: SOSS complex subunit B2-like, partial [Ornithorhynchus
anatinus]
Length = 167
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 81/115 (70%), Gaps = 2/115 (1%)
Query: 27 KKEAMD--VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWD 84
KK A D ++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WD
Sbjct: 2 KKGAGDPCLFIKDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADRTGSITISVWD 61
Query: 85 EPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
E G L+ GDI+RLT+ YA +W+ CLTLY+ ++GL+ +IGEFCMV++E + S P
Sbjct: 62 EVGGLIQTGDIIRLTRGYASMWKGCLTLYTGRAGLLHRIGEFCMVYSEVPNFSEP 116
>gi|405947306|gb|EKC17808.1| SOSS complex subunit B2 [Crassostrea gigas]
gi|405950731|gb|EKC18698.1| SOSS complex subunit B2 [Crassostrea gigas]
Length = 128
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 75/107 (70%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
IKD+ G KN+N+ IVLDI ++ +VR++KVAD T IN+S+WDE G LL GD
Sbjct: 8 IKDIKPGQKNINIMFIVLDIGAPTRTRDGHDVRSVKVADKTGSINISIWDETGDLLQTGD 67
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
I RLTK Y+ +W++CLTLY+ KSG + K+GEFCM F E +MS P P
Sbjct: 68 ICRLTKGYSNVWKSCLTLYTGKSGEVIKVGEFCMQFTETPNMSEPKP 114
>gi|387018776|gb|AFJ51506.1| SOSS complex subunit B1-like [Crotalus adamanteus]
Length = 210
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 81/121 (66%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ +KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETLVKDIKPGMKNLNLIFIVLETGRVTKTKDGHEVRTCKVADRTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSA 151
PGDI+RLTK Y+ I++ CLTLY+ + G ++K+GEFCMV++E + S P P+ Q+
Sbjct: 64 PGDIIRLTKGYSSIFKGCLTLYTGRGGDLQKVGEFCMVYSEVPNFSEPNPDYVAQQSQNK 123
Query: 152 N 152
N
Sbjct: 124 N 124
>gi|442759025|gb|JAA71671.1| Putative secreted protein [Ixodes ricinus]
Length = 233
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
I+DL G+KN+++ IVL+I KE EVRT KVAD + IN+S+WDEPG + GD
Sbjct: 36 IRDLKPGMKNLSIIFIVLEIGRPNMTKEGHEVRTCKVADRSGSINVSVWDEPGTCIQQGD 95
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSANGN 154
I +LTK YA +W+ CLTLY+ K G I+K GEFC+ F+E MS +P A A
Sbjct: 96 ICKLTKGYASLWKGCLTLYTGKGGEIQKFGEFCLPFSETPFMSETQSRIPAAAAGQAECQ 155
Query: 155 SNPGNMNN--SGNNKGNMRPNPIDR 177
P + + G + + P+ I R
Sbjct: 156 HGPEAIAHLTGGGRRSDGPPSAIAR 180
>gi|354475913|ref|XP_003500171.1| PREDICTED: SOSS complex subunit B2-like [Cricetulus griseus]
Length = 206
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 77/110 (70%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KNVNV IVL + +K+ EVR+ KVAD T I +S+WDE G L+
Sbjct: 9 LFIKDIKAGLKNVNVVFIVLQLERVTRIKDGHEVRSYKVADETGSITISVWDEIGELIQT 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CL LY+ + G ++KIGE+CMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLILYTGRDGELQKIGEYCMVYSEVPNFSEPNPD 118
>gi|355708523|gb|AES03294.1| oligonucleotide/oligosaccharide-binding fold containing 2B [Mustela
putorius furo]
Length = 143
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 83/121 (68%), Gaps = 2/121 (1%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 8 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 67
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSA 151
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P +A Q+
Sbjct: 68 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEY--SAQQAP 125
Query: 152 N 152
N
Sbjct: 126 N 126
>gi|426226783|ref|XP_004007515.1| PREDICTED: SOSS complex subunit B1 [Ovis aries]
Length = 193
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 113
>gi|395513552|ref|XP_003760987.1| PREDICTED: SOSS complex subunit B1-like [Sarcophilus harrisii]
Length = 206
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 5/148 (3%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL-----PVN 146
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSAQQQPSK 123
Query: 147 APQSANGNSNPGNMNNSGNNKGNMRPNP 174
Q+ + ++N + +RP P
Sbjct: 124 TVQNDSSSANAQSPAGPPAGPPALRPVP 151
>gi|148237450|ref|NP_001086717.1| SOSS complex subunit B1-A [Xenopus laevis]
gi|82182565|sp|Q6DE02.1|SOB1A_XENLA RecName: Full=SOSS complex subunit B1-A; AltName: Full=Nucleic
acid-binding protein 2-A; AltName:
Full=Oligonucleotide/oligosaccharide-binding
fold-containing protein 2B-A; AltName: Full=Sensor of
single-strand DNA complex subunit B1-A; AltName:
Full=Sensor of ssDNA subunit B1-A; Short=SOSS-B1-A;
AltName: Full=Single-stranded DNA-binding protein 1-A
gi|50418299|gb|AAH77346.1| MGC81094 protein [Xenopus laevis]
Length = 203
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 77/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN++V IVL+ K+ EVRT KVAD T IN+S+WDE G +
Sbjct: 4 ETFVKDVKPGLKNLSVLFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDELGNFIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RL+K YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLSKGYASLFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 113
>gi|346472429|gb|AEO36059.1| hypothetical protein [Amblyomma maculatum]
Length = 218
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 75/115 (65%)
Query: 29 EAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGA 88
E I+DL G+KN+++ IVLDI KE EVRT +VAD + IN+S+WDEPG
Sbjct: 10 EMEPTTIRDLKPGMKNLSIVFIVLDIGRPNMTKEGHEVRTCRVADRSGSINVSVWDEPGT 69
Query: 89 LLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
+ GDI +LTK YA +W+ CLTLY+ K G I+KIGEFC+ F+E MS P P
Sbjct: 70 CIQQGDICKLTKGYASLWKGCLTLYTGKGGDIQKIGEFCLPFSETPFMSEPNPEF 124
>gi|427792435|gb|JAA61669.1| Hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 232
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 74/109 (67%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
I+DL G+KN+++ IVL+I KE EVRT +VAD + IN+S+WDEPG + GD
Sbjct: 31 IRDLKPGMKNLSIIFIVLEIGRPNMTKEGHEVRTCRVADRSGSINVSVWDEPGTCIQQGD 90
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
I +LTK YA +W+ CLTLY+ K G I+KIGEFC+ F+E MS P P
Sbjct: 91 ICKLTKGYASLWKGCLTLYTGKGGDIQKIGEFCLPFSETPFMSEPNPEF 139
>gi|291243624|ref|XP_002741698.1| PREDICTED: oligonucleotide/oligosaccharide-binding fold containing
2B-like [Saccoglossus kowalevskii]
Length = 222
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 77/116 (66%)
Query: 28 KEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPG 87
+E +IKD+ KN+NV I+LDI T K+ EVR+ KVAD T IN+S+WD G
Sbjct: 4 QEPSYTFIKDIRPSQKNLNVIFIILDIGRPTTTKDGHEVRSCKVADKTGSINISIWDAVG 63
Query: 88 ALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
L+ GDI+RLT+ YA +W+ LTLY+ + G ++++GEFCMVF+E +MS P P
Sbjct: 64 DLIQSGDIIRLTRGYASMWKGGLTLYTGRGGELQRMGEFCMVFSEFPNMSDPNPEF 119
>gi|444518232|gb|ELV12043.1| Zinc transporter ZIP5 [Tupaia chinensis]
Length = 557
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 84/136 (61%), Gaps = 15/136 (11%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN--------- 142
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNK 123
Query: 143 ------LPVNAPQSAN 152
LPV PQ+
Sbjct: 124 AVTLARLPVYPPQAGT 139
>gi|71834642|ref|NP_001025423.1| SOSS complex subunit B1 [Danio rerio]
gi|66910464|gb|AAH97147.1| Zgc:114087 [Danio rerio]
Length = 216
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 76/109 (69%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
IKDL G+KN+N+ IVL+ K+ EVR+ KVAD T I +S+WDE G+L+ GD
Sbjct: 12 IKDLKAGLKNINLVFIVLETGRVSKTKDGHEVRSCKVADRTGSITISVWDEVGSLIQTGD 71
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
I+RLT+ YA +++ CLTLY ++G ++KIGEFCM+F+E + S P P +
Sbjct: 72 IIRLTRGYASLFKGCLTLYIGRTGDLQKIGEFCMIFSETPNFSEPNPEV 120
>gi|156406656|ref|XP_001641161.1| predicted protein [Nematostella vectensis]
gi|156228298|gb|EDO49098.1| predicted protein [Nematostella vectensis]
Length = 227
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 74/105 (70%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
I+D+ KN++ IVL+I K+ VR+ +VAD TA IN+S+WDE G L PGD
Sbjct: 13 IRDVRASQKNLHCVFIVLEIGKPNKTKDGHNVRSCRVADKTASINVSIWDEFGEFLQPGD 72
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
I+RLT+ YA +W+ CLTLY+ ++G +EK+G+FCMVF+E +MS P
Sbjct: 73 ILRLTRGYAAVWKGCLTLYTGRNGHLEKLGDFCMVFSEIPNMSEP 117
>gi|196001109|ref|XP_002110422.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190586373|gb|EDV26426.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 220
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 86/143 (60%), Gaps = 6/143 (4%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ I+D+ G+KN+ + CIVLD+ KE EVRT +VAD + IN+S+WDE G L+
Sbjct: 5 ISIRDIKHGMKNIVLICIVLDVGKPTKTKEGHEVRTCRVADKSGSINISVWDEWGQLIQG 64
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN------LPVN 146
GDI+++ + Y W+ LT+Y+ + G IE++G+FCMV++EN ++S I LP N
Sbjct: 65 GDIIKICRGYTAYWKGFLTIYTGRGGYIERMGDFCMVYSENPNISETITENPQQQKLPSN 124
Query: 147 APQSANGNSNPGNMNNSGNNKGN 169
A Q + +S P + N N
Sbjct: 125 ADQQHSQSSAPQQARTNSNTSSN 147
>gi|351706573|gb|EHB09492.1| SOSS complex subunit B2 [Heterocephalus glaber]
Length = 204
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 75/112 (66%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALL 90
+ V+IKD+ G KN+NV IVL+I K+ EVR+ KVAD I +S+WDE G L+
Sbjct: 7 LPVFIKDIKPGQKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKRGSITISVWDEIGGLI 66
Query: 91 HPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
PGD + LT+ YA +W+ CLTL + + G ++KIGEFCM+++E + S P P+
Sbjct: 67 EPGDTIPLTRGYASMWKGCLTLDTGRGGELQKIGEFCMIYSEVPNFSEPNPD 118
>gi|443712017|gb|ELU05518.1| hypothetical protein CAPTEDRAFT_20740 [Capitella teleta]
Length = 229
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 90/147 (61%), Gaps = 7/147 (4%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ IKDL KNVN+ IVL+I + +VR++KVAD T IN+SLW + G +
Sbjct: 8 LSIKDLKPNQKNVNLVFIVLEIGKPNHTQRGMDVRSVKVADKTGSINISLWGDLGVEVQT 67
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSAN 152
GDI RL++ Y +W+ CLTLY+SK+G I KIGEFCMVF+E +MS P P + Q +
Sbjct: 68 GDICRLSRGYTNMWKGCLTLYTSKTGEIIKIGEFCMVFSETPNMSEPNPE---SIKQLQD 124
Query: 153 GNSNPGNMNNSGNNKGNMRPNPIDRDV 179
NP + N+GN G+ R +P D V
Sbjct: 125 SGQNP--LGNNGN--GHQRRSPTDGPV 147
>gi|198436705|ref|XP_002130978.1| PREDICTED: similar to oligonucleotide/oligosaccharide-binding fold
containing 2B [Ciona intestinalis]
Length = 173
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 71/104 (68%)
Query: 34 YIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPG 93
Y+KDL+ KN+ + IVL + K+ EVR+ KVAD T +NLS+W + G + PG
Sbjct: 16 YVKDLYPQAKNLQMKVIVLHVGNSYKTKDGNEVRSCKVADKTGSVNLSIWGDYGNHIQPG 75
Query: 94 DIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
DI+ L++CYA ++++CLTLY K G + K+GEFCMVFNE D+S
Sbjct: 76 DILSLSRCYAVLFKSCLTLYVGKFGSLTKVGEFCMVFNEVPDIS 119
>gi|10439359|dbj|BAB15491.1| unnamed protein product [Homo sapiens]
gi|119631241|gb|EAX10836.1| oligonucleotide/oligosaccharide-binding fold containing 2A, isoform
CRA_b [Homo sapiens]
Length = 134
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++I+D+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 IFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMV 129
GDI+RLT+ YA +W+ CLTLY+ + G ++KIG+ V
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGDLGAV 105
>gi|351705494|gb|EHB08413.1| SOSS complex subunit B2 [Heterocephalus glaber]
Length = 235
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 47 VTCIVLDIS---PRVT-LKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCY 102
V C L S RVT K+ EVR+ KVAD T I +S+WDE G L+ PGDI+RLT+ Y
Sbjct: 50 VHCTSLGFSFCIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLVQPGDIIRLTRGY 109
Query: 103 AQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSANGNSNPGNMNN 162
A +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+ + A+ +MN
Sbjct: 110 ASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYRGQPNKGAHSEQKTNSMN- 168
Query: 163 SGNNKGNMRPNPIDRDVN 180
+N G P+ V
Sbjct: 169 --SNTGTGTFGPVGNGVQ 184
>gi|410046585|ref|XP_001153310.3| PREDICTED: SOSS complex subunit B1 [Pan troglodytes]
Length = 241
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 47 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 106
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGE----FCMVFNENLD--MSIPIPNLPV 145
PGDI+RLTK YA +++ CLTLY+ + G ++KIGE F + E ++ PNL +
Sbjct: 107 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGETRSAFLTGYGEGKASCKTLLTPNLCL 166
Query: 146 NAPQSANGNSNPGNMNNSG 164
P G+S N N +G
Sbjct: 167 -GPWDRKGHSASENQNGNG 184
>gi|74195597|dbj|BAE39608.1| unnamed protein product [Mus musculus]
Length = 177
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
Query: 49 CIVLDISPRVT-LKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIWR 107
C+ + RVT K+ EVR+ KVAD T I +S+WDE G L+ GDI+RLT+ YA +W+
Sbjct: 3 CLGRGLRGRVTKTKDGHEVRSCKVADRTGSITISVWDEIGGLIQTGDIIRLTRGYASMWK 62
Query: 108 NCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 63 GCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 97
>gi|321459594|gb|EFX70646.1| hypothetical protein DAPPUDRAFT_7774 [Daphnia pulex]
Length = 101
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
Query: 35 IKDLHVGIKNVNVTCIVLDIS-PRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPG 93
++DL +KN+N+ IVL+I P VT K+ EVR+ KVAD T INLS+WDEPG LL PG
Sbjct: 11 VRDLKPSMKNLNMIFIVLEIGRPNVT-KDGHEVRSCKVADKTGSINLSVWDEPGLLLQPG 69
Query: 94 DIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGE 125
DI+R++K Y +W+N LTLY K G I+KIGE
Sbjct: 70 DILRISKAYVSVWKNSLTLYMGKGGDIQKIGE 101
>gi|340368934|ref|XP_003383005.1| PREDICTED: SOSS complex subunit B1-like [Amphimedon queenslandica]
Length = 225
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 8/136 (5%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
I+DL G+KNV+ IV+D + K+ VR +VAD T I S+W+ G + GD
Sbjct: 10 IEDLRAGMKNVHCIFIVIDRGTQQKTKDGSTVRKCRVADKTGSIIFSVWNREGEAISTGD 69
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP--------NLPVN 146
I+RLTK Y+ +W+ L LY K GL+E++G+F MVF+E DMS +P P +
Sbjct: 70 IIRLTKGYSSLWKGNLVLYCGKYGLVERLGDFTMVFSETPDMSTYVPPQAEGLTQQSPHS 129
Query: 147 APQSANGNSNPGNMNN 162
P+ ++ ++ P ++ N
Sbjct: 130 MPEMSSSSAQPPSIEN 145
>gi|20071811|gb|AAH27371.1| Obfc2a protein [Mus musculus]
Length = 169
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Query: 57 RVT-LKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLYSS 115
RVT K+ EVR+ KVAD T I +S+WDE G L+ GDI+RLT+ YA +W+ CLTLY+
Sbjct: 3 RVTKTKDGHEVRSCKVADRTGSITISVWDEIGGLIQTGDIIRLTRGYASMWKGCLTLYTG 62
Query: 116 KSGLIEKIGEFCMVFNENLDMSIPIPN 142
+ G ++KIGEFCMV++E + S P P+
Sbjct: 63 RGGELQKIGEFCMVYSEVPNFSEPNPD 89
>gi|148664435|gb|EDK96851.1| RIKEN cDNA 5830411E10, isoform CRA_b [Mus musculus]
Length = 171
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Query: 57 RVT-LKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLYSS 115
RVT K+ EVR+ KVAD T I +S+WDE G L+ GDI+RLT+ YA +W+ CLTLY+
Sbjct: 5 RVTKTKDGHEVRSCKVADRTGSITISVWDEIGGLIQTGDIIRLTRGYASMWKGCLTLYTG 64
Query: 116 KSGLIEKIGEFCMVFNENLDMSIPIPN 142
+ G ++KIGEFCMV++E + S P P+
Sbjct: 65 RGGELQKIGEFCMVYSEVPNFSEPNPD 91
>gi|313220820|emb|CBY31659.1| unnamed protein product [Oikopleura dioica]
gi|313226086|emb|CBY21229.1| unnamed protein product [Oikopleura dioica]
Length = 167
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 71/106 (66%)
Query: 34 YIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPG 93
+IKDL + K N+TCI L ++ + + EVR + ++D T +NLS+W E G L+ G
Sbjct: 43 WIKDLKLTTKTANLTCICLGVTNAIRTTDGNEVRNIVISDKTGRVNLSMWGELGGLVREG 102
Query: 94 DIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
DI+++ + Y +++++ LTLY SK G I+++G+FC+ FN+ D+S P
Sbjct: 103 DILKIQRAYTKLFKDVLTLYISKQGSIQRVGDFCLQFNDKNDLSDP 148
>gi|351696112|gb|EHA99030.1| SOSS complex subunit B2 [Heterocephalus glaber]
Length = 180
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 58/82 (70%)
Query: 61 KENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLI 120
++ EVR+ VAD I +S+WDE G L+ PGDI+RL + YA +W+ CLTL++ + G +
Sbjct: 5 EDGHEVRSCTVADKRGSITISVWDEIGVLIEPGDIIRLIRGYASMWKGCLTLFTGREGEL 64
Query: 121 EKIGEFCMVFNENLDMSIPIPN 142
+KIGEFCMV++E + S P P+
Sbjct: 65 QKIGEFCMVYSEVPNFSEPNPD 86
>gi|390459938|ref|XP_003732391.1| PREDICTED: LOW QUALITY PROTEIN: SOSS complex subunit B1-like
[Callithrix jacchus]
Length = 212
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 67/107 (62%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALL 90
M+ ++KD+ ++++N+ IVL+ K+ V T +VAD T IN+S WD+ G L+
Sbjct: 3 METFVKDIKPRLRDLNLIFIVLETGQVTKTKDGHVVETCEVADKTGSINISGWDDVGNLI 62
Query: 91 HPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
PGDI+ LTK Y +++ CLTLY+ ++K GEFCM++ E D S
Sbjct: 63 QPGDIIWLTKEYTXVFKGCLTLYTGCKDNLQKTGEFCMIYTEVPDFS 109
>gi|449507602|ref|XP_002191186.2| PREDICTED: SOSS complex subunit B2 [Taeniopygia guttata]
Length = 203
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 53/85 (62%)
Query: 55 SPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLYS 114
+PR R R L T I + +WDE G L+ PGDI+RLTK YA +W+ CLTLY+
Sbjct: 24 APRAPDDSIRHNRPLPAPGLTGSITICVWDEIGGLIQPGDIIRLTKGYASLWKGCLTLYT 83
Query: 115 SKSGLIEKIGEFCMVFNENLDMSIP 139
+ G + KIGEFCMV++E + S P
Sbjct: 84 GRGGELHKIGEFCMVYSEVPNYSEP 108
>gi|449268748|gb|EMC79597.1| SOSS complex subunit B2, partial [Columba livia]
Length = 161
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 49/67 (73%)
Query: 73 DSTACINLSLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNE 132
D T I +S+WDE G L+ PGDI+RLTK YA +W+ CLTLY+ + G + KIGEFCMV++E
Sbjct: 1 DKTGSITISVWDEIGGLIQPGDIIRLTKGYASLWKGCLTLYTGRGGELHKIGEFCMVYSE 60
Query: 133 NLDMSIP 139
+ S P
Sbjct: 61 VPNFSEP 67
>gi|330795276|ref|XP_003285700.1| hypothetical protein DICPUDRAFT_76639 [Dictyostelium purpureum]
gi|325084331|gb|EGC37761.1| hypothetical protein DICPUDRAFT_76639 [Dictyostelium purpureum]
Length = 149
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 79/153 (51%), Gaps = 21/153 (13%)
Query: 31 MDVYIK--DLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGA 88
M +IK ++ KN+N IVLD KE + L VADS+A IN++LWD G
Sbjct: 1 MSTFIKVNEIKPYTKNINCVFIVLDKGLPTKKKEGTIFQVL-VADSSAAINMTLWDVIGE 59
Query: 89 LLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSI------PIPN 142
+ PGDI+RL Y+ I+ + L LY K+GLIEKIGEF F E ++S P PN
Sbjct: 60 QVQPGDILRLKGGYSNIYIDLLNLYVGKTGLIEKIGEFTFPFVEAPNLSATLWNVHPDPN 119
Query: 143 LPVNAPQSANGNSNPGNMNNSGNNKGNMRPNPI 175
P N + SNP M+PNP+
Sbjct: 120 NPKNMVATPKIKSNP------------MKPNPM 140
>gi|290991237|ref|XP_002678242.1| phosphoinositide-binding protein [Naegleria gruberi]
gi|284091853|gb|EFC45498.1| phosphoinositide-binding protein [Naegleria gruberi]
Length = 778
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
I DL + + ++TCIVLD + K+N+ + VAD TA I L+LW+ + GD
Sbjct: 238 IADLKPNMTDFSITCIVLDKQQTIKTKDNQFITYFVVADDTAYITLTLWNHKADYIVGGD 297
Query: 95 IVRLTKCYAQIW-RNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
I+R+ Q+W +NC+ L +S++ I ++GE+CMVFNE+ ++S
Sbjct: 298 IIRIIGAQTQLWQKNCINLTTSRNANISRVGEYCMVFNESKNIS 341
>gi|66815439|ref|XP_641736.1| OB fold-containing protein, nucleic acid binding [Dictyostelium
discoideum AX4]
gi|74856336|sp|Q54X41.1|SOSSB_DICDI RecName: Full=SOSS complex subunit B homolog
gi|60469773|gb|EAL67760.1| OB fold-containing protein, nucleic acid binding [Dictyostelium
discoideum AX4]
Length = 183
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 43 KNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCY 102
KN+N IVLD P KE + L VADSTA IN+++WD G + PGDI+RL Y
Sbjct: 14 KNINCVFIVLDKGPPTKKKEGTIYQVL-VADSTASINMTVWDALGEQIQPGDILRLKGGY 72
Query: 103 AQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
+ I+ L LY K+G+IEKIGEF F E ++S
Sbjct: 73 SNIYIELLNLYVGKTGIIEKIGEFTFPFVEAPNLS 107
>gi|281203891|gb|EFA78087.1| OB fold-containing protein [Polysphondylium pallidum PN500]
Length = 219
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
I D+ KN+N IVL+ P + K+ + L VAD +A IN++L+D G + PGD
Sbjct: 54 ILDIKPYAKNINTIFIVLEKMPPIKKKDLLLYQVL-VADGSASINMTLFDVYGEQVQPGD 112
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
I+RL YA I+ L LY KSG+IE+IGEF F EN ++S
Sbjct: 113 ILRLRGGYASIFHESLFLYVGKSGVIERIGEFTFTFVENPNLS 155
>gi|256076865|ref|XP_002574729.1| ob fold nucleic acid binding protein [Schistosoma mansoni]
gi|360044071|emb|CCD81618.1| putative ob fold nucleic acid binding protein [Schistosoma mansoni]
Length = 138
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 62/104 (59%)
Query: 34 YIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPG 93
++KDL +K V+ IVL++ P K+ EVRT KVAD T IN+S+W+E +L+ P
Sbjct: 10 FLKDLKPNMKRVSCVFIVLELGPITRTKDGNEVRTAKVADRTGTINISVWNENSSLIAPC 69
Query: 94 DIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
D+++L + + CL L + G + KIGEFC F E+ D S
Sbjct: 70 DVLQLVQGNTTVRGGCLNLNVGRYGQLMKIGEFCFPFVESPDFS 113
>gi|324506428|gb|ADY42745.1| SOSS complex subunit B1 [Ascaris suum]
Length = 213
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 63/103 (61%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
I L G+KN+NVT IV+D+ P ++ ++RT++VAD T I + +WD ++ G+
Sbjct: 12 IGQLVPGMKNLNVTFIVIDVGPSRRTQQGHDIRTVRVADPTGSILMCVWDTVAEVIKSGE 71
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
I RL Y +++ L L K+G + K+GEF M+F+E +MS
Sbjct: 72 IWRLRNGYTSVFKGALGLSCGKAGDLMKVGEFFMLFSELPNMS 114
>gi|320163462|gb|EFW40361.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 200
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
Query: 29 EAMDVYIK--DLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEP 86
+A V+IK DL +++V + CIVL+ K++ V + VAD++ + L++WD+
Sbjct: 2 DAAKVFIKIADLKPSMRSVRIRCIVLEKGESQRTKDDTLVTSCLVADASGSVRLTVWDDL 61
Query: 87 GALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
+ P DI+ +T Y +++ LT+Y+ K+ ++E++GEF M F+E +MS
Sbjct: 62 CLHIQPSDILHITNGYCSLFKGSLTVYTGKAAMVERVGEFTMSFSETPNMS 112
>gi|168033524|ref|XP_001769265.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679530|gb|EDQ65977.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 148
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 44 NVNVTCIVLDISPRVTLKENREVRTLK-VADSTACINLSLWDEPGALLHPGDIVRLTKCY 102
N+N+T IVL+ P + EN + ++ VAD+TA ++L LW PGDIVR+T
Sbjct: 10 NINLTFIVLEKGPLSRIGENGPLVSVALVADATAAVHLQLWGPECDAFQPGDIVRITNGV 69
Query: 103 AQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
+ L L + K G +EKIGEF MVF+EN++MS
Sbjct: 70 FSFHKTNLVLRAGKKGQLEKIGEFTMVFSENVNMS 104
>gi|428173889|gb|EKX42788.1| hypothetical protein GUITHDRAFT_111157 [Guillardia theta CCMP2712]
Length = 158
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 57/97 (58%)
Query: 41 GIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTK 100
G K +N IVL+ KE V + +AD+TA +N SL+D G L+ PGDI+RLT
Sbjct: 33 GDKIINTLFIVLEKVKTTGTKEGNTVHHIVIADNTAKMNASLFDAYGELVQPGDIIRLTG 92
Query: 101 CYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
+ +++ TLY+ K G IE++GEFC F + D S
Sbjct: 93 GFCSAYQHVSTLYAGKLGKIERLGEFCFPFTDKQDGS 129
>gi|328867421|gb|EGG15803.1| OB fold-containing protein [Dictyostelium fasciculatum]
Length = 216
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
I D+ K +N IVL+ + K+ + L VAD+TACIN++L+D G + PGD
Sbjct: 45 IIDIKPYAKGINSIFIVLEKGNAIKKKDGFIYQVL-VADNTACINMTLFDVLGEQVQPGD 103
Query: 95 IVRLTKCYAQIWRNCLTLYSSKS-GLIEKIGEFCMVFNENLDMS 137
I+RL YA I+ L LY KS G+IEKIGEF F E+ ++S
Sbjct: 104 ILRLRGGYATIFHELLNLYVGKSGGIIEKIGEFQFSFVEHPNLS 147
>gi|312080784|ref|XP_003142748.1| hypothetical protein LOAG_07166 [Loa loa]
gi|307762090|gb|EFO21324.1| hypothetical protein LOAG_07166 [Loa loa]
Length = 182
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
I L +KNVN+T IVLDI + +VRT++VAD T + + +W++ G + GD
Sbjct: 11 ISQLMPNMKNVNLTFIVLDIGQSRRTPQGHDVRTIRVADPTGSVLMGVWNDVGDNISAGD 70
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
I RL + I++ L+L K G + K GEF MV+ E +MS
Sbjct: 71 IWRLRNGFTTIFKGSLSLSYGKMGELLKTGEFFMVYAEVPNMS 113
>gi|268534526|ref|XP_002632394.1| Hypothetical protein CBG00417 [Caenorhabditis briggsae]
Length = 135
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDI-SPRVTLKENREVRTLKVADSTACINLSLWD-EPGAL 89
D+ + L + + NVT IVLD S R T ++ + T+KVAD+T IN SL + E
Sbjct: 4 DIPLNQLQPNMNSFNVTAIVLDQGSYRRT--QSGSIITMKVADATGSINASLMNPEFTET 61
Query: 90 LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS-IPIP 141
PGDI++ Y I+++ LTL K+G +KIGEF M+F+E D+S +P+P
Sbjct: 62 FRPGDILKFRGAYTSIFQSGLTLSLGKNGECKKIGEFMMIFSETPDISQMPLP 114
>gi|351706040|gb|EHB08959.1| SOSS complex subunit B2 [Heterocephalus glaber]
Length = 135
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 45/70 (64%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALL 90
+ V++KD+ G KNVNV IVL+ KE REVR VAD T I +S+WD+ G L
Sbjct: 7 LPVFVKDIKPGQKNVNVVFIVLETGRVTETKEGREVRPRTVADKTGSIAVSVWDDIGGLT 66
Query: 91 HPGDIVRLTK 100
PGDI++LT+
Sbjct: 67 QPGDIIQLTR 76
>gi|17538518|ref|NP_501089.1| Protein C06G3.8 [Caenorhabditis elegans]
gi|351021147|emb|CCD83556.1| Protein C06G3.8 [Caenorhabditis elegans]
Length = 137
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLK-ENREVRTLKVADSTACINLSLWD-EPGAL 89
D+ + L + + +VT IVLD P + + + + ++KVAD++ IN S+ + E
Sbjct: 4 DIPLHQLQPNMNSFSVTVIVLD--PGIHRRTQTGTIISMKVADASGSINASIMNPEFNET 61
Query: 90 LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS-IPIP 141
PGDI++ Y I++ LTL KSG +K+GEF MVF+E D+S +P+P
Sbjct: 62 FKPGDILKFRGAYTSIYQGGLTLSVGKSGECKKVGEFMMVFSETPDISMMPLP 114
>gi|255559378|ref|XP_002520709.1| conserved hypothetical protein [Ricinus communis]
gi|223540094|gb|EEF41671.1| conserved hypothetical protein [Ricinus communis]
Length = 145
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 34 YIKDLHVGIK-NVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
Y+KD+ + N+N I+LD R+T++ + AD TA ++ LW E P
Sbjct: 11 YLKDIVPSAQTNINTQLILLD-KGRITMEGQNKTCLALAADETAAVHFQLWGEECDAFEP 69
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS----IPIPN 142
GDI+RL RN L L + K G IEK+GEF M F E +MS +P PN
Sbjct: 70 GDIIRLANGIFSYNRNNLVLRAGKRGSIEKVGEFTMAFVETPNMSEIRWVPDPN 123
>gi|326504070|dbj|BAK02821.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 143
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 31 MDVYIKDLHVGIKN-VNVTCIVLDISPRVT---LKENREVRTLKVADSTACINLSLWDEP 86
MDV +KDL N VN T IV+D + R T E L VAD TA ++ LW
Sbjct: 1 MDVKLKDLVPAATNTVNTTFIVVDKAARPTHANAHGREETCPLLVADETAAVHFLLWGTE 60
Query: 87 GALLHPGDIVRLTKCYAQIWR-NCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
PGDIVRLT R N L L + K G +EK+GEF M+F E +MS
Sbjct: 61 CDAFEPGDIVRLTSGIFSYHRGNNLFLRAGKRGRVEKVGEFTMMFVETPNMS 112
>gi|170583365|ref|XP_001896546.1| RIKEN cDNA 2610036N15 [Brugia malayi]
gi|158596221|gb|EDP34610.1| RIKEN cDNA 2610036N15, putative [Brugia malayi]
Length = 191
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 11/114 (9%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
I L +KN+N+T IVLDI + +VRT++VAD T + + +W++ G + GD
Sbjct: 11 ISQLMPNMKNINLTFIVLDIGQSRRTPQGHDVRTIRVADPTGSVLMGVWNDVGDNISAGD 70
Query: 95 IVRL-----------TKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
I RL + I++ L+L K G + K GEF MV++E +MS
Sbjct: 71 IWRLRLDLSLSFSVNMNGFTTIFKGSLSLSYGKMGELLKTGEFFMVYSEVPNMS 124
>gi|256076867|ref|XP_002574730.1| ob fold nucleic acid binding protein [Schistosoma mansoni]
gi|360044072|emb|CCD81619.1| putative ob fold nucleic acid binding protein [Schistosoma mansoni]
Length = 111
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%)
Query: 56 PRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLYSS 115
P K+ EVRT KVAD T IN+S+W+E +L+ P D+++L + + CL L
Sbjct: 5 PITRTKDGNEVRTAKVADRTGTINISVWNENSSLIAPCDVLQLVQGNTTVRGGCLNLNVG 64
Query: 116 KSGLIEKIGEFCMVFNENLDMS 137
+ G + KIGEFC F E+ D S
Sbjct: 65 RYGQLMKIGEFCFPFVESPDFS 86
>gi|326437873|gb|EGD83443.1| hypothetical protein PTSG_04050 [Salpingoeca sp. ATCC 50818]
Length = 117
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALL 90
M V +KD G K ++ T IV++ + KE +V +VAD T I LS + E GA +
Sbjct: 1 MGVAVKDARPGAKGLDCTFIVVEKDSVSSTKEGEQVIVWRVADPTGSILLSTFGEAGAAV 60
Query: 91 HPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNA 147
DI+RL Y +R+ +Y + G +E++GEF M+++ DMS +P P A
Sbjct: 61 KEADILRLKNGYCTRYRDQAVVYIGR-GTLERVGEFTMMYSLEPDMS-KLPPEPTAA 115
>gi|308482472|ref|XP_003103439.1| hypothetical protein CRE_28736 [Caenorhabditis remanei]
gi|308259860|gb|EFP03813.1| hypothetical protein CRE_28736 [Caenorhabditis remanei]
Length = 142
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 30 AMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWD-EPGA 88
+ D+ + L + + N T IVLD N + T+KVADST IN+SL + E
Sbjct: 2 SADLALNQLQPNMSSFNTTVIVLDPGGH-RRTHNGTITTMKVADSTGSINVSLMNPEFTE 60
Query: 89 LLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS-IPIP 141
GDI++ + I++ LTL K+G +K+ EF MVF+E D+S +P+P
Sbjct: 61 TFRAGDILKFRGAHTTIFQGGLTLSVGKNGECKKVSEFMMVFSETPDISQMPLP 114
>gi|218199848|gb|EEC82275.1| hypothetical protein OsI_26496 [Oryza sativa Indica Group]
Length = 236
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 30 AMDVYIKDL-HVGIKNVNVTCIVLDISPRVT-----LKENREVRTLK-VADSTACINLSL 82
A V +KDL NVN T IVLD + R + RE L VAD TA + L
Sbjct: 90 ASTVKLKDLVPAATNNVNTTFIVLDKAARAPPPPHGRADAREETCLALVADETAAAHFLL 149
Query: 83 WDEPGALLHPGDIVRLTKCYAQIWR-NCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
W PGDIVRLT R N L L + + G EK+GEF M+F E +MS
Sbjct: 150 WGAERDAFEPGDIVRLTGGIFSYHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMS 205
>gi|259490625|ref|NP_001159037.1| uncharacterized protein LOC100304058 [Zea mays]
gi|195643128|gb|ACG41032.1| hypothetical protein [Zea mays]
Length = 162
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 31 MDVYIKDLHVGIKN-VNVTCIVLDISPRVTLKEN--REVRTLK-VADSTACINLSLWDEP 86
M V +KDL N VN T IVLD + T ++ RE L VAD TA + LW
Sbjct: 20 MAVKLKDLVPAATNTVNTTFIVLDKAAPSTRRQGGAREETCLALVADETAAAHFLLWGAE 79
Query: 87 GALLHPGDIVRLTKCYAQIWR-NCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
PGDIVRLT R N L L + + G EK+GEF M+F E +MS
Sbjct: 80 CGAFEPGDIVRLTDGIFSYHRGNALVLRAGRRGRAEKVGEFAMLFVETPNMS 131
>gi|357116634|ref|XP_003560085.1| PREDICTED: SOSS complex subunit B homolog [Brachypodium distachyon]
Length = 152
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 26 RKKEAMDVYIKDLHVGIKN-VNVTCIVLDISPRVT---LKENREVRTLK-VADSTACINL 80
+ EA V ++DL N VN T IVLD + R RE + VAD TA ++
Sbjct: 4 KGAEATTVQLEDLVPAATNTVNTTFIVLDKAARQAHGHAHNGREETCMSLVADETAAVHF 63
Query: 81 SLWDEPGALLHPGDIVRLTKCYAQIWR-NCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
LW PGDIVRLT R N L L + K G EK+GEF M+F E +MS
Sbjct: 64 MLWGAECEAFQPGDIVRLTGGIFSYHRGNSLVLRAGKRGRAEKVGEFTMLFVETPNMS 121
>gi|296086651|emb|CBI32286.3| unnamed protein product [Vitis vinifera]
Length = 155
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 44 NVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYA 103
N+N I+LD ++TL+ + VAD TA ++ +W + GDI+RL
Sbjct: 32 NINTQFIILD-KGKMTLEGKYKTCLTLVADETAAVHFQMWGDECDAFEGGDIIRLVDGIF 90
Query: 104 QIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS----IPIPNLPVNAPQSA 151
RN L L + K G EK+GEFCM F E +MS IP P+ P Q A
Sbjct: 91 SYNRNNLVLRAGKKGKAEKVGEFCMAFVETPNMSEIRWIPDPSNPKKYVQDA 142
>gi|226505248|ref|NP_001143606.1| uncharacterized protein LOC100276318 [Zea mays]
gi|195623224|gb|ACG33442.1| hypothetical protein [Zea mays]
Length = 143
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 31 MDVYIKDLHVGIKN-VNVTCIVLDISPRVTLKEN--REVRTLK-VADSTACINLSLWDEP 86
M V +KDL N VN T IVLD + T ++ RE L VAD TA + LW
Sbjct: 1 MAVKLKDLVPAATNTVNTTFIVLDKAAPSTRRQGGAREETCLALVADETAAAHFLLWGAE 60
Query: 87 GALLHPGDIVRLTKCYAQIWR-NCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
PGDIVRLT R N L L + + G EK+GEF M+F E +MS
Sbjct: 61 CGAFEPGDIVRLTDGIFSYHRGNVLVLRAGRRGRAEKVGEFAMLFVETPNMS 112
>gi|225436834|ref|XP_002270604.1| PREDICTED: SOSS complex subunit B homolog [Vitis vinifera]
Length = 137
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 44 NVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYA 103
N+N I+LD ++TL+ + VAD TA ++ +W + GDI+RL
Sbjct: 14 NINTQFIILD-KGKMTLEGKYKTCLTLVADETAAVHFQMWGDECDAFEGGDIIRLVDGIF 72
Query: 104 QIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS----IPIPNLPVNAPQSA 151
RN L L + K G EK+GEFCM F E +MS IP P+ P Q A
Sbjct: 73 SYNRNNLVLRAGKKGKAEKVGEFCMAFVETPNMSEIRWIPDPSNPKKYVQDA 124
>gi|147777092|emb|CAN67844.1| hypothetical protein VITISV_016667 [Vitis vinifera]
Length = 223
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 44 NVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYA 103
N+N I+LD ++TL+ + VAD TA ++ +W + GDI+RL
Sbjct: 100 NINTQFIILD-KGKMTLEGKYKTCLTLVADETAAVHFQMWGDECDAFEGGDIIRLVDGIF 158
Query: 104 QIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS----IPIPNLPVNAPQSA 151
RN L L + K G EK+GEFCM F E +MS IP P+ P Q A
Sbjct: 159 SYNRNNLVLRAGKKGKAEKVGEFCMAFVETPNMSEIRWIPDPSNPKKYVQDA 210
>gi|297725791|ref|NP_001175259.1| Os07g0564400 [Oryza sativa Japonica Group]
gi|255677889|dbj|BAH93987.1| Os07g0564400 [Oryza sativa Japonica Group]
Length = 470
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 33 VYIKDLH-VGIKNVNVTCIVLDISPRVTL------KENREVRTLK-VADSTACINLSLWD 84
V +KDL NVN T IVLD + R + RE L VAD TA + LW
Sbjct: 20 VKLKDLAPAATNNVNTTFIVLDKAARAPPPPPHGRADAREETCLALVADETAAAHFLLWG 79
Query: 85 EPGALLHPGDIVRLTKCYAQIWR-NCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
PGDIVRLT R N L L + + G EK+GEF M+F E +MS
Sbjct: 80 AERDAFEPGDIVRLTGGIFSYHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMS 133
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 33 VYIKDLH-VGIKNVNVTCIVLDISPRVTL------KENREVRTLK-VADSTACINLSLWD 84
V +KDL NVN T IVLD + R + RE L VAD TA + LW
Sbjct: 173 VKLKDLAPAATNNVNTTFIVLDKAARAPPPPPHGRADAREETCLALVADETAAAHFLLWG 232
Query: 85 EPGALLHPGDIVRLTKCYAQIWR-NCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
PGDIVRLT R N L L + + G EK+GEF M+F E +MS
Sbjct: 233 AERDAFEPGDIVRLTGGIFSYHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMS 286
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 33 VYIKDLH-VGIKNVNVTCIVLDISPRVTL------KENREVRTLK-VADSTACINLSLWD 84
V +KDL NVN T IVLD + R + RE L VAD TA + LW
Sbjct: 326 VKLKDLAPAATNNVNTTFIVLDKAARAPPPPPHGRADAREETCLALVADETAAAHFLLWG 385
Query: 85 EPGALLHPGDIVRLTKCYAQIWR-NCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
PGDIVRLT R N L L + + G EK+GEF M+F E +MS
Sbjct: 386 AERDAFEPGDIVRLTGGIFSYHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMS 439
>gi|22830943|dbj|BAC15808.1| hypothetical protein [Oryza sativa Japonica Group]
gi|50510185|dbj|BAD31279.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 164
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 33 VYIKDLH-VGIKNVNVTCIVLDISPRVTL------KENREVRTLK-VADSTACINLSLWD 84
V +KDL NVN T IVLD + R + RE L VAD TA + LW
Sbjct: 20 VKLKDLAPAATNNVNTTFIVLDKAARAPPPPPHGRADAREETCLALVADETAAAHFLLWG 79
Query: 85 EPGALLHPGDIVRLTKCYAQIWR-NCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
PGDIVRLT R N L L + + G EK+GEF M+F E +MS
Sbjct: 80 AERDAFEPGDIVRLTGGIFSYHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMS 133
>gi|125600735|gb|EAZ40311.1| hypothetical protein OsJ_24757 [Oryza sativa Japonica Group]
Length = 317
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 33 VYIKDLH-VGIKNVNVTCIVLDISPRVTL------KENREVRTLK-VADSTACINLSLWD 84
V +KDL NVN T IVLD + R + RE L VAD TA + LW
Sbjct: 20 VKLKDLAPAATNNVNTTFIVLDKAARAPPPPPHGRADAREETCLALVADETAAAHFLLWG 79
Query: 85 EPGALLHPGDIVRLTKCYAQIWR-NCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
PGDIVRLT R N L L + + G EK+GEF M+F E +MS
Sbjct: 80 AERDAFEPGDIVRLTGGIFSYHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMS 133
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 33 VYIKDLH-VGIKNVNVTCIVLDISPRVTL------KENREVRTLK-VADSTACINLSLWD 84
V +KDL NVN T IVLD + R + RE L VAD TA + LW
Sbjct: 173 VKLKDLAPAATNNVNTTFIVLDKAARAPPPPPHGRADAREETCLALVADETAAAHFLLWG 232
Query: 85 EPGALLHPGDIVRLTKCYAQIWR-NCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
PGDIVRLT R N L L + + G EK+GEF M+F E +MS
Sbjct: 233 AERDAFEPGDIVRLTGGIFSYHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMS 286
>gi|22830941|dbj|BAC15806.1| hypothetical protein [Oryza sativa Japonica Group]
gi|22830944|dbj|BAC15809.1| hypothetical protein [Oryza sativa Japonica Group]
gi|22830945|dbj|BAC15810.1| hypothetical protein [Oryza sativa Japonica Group]
gi|50510183|dbj|BAD31277.1| hypothetical protein [Oryza sativa Japonica Group]
gi|50510186|dbj|BAD31280.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 164
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 33 VYIKDLH-VGIKNVNVTCIVLDISPRVTL------KENREVRTLK-VADSTACINLSLWD 84
V +KDL NVN T IVLD + R + RE L VAD TA + LW
Sbjct: 20 VKLKDLAPAATNNVNTTFIVLDKAARAPPPPPHGRADAREETCLALVADETAAAHFLLWG 79
Query: 85 EPGALLHPGDIVRLTKCYAQIWR-NCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
PGDIVRLT R N L L + + G EK+GEF M+F E +MS
Sbjct: 80 AERDAFEPGDIVRLTGGIFSYHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMS 133
>gi|449435653|ref|XP_004135609.1| PREDICTED: SOSS complex subunit B homolog [Cucumis sativus]
gi|449485696|ref|XP_004157248.1| PREDICTED: SOSS complex subunit B homolog [Cucumis sativus]
Length = 139
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 31 MDVYIKDLHVGIKN-VNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGAL 89
M + +KDL +N VN IVL+ +N+ ++L VAD TA ++ LW + +
Sbjct: 1 MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSL-VADETAAVHFQLWGDECDV 59
Query: 90 LHPGDIVRLTKCYAQIWR-NCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
+ P DI+RLT R N L L + K G IEK+GEF MVF E +MS
Sbjct: 60 VEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMS 108
>gi|125558819|gb|EAZ04355.1| hypothetical protein OsI_26494 [Oryza sativa Indica Group]
Length = 163
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 33 VYIKDLHVGIKN-VNVTCIVLDISPRVT-----LKENREVRTLK-VADSTACINLSLWDE 85
V +KDL N VN T IVLD + R + RE L VAD TA + LW
Sbjct: 20 VKLKDLVPAATNSVNTTFIVLDKAARAPPPPHGRADAREETCLALVADETAAAHFLLWGA 79
Query: 86 PGALLHPGDIVRLTKCYAQIWR-NCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
PGDIVRLT R N L L + + G EK+GEF M+F E +MS
Sbjct: 80 ERDAFEPGDIVRLTGGIFSYHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMS 132
>gi|224130264|ref|XP_002320792.1| predicted protein [Populus trichocarpa]
gi|222861565|gb|EEE99107.1| predicted protein [Populus trichocarpa]
Length = 138
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 44 NVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYA 103
N+N IVLD ++ +N+ L VAD TA ++ W + PGDI+ L
Sbjct: 14 NINTQFIVLDKGKKILEGQNKTCLAL-VADETASVHFQFWGDECDAFEPGDIIHLANGIF 72
Query: 104 QIWRN-CLTLYSSKSGLIEKIGEFCMVFNENLDMS----IPIPNLP 144
RN + L + + G I+K+GEF MVF E +MS +P PN P
Sbjct: 73 SYNRNNSIVLRAGRRGAIKKVGEFTMVFVETPNMSEITWVPDPNRP 118
>gi|403352696|gb|EJY75864.1| SOSS complex subunit B1 [Oxytricha trifallax]
Length = 160
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ I +L +KN+++ IVL LK + VADST IN + + E G + P
Sbjct: 30 IKISELKPQMKNLDLKVIVLTKDVPKELKNKEVLNQCLVADSTGKINCNFYGEVGDKIKP 89
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFN 131
GDI+ L Y I+++ + LY S G + +I +F +FN
Sbjct: 90 GDIIFLMNAYTSIYKDHMVLYQSARGGVYRIRDFYYIFN 128
>gi|302818869|ref|XP_002991107.1| hypothetical protein SELMODRAFT_132836 [Selaginella moellendorffii]
gi|300141201|gb|EFJ07915.1| hypothetical protein SELMODRAFT_132836 [Selaginella moellendorffii]
Length = 147
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 35 IKDLHVGI-KNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPG 93
++DL + N+N T I+L+ + VADSTA ++L +W P
Sbjct: 4 VRDLRPSVGNNINTTFIILEKYNASRSDGGILMCIALVADSTASVHLQMWGAECDAFQPS 63
Query: 94 DIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
DIVRLT + L L + K GL+EKIGEF MVF E +MS
Sbjct: 64 DIVRLTNGIFSFHKANLVLRAGKKGLLEKIGEFSMVFVEIPNMS 107
>gi|302819957|ref|XP_002991647.1| hypothetical protein SELMODRAFT_134041 [Selaginella moellendorffii]
gi|300140496|gb|EFJ07218.1| hypothetical protein SELMODRAFT_134041 [Selaginella moellendorffii]
Length = 147
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 35 IKDLHVGI-KNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPG 93
++DL + N+N T I+L+ + VADSTA ++L +W P
Sbjct: 4 VRDLRPSVGNNINTTFIILEKYNASRSDGGILMCIALVADSTASVHLQMWGAECDAFQPS 63
Query: 94 DIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
DIVRLT + L L + K GL+EKIGEF MVF E +MS
Sbjct: 64 DIVRLTNGIFSFHKANLVLRAGKKGLLEKIGEFSMVFVEIPNMS 107
>gi|125600734|gb|EAZ40310.1| hypothetical protein OsJ_24755 [Oryza sativa Japonica Group]
Length = 164
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 33 VYIKDLH-VGIKNVNVTCIVLDISPRVTL------KENREVRTLK-VADSTACINLSLWD 84
V +KDL NV T IVLD + R + RE L VAD TA + LW
Sbjct: 20 VKLKDLAPAATNNVYTTFIVLDKAARAPPPPPHGRADAREETCLALVADETAAAHFLLWG 79
Query: 85 EPGALLHPGDIVRLTKCYAQIWR-NCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
PGDIVRLT R N L L + + G EK+GEF M+F E +MS
Sbjct: 80 AERDAFEPGDIVRLTGGIFSYHRGNSLVLRAGRRGRAEKVGEFTMLFVETPNMS 133
>gi|242045988|ref|XP_002460865.1| hypothetical protein SORBIDRAFT_02g036480 [Sorghum bicolor]
gi|241924242|gb|EER97386.1| hypothetical protein SORBIDRAFT_02g036480 [Sorghum bicolor]
Length = 178
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 56/127 (44%), Gaps = 22/127 (17%)
Query: 33 VYIKDLHVGIKN-VNVTCIVLDI-------------------SPRVTLKENREVRTLK-V 71
V +KDL N VN T IVLD S +E +EV L V
Sbjct: 21 VKLKDLVPAATNTVNTTFIVLDKAAPSARPSHRHPHAQAARDSGGGGGREEKEVTCLALV 80
Query: 72 ADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIWR-NCLTLYSSKSGLIEKIGEFCMVF 130
AD TA + LW PGDIVRLT R N L L + + G EK+GEF M+F
Sbjct: 81 ADETAAAHFLLWGGECGAFEPGDIVRLTDGIFSYHRGNALVLRAGRRGRAEKVGEFTMLF 140
Query: 131 NENLDMS 137
E +MS
Sbjct: 141 VETPNMS 147
>gi|118376552|ref|XP_001021458.1| hypothetical protein TTHERM_00318760 [Tetrahymena thermophila]
gi|89303225|gb|EAS01213.1| hypothetical protein TTHERM_00318760 [Tetrahymena thermophila
SB210]
Length = 161
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 53/96 (55%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
IK++ KN+ + IVL SP + K+ + + +ADST CI ++++D+ G + +
Sbjct: 42 IKNIKPFDKNIELKFIVLSKSPPIKTKQGTIMTPMIIADSTGCIQMNVFDDYGTFIQESN 101
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVF 130
YA ++++ L LY K G+++++ ++ F
Sbjct: 102 TCYTQNAYATMYKDRLILYQGKQGILKQLSDYFFDF 137
>gi|345312521|ref|XP_003429263.1| PREDICTED: SOSS complex subunit B1-like, partial [Ornithorhynchus
anatinus]
Length = 49
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/47 (61%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 55 SPRVT-LKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTK 100
S RVT K+ EVRT KVAD T IN+S+WD+ G L+ PGDI+RLTK
Sbjct: 2 SGRVTKTKDGHEVRTCKVADKTGSINISVWDDAGTLIQPGDIIRLTK 48
>gi|241690079|ref|XP_002412890.1| ob fold nucleic acid binding protein, putative [Ixodes
scapularis]
gi|215506692|gb|EEC16186.1| ob fold nucleic acid binding protein, putative [Ixodes
scapularis]
Length = 180
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 26 RKKEAMDVY----IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLS 81
R+ E ++ I+DL G+KN+++ IVL+I KE EVRT KV D + IN+S
Sbjct: 23 RRPEGLETMEPTTIRDLKPGMKNLSIIFIVLEIGRPNMTKETHEVRTCKVPDRSGSINVS 82
Query: 82 LWDEPGALLHPG 93
+WDEPG + G
Sbjct: 83 VWDEPGPCIQQG 94
>gi|344268304|ref|XP_003406001.1| PREDICTED: SOSS complex subunit B2-like [Loxodonta africana]
Length = 209
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDIS---------PRVTLKENREVRTLKVADSTACINLSLW 83
++IKD+ G+KN+NV IVL+I P+ + + R + C
Sbjct: 9 LFIKDIKPGLKNLNVVFIVLEIGKWVPRPAPPPQCSPEPRGGRRPGEPGPPPFCPASFSV 68
Query: 84 DEPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
P +R YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 PPRTWPPGPPTGLR----YASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 123
>gi|345797596|ref|XP_536009.3| PREDICTED: SOSS complex subunit B2 [Canis lupus familiaris]
Length = 182
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 88 ALLHPGDIVRLTKC-YAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVN 146
A GD+ L YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 41 AATRTGDVTPLNPVWYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDY--- 97
Query: 147 APQSANGNSNPGNMNNSGNNKGNMRPNPIDRDV 179
Q + G N N+ NN G P+ V
Sbjct: 98 RGQQSRGAHNEQKSNSMNNNMGTGTFGPVGNGV 130
>gi|333910219|ref|YP_004483952.1| OB-fold tRNA/helicase-type nucleic acid binding protein
[Methanotorris igneus Kol 5]
gi|333750808|gb|AEF95887.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanotorris
igneus Kol 5]
Length = 637
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 7/111 (6%)
Query: 23 EINRKKEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACI 78
E + ++E + I D+ G +NV VT +++IS T K ++R++++AD+T I
Sbjct: 50 EFDLEEEDYEFTINDITEGQRNVEVTGRIMNISEIRTFKRKDGTEGKLRSIEIADNTGTI 109
Query: 79 NLSLWDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEF 126
L+LWD+ L L GD+V++ Y++ WR+ + L SS I+K+ ++
Sbjct: 110 RLTLWDDKVELADGLKVGDVVKVENAYSRKWRDRIELNSSADTKIDKLTDY 160
>gi|256810698|ref|YP_003128067.1| replication factor A [Methanocaldococcus fervens AG86]
gi|256793898|gb|ACV24567.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanocaldococcus
fervens AG86]
Length = 659
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 11/119 (9%)
Query: 13 KNHGMRAERKEINRKKEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRT 68
K HG+ ++KE+ + IKD+ G NV +T +V D+S T K + R
Sbjct: 66 KEHGVDIDKKEVE------EFLIKDIEEGQINVEITGVVTDVSDVKTFKRKDGSEGKYRR 119
Query: 69 LKVADSTACINLSLWDEPGAL-LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEF 126
+ +AD + I ++LWD+ + ++ GDI+++T+ A+ W N L L S+ I+K+ ++
Sbjct: 120 IVIADKSGTIAMTLWDDLAEMDINIGDILKITRARARKWGNRLELSSTSETNIKKLEKY 178
>gi|429966164|gb|ELA48161.1| hypothetical protein VCUG_00399 [Vavraia culicis 'floridensis']
Length = 108
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
I D+ KN +T +V+ + K+N V + VAD T + S++++ LH GD
Sbjct: 3 ISDISAYNKNFELTFMVIKSLGHIKTKDNDMVYSYLVADDTGSVEYSIFNQS---LHLGD 59
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVF 130
I+ + YA ++ L +Y+S+ + ++IGEFC F
Sbjct: 60 IIMVNYAYATFFKGRLRVYNSELTVAKRIGEFCFSF 95
>gi|357456065|ref|XP_003598313.1| SOSS complex subunit B1 [Medicago truncatula]
gi|355487361|gb|AES68564.1| SOSS complex subunit B1 [Medicago truncatula]
Length = 196
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 44 NVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYA 103
N+ I+L+ + +N++ L VAD TA ++L LW + GDIV +T
Sbjct: 73 NIETKFIILEKGRTILEGQNKKCLAL-VADETAAVHLQLWGDECDYFDSGDIVYITNGIF 131
Query: 104 QIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS----IPIPNLP 144
R L L + K G +EKIGEF M + E +MS IP P P
Sbjct: 132 SYLRGNLILRAGKRGKLEKIGEFTMSYVETPNMSEIHWIPDPTNP 176
>gi|374636152|ref|ZP_09707733.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanotorris
formicicus Mc-S-70]
gi|373559967|gb|EHP86245.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanotorris
formicicus Mc-S-70]
Length = 637
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 59/99 (59%), Gaps = 7/99 (7%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEPGAL- 89
I D+ G ++V +T +++IS T K ++R++++AD+T I L+LWD+ L
Sbjct: 62 INDITEGQRDVEITGRIMNISEIRTFKRKDGTEGKLRSIEIADNTGVIRLTLWDDKVELA 121
Query: 90 --LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEF 126
L+ GD+V++ K Y++ WR+ + L SS I K+ ++
Sbjct: 122 EDLNVGDVVKVEKAYSRKWRDRIELNSSADTKIYKLTDY 160
>gi|357456067|ref|XP_003598314.1| SOSS complex subunit B1 [Medicago truncatula]
gi|355487362|gb|AES68565.1| SOSS complex subunit B1 [Medicago truncatula]
Length = 147
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 44 NVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYA 103
N+ I+L+ + +N++ L VAD TA ++L LW + GDIV +T
Sbjct: 24 NIETKFIILEKGRTILEGQNKKCLAL-VADETAAVHLQLWGDECDYFDSGDIVYITNGIF 82
Query: 104 QIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS----IPIPNLP 144
R L L + K G +EKIGEF M + E +MS IP P P
Sbjct: 83 SYLRGNLILRAGKRGKLEKIGEFTMSYVETPNMSEIHWIPDPTNP 127
>gi|289192269|ref|YP_003458210.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanocaldococcus
sp. FS406-22]
gi|288938719|gb|ADC69474.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanocaldococcus
sp. FS406-22]
Length = 648
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 13 KNHGMRAERKEINRKKEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRT 68
K HG+ E +K+ + I D+ G +V +T +V D+S T K + R
Sbjct: 56 KEHGIYGE------EKDDEEFLISDIEEGQISVEITGVVTDVSDIKTFKRRDGSLGKYRR 109
Query: 69 LKVADSTACINLSLWDEPGAL-LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
+ +AD + I ++LWD+ L + GD++++ + A+ WRN L L S+ IEK+
Sbjct: 110 ITIADKSGTIRMTLWDDLAELDVKVGDVIKIERARARKWRNNLELSSTSETKIEKL 165
>gi|336121122|ref|YP_004575897.1| OB-fold tRNA/helicase-type nucleic acid binding protein
[Methanothermococcus okinawensis IH1]
gi|334855643|gb|AEH06119.1| nucleic acid binding OB-fold tRNA/helicase-type
[Methanothermococcus okinawensis IH1]
Length = 641
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 35 IKDLHVGIKNVNVTCIVLDISP--RVTLKENRE--VRTLKVADSTACINLSLWDEPGAL- 89
IKD+ G +NV +T ++DIS + K+ + VR++ VAD+T I L+LW++ L
Sbjct: 63 IKDIAEGQRNVEITGKIMDISDVREFSRKDGTKGKVRSIIVADNTGSIRLTLWNDKADLV 122
Query: 90 --LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCM----VFNENLDMSIPIPNL 143
L GD+V +T +++ W N + L S I KI + V E ++S PN+
Sbjct: 123 NNLKKGDVVEITNAFSRKWNNKIELNSGSDLTITKIENYDESKYPVVKECYNISELTPNM 182
Query: 144 P 144
P
Sbjct: 183 P 183
>gi|297619538|ref|YP_003707643.1| tRNA/helicase-type nucleic acid-binding protein [Methanococcus
voltae A3]
gi|297378515|gb|ADI36670.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanococcus
voltae A3]
Length = 643
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 29 EAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKE-------NREVRTLKVADSTACINLS 81
E D I D+ G ++V +T +++IS +KE ++ +L++AD++ I L+
Sbjct: 57 EDFDYKISDILEGQRDVEITGRIIEIS---NIKEFNKKDGSTGKLASLRIADNSGAIRLT 113
Query: 82 LWDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMV----FNENL 134
LW++ L L GD++++ +A+ W N + L S IEK+ EF EN
Sbjct: 114 LWNDKADLIIGLKKGDVIKIENAFARNWNNKMELNSGSELSIEKLDEFDESNYPKIKENY 173
Query: 135 DMSIPIPNLPVNAPQSA 151
++S + NLP + +
Sbjct: 174 NISELVENLPASIEATV 190
>gi|326922493|ref|XP_003207483.1| PREDICTED: SOSS complex subunit B2-like [Meleagris gallopavo]
Length = 226
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 102 YAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
YA +W+ CLTLY+ + G + KIGEFCMV++E + S P
Sbjct: 95 YASLWKGCLTLYTGRGGELHKIGEFCMVYSEVPNFSEP 132
>gi|148905746|gb|ABR16037.1| unknown [Picea sitchensis]
Length = 139
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 33 VYIKDLHVGIKN-VNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ IKDL N VN I+L+ +K+ + VAD +A ++ LW +
Sbjct: 2 INIKDLCPAATNTVNTKFIMLEKGK--PMKDGEKTCLSLVADQSAAVHFQLWGDEYDAFQ 59
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
PGDI+ LT R L L + K G KIGEF M F E ++S
Sbjct: 60 PGDIIHLTNGIFSFHRTNLVLRAGKKGKALKIGEFTMAFVEAPNIS 105
>gi|15242865|ref|NP_201174.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]
gi|10177050|dbj|BAB10462.1| unnamed protein product [Arabidopsis thaliana]
gi|332010403|gb|AED97786.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]
Length = 139
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 31 MDVYIKDLHVGIKN-VNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGAL 89
M +++KD+ +N ++ I+LD + + + AD TA +++ LW +
Sbjct: 1 MQLFLKDIVPAAQNNIDTRFIILD-KAKSSAANGKNYCIALAADETAAVHIQLWGDECDA 59
Query: 90 LHPGDIVRLTKCYAQIWRNC-LTLYSSKSGLIEKIGEFCMVFNENLDMS----IPIPNLP 144
GDIV+LT RN L L + K G +EK+GEF + F E ++S IP P P
Sbjct: 60 FEAGDIVKLTNGIFSYVRNSGLILRAGKRGKMEKMGEFTVAFVETPNISEIQWIPDPENP 119
Query: 145 VNAPQSA 151
QS
Sbjct: 120 KRYIQSG 126
>gi|45358595|ref|NP_988152.1| replication factor A [Methanococcus maripaludis S2]
gi|44921353|emb|CAF30588.1| replication protein A [Methanococcus maripaludis S2]
Length = 642
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 15/129 (11%)
Query: 28 KEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENR------EVRTLKVADSTACINLS 81
+E D IKD+ G KNV VT +++ISP NR ++ ++ + D+T L+
Sbjct: 57 EEEYDFSIKDIADGQKNVEVTGKIIEISPAKDF--NRKDGSTGKLASVTIGDNTGITRLT 114
Query: 82 LWDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCM----VFNENL 134
LW++ L L GD+V++ +++ W + + L S IEK+ ++ + +N
Sbjct: 115 LWNDKTDLIEGLKKGDVVKIENAFSRKWNDKVELNSGSELSIEKLKKYDESRYPILKDNY 174
Query: 135 DMSIPIPNL 143
+S +PNL
Sbjct: 175 KISELMPNL 183
>gi|426338078|ref|XP_004033019.1| PREDICTED: SOSS complex subunit B2 isoform 2 [Gorilla gorilla
gorilla]
Length = 124
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 105 IWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
+W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 1 MWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDY 39
>gi|114582315|ref|XP_001167615.1| PREDICTED: SOSS complex subunit B2 isoform 2 [Pan troglodytes]
Length = 124
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 105 IWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
+W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 1 MWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDY 39
>gi|332209629|ref|XP_003253917.1| PREDICTED: SOSS complex subunit B2 isoform 2 [Nomascus leucogenys]
Length = 124
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 105 IWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
+W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 1 MWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDY 39
>gi|26324894|dbj|BAC26201.1| unnamed protein product [Mus musculus]
gi|74201125|dbj|BAE37421.1| unnamed protein product [Mus musculus]
gi|148664432|gb|EDK96848.1| RIKEN cDNA 5830411E10, isoform CRA_a [Mus musculus]
gi|148664433|gb|EDK96849.1| RIKEN cDNA 5830411E10, isoform CRA_a [Mus musculus]
gi|148664434|gb|EDK96850.1| RIKEN cDNA 5830411E10, isoform CRA_a [Mus musculus]
Length = 118
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 105 IWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
+W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 1 MWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDY 39
>gi|362999018|ref|NP_001241665.1| SOSS complex subunit B2 isoform 2 [Homo sapiens]
gi|52545710|emb|CAH56209.1| hypothetical protein [Homo sapiens]
gi|78070382|gb|AAI07724.1| OBFC2A protein [Homo sapiens]
gi|119631242|gb|EAX10837.1| oligonucleotide/oligosaccharide-binding fold containing 2A, isoform
CRA_c [Homo sapiens]
Length = 124
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 105 IWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
+W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 1 MWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDY 39
>gi|297797371|ref|XP_002866570.1| hypothetical protein ARALYDRAFT_919665 [Arabidopsis lyrata subsp.
lyrata]
gi|297312405|gb|EFH42829.1| hypothetical protein ARALYDRAFT_919665 [Arabidopsis lyrata subsp.
lyrata]
Length = 138
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 31 MDVYIKDLHVGIKN-VNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGAL 89
M +++KD+ +N +N I+LD + + N + AD TA +++ LW +
Sbjct: 1 MQLFLKDIVPAAQNNINTRFIILDKAK--SPAANGKNCIALAADETAAVHIQLWGDECDA 58
Query: 90 LHPGDIVRLTKCYAQIWRNC-LTLYSSKSGLIEKIGEFCMVFNENLDMS 137
GDIV+LT RN L L + K G +EK+GEF + F E ++S
Sbjct: 59 FEAGDIVKLTNGIFSYVRNSGLILRAGKRGKMEKMGEFTVAFVETPNIS 107
>gi|336253183|ref|YP_004596290.1| OB-fold tRNA/helicase-type nucleic acid binding protein [Halopiger
xanaduensis SH-6]
gi|335337172|gb|AEH36411.1| nucleic acid binding OB-fold tRNA/helicase-type [Halopiger
xanaduensis SH-6]
Length = 495
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEPGAL- 89
++DL +G+ NVN+ +VLD T + +V L V D T + ++LWDE L
Sbjct: 169 VEDLSLGLSNVNLVGVVLDTDSVRTFDRDDGSEGKVSNLAVGDETGRVRVTLWDEQADLA 228
Query: 90 --LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVN 146
L PG V + Y + L L+ G +E++ E E S PI + +
Sbjct: 229 TELEPGTTVEVVDGYVKERDGNLELHVGNRGTVEEVDEDVEYVPE----STPIEEVEIG 283
>gi|15669348|ref|NP_248153.1| replication factor A [Methanocaldococcus jannaschii DSM 2661]
gi|46577162|sp|Q58559.1|RPA_METJA RecName: Full=Replication factor A; Short=RF-A; Short=RP-A;
AltName: Full=Replication factor A protein 1; AltName:
Full=Single-stranded DNA-binding protein; AltName:
Full=mjaSSB
gi|1500014|gb|AAB99162.1| replication factor A related protein [Methanocaldococcus jannaschii
DSM 2661]
Length = 645
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 13 KNHGMRAERKEINRKKEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRT 68
K HG+ E +K + I D+ G V +T ++ DIS T K + +
Sbjct: 52 KEHGVYGE------EKNDEEFLISDIEEGQIGVEITGVITDISEIKTFKRRDGSLGKYKR 105
Query: 69 LKVADSTACINLSLWDEPGAL-LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
+ +AD + I ++LWD+ L + GD++++ + A+ WRN L L S+ I+K+
Sbjct: 106 ITIADKSGTIRMTLWDDLAELDVKVGDVIKIERARARKWRNNLELSSTSETKIKKL 161
>gi|134045604|ref|YP_001097090.1| replication factor A [Methanococcus maripaludis C5]
gi|132663229|gb|ABO34875.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Methanococcus
maripaludis C5]
Length = 642
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 28 KEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENR------EVRTLKVADSTACINLS 81
+E D IKD+ G KNV VT +++ISP NR ++ ++ + D+T L+
Sbjct: 57 EEEYDFTIKDIADGQKNVEVTGKIIEISPEKEF--NRKDGSTGKIASITIGDNTGITRLT 114
Query: 82 LWDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCM----VFNENL 134
LW++ L L GD+V++ +++ W + + L S I+K+ ++ + E+
Sbjct: 115 LWNDKTDLIEGLKKGDVVKIENAFSRKWNDKVELNSGSELSIDKLKKYDESRYPILKESY 174
Query: 135 DMSIPIPNLP--VNAPQSA 151
+S +PN +NA A
Sbjct: 175 KISELMPNFSGTINAEVVA 193
>gi|426221254|ref|XP_004004825.1| PREDICTED: SOSS complex subunit B2 isoform 2 [Ovis aries]
Length = 126
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 105 IWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
+W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 1 MWKGCLTLYTGRGGELQKIGEFCMVYSELPNFSEPNPDY 39
>gi|149046191|gb|EDL99084.1| similar to 5830411E10Rik protein, isoform CRA_a [Rattus norvegicus]
gi|149046192|gb|EDL99085.1| similar to 5830411E10Rik protein, isoform CRA_a [Rattus norvegicus]
gi|149046193|gb|EDL99086.1| similar to 5830411E10Rik protein, isoform CRA_a [Rattus norvegicus]
gi|149046194|gb|EDL99087.1| similar to 5830411E10Rik protein, isoform CRA_a [Rattus norvegicus]
Length = 118
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 105 IWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
+W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 1 MWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDY 39
>gi|340624354|ref|YP_004742807.1| replication factor A [Methanococcus maripaludis X1]
gi|339904622|gb|AEK20064.1| replication factor A [Methanococcus maripaludis X1]
Length = 642
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 28 KEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENR------EVRTLKVADSTACINLS 81
+E D IKD+ G KNV VT +++ISP NR ++ ++ + D+T L+
Sbjct: 57 EEEYDFSIKDIADGQKNVEVTGKIIEISPAKDF--NRKDGSTGKLASVTIGDNTGITRLT 114
Query: 82 LWDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCM----VFNENL 134
W++ L L GD+V++ +++ W + + L S IEK+ ++ + +N
Sbjct: 115 FWNDKTDLIEGLKKGDVVKIENAFSRKWNDKVELNSGSELSIEKLKKYDESRYPILKDNY 174
Query: 135 DMSIPIPNL 143
+S +PNL
Sbjct: 175 KISELMPNL 183
>gi|159906009|ref|YP_001549671.1| replication factor A [Methanococcus maripaludis C6]
gi|159887502|gb|ABX02439.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanococcus
maripaludis C6]
Length = 642
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 28 KEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENR------EVRTLKVADSTACINLS 81
+E D I D+ G KNV VT +++ISP NR ++ ++ + D+T L+
Sbjct: 57 EEEYDFTINDIADGQKNVEVTGKIIEISPAKEF--NRKDGSTGKLASITIGDNTGITRLT 114
Query: 82 LWDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCM----VFNENL 134
LW++ L L GD+V++ +++ W + + L S I+K+ ++ + EN
Sbjct: 115 LWNDKTDLIEGLKKGDVVKIENAFSRKWNDKVELNSGSELSIDKLKKYDESRYPILKENY 174
Query: 135 DMSIPIPNLP--VNAPQSA 151
+S +PNL +NA A
Sbjct: 175 KISELMPNLSGTINAEVVA 193
>gi|150402213|ref|YP_001329507.1| replication factor A [Methanococcus maripaludis C7]
gi|150033243|gb|ABR65356.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanococcus
maripaludis C7]
Length = 641
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 28 KEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENR------EVRTLKVADSTACINLS 81
+E D I D+ G KNV VT +++ISP NR ++ ++ + D+T L+
Sbjct: 56 EEEYDFTISDIADGQKNVEVTGKIIEISPAKDF--NRKDGSTGKLASITIGDNTGITRLT 113
Query: 82 LWDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCM----VFNENL 134
LW++ L L GD+V++ +++ W + + L S I+K+ ++ + EN
Sbjct: 114 LWNDKTDLIEGLKKGDVVKIENAFSRKWNDKVELNSGSELSIDKLKKYDESRYPILKENY 173
Query: 135 DMSIPIPNLP--VNAPQSA 151
+S +PNL +NA A
Sbjct: 174 KISELMPNLSGTINAEVVA 192
>gi|448312151|ref|ZP_21501901.1| replication factor A [Natronolimnobius innermongolicus JCM 12255]
gi|445602658|gb|ELY56630.1| replication factor A [Natronolimnobius innermongolicus JCM 12255]
Length = 505
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Query: 29 EAMDVYIKD-LHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLW 83
+AMD + D L +G+ NVN+ +VLD T + +V L + DST + ++LW
Sbjct: 158 QAMDTHTVDALSLGLSNVNLVGLVLDTDSVRTFDRDDGSEGKVSNLVLGDSTGRVRVTLW 217
Query: 84 DEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPI 140
DE L + PG V + Y + L L+ G +E++ E E S PI
Sbjct: 218 DERADLATEIDPGTTVEVVDGYVKERDGTLELHVGNRGAVEEVDEDVEYVPE----STPI 273
Query: 141 PNLPVN 146
++ +
Sbjct: 274 EDVEIG 279
>gi|448342697|ref|ZP_21531643.1| replication factor A [Natrinema gari JCM 14663]
gi|445625092|gb|ELY78462.1| replication factor A [Natrinema gari JCM 14663]
Length = 485
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 32 DVY-IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEP 86
D Y ++DL +G+ NVN+ ++LD T + +V L + DST + ++LWDE
Sbjct: 160 DTYTVEDLSLGLSNVNLVGLLLDTDSVRTFDRDDGSEGKVSNLVLGDSTGRVRVTLWDEQ 219
Query: 87 GAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
AL L G V + Y + L L+ G +E+I EN PI ++
Sbjct: 220 AALATELETGTTVEVIDGYVKDRDGSLELHVGNRGAVEEIDAEVEYVPEN----TPIEDV 275
Query: 144 PVN 146
++
Sbjct: 276 EID 278
>gi|397772491|ref|YP_006540037.1| nucleic acid binding OB-fold tRNA/helicase-type [Natrinema sp.
J7-2]
gi|397681584|gb|AFO55961.1| nucleic acid binding OB-fold tRNA/helicase-type [Natrinema sp.
J7-2]
Length = 485
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 32 DVY-IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEP 86
D Y ++DL +G+ NVN+ ++LD T + +V L + DST + ++LWDE
Sbjct: 160 DTYTVEDLSLGLSNVNLVGLLLDTDSVRTFDRDDGSEGKVSNLVLGDSTGRVRVTLWDEQ 219
Query: 87 GAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
AL L G V + Y + L L+ G +E+I EN PI ++
Sbjct: 220 AALATELETGTTVEVIDGYVKDRDGSLELHVGNRGAVEEIDAEVEYVPEN----TPIEDV 275
Query: 144 PVN 146
++
Sbjct: 276 EID 278
>gi|432328198|ref|YP_007246342.1| OB-fold nucleic acid binding protein [Aciduliprofundum sp.
MAR08-339]
gi|432134907|gb|AGB04176.1| OB-fold nucleic acid binding protein [Aciduliprofundum sp.
MAR08-339]
Length = 135
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 35 IKDLHVGIKNVNVTCIVLDI-SPR---VTLKENREVRTLKVADSTACINLSLWDEPGALL 90
IKDL+ K VNV VL P+ E + V V D T I +SLW+E L+
Sbjct: 7 IKDLNPNAKRVNVLAKVLHKGEPKEINTKYGETKHVTEAIVGDETGTIIMSLWNEQADLV 66
Query: 91 HPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
G+ + + Y + R + L K G I+K E NE+LDMS
Sbjct: 67 DEGETIYVDNGYISLVRGHMRLNVGKYGSIKKSEEEIGEVNESLDMS 113
>gi|150399109|ref|YP_001322876.1| replication factor A [Methanococcus vannielii SB]
gi|150011812|gb|ABR54264.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanococcus
vannielii SB]
Length = 641
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 29 EAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWD 84
E D IKD+ G KNV V+ ++++S + ++ ++ + D+T L+LW+
Sbjct: 57 EEYDFSIKDIQDGQKNVEVSGKIIEVSNTKEFSKKDGSTGKLASITIGDNTGTTRLTLWN 116
Query: 85 EPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCM----VFNENLDMS 137
+ L L GD++++ +++ W + + L S IEK+ ++ + EN +S
Sbjct: 117 DKTELIEGLKKGDVIKIENAFSRKWNDKVELNSGSELSIEKLKKYDESRYPILKENYSIS 176
Query: 138 IPIPNL--PVNAP 148
+PNL +NA
Sbjct: 177 ELLPNLLAKINAE 189
>gi|351722907|ref|NP_001237260.1| uncharacterized protein LOC100500643 [Glycine max]
gi|255630841|gb|ACU15783.1| unknown [Glycine max]
Length = 139
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 44 NVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYA 103
N++ I+LD + T++ ++ VAD+TA I+ W + GDI+ LT
Sbjct: 14 NIDTKFIILD-KGKTTVEGQNKICLALVADATAAIHFQFWGDECDAFDSGDIICLTNGIF 72
Query: 104 QIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS----IPIPN 142
L L + K G + K+G F M F E +MS IP PN
Sbjct: 73 SYQHGNLILRAGKRGKLVKVGGFTMAFVETPNMSEIHWIPDPN 115
>gi|268575054|ref|XP_002642506.1| Hypothetical protein CBG06928 [Caenorhabditis briggsae]
Length = 170
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 42 IKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLS-LWDEPGALLHPGDIVRLTK 100
+KN+N T IVLD + V TL+VAD + IN + ++ + PGDI+++
Sbjct: 15 MKNINCTVIVLDGG-AYKPTAHGSVYTLRVADISGSINATIMYPDYTERFDPGDILKIKN 73
Query: 101 CYAQIWRNCLTLYSS--KSGLIEKIGEFCMVFNE 132
+ ++ L L + +G +K GEFCM+FNE
Sbjct: 74 ASGVVHQSRLQLGVNYRMNGECKKSGEFCMIFNE 107
>gi|448721113|ref|ZP_21703696.1| replication factor A [Halobiforma nitratireducens JCM 10879]
gi|445779684|gb|EMA30601.1| replication factor A [Halobiforma nitratireducens JCM 10879]
Length = 485
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 32 DVY-IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEP 86
D Y I+DL +G+ NVN+ +VLD T + +V + + DST + ++LWDE
Sbjct: 160 DTYDIEDLSLGLSNVNLVGLVLDTDSIRTFDRDDGSEGKVSNVTLGDSTGRVRVTLWDEQ 219
Query: 87 GAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
L PG V + Y + L L+ G IE++
Sbjct: 220 AETATELEPGTTVEVVDGYVRERDGSLELHVGNRGAIEEV 259
>gi|145526384|ref|XP_001449003.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416569|emb|CAK81606.1| unnamed protein product [Paramecium tetraurelia]
Length = 138
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 28 KEAMDVYIKDLHVGIKNVNVTCIVLD-ISPRVTLKENREVRTLKVADSTACINLSLWDEP 86
K+ + IK+++ KN+ IVL I ++T K +++ +AD T L+L D
Sbjct: 16 KQKFENQIKNMYPTQKNLEFKFIVLKKIETQIT-KNQKKITKYWIADETGSAFLNLHDMD 74
Query: 87 GALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVF 130
+ + PGD+ + Y +++ + ++ K+G+ +K+ EF + +
Sbjct: 75 ESAISPGDVCVMVGAYTNLFKGMMNIHQGKNGIFKKVSEFDLQY 118
>gi|410670412|ref|YP_006922783.1| nucleic acid-binding OB-fold tRNA/helicase-type protein
[Methanolobus psychrophilus R15]
gi|409169540|gb|AFV23415.1| nucleic acid-binding OB-fold tRNA/helicase-type protein
[Methanolobus psychrophilus R15]
Length = 437
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 19 AERKEINR--KKEAMDVYIKDLHVGIKNVNVTCIVLDISPR-VTLK-ENREVRTLKVADS 74
A+R +NR + V +KDL G+ + ++T ++ I R VT++ E R V T D
Sbjct: 41 AKRTILNRFMSRSPTSVQVKDLMGGMNSFDITGRIISIEKRIVTVQGEQRSVFTGSFGDG 100
Query: 75 TACINLSLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
T + + WD+ L GD ++ Y ++W N LY K L+EK+
Sbjct: 101 TGICSFTCWDDMS--LKAGDAFQIKNAYTRLWNNRPELYFGKRSLLEKL 147
>gi|448336089|ref|ZP_21525200.1| replication factor A [Natrinema pallidum DSM 3751]
gi|445630447|gb|ELY83712.1| replication factor A [Natrinema pallidum DSM 3751]
Length = 488
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 32 DVY-IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEP 86
D Y ++DL +G+ NVN+ ++LD T + +V L + DST + ++LWDE
Sbjct: 160 DTYTVEDLSLGLSNVNLVGVLLDTDSVRTFDRDDGSEGKVSNLVLGDSTGRVRVTLWDEQ 219
Query: 87 GAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
L L G V + Y + L L+ G +E+I EN PI ++
Sbjct: 220 ADLATELEAGTTVEVIDGYVKDRDGSLELHVGNRGAVEEIDATVEYVPEN----TPIEDV 275
Query: 144 PVN 146
++
Sbjct: 276 EID 278
>gi|402580737|gb|EJW74686.1| hypothetical protein WUBG_14407, partial [Wuchereria bancrofti]
Length = 74
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
I L +KN+N+T IVLDI + +VRT++VAD T + + +W++ G + GD
Sbjct: 11 ISQLMPNMKNINLTFIVLDIGQSRRTPQGHDVRTIRVADPTGSVLMGVWNDVGDNIFAGD 70
Query: 95 IVRL 98
I RL
Sbjct: 71 IWRL 74
>gi|448347285|ref|ZP_21536161.1| replication factor A [Natrinema altunense JCM 12890]
gi|445631035|gb|ELY84282.1| replication factor A [Natrinema altunense JCM 12890]
Length = 476
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 32 DVY-IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEP 86
D Y ++DL +G+ NVN+ ++LD T + +V L + DST + ++LWDE
Sbjct: 160 DTYTVEDLSLGLSNVNLVGVLLDTDSVRTFDRDDGSEGKVSNLVLGDSTGRVRVTLWDEQ 219
Query: 87 GAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
L L G V + Y + L L+ G +E+I EN PI ++
Sbjct: 220 ADLATELEAGTTVEVIDGYVKDRDGSLELHVGNRGTVEEIDATVEYVPEN----TPIEDV 275
Query: 144 PVN 146
++
Sbjct: 276 EID 278
>gi|440491316|gb|ELQ73978.1| putative nucleic acid binding protein [Trachipleistophora hominis]
Length = 157
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
I D++ KN +T +V+ + ++N V + VAD T I S++++ L GD
Sbjct: 52 IADINAYNKNFELTFMVIKNLGHIKTRDNDVVYSYLVADDTGSIEYSIFNQS---LDLGD 108
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVF 130
I+ + YA ++ L +Y+S+ ++ ++GEF F
Sbjct: 109 IIAINYAYATFFKTRLRVYNSELTVVRRVGEFNFEF 144
>gi|330835246|ref|YP_004409974.1| single-stranded DNA-binding protein [Metallosphaera cuprina Ar-4]
gi|329567385|gb|AEB95490.1| single-stranded DNA-binding protein [Metallosphaera cuprina Ar-4]
Length = 156
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKEN---REVRTLKVADSTACINLSLWDEPG 87
MD I +L G++N+NVT VL++ + ++ R +R + V D T + L+LW
Sbjct: 1 MDEKIGNLKGGMENINVTARVLEVGEQKVVQTKNGPRTIREVMVGDDTGRVKLTLWGNQA 60
Query: 88 ALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN-LPVN 146
+ G I+++ + +++ + L + I E+ + SIP + +P N
Sbjct: 61 DEVKEGQIIKVENAWTTVFKGQVQLNAGSRSKI----------TESAEESIPEADQVPEN 110
Query: 147 AP 148
+P
Sbjct: 111 SP 112
>gi|341886166|gb|EGT42101.1| hypothetical protein CAEBREN_15185 [Caenorhabditis brenneri]
Length = 132
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 30 AMDVYIKDLHVGIKNVNVTCIVLDISPRVTLK-ENREVRTLKVADSTACINLSLWDEPGA 88
+ D+ + L + +++VT IVLD P V + ++ + T+KVADST IN S+ +
Sbjct: 2 SADIPLNQLQPNMNSISVTAIVLD--PGVNRRTQSGSIITMKVADSTGSINASIINPECD 59
Query: 89 LLHPGDIVRLTKCYAQIWRNCLTLYSSK 116
PGDI++ Y I++ C T S+
Sbjct: 60 TYKPGDILKFRGAYTSIYQVCPTTVISQ 87
>gi|407463903|ref|YP_006774785.1| OB-fold tRNA/helicase-type nucleic acid binding-protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047091|gb|AFS81843.1| OB-fold tRNA/helicase-type nucleic acid binding-protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 465
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISP--RVTLKENRE--VRTLKVADSTACINLSLWDEPG 87
++ +KDL+ G K +++ VL++SP + + K+ +RT+ V D+ + ++ LWDE
Sbjct: 63 EISLKDLYAGAKEISLETRVLNLSPAKQFSRKDGSPFYLRTMTVYDTNSTASVKLWDEKA 122
Query: 88 AL-----LHPGDIVRLTKCYAQ 104
L L PGD++++ K Y +
Sbjct: 123 NLPGIENLKPGDLIKIIKAYVK 144
>gi|325183436|emb|CCA17897.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 158
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 16/126 (12%)
Query: 27 KKEAMDVYIKDL--HVGIKNVNVTCIVLDISPR----------VTLKENREVR---TLKV 71
+K+ + IKD+ HV K +N+ IV++ + + +T ++ TL V
Sbjct: 3 RKKILLTRIKDIGPHVAEKEINLKAIVMESNSKEDQPQASGEAMTTSGSQASSINATLLV 62
Query: 72 ADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFN 131
D T CI+L + + GDI++ + + ++ + L+S+ SG +E++GEF M+F
Sbjct: 63 GDETGCISLVIPQYFAQHIRVGDIIQFYQVQVVMKKSRIYLWSA-SGKLERVGEFTMLFK 121
Query: 132 ENLDMS 137
E ++S
Sbjct: 122 EAYNVS 127
>gi|448494503|ref|ZP_21609490.1| replication factor A [Halorubrum californiensis DSM 19288]
gi|445689338|gb|ELZ41578.1| replication factor A [Halorubrum californiensis DSM 19288]
Length = 497
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 29 EAMDVY-IKDLHVGIKNVNVTCIVLDISPRVTLK-----ENREVRTLKVADSTACINLSL 82
+ +D Y ++DL +G +V++ VLD T E R V L V D T + ++L
Sbjct: 158 QVLDTYRVEDLALGASDVDLVGQVLDTDSIRTFDRDDGSEGR-VANLTVGDETGRVRVTL 216
Query: 83 WDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
WD+ L PG++V + Y + L L+ G +E++ E E D++
Sbjct: 217 WDDKADLAEEFDPGEVVEVGDGYVRERDGDLELHVGDRGTVERVDEDVEYVPETTDIA 274
>gi|332797833|ref|YP_004459333.1| single-strand DNA-binding protein [Acidianus hospitalis W1]
gi|332695568|gb|AEE95035.1| single-strand DNA-binding protein [Acidianus hospitalis W1]
Length = 142
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKE---NREVRTLKVADSTACINLSLWDEPG 87
M+ I +L G++NVNVT VL + + ++ R +R + + D T I L+LW G
Sbjct: 1 MEEKIGNLKGGMENVNVTGRVLQVGEQKVVQTRNGQRTIREVMIGDETGRIKLTLWGNQG 60
Query: 88 ALLHPGDIVRLTKCYAQIWRNCLTLYSS 115
+ G ++++ + +++ + L +
Sbjct: 61 DNIKEGQVIKVENGWTTVFKGQVQLNAG 88
>gi|150400778|ref|YP_001324544.1| replication factor A [Methanococcus aeolicus Nankai-3]
gi|150013481|gb|ABR55932.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanococcus
aeolicus Nankai-3]
Length = 651
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 13/99 (13%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKE-NRE------VRTLKVADSTACINLSLWDEPG 87
IKD+ G NV +T ++D++ L+E N++ VR++ +AD+T I L+LW++
Sbjct: 64 IKDISEGQSNVEITAKIIDMTD---LREFNKKDGTTGTVRSIVIADNTGSIRLTLWNDKA 120
Query: 88 AL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
+ L D++ +T +++ W N + L S IEKI
Sbjct: 121 NIVDNLEIRDVIEITGAFSRQWNNRIELNSGSDTKIEKI 159
>gi|254166808|ref|ZP_04873662.1| OB-fold nucleic acid binding domain protein [Aciduliprofundum
boonei T469]
gi|289596472|ref|YP_003483168.1| nucleic acid binding OB-fold tRNA/helicase-type [Aciduliprofundum
boonei T469]
gi|197624418|gb|EDY36979.1| OB-fold nucleic acid binding domain protein [Aciduliprofundum
boonei T469]
gi|289534259|gb|ADD08606.1| nucleic acid binding OB-fold tRNA/helicase-type [Aciduliprofundum
boonei T469]
Length = 137
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 35 IKDLHVGIKNVNVTCIVLDI-SPR---VTLKENREVRTLKVADSTACINLSLWDEPGALL 90
IKDL+ K VNV VL P+ E + V V D T I +SLW+E ++
Sbjct: 7 IKDLNPNAKRVNVLAKVLHKGEPKEINTKYGETKHVTEAVVGDETGTIIMSLWNEQADMI 66
Query: 91 HPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
G+I+ + Y + R + L K G I+K E NE LDMS
Sbjct: 67 EEGEIIYVDNGYISLVRGHMRLNVGKYGSIKKSEEELGEINEELDMS 113
>gi|448444635|ref|ZP_21589925.1| replication factor A [Halorubrum saccharovorum DSM 1137]
gi|445686048|gb|ELZ38389.1| replication factor A [Halorubrum saccharovorum DSM 1137]
Length = 496
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 29 EAMDVY-IKDLHVGIKNVNVTCIVLDISPRVTLK-----ENREVRTLKVADSTACINLSL 82
+ +D Y + DL +G +V++ VLD T E R V L V D T + ++L
Sbjct: 158 QVLDTYQVADLSLGASDVDLVGQVLDTDSVRTFDRDDGSEGR-VANLTVGDETGRVRVTL 216
Query: 83 WDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
WD+ L PG++V + Y + L L+ G +E++ E E D++
Sbjct: 217 WDDKAGLADEFGPGEVVEVGDGYVRERDGDLELHVGDRGTVERVDEDVEYVPETTDVA 274
>gi|146303452|ref|YP_001190768.1| single-stranded DNA-binding protein [Metallosphaera sedula DSM
5348]
gi|145701702|gb|ABP94844.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Metallosphaera
sedula DSM 5348]
Length = 158
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKEN---REVRTLKVADSTACINLSLWDEPG 87
MD I +L G++N++VT VL++ + ++ R +R + V D T + L+LW G
Sbjct: 1 MDEKIGNLKGGMENISVTARVLEVGEQKVVQTKNGPRTIREVMVGDDTGRVKLTLWGNQG 60
Query: 88 ALLHPGDIVRLTKCYAQIWRNCLTL 112
+ G I+++ + +++ + L
Sbjct: 61 DEVKEGQIIKVENAWTTVFKGQVQL 85
>gi|302348760|ref|YP_003816398.1| Single-stranded DNA binding protein [Acidilobus saccharovorans
345-15]
gi|302329172|gb|ADL19367.1| Single-stranded DNA binding protein [Acidilobus saccharovorans
345-15]
Length = 162
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLK---VADSTACINLSLWDEPGALLH 91
+ L G N+++ VL + P T+ R RT+ V D T I L+ W + L+
Sbjct: 12 VSSLREGEDNIDIKVRVLSVEPPKTIHTQRGDRTISEAVVGDETGRIKLTAWGQQAGKLN 71
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
GD V L + ++ + L G IEKI + + E + + P
Sbjct: 72 EGDAVELKGAWTTSFKGQVQLNIGSRGSIEKIDDGEVPKAEEIPENTP 119
>gi|448457207|ref|ZP_21595702.1| replication factor A [Halorubrum lipolyticum DSM 21995]
gi|445810788|gb|EMA60803.1| replication factor A [Halorubrum lipolyticum DSM 21995]
Length = 502
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 5 KLAGSHPEKNHGMRAERKEINRKKEA------MDVY-IKDLHVGIKNVNVTCIVLDISPR 57
++ G E G+ ++ R ++A +D Y ++DL +G +V++ VLD
Sbjct: 128 RVKGRPKEGYSGLEVSADKVERDEDAEVDVQVLDTYRVEDLSLGASDVDLVGQVLDTDSI 187
Query: 58 VTLK-----ENREVRTLKVADSTACINLSLWDEPGAL---LHPGDIVRLTKCYAQIWRNC 109
T E R V L V D T + ++LWD+ L P ++V + Y +
Sbjct: 188 RTFDRDDGSEGR-VANLTVGDETGRVRVTLWDDKADLADEFEPAEVVEVGDGYVRERDGD 246
Query: 110 LTLYSSKSGLIEKIGEFCMVFNENLDMS 137
L L+ G +E++ E E D++
Sbjct: 247 LELHVGDRGTVERVEEDVEYVPETTDIA 274
>gi|390938574|ref|YP_006402312.1| OB-fold tRNA/helicase-type nucleic acid binding-protein
[Desulfurococcus fermentans DSM 16532]
gi|390191681|gb|AFL66737.1| nucleic acid binding OB-fold tRNA/helicase-type [Desulfurococcus
fermentans DSM 16532]
Length = 152
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 57/138 (41%), Gaps = 17/138 (12%)
Query: 27 KKEAMDVYIKDLHVGIKNVNVTCIVLDI-SPRV--TLKENREVRTLKVADSTACINLSLW 83
K+E I DL G++ V V V+ I +PRV T K R + + D T + +LW
Sbjct: 7 KEETPPTNIIDLKPGMEKVTVKARVIKIEAPRVIRTKKGPRTISNAILGDETGRVETTLW 66
Query: 84 DEPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP---- 139
E L GD V + + ++ + L KS I KI D S+P
Sbjct: 67 GEKAGTLQEGDAVEVHGAWTTEFKGKVQLNIGKSSEIVKID----------DSSVPHSGE 116
Query: 140 IPNLPVNAPQSANGNSNP 157
IP AP + G S P
Sbjct: 117 IPEDSPTAPPGSGGISRP 134
>gi|448303724|ref|ZP_21493673.1| replication factor A [Natronorubrum sulfidifaciens JCM 14089]
gi|445593509|gb|ELY47687.1| replication factor A [Natronorubrum sulfidifaciens JCM 14089]
Length = 477
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLK-----ENREVRTLKVADSTACINLSLWDEPGAL 89
++ L +G+ NVN+ +VLD T E R V L + DST + ++LWDE L
Sbjct: 165 VEALSLGLSNVNLVGLVLDTGSVRTFDRDDGSEGR-VSNLTLGDSTGRVRVTLWDEQADL 223
Query: 90 ---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVN 146
+ P V + Y + L L+ G +E++ E E S PI +L +
Sbjct: 224 ATEIDPNTTVEVIDGYVKERDGSLELHVGNRGTVEEVDEDVEYVPE----STPIEDLEIG 279
>gi|374632071|ref|ZP_09704445.1| OB-fold nucleic acid binding protein [Metallosphaera
yellowstonensis MK1]
gi|373525901|gb|EHP70681.1| OB-fold nucleic acid binding protein [Metallosphaera
yellowstonensis MK1]
Length = 155
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKEN---REVRTLKVADSTACINLSLWDEPG 87
M+ I +L G++N+ VT VL++ + ++ R +R + V D T + L+LW G
Sbjct: 1 MEEKIGNLKGGMENIEVTARVLEVGEQKVVQTKNGPRTIREVMVGDDTGRVKLTLWGSQG 60
Query: 88 ALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLP 144
+ G ++++ + +++ + L + I + E + + + + P + P
Sbjct: 61 DTVKEGQVIKVENAWTTVFKGQVQLNAGSRSKISEASEASVPEADQVPETSPTDDSP 117
>gi|386875956|ref|ZP_10118104.1| nucleic acid-binding domain protein [Candidatus Nitrosopumilus
salaria BD31]
gi|386806246|gb|EIJ65717.1| nucleic acid-binding domain protein [Candidatus Nitrosopumilus
salaria BD31]
Length = 465
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISP--RVTLKENR--EVRTLKVADSTACINLSLWDEP 86
+++ +KDL+ G K +++ VL++SP + + K+ +RT+ V D + ++ LWDE
Sbjct: 62 VEMGLKDLYAGAKEISLETRVLNLSPAKQFSRKDGSPFYLRTMTVYDENSTASVKLWDEK 121
Query: 87 GAL-----LHPGDIVRLTKCYAQ 104
L L PGD++++ K Y +
Sbjct: 122 ANLPGVENLKPGDLIKIIKAYVK 144
>gi|448589662|ref|ZP_21649821.1| replication factor A [Haloferax elongans ATCC BAA-1513]
gi|445736090|gb|ELZ87638.1| replication factor A [Haloferax elongans ATCC BAA-1513]
Length = 486
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 31 MDVY-IKDLHVGIKNVNVTCIVLDISPRVTLK-----ENREVRTLKVADSTACINLSLWD 84
+D Y ++DL +G+ +VN+ +LD+ T E R V L V D+T + +++WD
Sbjct: 159 LDTYRVEDLALGLSDVNLKGKILDVGTVRTFDRDDGSEGR-VSNLSVGDATGRVRVTMWD 217
Query: 85 EPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
E L L G V + Y + L L+ G +E I E E D+
Sbjct: 218 ERADLVEELDAGQSVEIVDGYVRERDGSLELHVGSRGAVEVIDEDIEYVPETTDIG 273
>gi|145516609|ref|XP_001444193.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411604|emb|CAK76796.1| unnamed protein product [Paramecium tetraurelia]
Length = 138
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 50/99 (50%)
Query: 28 KEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPG 87
K+ + IK++ KN+ IVL K +++ +AD T L++ D
Sbjct: 16 KQKFENQIKNMCPTQKNLEFKFIVLKKVETQITKTYKKITKYWIADETGSAFLNVHDMDE 75
Query: 88 ALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEF 126
++++PGD+ + Y +++ + ++ K+G+ +K+ EF
Sbjct: 76 SVINPGDVCVMVGAYTNLFKGMMNIHQGKNGIFKKVSEF 114
>gi|408405262|ref|YP_006863245.1| RPA-like protein, partial [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|300521512|gb|ADK25967.1| RPA-like protein [Candidatus Nitrososphaera gargensis]
gi|408365858|gb|AFU59588.1| RPA-like protein [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 473
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLK-----ENREVRTLKVADSTACINLSLWDEPGAL 89
+KD++VG K+V VT +++I P T E RT+ V D A + + LWD+ L
Sbjct: 60 LKDIYVGAKDVTVTGRIMNIYPVHTFTKRDSNEQAATRTIVVYDKDARVKVKLWDKQVNL 119
Query: 90 -----LHPGDIVRLTKCYAQ 104
L GDI+++ K Y +
Sbjct: 120 PDEMGLQAGDIIKIIKGYVR 139
>gi|448579408|ref|ZP_21644604.1| replication factor A [Haloferax larsenii JCM 13917]
gi|445723357|gb|ELZ75000.1| replication factor A [Haloferax larsenii JCM 13917]
Length = 489
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 31 MDVY-IKDLHVGIKNVNVTCIVLDISPRVTLK-----ENREVRTLKVADSTACINLSLWD 84
+D Y ++DL +G+ +VN+ +LD+ T E R V L V D+T + +++WD
Sbjct: 159 LDTYRVEDLALGLSDVNLKGKILDVGTVRTFDRDDGSEGR-VSNLSVGDATGRVRVTMWD 217
Query: 85 EPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
E L L G V + Y + L L+ G +E I E E D+
Sbjct: 218 ERADLVEELDAGQSVEVVDGYVRERDGSLELHVGSRGAVEVIDEDIEYVPETTDIG 273
>gi|389845971|ref|YP_006348210.1| replication factor A [Haloferax mediterranei ATCC 33500]
gi|448616414|ref|ZP_21665124.1| replication factor A [Haloferax mediterranei ATCC 33500]
gi|388243277|gb|AFK18223.1| replication factor A [Haloferax mediterranei ATCC 33500]
gi|445751069|gb|EMA02506.1| replication factor A [Haloferax mediterranei ATCC 33500]
Length = 487
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 29 EAMDVY-IKDLHVGIKNVNVTCIVLDISPRVTLK-----ENREVRTLKVADSTACINLSL 82
+ +D Y ++DL +G+ +VN+ +LD T E R V L + D T I ++L
Sbjct: 157 QVLDTYRVEDLALGLSDVNLEGTILDTGTVRTFDRDDGTEGR-VSNLSIGDPTGRIRVTL 215
Query: 83 WDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDM 136
WDE L L G+ V + Y + L L+ G +E I E E D+
Sbjct: 216 WDERADLVEELETGESVEVVDGYVRERDGSLELHVGSRGAVEVIDEDIEYVPETTDI 272
>gi|218883974|ref|YP_002428356.1| single-stranded DNA-binding protein [Desulfurococcus kamchatkensis
1221n]
gi|218765590|gb|ACL10989.1| single-strand DNA-binding protein [Desulfurococcus kamchatkensis
1221n]
Length = 158
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 56/138 (40%), Gaps = 17/138 (12%)
Query: 27 KKEAMDVYIKDLHVGIKNVNVTCIVLDI-SPRV--TLKENREVRTLKVADSTACINLSLW 83
K E I DL G++ V V V+ I +PRV T K R + + D T + +LW
Sbjct: 13 KGETPPTNIIDLKPGMEKVTVKARVIKIEAPRVIRTKKGPRTISNAILGDETGRVETTLW 72
Query: 84 DEPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP---- 139
E L GD V + + ++ + L KS I KI D S+P
Sbjct: 73 GEKAGTLQEGDAVEVHGAWTTEFKGKVQLNIGKSSEIVKID----------DSSVPHSGE 122
Query: 140 IPNLPVNAPQSANGNSNP 157
IP AP + G S P
Sbjct: 123 IPEDSPTAPPGSGGISRP 140
>gi|448316065|ref|ZP_21505703.1| replication factor A [Natronococcus jeotgali DSM 18795]
gi|445610411|gb|ELY64185.1| replication factor A [Natronococcus jeotgali DSM 18795]
Length = 480
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 17/129 (13%)
Query: 31 MDVYIKDLH------VGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINL 80
+DV + D H +G+ +VN+ +VLD T + +V L V DST I +
Sbjct: 154 IDVQVSDTHTVEALSLGLSSVNLVGVVLDTDSVRTFDRDDGSEGKVANLVVGDSTGRIRV 213
Query: 81 SLWDEPGALL---HPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
++WDE + GD V + Y + L L+ G IE + EN
Sbjct: 214 TMWDERAEQVTEFETGDTVEVVDGYVRERDGSLELHVGNRGAIEPVDADVEYVPEN---- 269
Query: 138 IPIPNLPVN 146
+PI ++ +
Sbjct: 270 VPIEDVEIG 278
>gi|448396828|ref|ZP_21569276.1| replication factor A [Haloterrigena limicola JCM 13563]
gi|445673357|gb|ELZ25918.1| replication factor A [Haloterrigena limicola JCM 13563]
Length = 482
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 32 DVY-IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEP 86
D Y I+DL +G+ NV + ++LD T + +V L + DST + ++LWDE
Sbjct: 160 DTYAIEDLSLGLSNVTLVGLLLDTDSVRTFDRDDGSEGKVSNLVLGDSTGRVRVTLWDEQ 219
Query: 87 ---GALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
L G V + Y + L L+ G +E++ E E S PI +L
Sbjct: 220 ADRATELEAGATVEVIDGYVKERDGQLELHVGNRGAVEEVDEDVEYVPE----STPIEDL 275
Query: 144 PVN 146
+
Sbjct: 276 EIG 278
>gi|296242163|ref|YP_003649650.1| OB-fold tRNA/helicase-type nucleic acid binding-protein
[Thermosphaera aggregans DSM 11486]
gi|296094747|gb|ADG90698.1| nucleic acid binding OB-fold tRNA/helicase-type [Thermosphaera
aggregans DSM 11486]
Length = 167
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLK---VADSTACINLSLWDEPGALLH 91
IKDL G++NV+V VL P ++ + RT+ + DST + ++ W E L
Sbjct: 30 IKDLKPGMENVSVKARVLSSEPPHVIQTKKGPRTISNAVIGDSTGRVEVTAWGEKAGQLT 89
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQS 150
G+ V + + +R + L ++ ++KI + + E + +P AP+S
Sbjct: 90 EGEAVEIKGGWTTEFRGKVQLNIGRTTEVKKIDDSEVPQAEEIPEEMP------TAPES 142
>gi|254167499|ref|ZP_04874351.1| OB-fold nucleic acid binding domain protein [Aciduliprofundum
boonei T469]
gi|197623762|gb|EDY36325.1| OB-fold nucleic acid binding domain protein [Aciduliprofundum
boonei T469]
Length = 137
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 35 IKDLHVGIKNVNVTCIVLDI-SPR---VTLKENREVRTLKVADSTACINLSLWDEPGALL 90
IKDL+ K VNV VL P+ E + V V D T I +SLW+E ++
Sbjct: 7 IKDLNPNAKRVNVLAKVLHKGEPKEINTKYGETKHVTEAVVGDETGTIIMSLWNEQADMI 66
Query: 91 HPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
G+ + + Y + R + L K G I+K E NE LDMS
Sbjct: 67 DEGETIYVDNGYISLVRGHMRLNVGKYGSIKKSEEELGEINEELDMS 113
>gi|222478550|ref|YP_002564787.1| replication factor A [Halorubrum lacusprofundi ATCC 49239]
gi|222451452|gb|ACM55717.1| nucleic acid binding OB-fold tRNA/helicase-type [Halorubrum
lacusprofundi ATCC 49239]
Length = 501
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 29 EAMDVY-IKDLHVGIKNVNVTCIVLDISPRVTLK-----ENREVRTLKVADSTACINLSL 82
+ +D Y ++DL +G +V++ VLD T E R V L V D T + ++L
Sbjct: 158 QVLDTYRVEDLSLGASDVDLVGQVLDTDSIRTFDRDDGSEGR-VANLTVGDETGRVRVTL 216
Query: 83 WDEPGALL---HPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
WD+ L+ G++V + Y + L L+ G +E++ E E D++
Sbjct: 217 WDDKADLVEEFEAGEVVEVGDGYVRERDGDLELHVGDRGTVERVDEDVEYVPETTDIA 274
>gi|435852505|ref|YP_007314091.1| single-stranded DNA-binding protein [Methanomethylovorans
hollandica DSM 15978]
gi|433663135|gb|AGB50561.1| single-stranded DNA-binding protein [Methanomethylovorans
hollandica DSM 15978]
Length = 375
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 14 NHGMRAERKEINRKKEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTL 69
N+GM A E + K + V I ++ G+ N+NV +LDIS T + V +
Sbjct: 149 NNGMIAHTDEDIQVKNS-SVKISEIKDGMGNINVIGRLLDISDTRTFNKKDGSKGRVGNI 207
Query: 70 KVADSTACINLSLWDEPG---ALLHPGDIVRLTKCYAQ 104
+ D T I ++LWD+ LHPGD V + YA+
Sbjct: 208 TIGDDTGKIRITLWDDKTDKMTELHPGDAVEVINGYAR 245
>gi|448356409|ref|ZP_21545142.1| replication factor A [Natrialba chahannaoensis JCM 10990]
gi|445653442|gb|ELZ06313.1| replication factor A [Natrialba chahannaoensis JCM 10990]
Length = 490
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 31 MDVYIKDLH------VGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINL 80
+DV + D H +G+ NVN+ +VLD T + +V L + DST + +
Sbjct: 154 VDVQVSDTHTVESLSLGLSNVNLVGLVLDTGTVRTFDRDDGSEGKVSNLVLGDSTGRVRV 213
Query: 81 SLWDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
+LWDE L + G V + Y + L L+ G +E++
Sbjct: 214 TLWDEQADLATEIETGTTVEVVDGYVKERDGSLELHVGNRGAVEEV 259
>gi|16082165|ref|NP_394606.1| single-stranded DNA-binding protein [Thermoplasma acidophilum DSM
1728]
gi|10640460|emb|CAC12274.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 147
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLK----ENREVRTLKVADSTACINLSLWDEPGALL 90
IKDL + VNV VL + T++ + R V + + D T + LSLW + +
Sbjct: 7 IKDLTPSSRRVNVVGKVLSVGEPKTIQTKFGDQRSVTEVTIGDDTGKVILSLWGDQASQA 66
Query: 91 HPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
G+ + + Y + R + L K G + E NE+ D S
Sbjct: 67 RAGETLAIGNGYVSLVRGHIRLNVGKYGSLSVSDEEVTEVNEDFDAS 113
>gi|329766730|ref|ZP_08258273.1| nucleic acid binding OB-fold tRNA/helicase-type [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329136985|gb|EGG41278.1| nucleic acid binding OB-fold tRNA/helicase-type [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 465
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENRE----VRTLKVADSTACINLSLWDEP 86
+++ +KDL+ G K +++ VL++SP +RT+ V D+ + ++ LWD+
Sbjct: 62 VEMGLKDLYAGAKEISLETRVLNVSPAKQFSRKDGSPFYLRTMTVYDTNSTASVKLWDDK 121
Query: 87 GAL-----LHPGDIVRLTKCYAQ 104
L + PGD++++ K Y +
Sbjct: 122 ANLPGIEDIKPGDLIKIIKAYVK 144
>gi|348676351|gb|EGZ16169.1| hypothetical protein PHYSODRAFT_506802 [Phytophthora sojae]
Length = 144
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 35 IKDLHVGI--KNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+KDL + K +NV IVL+ + + + TL V D + C++L L +
Sbjct: 15 VKDLSPALCNKEINVKAIVLESNAKDEANASNNA-TLLVGDDSGCVSLVLPKTAALHVRL 73
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
GDI++L + N + L+ K +E++GEF ++F E+ ++S
Sbjct: 74 GDILQLASTQLVLKSNRVYLWGGK---VERVGEFLLLFKESANIS 115
>gi|20089479|ref|NP_615554.1| replication factor A [Methanosarcina acetivorans C2A]
gi|19914385|gb|AAM04034.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 450
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 35 IKDLHVGIKNVNVTCIVLD-----ISPRVTLKEN-REVRTLKVADSTACINLSLWDE-PG 87
+KDL +KN+ +T +LD I P+ ++E+ + T +AD T + S W E PG
Sbjct: 58 VKDLSASLKNIEITGRILDLGEKAIRPQEGVQESPSRLYTGVLADETGSVMFSSWKELPG 117
Query: 88 ALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLI 120
++ GD++ + Y ++W+N + L + L+
Sbjct: 118 SI---GDVLNIRNAYTRLWQNRIRLSIGEQSLV 147
>gi|340343954|ref|ZP_08667086.1| Nucleic acid binding OB-fold tRNA/helicase-type [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519095|gb|EGP92818.1| Nucleic acid binding OB-fold tRNA/helicase-type [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 465
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 49/83 (59%), Gaps = 9/83 (10%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISP--RVTLKENRE--VRTLKVADSTACINLSLWDEP 86
+++ +KDL+ G K +++ VL++SP + + K+ +RT+ V D+ + ++ LWD+
Sbjct: 62 VEMGLKDLYAGAKEISLETRVLNVSPAKQFSRKDGSPFYLRTMTVYDTNSTASVKLWDDK 121
Query: 87 GAL-----LHPGDIVRLTKCYAQ 104
L + PGD++++ K Y +
Sbjct: 122 ANLPGIENIKPGDLIKIIKAYVK 144
>gi|73668957|ref|YP_304972.1| replication factor A [Methanosarcina barkeri str. Fusaro]
gi|72396119|gb|AAZ70392.1| replication factor-A protein 1 [Methanosarcina barkeri str. Fusaro]
Length = 441
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 35 IKDLHVGIKNVNVTCIVLD-----ISPRVTLKEN-REVRTLKVADSTACINLSLWDE-PG 87
+KDL +KN +T +LD I P+ +E + T +AD T + S W E PG
Sbjct: 58 VKDLSANLKNFELTGRILDLGEKSIRPQAGAQEKPSRLYTGVLADETGAVLFSSWKELPG 117
Query: 88 ALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGE 125
++ GD++ + Y +IW+N + L + + KI +
Sbjct: 118 SM---GDVINIKNAYTRIWQNRIRLSIGEQSPVSKISD 152
>gi|435845667|ref|YP_007307917.1| single-stranded DNA-binding protein [Natronococcus occultus SP4]
gi|433671935|gb|AGB36127.1| single-stranded DNA-binding protein [Natronococcus occultus SP4]
Length = 496
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 31 MDVYIKDLH------VGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINL 80
+DV I D H +G+ +VN+ +VLD T + +V L V D+T I +
Sbjct: 164 IDVQISDTHTVEALSLGLSSVNLVGVVLDTDSVRTFDRDDGSEGKVANLVVGDATGRIRV 223
Query: 81 SLWDEPG---ALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
++WDE GD V + Y + L L+ G IE +
Sbjct: 224 TMWDERAEQVTAFETGDTVEVIDGYVRERDGSLELHVGNRGAIEDV 269
>gi|448476279|ref|ZP_21603443.1| replication factor A [Halorubrum aidingense JCM 13560]
gi|445815828|gb|EMA65747.1| replication factor A [Halorubrum aidingense JCM 13560]
Length = 488
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 29 EAMDVY-IKDLHVGIKNVNVTCIVLDISPRVTLK-----ENREVRTLKVADSTACINLSL 82
+ +D Y ++DL +G ++++ VLD T E R V L V D T + ++L
Sbjct: 157 QVLDTYRVEDLSLGASDIDLVGQVLDTDSVRTFDRDDGSEGR-VANLTVGDETGRVRVTL 215
Query: 83 WDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
WD+ L G++V + Y + L L+ G +E++ E E D++
Sbjct: 216 WDDKADLADEFAAGEVVEVGDGYVRERNGDLELHVGDRGTVERVDEDVEYVPETTDIA 273
>gi|170289718|ref|YP_001736534.1| single-stranded DNA-binding protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170173798|gb|ACB06851.1| Single-stranded DNA-binding replication protein A (RPA), large (70
kD) subunit or related ssDNA-binding protein [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 142
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLK---VADSTACINLSLWDEPGALLH 91
+ DL G +VNV VL++ ++ R RTL V D T + L LW + L
Sbjct: 7 VLDLRPGENSVNVKVRVLEVGESRVVETKRGPRTLSEATVGDETGRVVLVLWGDHAGKLK 66
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSA 151
G +V+L + ++R + L + +G F +E + +P + PQ++
Sbjct: 67 EGKVVQLQNAFTTVYREKVQLN------LGNMGSFVETDDEGF---VKAEEIPEDMPQAS 117
Query: 152 N 152
Sbjct: 118 G 118
>gi|73668500|ref|YP_304515.1| replication factor A [Methanosarcina barkeri str. Fusaro]
gi|72395662|gb|AAZ69935.1| replication factor-A protein [Methanosarcina barkeri str. Fusaro]
Length = 484
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 18/103 (17%)
Query: 14 NHGMRAERKEINRKKEAMDVY-----IKDLHVGIKNVNVTCIVLDISPRVTLKE----NR 64
N+G+ AE +E +DV IKD+ G+ ++N+T VL+IS T + +
Sbjct: 149 NNGVLAE------SEEEIDVAANNQKIKDIKDGMGDLNLTGKVLEISEVRTFQRKDGTSG 202
Query: 65 EVRTLKVADSTACINLSLWDEPGALLHP---GDIVRLTKCYAQ 104
+V L + DST + ++LWD+ L+ GD V L YA+
Sbjct: 203 KVGNLLLGDSTGTVRVTLWDDRTEFLNQIEYGDTVELVNAYAR 245
>gi|448366510|ref|ZP_21554633.1| replication factor A [Natrialba aegyptia DSM 13077]
gi|445653965|gb|ELZ06821.1| replication factor A [Natrialba aegyptia DSM 13077]
Length = 494
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 32 DVY-IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEP 86
D Y +++L +G+ NVN+ +VLD T + +V L + DST + ++LWD+
Sbjct: 160 DTYTVENLSLGLSNVNLVGLVLDTDTVRTFDRDDGSEGKVSNLVLGDSTGRVRVTLWDDQ 219
Query: 87 GAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
L L + V + Y + L L+ G +E + E S PI NL
Sbjct: 220 ADLATELEADETVEVVDGYVRERDGSLELHVGNRGAVETVDADIEYVPE----STPIENL 275
Query: 144 PVN 146
+
Sbjct: 276 EIG 278
>gi|448320473|ref|ZP_21509960.1| replication factor A [Natronococcus amylolyticus DSM 10524]
gi|445605938|gb|ELY59853.1| replication factor A [Natronococcus amylolyticus DSM 10524]
Length = 476
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 31 MDVYIKDLH------VGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINL 80
+DV + D+H +G+ +VN+ +VLD T + +V L V DST I +
Sbjct: 154 IDVQVSDVHTVEALSLGLSSVNLVGVVLDTDTIRTFDRDDGSEGKVANLVVGDSTGRIRV 213
Query: 81 SLWDEPGALL---HPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
++WDE + GD + + Y + L L+ G +E + E S
Sbjct: 214 TMWDERAEQVTEFEAGDTLEVVDGYVRERDGSLELHVGNRGALEAVDADVEYVPE----S 269
Query: 138 IPIPNLPVN 146
+PI ++ +
Sbjct: 270 VPIEDVEIG 278
>gi|289581867|ref|YP_003480333.1| OB-fold tRNA/helicase-type nucleic acid binding protein [Natrialba
magadii ATCC 43099]
gi|289531420|gb|ADD05771.1| nucleic acid binding OB-fold tRNA/helicase-type [Natrialba magadii
ATCC 43099]
Length = 492
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 31 MDVYIKDLH------VGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINL 80
+DV + D H +G+ NVN+ +VLD T + +V L + DS+ + +
Sbjct: 159 VDVQVSDTHTVESLSLGLSNVNLVGLVLDTGTVRTFDRDDGSEGKVSNLVLGDSSGRVRV 218
Query: 81 SLWDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
+LWDE L + G V + Y + L L+ G +E++
Sbjct: 219 TLWDEQADLATEIEAGTTVEVVDGYVKERDGSLELHVGNRGAVEEV 264
>gi|448282722|ref|ZP_21474006.1| replication factor A [Natrialba magadii ATCC 43099]
gi|445575686|gb|ELY30154.1| replication factor A [Natrialba magadii ATCC 43099]
Length = 487
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 31 MDVYIKDLH------VGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINL 80
+DV + D H +G+ NVN+ +VLD T + +V L + DS+ + +
Sbjct: 154 VDVQVSDTHTVESLSLGLSNVNLVGLVLDTGTVRTFDRDDGSEGKVSNLVLGDSSGRVRV 213
Query: 81 SLWDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
+LWDE L + G V + Y + L L+ G +E++
Sbjct: 214 TLWDEQADLATEIEAGTTVEVVDGYVKERDGSLELHVGNRGAVEEV 259
>gi|305663511|ref|YP_003859799.1| OB-fold tRNA/helicase-type nucleic acid binding-protein
[Ignisphaera aggregans DSM 17230]
gi|304378080|gb|ADM27919.1| nucleic acid binding OB-fold tRNA/helicase-type [Ignisphaera
aggregans DSM 17230]
Length = 143
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLK---VADSTACINLSLWDEPGALLH 91
I +L G++N+N VL+ T+ RTL V D T + L +W L
Sbjct: 8 IINLKPGMENINTAVRVLEALGTRTIDTKAGTRTLGEYIVGDDTGRVKLVVWGSKAGSLA 67
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSA 151
GD+V + + +++ + L + K+ IEK+ + D P +P +P++
Sbjct: 68 SGDVVEIRNAWVTVFKGEVQLNAGKNSSIEKLSD---------DAVPPADAIPDESPKAE 118
Query: 152 NGNSNP 157
G P
Sbjct: 119 GGAMPP 124
>gi|399575764|ref|ZP_10769522.1| single-stranded DNA-binding protein [Halogranum salarium B-1]
gi|399240032|gb|EJN60958.1| single-stranded DNA-binding protein [Halogranum salarium B-1]
Length = 492
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 29 EAMDVY-IKDLHVGIKNVNVTCIVLDISPRVTLK-----ENREVRTLKVADSTACINLSL 82
+ +D Y ++DL +G+ +VN+ VLD S T E R V L V D T + ++L
Sbjct: 159 QVLDTYRVEDLSLGLSDVNLKGKVLDTSEIRTFDRDDGSEGR-VANLTVGDETGRVRVTL 217
Query: 83 WDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDM 136
WDE L G V + Y + L L+ G +E++ E + D+
Sbjct: 218 WDEQADRADELATGVTVEVVDGYVRERDGSLELHVGSRGAVEELDEEVQYVPDTADI 274
>gi|429216813|ref|YP_007174803.1| OB-fold nucleic acid binding protein [Caldisphaera lagunensis DSM
15908]
gi|429133342|gb|AFZ70354.1| OB-fold nucleic acid binding protein [Caldisphaera lagunensis DSM
15908]
Length = 169
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 35 IKDLHVGIKNVNVTCIVLDI-SPRV--TLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ DL G NV++ VL + P+V T + +R + V D + I L++W ++
Sbjct: 8 VSDLREGEDNVSIKVRVLSVDEPKVIHTKRGDRTISEAIVGDESGRIKLTMWGNQAGKIN 67
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP-NLPVNAPQS 150
GD + L + ++ + L G I KI E S+P P ++P N P++
Sbjct: 68 EGDAIELKGAWTTSFKGDVQLNIGSRGEINKIDEG----------SLPKPEDIPENTPKA 117
Query: 151 A 151
+
Sbjct: 118 S 118
>gi|118431409|ref|NP_147870.2| ssDNA-binding protein [Aeropyrum pernix K1]
gi|116062732|dbj|BAA80315.2| single-stranded DNA binding protein [Aeropyrum pernix K1]
Length = 151
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 9/126 (7%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLK---VADSTACINLSLWDEPGALLH 91
I DL G++NV+++ VL+ ++ R TL V D + + ++LW L
Sbjct: 8 IMDLREGLRNVSISGRVLETGEPKMVETKRGPATLSEAVVGDESGRVKVTLWGSHAGTLK 67
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSA 151
G+ VR+ + +R + + + IEK V +E++ + IP A
Sbjct: 68 EGEAVRIEGAWTTSYRGKVQVNVGRESTIEK------VDSEDVPQAEDIPEEMPEAQYRG 121
Query: 152 NGNSNP 157
G P
Sbjct: 122 FGQRQP 127
>gi|269986526|gb|EEZ92811.1| nucleic acid binding OB-fold tRNA/helicase-type [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 94
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPR---VTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
I +L G+ +++++ V++I +T + +V T K+ D + LSLW + +
Sbjct: 3 ISELRDGMSDIDLSAEVVEIGEAREVMTKFGSNKVATAKIKDDSGECKLSLWGKQIEMFS 62
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
GD V ++K Y Q +R+ L + K+G I K+
Sbjct: 63 VGDNVEISKGYVQSFRDELQVNVGKAGSIRKL 94
>gi|13542067|ref|NP_111755.1| single-stranded DNA-binding protein [Thermoplasma volcanium GSS1]
gi|14325498|dbj|BAB60402.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 145
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLK----ENREVRTLKVADSTACINLSLWDEPGALL 90
IKDL + VNV VL + T++ + R V + + D T + LSLW + A
Sbjct: 7 IKDLTPSSRRVNVLGKVLSVGEPKTIQTKFGDQRSVTEVTIGDDTGKVILSLWGDQAAQA 66
Query: 91 HPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
GD + + Y + R + L K G + E NE+ D S
Sbjct: 67 KTGDTLMIGNGYVSLVRGHIRLNVGKYGSLTVSDEEVDEVNESYDAS 113
>gi|407461589|ref|YP_006772906.1| OB-fold tRNA/helicase-type nucleic acid binding-protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045211|gb|AFS79964.1| OB-fold tRNA/helicase-type nucleic acid binding-protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 466
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 14/86 (16%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISP--RVTLKENRE--VRTLKV---ADSTACINLSLW 83
+++ +KDL+ G K +++ VL++SP + + K+ +RT+ V A+STA + LW
Sbjct: 62 IEMSLKDLYAGAKEISLETRVLNLSPAKQFSRKDGSPFYLRTMTVYDDANSTASVK--LW 119
Query: 84 DEPGAL-----LHPGDIVRLTKCYAQ 104
DE L L PGD++++ K Y +
Sbjct: 120 DEKANLPGIENLKPGDLIKIIKAYVK 145
>gi|124027704|ref|YP_001013024.1| single-stranded DNA-binding protein [Hyperthermus butylicus DSM
5456]
gi|123978398|gb|ABM80679.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
Length = 139
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 26 RKKEAMDVYIKDLHVGIKNVNVTCIVLDI-SPRV--TLKENREVRTLKVADSTACINLSL 82
R ++ V I +L G+ NV V VL+ +PRV T + R + V D T + L+L
Sbjct: 2 RSQKETPVKISELKPGMDNVTVRVRVLEAEAPRVIETRRGPRTISEAVVGDETGRVKLTL 61
Query: 83 WDEPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
W L G+ V + + +R + L G I ++
Sbjct: 62 WGRAAGTLSEGEAVEIQGAWTTNYRGNVVLNVGGRGGIRRL 102
>gi|20093424|ref|NP_619499.1| replication factor A [Methanosarcina acetivorans C2A]
gi|19918797|gb|AAM07979.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 484
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEPGALL 90
IKD+ G+ ++N+T VL+IS T + +V L + D T + ++LWDE L
Sbjct: 169 IKDIKDGMGDLNLTGKVLEISEIRTFQRKDGSGGKVGNLLIGDETGTLRVTLWDEKTDFL 228
Query: 91 HP---GDIVRLTKCYAQ 104
+ GD V L YA+
Sbjct: 229 NQLEYGDTVELINAYAR 245
>gi|294494712|ref|YP_003541205.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanohalophilus
mahii DSM 5219]
gi|292665711|gb|ADE35560.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanohalophilus
mahii DSM 5219]
Length = 374
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKE----NREVRTLKVADSTACINLSLWD---EPG 87
I D+ G +VNV +VLD+S T ++ VR + + D T I ++LWD E
Sbjct: 169 ISDIKDGDSDVNVVGMVLDVSDVRTFQKRDGSQGRVRNITIGDETGKIRITLWDGRTELA 228
Query: 88 ALLHPGDIVRLTKCYAQI 105
L GD V + YA++
Sbjct: 229 DKLENGDSVEIINGYARL 246
>gi|433592623|ref|YP_007282119.1| single-stranded DNA-binding protein [Natrinema pellirubrum DSM
15624]
gi|433307403|gb|AGB33215.1| single-stranded DNA-binding protein [Natrinema pellirubrum DSM
15624]
Length = 499
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 32 DVY-IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEP 86
D Y I+DL +G+ NVN+ ++LD T + +V L + DST I ++LWDE
Sbjct: 165 DTYAIEDLSLGLSNVNLVGLLLDTDSVRTFDRDDGSEGKVSNLVLGDSTGRIRVTLWDER 224
Query: 87 GAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSG 118
L L G V + Y + L L+ G
Sbjct: 225 ADLATELEAGTTVEVVDGYVKERDGQLELHVGNRG 259
>gi|21227853|ref|NP_633775.1| replication factor A [Methanosarcina mazei Go1]
gi|452210332|ref|YP_007490446.1| Replication factor-A protein 1 [Methanosarcina mazei Tuc01]
gi|20906266|gb|AAM31447.1| Replication factor-A protein 1 [Methanosarcina mazei Go1]
gi|452100234|gb|AGF97174.1| Replication factor-A protein 1 [Methanosarcina mazei Tuc01]
Length = 453
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVR-------TLKVADSTACINLSLWDE-P 86
+KDL +KN +T +LD+ + L+ V+ T +AD T + S W E P
Sbjct: 58 VKDLSASLKNFEITGRILDMGEK-ALRPQEGVQDGPSKLYTGILADETGSVMFSSWKELP 116
Query: 87 GALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGE 125
G++ GD++ + Y ++W+N + L + L+ + +
Sbjct: 117 GSI---GDVINIKNAYTRLWQNRIRLSIGEQSLVSGVSD 152
>gi|322370189|ref|ZP_08044751.1| replication factor A [Haladaptatus paucihalophilus DX253]
gi|320550525|gb|EFW92177.1| replication factor A [Haladaptatus paucihalophilus DX253]
Length = 494
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLK-----ENREVRTLKVADSTACINLSLWDE---P 86
+ DL +G+ +VN+ +LD T E R V L V D T I ++LWDE
Sbjct: 165 VSDLSLGLSDVNLQGKLLDTGTVRTFDRDDGSEGR-VANLTVGDETGRIRITLWDERADA 223
Query: 87 GALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
L PG V + Y + L L+ G +E+I
Sbjct: 224 AEELDPGIAVEIVDGYVRERDGNLELHVGNRGAVEEI 260
>gi|303388131|ref|XP_003072300.1| hypothetical protein Eint_010780 [Encephalitozoon intestinalis ATCC
50506]
gi|303301439|gb|ADM10940.1| hypothetical protein Eint_010780 [Encephalitozoon intestinalis ATCC
50506]
Length = 111
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 43 KNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCY 102
KN+++ I++ K+N ++ V D T + +W+ L+PGD++ L+ Y
Sbjct: 12 KNISLEFILIKYLETNKTKDNDKIDVWLVGDETGTMEFGIWN---CSLNPGDVIYLSGGY 68
Query: 103 AQIWRNCLTLYSSKSGLIEKIGEFCMVF 130
+++ L+ SK+G I ++ F F
Sbjct: 69 TSLFQGSKRLFVSKTGWISRVRTFRKTF 96
>gi|448384116|ref|ZP_21563114.1| replication factor A [Haloterrigena thermotolerans DSM 11522]
gi|445659105|gb|ELZ11917.1| replication factor A [Haloterrigena thermotolerans DSM 11522]
Length = 495
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 32 DVY-IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEP 86
D Y I+DL +G+ NVN+ ++LD T + +V L + DST I ++LWDE
Sbjct: 160 DTYAIEDLSLGLSNVNLVGLLLDTDSVRTFDRDDGSEGKVSNLVLGDSTGRIRVTLWDER 219
Query: 87 GAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSG 118
L L G V + Y + L L+ G
Sbjct: 220 ADLATELEAGTTVEVVDGYVKERDGQLELHVGNRG 254
>gi|448335061|ref|ZP_21524213.1| replication factor A [Natrinema pellirubrum DSM 15624]
gi|445617997|gb|ELY71581.1| replication factor A [Natrinema pellirubrum DSM 15624]
Length = 494
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 32 DVY-IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEP 86
D Y I+DL +G+ NVN+ ++LD T + +V L + DST I ++LWDE
Sbjct: 160 DTYAIEDLSLGLSNVNLVGLLLDTDSVRTFDRDDGSEGKVSNLVLGDSTGRIRVTLWDER 219
Query: 87 GAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSG 118
L L G V + Y + L L+ G
Sbjct: 220 ADLATELEAGTTVEVVDGYVKERDGQLELHVGNRG 254
>gi|383620357|ref|ZP_09946763.1| replication factor A [Halobiforma lacisalsi AJ5]
gi|448695765|ref|ZP_21697514.1| replication factor A [Halobiforma lacisalsi AJ5]
gi|445784219|gb|EMA35036.1| replication factor A [Halobiforma lacisalsi AJ5]
Length = 487
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 32 DVY-IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEP 86
D Y ++DL +G+ NVN+ +VLD T + +V + + DST I ++LWDE
Sbjct: 160 DTYDVEDLSLGLSNVNLVGLVLDTDSVRTFDRDDGSEGKVSNVTLGDSTGRIRVTLWDEQ 219
Query: 87 GAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLI 120
L G V + Y + L L+ G I
Sbjct: 220 AETAEELEAGTTVEVVDGYVRERDGNLELHVGNRGAI 256
>gi|448388091|ref|ZP_21565031.1| replication factor A [Haloterrigena salina JCM 13891]
gi|445670742|gb|ELZ23339.1| replication factor A [Haloterrigena salina JCM 13891]
Length = 487
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 31 MDVYIKDLH------VGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINL 80
+DV + D H +G+ NVN+ +VLD T + +V L + D T I +
Sbjct: 154 IDVQVSDTHTVEALSLGLSNVNLVGLVLDTDSVRTFDRDDGSEGKVSNLVLGDETGRIRV 213
Query: 81 SLWDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSG 118
+LWDE L PG+ V + Y + L L+ G
Sbjct: 214 TLWDEQADLATEFDPGETVEVIDGYVKERDGNLELHVGNRG 254
>gi|70606760|ref|YP_255630.1| single-stranded DNA-binding protein [Sulfolobus acidocaldarius DSM
639]
gi|449066984|ref|YP_007434066.1| single-stranded DNA-binding protein [Sulfolobus acidocaldarius N8]
gi|449069256|ref|YP_007436337.1| single-stranded DNA-binding protein [Sulfolobus acidocaldarius
Ron12/I]
gi|68567408|gb|AAY80337.1| single strand DNA binding protein [Sulfolobus acidocaldarius DSM
639]
gi|449035492|gb|AGE70918.1| single-stranded DNA-binding protein [Sulfolobus acidocaldarius N8]
gi|449037764|gb|AGE73189.1| single-stranded DNA-binding protein [Sulfolobus acidocaldarius
Ron12/I]
Length = 146
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 35 IKDLHVGIKNVNVTCIVLDIS-PRVTLKEN--REVRTLKVADSTACINLSLWDEPGALLH 91
+ L G++NVN+T V++ S PRV +N R + V D T I L+LW +
Sbjct: 5 VNSLKPGMENVNITVRVIEASEPRVIQTKNGTRTISEAVVGDETGRIKLTLWGNLAGTIK 64
Query: 92 PGDIVRLTKCYAQIWRNCLTL-YSSKSGLIE 121
G ++++ + ++ + L SKS + E
Sbjct: 65 SGSVIKIANAWTTAYKGKVQLNAGSKSNVSE 95
>gi|284163709|ref|YP_003401988.1| OB-fold tRNA/helicase-type nucleic acid binding-protein
[Haloterrigena turkmenica DSM 5511]
gi|284013364|gb|ADB59315.1| nucleic acid binding OB-fold tRNA/helicase-type [Haloterrigena
turkmenica DSM 5511]
Length = 487
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 31 MDVYIKDLH------VGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINL 80
+DV + D H +G+ NVN+ +VLD T + +V L + D T I +
Sbjct: 154 IDVQVSDTHTVEALSLGLSNVNLVGLVLDTDSVRTFDRDDGSEGKVSNLVLGDETGRIRV 213
Query: 81 SLWDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSG 118
+LWDE L PG+ V + Y + L L+ G
Sbjct: 214 TLWDEQADLATEFDPGETVEVIDGYVKERDGNLELHVGNRG 254
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEPGAL- 89
I+DL +G + V++ +V P+ T + +VR ++V D+T I +++W E L
Sbjct: 272 IEDLEIG-QTVDIAGVVRSADPKRTFDRDDGSEGQVRNIRVQDATGDIRVAMWGEKADLD 330
Query: 90 LHPGDIVRLTKCYAQI-WRNCL 110
+ PGD V L Q W++ L
Sbjct: 331 VGPGDEVALGDVEIQDGWQDDL 352
>gi|282165660|ref|YP_003358045.1| single-stranded DNA-binding replication protein [Methanocella
paludicola SANAE]
gi|282157974|dbj|BAI63062.1| single-stranded DNA-binding replication protein [Methanocella
paludicola SANAE]
Length = 372
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 16/130 (12%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISP--RVTLKENREVRT--LKVADSTACINLSLWDEPGA 88
+ IK++ + KNV V S + + + E R L VAD T + L LWDE
Sbjct: 56 IKIKEITLDKKNVQFIAKVTGASDVRKFSRNDGSEGRVCNLTVADETGEVTLVLWDELAD 115
Query: 89 LLHPGDI----VRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLP 144
+ GDI V Y + + + + K G I+K +E+ +++ P +P
Sbjct: 116 AVMTGDIKEGDVLKISGYVKEGQRGMEVSIGKGGGIQK--------DESTKITVKDPMIP 167
Query: 145 VNAPQSANGN 154
+ Q NGN
Sbjct: 168 IKGVQMGNGN 177
>gi|448363794|ref|ZP_21552390.1| replication factor A [Natrialba asiatica DSM 12278]
gi|445645676|gb|ELY98676.1| replication factor A [Natrialba asiatica DSM 12278]
Length = 495
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 31 MDVYIKD------LHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINL 80
+DV I D L +G+ NVN+ +VLD T + +V L + DST + +
Sbjct: 154 IDVQISDTYTVESLSLGLSNVNLVGLVLDTDTVRTFDRDDGSEGKVSNLVLGDSTGRVRV 213
Query: 81 SLWDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
+LWD+ L L + V + Y + L L+ G +E + E S
Sbjct: 214 TLWDDQADLATELEADETVEVVDGYVRERDGSLELHVGNRGAVETVDADIEYVPE----S 269
Query: 138 IPIPNLPVN 146
PI +L +
Sbjct: 270 TPIEDLEIG 278
>gi|448330773|ref|ZP_21520051.1| replication factor A [Natrinema versiforme JCM 10478]
gi|445610927|gb|ELY64691.1| replication factor A [Natrinema versiforme JCM 10478]
Length = 497
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 32 DVY-IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEP 86
D Y + DL +G+ NVN+ ++LD T + +V L + DST I ++LWDE
Sbjct: 160 DTYAVDDLSLGLSNVNLVGLLLDTDSVRTFDRDDGSEGKVSNLVLGDSTGRIRVTLWDEQ 219
Query: 87 GAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSG 118
L L G V + Y + L L+ G
Sbjct: 220 ADLATELEAGTTVEVIDGYVKERDGSLELHVGNRG 254
>gi|448350482|ref|ZP_21539295.1| replication factor A [Natrialba taiwanensis DSM 12281]
gi|445636752|gb|ELY89912.1| replication factor A [Natrialba taiwanensis DSM 12281]
Length = 498
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 32 DVY-IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEP 86
D Y ++ L +G+ NVN+ +VLD T + +V L + DST + ++LWD+
Sbjct: 160 DTYTVESLSLGLSNVNLVGLVLDTDTVRTFDRDDGSEGKVSNLVLGDSTGRVRVTLWDDQ 219
Query: 87 GAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
L L + V + Y + L L+ G +E + E S PI +L
Sbjct: 220 ADLATELEADETVEVVDGYVRERDGSLELHVGNRGAVETVDADIEYVPE----STPIEDL 275
Query: 144 PVN 146
+
Sbjct: 276 EIG 278
>gi|118577123|ref|YP_876866.1| single-stranded DNA-binding replication protein A, large (70 kD)
subunit [Cenarchaeum symbiosum A]
gi|118195644|gb|ABK78562.1| single-stranded DNA-binding replication protein A, large (70 kD)
subunit [Cenarchaeum symbiosum A]
Length = 468
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 20/104 (19%)
Query: 23 EINRKKEA---MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENRE------VRTLKVAD 73
E+N K +A DV IKDL G K+V++ +L++S T + +R+ +RT+ V D
Sbjct: 51 ELNVKLDAPARSDVVIKDLRAGAKDVSLEARMLNMSQ--TKEYSRKDGTPFKLRTMTVYD 108
Query: 74 S----TACINLSLWDEPGAL-----LHPGDIVRLTKCYAQIWRN 108
T ++ LWD+ L L PGD+V++ + Y + R+
Sbjct: 109 GDESGTKTASVKLWDDKANLEGIDSLGPGDLVKILRAYVRADRD 152
>gi|448307001|ref|ZP_21496902.1| replication factor A [Natronorubrum bangense JCM 10635]
gi|445596548|gb|ELY50633.1| replication factor A [Natronorubrum bangense JCM 10635]
Length = 483
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEPGAL- 89
++ L +G+ NVN+ +VLD T + +V L + DST + ++LWDE L
Sbjct: 164 VEALSLGLSNVNLVGLVLDTGSVRTFDRDDGSEGKVSNLTLGDSTGRVRVTLWDEQADLA 223
Query: 90 --LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVN 146
+ V + Y + L L+ G +E++ E E S PI + +
Sbjct: 224 TEIESNTTVEVIDGYVKERDGSLELHVGNRGAVEEVDEDVEYVPE----STPIEAVEIG 278
>gi|290559560|gb|EFD92889.1| nucleic acid binding OB-fold tRNA/helicase-type [Candidatus
Parvarchaeum acidophilus ARMAN-5]
Length = 104
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPR---VTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
I +L G+ +V++T + D+ +T + +V T + D + LSLW + +
Sbjct: 11 ISELRDGMSDVDLTAEITDMGESREVMTKFGSNKVATASIKDDSGECKLSLWGKQIEMFS 70
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
GD + ++K Y + +R+ L ++ K+G I+++
Sbjct: 71 AGDNIEISKGYVKSFRDELQVHVGKAGSIKEV 102
>gi|448297974|ref|ZP_21488008.1| replication factor A [Natronorubrum tibetense GA33]
gi|445592700|gb|ELY46886.1| replication factor A [Natronorubrum tibetense GA33]
Length = 489
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 31 MDVYIKDLH------VGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINL 80
+DV + D H +G+ NVN+ +VLD T + +V L + DST + +
Sbjct: 154 VDVQVADTHTVEALSLGLSNVNLVGLVLDTDSVRTFDRDDGSEGKVSNLVLGDSTGRVRV 213
Query: 81 SLWDEPGAL---LHPGDIVRLTKCYAQIWRNCLTLYSSKSG 118
+LWDE + PG V + Y + L L+ G
Sbjct: 214 TLWDEQADTATEIDPGSTVEVIDGYVKDRDGTLELHVGNRG 254
>gi|320100590|ref|YP_004176182.1| nucleic acid-binding OB-fold tRNA/helicase-type [Desulfurococcus
mucosus DSM 2162]
gi|319752942|gb|ADV64700.1| nucleic acid binding OB-fold tRNA/helicase-type [Desulfurococcus
mucosus DSM 2162]
Length = 155
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 35 IKDLHVGIKNVNVTCIVLDI-SPRVTLKEN--REVRTLKVADSTACINLSLWDEPGALLH 91
I DL G++ V+V V+ +PRV N R + + D T + +LW E L
Sbjct: 15 IMDLKPGMEKVSVKARVIKAEAPRVIRTRNGPRTISNAVLGDETGRVEATLWGEKAGTLK 74
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSA 151
GD V + + +R + L I + E + + ++ + IP AP +
Sbjct: 75 EGDAVEVHGAWTTEFRGKVQLN------IGRSSEVVRIDSGSVPEASEIPENSPTAPPGS 128
Query: 152 NGNSNP 157
G S P
Sbjct: 129 GGPSRP 134
>gi|161527601|ref|YP_001581427.1| OB-fold tRNA/helicase-type nucleic acid binding-protein
[Nitrosopumilus maritimus SCM1]
gi|160338902|gb|ABX11989.1| nucleic acid binding OB-fold tRNA/helicase-type [Nitrosopumilus
maritimus SCM1]
Length = 466
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 14/86 (16%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISP--RVTLKENRE--VRTLKV---ADSTACINLSLW 83
+++ +KDL+ G K +++ VL++SP + + K+ +RT+ V A+STA + LW
Sbjct: 62 VEMSLKDLYAGAKEISLETRVLNLSPAKQFSRKDGSPFYLRTMTVYDDANSTASVK--LW 119
Query: 84 DEPGAL-----LHPGDIVRLTKCYAQ 104
D+ L L PGD++++ K Y +
Sbjct: 120 DDKANLPGIENLKPGDLIKIIKAYVK 145
>gi|126466308|ref|YP_001041417.1| single-stranded DNA-binding protein [Staphylothermus marinus F1]
gi|126015131|gb|ABN70509.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Staphylothermus
marinus F1]
Length = 153
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLK---VADSTACINLSLWDEPGALLH 91
I DL G + V++T VL+ +P ++ + RT+ + D T +N +LW L
Sbjct: 17 IIDLKAGEEGVHITARVLETTPPKVIQTRKGPRTISNAVLGDKTGRVNATLWGSKAGTLE 76
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP----IPNLPVNA 147
G +V + + +R + + IG V NE D +P IP A
Sbjct: 77 EGKVVDIKGAWTTSYRGKVQI---------NIGRSTEV-NEVDDKEVPSAEEIPEDQPTA 126
Query: 148 PQS 150
P +
Sbjct: 127 PDT 129
>gi|33357645|pdb|1O7I|A Chain A, Crystal Structure Of A Single Stranded Dna Binding Protein
gi|33357646|pdb|1O7I|B Chain B, Crystal Structure Of A Single Stranded Dna Binding Protein
Length = 119
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLK---VADSTACINLSLWDEPG 87
M+ + +L +++VNVT VL+ S ++ VRT+ V D T + L+LW +
Sbjct: 1 MEEKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA 60
Query: 88 ALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNA 147
+ G +V++ + ++ + L +G KI E + S IP A
Sbjct: 61 GSIKEGQVVKIENAWTTAFKGQVQL---NAGSKTKIAEAS---EDGFPESSQIPENTPTA 114
Query: 148 PQ 149
PQ
Sbjct: 115 PQ 116
>gi|261403319|ref|YP_003247543.1| replication factor A [Methanocaldococcus vulcanius M7]
gi|261370312|gb|ACX73061.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanocaldococcus
vulcanius M7]
Length = 646
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 67 RTLKVADSTACINLSLWDEPGAL-LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
+ ++VAD++ I ++LWD+ + GD++++ + A+ W+N + L S+ I+K+
Sbjct: 106 KRIRVADASGAIRITLWDDLAETEVEKGDVIKVERARARKWKNNIELSSTSETKIKKL 163
>gi|301122117|ref|XP_002908785.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262099547|gb|EEY57599.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 141
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 24 INRKKEAMDVYIKDLHVGIKN--VNVTCIVLDISPRVTLKENREVRTLKVADSTACINLS 81
++ KK +KDL + N V+V IVL+ + + + T+ V D ++C++L
Sbjct: 1 MSTKKTLTLTRVKDLSPTLSNKEVHVKVIVLECNAKDEGNTSNNA-TMIVGDDSSCVSLV 59
Query: 82 LWDEPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
L + GDI++LT + N + L+ K +E++GEF ++F E+ ++S
Sbjct: 60 LPKTVALHVRLGDILQLTATQVVLKSNRIYLWGCK---VERVGEFLLLFKESNNIS 112
>gi|390363720|ref|XP_003730435.1| PREDICTED: SOSS complex subunit B1-like [Strongylocentrotus
purpuratus]
gi|390368557|ref|XP_003731474.1| PREDICTED: SOSS complex subunit B1-like [Strongylocentrotus
purpuratus]
Length = 132
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 80 LSLWDEPGALLHPGDIVRLTKCYAQIWRNCLTL------YSSKSGLIEKIGEFCMVFNEN 133
+SLWDE G ++ GDI+RLTK Y I+ L + ++S + + G N
Sbjct: 1 MSLWDELGEIVQSGDIIRLTKGYCMIFSETPNLSEPNPEFIAQSKINLQDGRSNSPTGNN 60
Query: 134 LDMSIPIPNLPVNAPQSANGNSNP-GNMN 161
++ PN P N + N P GNM+
Sbjct: 61 QGLAQQAPNKPSNGVRMGNSGVPPSGNMD 89
>gi|15899120|ref|NP_343725.1| single-stranded DNA-binding protein [Sulfolobus solfataricus P2]
gi|284173765|ref|ZP_06387734.1| single-stranded DNA-binding protein [Sulfolobus solfataricus 98/2]
gi|384432715|ref|YP_005642073.1| OB-fold tRNA/helicase-type nucleic acid binding-protein [Sulfolobus
solfataricus 98/2]
gi|13815667|gb|AAK42515.1| Single-stranded DNA binding protein (SSB) [Sulfolobus solfataricus
P2]
gi|261600869|gb|ACX90472.1| nucleic acid binding OB-fold tRNA/helicase-type [Sulfolobus
solfataricus 98/2]
Length = 148
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLK---VADSTACINLSLWDEPG 87
M+ + +L +++VNVT VL+ S ++ VRT+ V D T + L+LW +
Sbjct: 1 MEEKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA 60
Query: 88 ALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNA 147
+ G +V++ + ++ + L +G KI E + S IP A
Sbjct: 61 GSIKEGQVVKIENAWTTAFKGQVQL---NAGSKTKIAEAS---EDGFPESSQIPENTPTA 114
Query: 148 PQ 149
PQ
Sbjct: 115 PQ 116
>gi|315427202|dbj|BAJ48816.1| replication factor A1 [Candidatus Caldiarchaeum subterraneum]
gi|315427240|dbj|BAJ48853.1| replication factor A1 [Candidatus Caldiarchaeum subterraneum]
gi|343485818|dbj|BAJ51472.1| replication factor A1 [Candidatus Caldiarchaeum subterraneum]
Length = 142
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 47 VTCIVLDISPRVT-----LKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKC 101
V IV PRV E+R L +AD T I L LWD+ L++ GD +++
Sbjct: 20 VAKIVEKPEPRVVSSQYDQSEHRLTEAL-IADETGAITLVLWDDNIDLVNEGDSIKVVNG 78
Query: 102 YAQIWRNCLTLYSSKSGLIE 121
+ +++R + L K G IE
Sbjct: 79 FIKLFRGKMQLNLGKFGKIE 98
>gi|15920719|ref|NP_376388.1| single-stranded DNA-binding protein [Sulfolobus tokodaii str. 7]
gi|15621502|dbj|BAB65497.1| single-stranded DNA-binding protein [Sulfolobus tokodaii str. 7]
Length = 145
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLK---VADSTACINLSLWDEPGALLH 91
I +L G++NVNVT VL+ + ++ RT+ V D T + L+LW + +
Sbjct: 6 INNLKPGMENVNVTVRVLEATEAKVIQTKNGARTISEAIVGDDTGRVKLTLWGKLAGSIK 65
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
G +V++ + ++ + L + I ++
Sbjct: 66 EGMVVKIDNAWTTAYKGKVQLNAGSKSQISEV 97
>gi|255513394|gb|EET89660.1| nucleic acid binding OB-fold tRNA/helicase-type [Candidatus
Micrarchaeum acidiphilum ARMAN-2]
Length = 123
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLK-ENREVRT-----LKVA-----DSTACINLSLW 83
I +L G NV V +VT K E REV T L VA D T I++SLW
Sbjct: 3 ISELKAGASNVEVEA-------KVTQKDEPREVVTKYGKRLSVANITLKDDTGSISMSLW 55
Query: 84 DEPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
+ ++ GD+V++T Y +R L + K G +E +
Sbjct: 56 GKDIDSVNVGDVVKITNGYVNEFRGTPQLSTGKFGKLEVV 95
>gi|167535300|ref|XP_001749324.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772190|gb|EDQ85845.1| predicted protein [Monosiga brevicollis MX1]
Length = 858
Score = 38.9 bits (89), Expect = 2.1, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 121 EKIGEFCMVFNENLDMSIPIPNLPVNAPQSANGNSNPGNMNNSGNNKGNMRPNPIDRDVN 180
EKI +F + N D S+ + P++ PQ A+ S +++ + + P D +++
Sbjct: 413 EKIKDFVLNTPANADESVGLHAPPLSLPQPADTTSGSSDVDLARS------PQSGDANLS 466
Query: 181 RYSNNPDKGSSSSTQNTW 198
R ++ P G+S+S+ N+W
Sbjct: 467 RTTSQPQDGTSASSLNSW 484
>gi|15679384|ref|NP_276501.1| replication factor A [Methanothermobacter thermautotrophicus str.
Delta H]
gi|2622495|gb|AAB85862.1| replication factor A related protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 622
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEPGA 88
V I DLH ++NV V +V ++ V + N V+++++AD T ++LWDE
Sbjct: 290 VKIGDLH-EMRNVTVMGLVTKVNDPVEFERNDGTTGSVKSIEIADDTGSARVTLWDEDTR 348
Query: 89 L-LHPGDIVRLTKCYAQ 104
+ ++ GDI+R++ +
Sbjct: 349 IKINKGDIIRISGANVE 365
>gi|401825167|ref|XP_003886679.1| hypothetical protein EHEL_010750 [Encephalitozoon hellem ATCC
50504]
gi|395459824|gb|AFM97698.1| hypothetical protein EHEL_010750 [Encephalitozoon hellem ATCC
50504]
Length = 111
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 43 KNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCY 102
KN+ + I++ K+N ++ + D + I +W+ L PGD++ L+ Y
Sbjct: 12 KNICLEFILIKYLETNKTKDNDKIDVWLIGDESGTIEFGVWN---CSLSPGDVMYLSGGY 68
Query: 103 AQIWRNCLTLYSSKSGLIEKIGEFCMVFNEN 133
+++ L+ SK+G I ++ F VF N
Sbjct: 69 TSLFQGKRRLFISKTGCINRVRTFRKVFKVN 99
>gi|85691047|ref|XP_965923.1| hypothetical protein ECU01_0880 [Encephalitozoon cuniculi GB-M1]
gi|449329847|gb|AGE96116.1| hypothetical protein ECU01_0880 [Encephalitozoon cuniculi]
Length = 118
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 43 KNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCY 102
KN+ + I++ K+N ++ V D + I +W+ L+PGD++ L+ Y
Sbjct: 19 KNICLEFILIKYLEANKTKDNDKIDVWLVGDESGTIEFGVWN---CSLNPGDVIHLSGGY 75
Query: 103 AQIWRNCLTLYSSKSGLIEKIGEFCMVF 130
+++ L+ SK+G + ++ F F
Sbjct: 76 TSLFQGKKRLFVSKAGWVSRVRTFRKTF 103
>gi|429191281|ref|YP_007176959.1| single-stranded DNA-binding protein [Natronobacterium gregoryi SP2]
gi|429135499|gb|AFZ72510.1| single-stranded DNA-binding protein [Natronobacterium gregoryi SP2]
Length = 481
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 32 DVY-IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWD-- 84
D Y ++DL +G+ NVN+ +VLD T + +V + + DST + ++LWD
Sbjct: 170 DTYSVEDLSLGLSNVNLVGLVLDTDSVRTFDRDDGSEGKVSNVTLGDSTGRVRVTLWDEQ 229
Query: 85 -EPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
E L P V + Y + L L+ G IE + E E + S PI +
Sbjct: 230 AELAEELEPDATVEVVDGYVRERDGNLELHVGNRGAIETVDEEV----EYVPDSTPIEGV 285
Query: 144 PVN 146
+
Sbjct: 286 EIG 288
>gi|392513045|emb|CAD24958.2| hypothetical protein [Encephalitozoon cuniculi GB-M1]
Length = 111
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 43 KNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCY 102
KN+ + I++ K+N ++ V D + I +W+ L+PGD++ L+ Y
Sbjct: 12 KNICLEFILIKYLEANKTKDNDKIDVWLVGDESGTIEFGVWN---CSLNPGDVIHLSGGY 68
Query: 103 AQIWRNCLTLYSSKSGLIEKIGEFCMVF 130
+++ L+ SK+G + ++ F F
Sbjct: 69 TSLFQGKKRLFVSKAGWVSRVRTFRKTF 96
>gi|448323760|ref|ZP_21513213.1| replication factor A [Natronobacterium gregoryi SP2]
gi|445620896|gb|ELY74383.1| replication factor A [Natronobacterium gregoryi SP2]
Length = 471
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 32 DVY-IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWD-- 84
D Y ++DL +G+ NVN+ +VLD T + +V + + DST + ++LWD
Sbjct: 160 DTYSVEDLSLGLSNVNLVGLVLDTDSVRTFDRDDGSEGKVSNVTLGDSTGRVRVTLWDEQ 219
Query: 85 -EPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNL 143
E L P V + Y + L L+ G IE + E E + S PI +
Sbjct: 220 AELAEELEPDATVEVVDGYVRERDGNLELHVGNRGAIETVDEEV----EYVPDSTPIEGV 275
Query: 144 PVN 146
+
Sbjct: 276 EIG 278
>gi|257076028|ref|ZP_05570389.1| single-stranded DNA-binding protein [Ferroplasma acidarmanus fer1]
Length = 158
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 62 ENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSG 118
E++ V + VAD T I L+LWD+ + G+++++ Y + R + L K G
Sbjct: 38 EDKSVSEVIVADDTGKITLTLWDDQTKDIRDGEVLKIDNGYISLLRGHMRLNVGKYG 94
>gi|435850636|ref|YP_007312222.1| single-stranded DNA-binding protein [Methanomethylovorans
hollandica DSM 15978]
gi|433661266|gb|AGB48692.1| single-stranded DNA-binding protein [Methanomethylovorans
hollandica DSM 15978]
Length = 433
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 28 KEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTL--KVADSTACINLSLWDE 85
KEA ++ IKD+ K+ + + + + +++ V K+ D T + WD+
Sbjct: 52 KEASEIKIKDISNAPKSFTLKGRITSVEKKKFVQKGETVNLYSGKIVDETGVCLFTAWDD 111
Query: 86 PGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGE 125
L+ GDI+R+ Y + W N L + ++EK+ E
Sbjct: 112 FH--LNEGDIIRVQNAYMKFWNNRPELNLGQRSIVEKLHE 149
>gi|396080790|gb|AFN82411.1| hypothetical protein EROM_010670 [Encephalitozoon romaleae SJ-2008]
Length = 111
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 43 KNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCY 102
KN+ + I++ K N ++ V D + I +W+ L PGD++ L+ Y
Sbjct: 12 KNICLEFILIKYLGTNKTKGNDKIDVWLVGDESGTIEFGVWN---CSLSPGDVIHLSGGY 68
Query: 103 AQIWRNCLTLYSSKSGLIEKIGEFCMVF 130
+++ L+ SK+G I ++ F +F
Sbjct: 69 TSLFQGKKRLFISKTGWINRVRTFRKIF 96
>gi|48477745|ref|YP_023451.1| single-stranded DNA-binding protein [Picrophilus torridus DSM 9790]
gi|48430393|gb|AAT43258.1| replication factor A, large subunit [Picrophilus torridus DSM 9790]
Length = 145
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 62 ENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIE 121
E++ V + +AD T I L+LW+E + +R+ Y + R + L K G +
Sbjct: 38 EDKAVTEVVIADDTGKITLTLWNEQADNVKDAVALRIDNGYVSLLRGHMRLNVGKYGSLS 97
Query: 122 KIGEFCMVFNENLDMS 137
+ + NE+LDMS
Sbjct: 98 QTDDEIEA-NEDLDMS 112
>gi|410670995|ref|YP_006923366.1| replication factor A [Methanolobus psychrophilus R15]
gi|409170123|gb|AFV23998.1| replication factor A [Methanolobus psychrophilus R15]
Length = 381
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRTLKVADSTACINLSLWDEPGALL 90
+ D+ G NV + V+ + P N V L VAD T I L+LWD+ L+
Sbjct: 67 VADIAPGTGNVRLIAKVMSVFPAKEFNRNDGTIGRVANLLVADETGSIRLTLWDDKADLV 126
Query: 91 HPGDI 95
GDI
Sbjct: 127 KTGDI 131
>gi|400752767|ref|YP_006529211.1| putative transposase y4bF [Sinorhizobium fredii USDA 257]
gi|390131675|gb|AFL55054.1| putative transposase y4bF [Sinorhizobium fredii USDA 257]
Length = 339
Score = 37.0 bits (84), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 48/139 (34%), Gaps = 25/139 (17%)
Query: 84 DEPGALLH--------PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLD 135
D G LLH D + TK Y Q W + YS K G+ ++ N+
Sbjct: 170 DATGKLLHLRFATSENTFDYLHATKAYLQQWGKPIAFYSDKHGVFRSTA----LYELNMT 225
Query: 136 MSIPIPNLPVNAPQSANGNSNPGNMNNSGNNKGNMRPNPIDRDVNRYSNNPDKGSSSSTQ 195
S P P P A + G+ N G V R S +P S +
Sbjct: 226 SSAPTPRRPRGASSAPTRRCRIGSSRNCGR-------------VRRGSRDPSSHSFDQSL 272
Query: 196 NTWVTWDQLLPVKFQFFSS 214
+ W + P++ + S+
Sbjct: 273 SLWNPPANMFPLRTRAVSA 291
>gi|297527008|ref|YP_003669032.1| OB-fold tRNA/helicase-type nucleic acid binding protein
[Staphylothermus hellenicus DSM 12710]
gi|297255924|gb|ADI32133.1| nucleic acid binding OB-fold tRNA/helicase-type [Staphylothermus
hellenicus DSM 12710]
Length = 151
Score = 37.0 bits (84), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLK---VADSTACINLSLWDEPGALLH 91
I DL G + V++T VL+ SP ++ + RT+ + D T +N +LW L
Sbjct: 18 IIDLKDGEEGVHITARVLETSPPKVIQTRKGPRTISNAVLGDETGRVNATLWGSKAGTLE 77
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
+V + + +R + + +S + ++
Sbjct: 78 EDKVVDIKGAWTTSYRGKVQINIGRSTEVSEV 109
>gi|17227974|ref|NP_484522.1| hypothetical protein all0478 [Nostoc sp. PCC 7120]
gi|17129823|dbj|BAB72436.1| WD-40 repeat protein [Nostoc sp. PCC 7120]
Length = 1708
Score = 37.0 bits (84), Expect = 9.5, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 41/76 (53%)
Query: 3 EKKLAGSHPEKNHGMRAERKEINRKKEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKE 62
+ KL +HP++ + E +E+ +++E + I+ L +K +T + + + L E
Sbjct: 949 QSKLTDTHPQQGLDLVTELRELRKREELTQLEIEQLRGELKEKELTAQLAESQKQQRLSE 1008
Query: 63 NREVRTLKVADSTACI 78
+ R+LK+A + +C+
Sbjct: 1009 AKLNRSLKIALTASCL 1024
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,494,150,192
Number of Sequences: 23463169
Number of extensions: 193730694
Number of successful extensions: 918032
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 805
Number of HSP's that attempted gapping in prelim test: 837015
Number of HSP's gapped (non-prelim): 64405
length of query: 264
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 124
effective length of database: 9,074,351,707
effective search space: 1125219611668
effective search space used: 1125219611668
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)