BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3603
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VM17|SOSSB_DROME SOSS complex subunit B homolog OS=Drosophila melanogaster GN=CG5181
PE=2 SV=1
Length = 204
Score = 147 bits (372), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 68/105 (64%), Positives = 83/105 (79%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGD 94
IKD+ G+KN+NV IVL++ KENREVR KV D TACIN+S+WDEPG L+ PGD
Sbjct: 9 IKDIKPGLKNINVIFIVLEVGVATVTKENREVRNFKVGDPTACINVSIWDEPGKLIAPGD 68
Query: 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
IVRLTK YA IWR+CLTLYS K+G + KIGE+CMVFNE+++MS P
Sbjct: 69 IVRLTKGYASIWRHCLTLYSGKNGEVFKIGEYCMVFNESVNMSEP 113
>sp|Q6NRF9|SOB1B_XENLA SOSS complex subunit B1-B OS=Xenopus laevis GN=nabp2-b PE=2 SV=1
Length = 203
Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN++V IVL+ K+ EVRT KVAD T IN+S+WDE G +
Sbjct: 4 ETFVKDVKPGLKNLSVLFIVLETGRVTKTKDGHEVRTCKVADKTGTINISVWDEVGNFIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSA 151
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P Q+
Sbjct: 64 PGDIIRLTKGYASLFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYTAQQSQNK 123
Query: 152 NGNSNPGNMNNSGNNKGNMRPNPIDRDVNRYSNNPDKGSSSST 194
+ G N+ N+ P P D D SN+ ++ ST
Sbjct: 124 QAQAESGTGTNNHNSSSPAPPAP-DLDNGNGSNSSGPSTNQST 165
>sp|Q96AH0|SOSB2_HUMAN SOSS complex subunit B2 OS=Homo sapiens GN=NABP1 PE=1 SV=1
Length = 204
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 79/110 (71%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++I+D+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 IFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 118
>sp|A5D7P8|SOSB2_BOVIN SOSS complex subunit B2 OS=Bos taurus GN=NABP1 PE=2 SV=1
Length = 206
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 79/110 (71%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+ P
Sbjct: 9 LFIKDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQP 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSELPNFSEPNPD 118
>sp|Q5PRC7|SOSB2_DANRE SOSS complex subunit B2 OS=Danio rerio GN=nabp1 PE=2 SV=1
Length = 211
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 94/158 (59%), Gaps = 12/158 (7%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
+ IKD+ G KN+N+ IVL+I K+ EVR+ +VAD + I +S+WDE G+L+ P
Sbjct: 10 ILIKDVKPGSKNLNIVFIVLEIGRVTKTKDGHEVRSCRVADKSGSIAISVWDELGSLIQP 69
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQS-- 150
GDI+RLT+ YA IW+ CLTLY+ + G ++KIGEFCMV++E + S P P L A Q
Sbjct: 70 GDIIRLTRGYASIWKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPELLAQANQQNK 129
Query: 151 ----ANGNSNPGNMNNSGNNK----GNMRPNPIDRDVN 180
GNS P N+GN N P+ RD N
Sbjct: 130 TSKEQRGNSPPN--QNAGNGTVPVFSNNNAAPVPRDPN 165
>sp|Q8BGW5|SOSB2_MOUSE SOSS complex subunit B2 OS=Mus musculus GN=Nabp1 PE=2 SV=1
Length = 198
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 78/110 (70%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+
Sbjct: 9 LFIKDIKAGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADRTGSITISVWDEIGGLIQT 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 118
>sp|Q5FVP2|SOSB2_RAT SOSS complex subunit B2 OS=Rattus norvegicus GN=Nabp1 PE=2 SV=1
Length = 198
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 78/110 (70%)
Query: 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHP 92
++IKD+ G+KN+NV IVL+I K+ EVR+ KVAD T I +S+WDE G L+
Sbjct: 9 LFIKDIKAGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADRTGSITISVWDEIGGLIQT 68
Query: 93 GDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPN 142
GDI+RLT+ YA +W+ CLTLY+ + G ++KIGEFCMV++E + S P P+
Sbjct: 69 GDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPD 118
>sp|Q66K94|SOSB1_XENTR SOSS complex subunit B1 OS=Xenopus tropicalis GN=nabp2 PE=2 SV=1
Length = 203
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 86/141 (60%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN++V IVL+ K+ EVRT KVAD T IN+S+WD+ G +
Sbjct: 4 ETFVKDVKPGLKNLSVLFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDLGNFIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSA 151
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P Q+
Sbjct: 64 PGDIIRLTKGYASLFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYIAQQSQNK 123
Query: 152 NGNSNPGNMNNSGNNKGNMRP 172
+ G NS N+ P
Sbjct: 124 QAQAESGTGTNSHNSSSPAPP 144
>sp|Q3SWT1|SOSB1_RAT SOSS complex subunit B1 OS=Rattus norvegicus GN=Nabp2 PE=2 SV=1
Length = 211
Score = 124 bits (311), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 83/121 (68%), Gaps = 2/121 (1%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSA 151
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P N Q++
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEY--NTQQAS 121
Query: 152 N 152
N
Sbjct: 122 N 122
>sp|Q9BQ15|SOSB1_HUMAN SOSS complex subunit B1 OS=Homo sapiens GN=NABP2 PE=1 SV=1
Length = 211
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPV-NAPQS 150
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P AP
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNK 123
Query: 151 ANGN-SNP 157
A N SNP
Sbjct: 124 AVQNDSNP 131
>sp|Q8R2Y9|SOSB1_MOUSE SOSS complex subunit B1 OS=Mus musculus GN=Nabp2 PE=2 SV=1
Length = 212
Score = 124 bits (311), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 113
>sp|A6QLK2|SOSB1_BOVIN SOSS complex subunit B1 OS=Bos taurus GN=NABP2 PE=2 SV=1
Length = 211
Score = 124 bits (310), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 78/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN+N+ IVL+ K+ EVRT KVAD T IN+S+WD+ G L+
Sbjct: 4 ETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RLTK YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 113
>sp|Q6DE02|SOB1A_XENLA SOSS complex subunit B1-A OS=Xenopus laevis GN=nabp2-a PE=2 SV=1
Length = 203
Score = 121 bits (303), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 77/110 (70%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
+ ++KD+ G+KN++V IVL+ K+ EVRT KVAD T IN+S+WDE G +
Sbjct: 4 ETFVKDVKPGLKNLSVLFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDELGNFIQ 63
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIP 141
PGDI+RL+K YA +++ CLTLY+ + G ++KIGEFCMV++E + S P P
Sbjct: 64 PGDIIRLSKGYASLFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNP 113
>sp|Q54X41|SOSSB_DICDI SOSS complex subunit B homolog OS=Dictyostelium discoideum
GN=DDB_G0279223 PE=3 SV=1
Length = 183
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 43 KNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCY 102
KN+N IVLD P KE + L VADSTA IN+++WD G + PGDI+RL Y
Sbjct: 14 KNINCVFIVLDKGPPTKKKEGTIYQVL-VADSTASINMTVWDALGEQIQPGDILRLKGGY 72
Query: 103 AQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137
+ I+ L LY K+G+IEKIGEF F E ++S
Sbjct: 73 SNIYIELLNLYVGKTGIIEKIGEFTFPFVEAPNLS 107
>sp|Q58559|RPA_METJA Replication factor A OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpa PE=1 SV=1
Length = 645
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 13 KNHGMRAERKEINRKKEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENR----EVRT 68
K HG+ E +K + I D+ G V +T ++ DIS T K + +
Sbjct: 52 KEHGVYGE------EKNDEEFLISDIEEGQIGVEITGVITDISEIKTFKRRDGSLGKYKR 105
Query: 69 LKVADSTACINLSLWDEPGAL-LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123
+ +AD + I ++LWD+ L + GD++++ + A+ WRN L L S+ I+K+
Sbjct: 106 ITIADKSGTIRMTLWDDLAELDVKVGDVIKIERARARKWRNNLELSSTSETKIKKL 161
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 64 REVRTLKVADSTACINLSLWDEPGAL-LHPGDIVRLTKCYAQIWRNCLTLYSSKSGLI 120
R+VR L + D T I LSLWD+ + + GDIV + YA+ + + L K G I
Sbjct: 430 RKVRNLLLEDGTGRIRLSLWDDLAEIEIKEGDIVEILHAYAKERGDYIDLVIGKYGRI 487
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,525,322
Number of Sequences: 539616
Number of extensions: 4663883
Number of successful extensions: 58257
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 19032
Number of HSP's gapped (non-prelim): 20058
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)