Query psy3603
Match_columns 264
No_of_seqs 135 out of 448
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 20:51:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wjj_A Hypothetical protein F2 99.9 3.1E-26 1.1E-30 192.6 10.2 118 28-145 12-142 (145)
2 1o7i_A SSB, SSO2364, single st 99.9 2.2E-23 7.6E-28 166.9 15.2 115 31-151 1-118 (119)
3 2k75_A Uncharacterized protein 99.9 6.9E-23 2.4E-27 162.4 13.2 95 30-127 1-97 (106)
4 2kbn_A Conserved protein; nucl 99.9 7.5E-21 2.5E-25 151.2 13.9 100 31-133 4-104 (109)
5 3e0e_A Replication protein A; 99.8 4.7E-20 1.6E-24 143.7 9.7 90 31-122 1-95 (97)
6 3dm3_A Replication factor A; p 99.7 7E-18 2.4E-22 133.9 9.4 93 31-125 4-102 (105)
7 2k50_A Replication factor A re 99.7 2.9E-17 1E-21 129.3 11.0 98 28-126 3-108 (115)
8 1ynx_A Replication factor-A pr 99.3 2.3E-12 7.9E-17 102.5 8.4 95 31-125 3-111 (114)
9 1jmc_A Protein (replication pr 99.1 1.4E-10 4.8E-15 100.9 9.9 96 30-125 6-115 (246)
10 4gop_B Putative uncharacterize 98.9 1.3E-08 4.4E-13 82.8 11.1 74 44-127 38-118 (136)
11 4gop_C Putative uncharacterize 98.8 1.1E-08 3.7E-13 97.0 10.7 94 32-125 3-110 (444)
12 1jmc_A Protein (replication pr 98.8 8.5E-09 2.9E-13 89.6 8.2 91 29-121 123-224 (246)
13 3kdf_D Replication protein A 3 98.8 3.1E-08 1.1E-12 80.1 10.6 74 44-127 33-113 (132)
14 4gop_C Putative uncharacterize 98.7 2.6E-08 8.9E-13 94.4 8.5 93 29-122 118-224 (444)
15 2pi2_A Replication protein A 3 98.6 1.5E-07 5.3E-12 84.5 10.8 74 44-127 73-153 (270)
16 1xjv_A Protection of telomeres 98.6 2.7E-07 9.3E-12 83.5 11.0 88 28-116 2-94 (294)
17 1qzg_A Protection of telomeres 98.4 2.4E-06 8.2E-11 74.6 11.3 79 37-116 38-127 (187)
18 1jb7_A Telomere-binding protei 98.1 1.2E-05 4E-10 78.7 10.7 103 13-116 16-140 (495)
19 3kf6_A Protein STN1; OB fold, 97.8 5.3E-05 1.8E-09 64.2 7.5 71 45-125 50-128 (159)
20 1xjv_A Protection of telomeres 96.7 0.0048 1.6E-07 55.6 8.3 83 28-116 141-262 (294)
21 4hik_A Protection of telomeres 96.6 0.01 3.6E-07 49.5 9.1 79 30-115 3-109 (143)
22 3f2b_A DNA-directed DNA polyme 96.4 0.014 4.7E-07 61.9 10.5 91 29-124 4-102 (1041)
23 1txy_A Primosomal replication 95.6 0.052 1.8E-06 42.0 8.0 62 43-105 3-80 (104)
24 3rn5_A Interferon-inducible pr 95.3 0.097 3.3E-06 46.4 9.7 84 33-123 111-198 (208)
25 3ebe_A Protein MCM10 homolog; 95.1 0.019 6.7E-07 50.2 4.5 97 30-126 36-148 (200)
26 3fhw_A Primosomal replication 95.1 0.088 3E-06 42.3 8.0 62 43-105 2-78 (115)
27 3au7_A TIAS, putative uncharac 95.1 0.092 3.1E-06 50.4 9.5 78 33-123 276-359 (402)
28 3m4p_A Ehasnrs, asparaginyl-tR 95.0 0.079 2.7E-06 51.1 9.0 94 22-125 9-121 (456)
29 2hpi_A DNA polymerase III alph 95.0 0.018 6.2E-07 61.9 4.9 73 40-116 1041-1117(1220)
30 3koj_A Uncharacterized protein 94.8 0.068 2.3E-06 42.4 6.5 63 42-105 11-85 (108)
31 3k8a_A Putative primosomal rep 94.7 0.28 9.4E-06 38.4 9.7 73 43-116 8-97 (103)
32 2xgt_A Asparaginyl-tRNA synthe 94.4 0.19 6.4E-06 48.0 9.8 81 34-124 2-95 (435)
33 3u4v_A Telomerase-associated p 94.3 1.3 4.4E-05 35.0 12.8 83 33-115 16-104 (117)
34 3en2_A Probable primosomal rep 94.0 0.11 3.8E-06 40.8 6.2 73 42-115 2-92 (101)
35 4gs3_A Single-stranded DNA-bin 93.8 0.24 8.2E-06 39.4 7.8 62 44-106 13-81 (107)
36 3nem_A Aspartyl-tRNA synthetas 93.7 0.22 7.4E-06 47.8 8.8 82 33-125 5-100 (438)
37 2vw9_A Single-stranded DNA bin 93.6 0.11 3.7E-06 42.1 5.6 62 43-105 3-81 (134)
38 1n9w_A Aspartyl-tRNA synthetas 93.5 0.37 1.3E-05 45.9 9.9 79 33-125 3-87 (422)
39 2oq0_A Gamma-interferon-induci 93.3 0.62 2.1E-05 41.2 10.3 83 33-122 115-201 (206)
40 1qvc_A Single stranded DNA bin 93.2 0.11 3.7E-06 42.6 5.0 63 42-105 5-85 (145)
41 3rlo_A Gamma-interferon-induci 93.2 0.18 6.3E-06 44.5 6.7 84 33-123 107-195 (204)
42 3afp_A Single-stranded DNA-bin 93.0 0.17 5.9E-06 42.5 6.2 63 42-105 4-85 (168)
43 1z9f_A Single-strand binding p 92.7 0.15 5.2E-06 42.4 5.3 65 40-105 14-95 (153)
44 1eov_A ASPRS, aspartyl-tRNA sy 92.6 0.87 3E-05 44.1 11.2 86 30-125 21-129 (487)
45 1gm5_A RECG; helicase, replica 92.6 0.068 2.3E-06 54.6 3.6 84 28-115 152-241 (780)
46 3tqy_A Single-stranded DNA-bin 92.5 0.2 6.9E-06 41.7 5.9 64 41-105 7-88 (158)
47 3vdy_A SSB, single-stranded DN 92.4 0.19 6.4E-06 39.2 5.2 63 42-105 5-82 (116)
48 1e1o_A Lysyl-tRNA synthetase, 92.3 0.4 1.4E-05 46.8 8.5 75 41-125 64-147 (504)
49 3kf8_A Protein STN1; OB fold; 92.3 0.93 3.2E-05 40.4 10.1 76 45-124 88-183 (220)
50 3ulp_A Single-strand binding p 92.3 0.19 6.4E-06 39.9 5.1 62 42-104 6-86 (124)
51 1v1q_A Primosomal replication 92.2 0.6 2.1E-05 38.4 8.2 63 43-106 20-98 (134)
52 3i7f_A Aspartyl-tRNA synthetas 91.9 0.66 2.3E-05 46.0 9.5 87 28-125 46-152 (548)
53 1wyd_A Hypothetical aspartyl-t 91.7 0.77 2.6E-05 43.8 9.5 81 34-125 6-97 (429)
54 3ull_A DNA binding protein; DN 91.3 0.25 8.7E-06 39.6 4.9 64 40-104 12-99 (132)
55 3eiv_A Single-stranded DNA-bin 91.2 0.37 1.3E-05 42.1 6.2 63 42-105 4-85 (199)
56 3bju_A Lysyl-tRNA synthetase; 90.8 0.6 2E-05 45.8 7.9 74 44-125 57-140 (521)
57 2fxq_A Single-strand binding p 90.6 0.44 1.5E-05 42.2 6.2 64 41-105 4-84 (264)
58 1x54_A Asparaginyl-tRNA synthe 90.4 0.43 1.5E-05 45.6 6.4 81 34-125 6-100 (434)
59 4dam_A Single-stranded DNA-bin 90.3 0.29 1E-05 39.5 4.4 59 44-104 17-94 (128)
60 1eqq_A Single stranded DNA bin 90.3 0.11 3.6E-06 44.3 1.9 63 42-105 6-86 (178)
61 3lgj_A Single-stranded DNA-bin 89.6 0.46 1.6E-05 40.1 5.3 63 42-105 23-104 (169)
62 4ex5_A Lysine--tRNA ligase; st 89.6 0.64 2.2E-05 45.9 7.0 73 44-125 88-168 (529)
63 3a74_A Lysyl-tRNA synthetase; 88.6 0.54 1.8E-05 45.8 5.7 75 41-125 56-138 (493)
64 3k7u_C MP18 RNA editing comple 88.6 0.75 2.6E-05 38.2 5.8 62 41-105 5-85 (148)
65 3pgz_A Single-stranded DNA-bin 88.4 0.56 1.9E-05 40.8 5.1 63 41-104 25-106 (193)
66 3u58_A Tetrahymena TEB1 AB; te 88.2 3.1 0.00011 35.6 9.4 83 33-115 12-100 (213)
67 1se8_A Single-strand binding p 88.1 1.1 3.6E-05 41.0 7.0 64 40-105 127-207 (301)
68 1se8_A Single-strand binding p 88.1 1.5 5.3E-05 39.9 8.1 62 42-104 5-84 (301)
69 1l0w_A Aspartyl-tRNA synthetas 87.3 2.1 7.2E-05 42.5 9.0 74 41-125 16-102 (580)
70 2fxq_A Single-strand binding p 85.9 2.1 7E-05 37.8 7.4 64 41-105 127-203 (264)
71 1nnx_A Protein YGIW; structura 85.7 2.5 8.4E-05 33.7 7.0 71 35-116 31-103 (109)
72 1c0a_A Aspartyl tRNA synthetas 85.1 2.4 8.1E-05 42.1 8.1 74 41-125 15-104 (585)
73 1jb7_A Telomere-binding protei 83.7 5 0.00017 39.2 9.6 70 28-103 207-278 (495)
74 2xvs_A Tetratricopeptide repea 78.3 11 0.00038 32.2 8.7 74 29-106 60-136 (166)
75 3k81_C MP18 RNA editing comple 65.6 7.7 0.00026 32.9 4.8 65 38-105 18-101 (164)
76 4gkp_A Spindle POLE BODY-assoc 64.7 0.47 1.6E-05 43.6 -3.0 20 221-240 64-83 (275)
77 1wi5_A RRP5 protein homolog; S 63.1 11 0.00037 29.2 4.9 81 24-115 5-93 (119)
78 1sr3_A APO-CCME; OB fold, beta 62.9 49 0.0017 27.2 9.1 57 41-101 28-85 (136)
79 1miu_A BRCA2, breast cancer ty 57.6 7.5 0.00026 40.1 3.9 61 64-124 510-581 (738)
80 3e0j_A DNA polymerase subunit 57.3 43 0.0015 32.7 9.0 68 31-100 85-170 (476)
81 4dni_A Fusion protein of RNA-e 57.2 13 0.00046 33.4 5.1 61 42-105 146-225 (257)
82 1whz_A Hypothetical protein; a 57.2 3.3 0.00011 29.3 0.9 27 235-261 23-54 (70)
83 2cqa_A RUVB-like 2; TIP48, TIP 53.7 27 0.00094 27.3 5.7 73 48-136 15-93 (95)
84 4dni_A Fusion protein of RNA-e 52.9 22 0.00075 32.0 5.8 80 24-106 13-106 (257)
85 1l1o_C Replication protein A 7 52.7 3.2 0.00011 34.9 0.2 22 66-87 80-101 (181)
86 3rlo_A Gamma-interferon-induci 50.5 95 0.0032 27.3 9.2 73 47-123 12-87 (204)
87 2kct_A Cytochrome C-type bioge 50.5 84 0.0029 24.2 9.1 59 40-101 7-68 (94)
88 1j6q_A Cytochrome C maturation 48.4 82 0.0028 25.8 8.1 56 44-101 34-90 (136)
89 4ah6_A Aspartate--tRNA ligase, 47.2 46 0.0016 33.4 7.6 71 41-125 24-112 (617)
90 3u50_C Telomerase-associated p 47.0 3.4 0.00012 35.2 -0.5 49 66-115 76-161 (172)
91 2wkd_A ORF34P2; SSB, single-st 45.5 47 0.0016 26.8 6.0 58 45-105 4-68 (119)
92 4etp_B Spindle POLE BODY-assoc 45.1 1.7 5.9E-05 40.9 -2.8 18 224-241 113-130 (333)
93 2vl6_A SSO MCM N-TER, minichro 40.8 33 0.0011 29.9 4.9 31 77-107 212-242 (268)
94 1vky_A S-adenosylmethionine:tR 39.3 52 0.0018 31.1 6.2 40 61-103 35-75 (347)
95 3rn5_A Interferon-inducible pr 37.6 1.1E+02 0.0039 26.9 7.7 73 47-123 15-91 (208)
96 1ltl_A DNA replication initiat 37.3 39 0.0013 29.8 4.8 30 77-106 199-228 (279)
97 2z0t_A Putative uncharacterize 33.5 26 0.00088 27.7 2.7 41 77-127 21-61 (109)
98 3stb_C RNA-editing complex pro 32.8 89 0.0031 26.1 6.0 77 25-105 28-119 (148)
99 1wdi_A Hypothetical protein TT 32.7 56 0.0019 30.8 5.3 40 61-103 24-65 (345)
100 1xne_A Hypothetical protein PF 32.3 22 0.00075 28.3 2.1 42 75-127 20-61 (113)
101 3plx_B Aspartate 1-decarboxyla 32.2 49 0.0017 26.2 4.1 62 32-106 8-69 (102)
102 4abn_A Tetratricopeptide repea 30.6 2E+02 0.0069 26.1 8.6 69 33-105 356-427 (474)
103 2b29_A Replication protein A 7 30.4 2E+02 0.0068 22.7 9.5 68 48-116 27-101 (123)
104 3mxn_B RECQ-mediated genome in 29.4 97 0.0033 26.1 5.7 47 45-101 61-110 (150)
105 3oug_A Aspartate 1-decarboxyla 28.4 93 0.0032 25.1 5.2 63 32-106 35-97 (114)
106 1wid_A DNA-binding protein RAV 27.5 1.3E+02 0.0046 23.5 6.0 34 67-100 52-102 (130)
107 1vc3_B L-aspartate-alpha-decar 26.8 78 0.0027 24.8 4.4 64 31-106 7-70 (96)
108 1miu_A BRCA2, breast cancer ty 24.5 2E+02 0.0067 29.8 8.0 55 43-102 612-667 (738)
109 1pqh_A Aspartate 1-decarboxyla 23.8 1.1E+02 0.0038 25.5 5.0 62 33-106 50-111 (143)
110 2eif_A IF-5A, protein (eukaryo 23.5 2.8E+02 0.0097 22.1 8.8 59 32-98 10-72 (136)
111 2v31_A Ubiquitin-activating en 22.7 89 0.0031 24.6 4.1 58 73-137 27-84 (112)
112 2c45_A Aspartate 1-decarboxyla 20.2 1.3E+02 0.0043 25.1 4.6 64 31-106 31-94 (139)
No 1
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=99.93 E-value=3.1e-26 Score=192.64 Aligned_cols=118 Identities=19% Similarity=0.296 Sum_probs=107.8
Q ss_pred CcccccccccccccccceEEEEEEEecCCce---ee-c-CC--------cEEEEEEEEeCCCeEEEEEecCCCCCCCCCC
Q psy3603 28 KEAMDVYIKDLHVGIKNVNVTCIVLDISPRV---TL-K-EN--------REVRTLKVADSTACINLSLWDEPGALLHPGD 94 (264)
Q Consensus 28 ~~~~~ikIkDLkpG~knVnv~fiVle~~~~r---~T-K-dG--------g~V~tL~LADeTGsI~ltLWdd~ad~Ik~GD 94 (264)
....+++|+||+|++++++++++|+++..++ ++ | +| +++++++|+|+||+|.+++|+++++.|++||
T Consensus 12 ~kp~~~kI~dL~pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~I~ftlW~e~~~~l~~Gd 91 (145)
T 1wjj_A 12 RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDLMKPGA 91 (145)
T ss_dssp CCCSSCCSTTCCTTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCEEEEEECTTHHHHTCTTC
T ss_pred cCccceEHHHcCCCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcEEEEEEecCCcCcCCCCC
Confidence 4556789999999999999999999998775 32 2 44 3799999999999999999999888899999
Q ss_pred EEEEeeeEEEEECCEEEEEEcCCceEEEecCceeeecCCCCCCCCCCCCCC
Q psy3603 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPV 145 (264)
Q Consensus 95 IIrI~ngyVs~frG~LqL~Igr~G~IekVgEf~~~fnE~pNiSe~~Pe~~~ 145 (264)
+|+|+|||+++|+|+|+|+++++|.|+++++|+|+|+|.+|||++.||...
T Consensus 92 ~v~i~na~v~~~~G~~~L~vgk~g~Ie~~~e~~~~v~e~~n~S~~e~e~~~ 142 (145)
T 1wjj_A 92 TVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYESGP 142 (145)
T ss_dssp EEEEEEEEEEEETTEEEEEECTTCCBCCCSCCCSCCCTTSBTTTSCCSSCC
T ss_pred EEEEeccEEEeECCEEEEEECCCEEEEECCCCcEEEecCCCcCcceEEEee
Confidence 999999999999999999999999999999999999999999999998754
No 2
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=99.91 E-value=2.2e-23 Score=166.86 Aligned_cols=115 Identities=23% Similarity=0.366 Sum_probs=97.6
Q ss_pred cccccccccccccceEEEEEEEecCCce--eecCCc-EEEEEEEEeCCCeEEEEEecCCCCCCCCCCEEEEeeeEEEEEC
Q psy3603 31 MDVYIKDLHVGIKNVNVTCIVLDISPRV--TLKENR-EVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIWR 107 (264)
Q Consensus 31 ~~ikIkDLkpG~knVnv~fiVle~~~~r--~TKdGg-~V~tL~LADeTGsI~ltLWdd~ad~Ik~GDIIrI~ngyVs~fr 107 (264)
|+.+|+||+|++.+|+++|+|+++.+++ .+|+|. +|++++|+|+||+|++++|++.++.|++||+|+|+||++++|+
T Consensus 1 mf~~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~~~~~~~G~vv~i~~g~v~~~~ 80 (119)
T 1o7i_A 1 MEEKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHAGSIKEGQVVKIENAWTTAFK 80 (119)
T ss_dssp CBCCGGGCCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGTTCCCTTCEEEEEEEEEEEET
T ss_pred CcEEHHHCcCCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECChhhcCCCCCEEEEEeEEEEEeC
Confidence 5789999999987799999999999766 367884 9999999999999999999999888999999999999999999
Q ss_pred CEEEEEEcCCceEEEecCceeeecCCCCCCCCCCCCCCCCCCCC
Q psy3603 108 NCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPVNAPQSA 151 (264)
Q Consensus 108 G~LqL~Igr~G~IekVgEf~~~fnE~pNiSe~~Pe~~~~~~~~a 151 (264)
|.+||++++.|.|++++++++.+.++ +++..++||||+
T Consensus 81 g~~qL~i~~~~~i~~~~~~~~~~~~~------l~~~~~~~~~~~ 118 (119)
T 1o7i_A 81 GQVQLNAGSKTKIAEASEDGFPESSQ------IPENTPTAPQQM 118 (119)
T ss_dssp TEEEEEECTTCEEEECCCTTCCCGGG------SCCCCCBCC---
T ss_pred CEEEEEECCCEEEEEcCCcCCCcHHH------hhhcCCCCcccc
Confidence 99999999999999999887544333 344444456663
No 3
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=99.89 E-value=6.9e-23 Score=162.41 Aligned_cols=95 Identities=22% Similarity=0.252 Sum_probs=89.1
Q ss_pred ccccccccccccccceEEEEEEEecCCceeecCCc--EEEEEEEEeCCCeEEEEEecCCCCCCCCCCEEEEeeeEEEEEC
Q psy3603 30 AMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENR--EVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIWR 107 (264)
Q Consensus 30 ~~~ikIkDLkpG~knVnv~fiVle~~~~r~TKdGg--~V~tL~LADeTGsI~ltLWdd~ad~Ik~GDIIrI~ngyVs~fr 107 (264)
+++.+|+||+|++++|+++++|+++.+++.+|+|. +|++++|+|+||+|++++|++. |++||+|+|+||++++|+
T Consensus 1 ~~~~kI~dl~pg~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~~---l~~Gdvv~i~ng~v~~~~ 77 (106)
T 2k75_A 1 SDLVKIRDVSLSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQ---LQDSDVVRIDNARVAQFN 77 (106)
T ss_dssp CCBCCSTTCCTTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESSC---CCTTEEEEEEEEEEEEET
T ss_pred CCcEEHHHcCCCCceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcCc---cCCCCEEEEEeeEEeEEC
Confidence 35689999999998899999999999887778885 5999999999999999999987 999999999999999999
Q ss_pred CEEEEEEcCCceEEEecCce
Q psy3603 108 NCLTLYSSKSGLIEKIGEFC 127 (264)
Q Consensus 108 G~LqL~Igr~G~IekVgEf~ 127 (264)
|++||++++.|.|+++++|+
T Consensus 78 g~~~L~v~~~~~I~~~~~~~ 97 (106)
T 2k75_A 78 GYLSLSVGDSSRIESVNVNI 97 (106)
T ss_dssp TEEEEEECTTSEEEECCSCC
T ss_pred CEEEEEECCcEEEEECCCCC
Confidence 99999999999999999986
No 4
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=99.85 E-value=7.5e-21 Score=151.19 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=90.6
Q ss_pred cccccccccccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEec-CCCCCCCCCCEEEEeeeEEEEECCE
Q psy3603 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWD-EPGALLHPGDIVRLTKCYAQIWRNC 109 (264)
Q Consensus 31 ~~ikIkDLkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWd-d~ad~Ik~GDIIrI~ngyVs~frG~ 109 (264)
.+.+|+||+|++.+|+++++|+++..+ +.+..++.++|+|+||+|++++|+ +..+.|++||+|+|+||++++|+|.
T Consensus 4 ~~~kI~dl~~~~~~v~v~~~V~~~~~~---~~~~~~~~~~l~DeTG~I~~t~W~~~~~~~~~~G~~V~i~n~~v~~~~G~ 80 (109)
T 2kbn_A 4 QLTKIVDIVENGQWANLKAKVIQLWEN---THESISQVGLLGDETGIIKFTIWKNAELPLLEQGESYLLRSVVVGEYNDR 80 (109)
T ss_dssp CBCCTTTCCSTTCEEEEEEEEEEEEEC---CCSSEEEEEEEECTTCCEEEEEEGGGCCCCCCTTCEEEEEEEEEEEETTE
T ss_pred CceEHHHCCCCCCcEEEEEEEEEeEcC---CCCeEEEEEEEECCCCeEEEEEECcccccccCCCCEEEEEEEEEEEECCE
Confidence 457899999988889999999999864 456788999999999999999999 6677899999999999999999999
Q ss_pred EEEEEcCCceEEEecCceeeecCC
Q psy3603 110 LTLYSSKSGLIEKIGEFCMVFNEN 133 (264)
Q Consensus 110 LqL~Igr~G~IekVgEf~~~fnE~ 133 (264)
+||++++.+.|+.+++++++++|-
T Consensus 81 ~~L~v~~~~~I~~~~~~~~~~~~~ 104 (109)
T 2kbn_A 81 FQVQVNKNSSIEKLSEPIEVGLEH 104 (109)
T ss_dssp EEEEECSSSEEEECSSCCCCCCSS
T ss_pred EEEEECCceEEEECCCcccccccc
Confidence 999999999999999988887763
No 5
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=99.82 E-value=4.7e-20 Score=143.66 Aligned_cols=90 Identities=24% Similarity=0.401 Sum_probs=77.8
Q ss_pred cccccccccccccceEEEEEEEecCCcee--ecCC--cEEEEEEEEeCCCeEEEEEecCCCCC-CCCCCEEEEeeeEEEE
Q psy3603 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVT--LKEN--REVRTLKVADSTACINLSLWDEPGAL-LHPGDIVRLTKCYAQI 105 (264)
Q Consensus 31 ~~ikIkDLkpG~knVnv~fiVle~~~~r~--TKdG--g~V~tL~LADeTGsI~ltLWdd~ad~-Ik~GDIIrI~ngyVs~ 105 (264)
|..+|+||+|+ .+++++++|++++++++ +++| +++++++|+|+||+|++++|++.++. |++||+|+| +|++++
T Consensus 1 m~~kI~dl~~g-~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~~~i~~Gdvv~i-~g~v~~ 78 (97)
T 3e0e_A 1 MNYKISELMPN-LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELADFEVKKGDIAEV-SGYVKQ 78 (97)
T ss_dssp CEECGGGCCTT-EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGGCCCCTTCEEEE-EEEEEE
T ss_pred CCeEHHHCCCC-CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCccccccCCCCEEEE-EEEEEE
Confidence 45789999999 47999999999998776 4577 68999999999999999999999885 999999999 689999
Q ss_pred ECCEEEEEEcCCceEEE
Q psy3603 106 WRNCLTLYSSKSGLIEK 122 (264)
Q Consensus 106 frG~LqL~Igr~G~Iek 122 (264)
+.+.+||+++++|.|++
T Consensus 79 ~~~~~el~~g~~~~i~k 95 (97)
T 3e0e_A 79 GYSGLEISVDNIGIIEK 95 (97)
T ss_dssp C--CEEEEEEEEEEEEC
T ss_pred cCCeEEEEECCCcEEEE
Confidence 99999999999999986
No 6
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=99.74 E-value=7e-18 Score=133.89 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=82.6
Q ss_pred cccccccccccccceEEEEEEEecCCcee--ecCC--cEEEEEEEEeCCCeEEEEEecCCCC-CCCCCCEEEEeeeEEEE
Q psy3603 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVT--LKEN--REVRTLKVADSTACINLSLWDEPGA-LLHPGDIVRLTKCYAQI 105 (264)
Q Consensus 31 ~~ikIkDLkpG~knVnv~fiVle~~~~r~--TKdG--g~V~tL~LADeTGsI~ltLWdd~ad-~Ik~GDIIrI~ngyVs~ 105 (264)
++.+|+||+|+. +++++++|++++++++ +++| +++++++|+|+||+|++++|++.++ .|++||+|.| +||+++
T Consensus 4 ~~~~I~dL~~~~-~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~~~l~~Gdvv~i-~g~vk~ 81 (105)
T 3dm3_A 4 DTYNIGELSPGM-TATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTDIDVGRGDYVRV-RGYIRE 81 (105)
T ss_dssp CEECGGGCCSSE-EEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGGSCCCTTCEEEE-EEEEEE
T ss_pred cceEHHHCCCCC-eEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECcccccccCCCCEEEE-EEEEEE
Confidence 468999999995 6999999999998875 4578 6799999999999999999999988 4999999999 799999
Q ss_pred E-CCEEEEEEcCCceEEEecC
Q psy3603 106 W-RNCLTLYSSKSGLIEKIGE 125 (264)
Q Consensus 106 f-rG~LqL~Igr~G~IekVgE 125 (264)
+ +|.++|++++.|.|++.+.
T Consensus 82 ~~~g~~eL~~g~~~~i~~~~~ 102 (105)
T 3dm3_A 82 GYYGGLECTANYVEILKKGEK 102 (105)
T ss_dssp CTTSSEEEEEEEEEEEECCC-
T ss_pred ccCCCEEEEeCCceEEEeccc
Confidence 8 4699999999999988654
No 7
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=99.72 E-value=2.9e-17 Score=129.28 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=86.6
Q ss_pred CcccccccccccccccceEEEEEEEecCCce--eecCC--cEEEEEEEEeCCCeEEEEEecCCCC---CCCCCCEEEEee
Q psy3603 28 KEAMDVYIKDLHVGIKNVNVTCIVLDISPRV--TLKEN--REVRTLKVADSTACINLSLWDEPGA---LLHPGDIVRLTK 100 (264)
Q Consensus 28 ~~~~~ikIkDLkpG~knVnv~fiVle~~~~r--~TKdG--g~V~tL~LADeTGsI~ltLWdd~ad---~Ik~GDIIrI~n 100 (264)
..+++.+|+||++|+. +++.++|+++...+ .+|+| ++++.++|+|+||+|++++|++.++ .|++|++|.|.|
T Consensus 3 ~~~~~~~I~~L~~g~~-v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~~~~~l~~G~vv~i~g 81 (115)
T 2k50_A 3 PEHRMDTISKLEEGAE-TPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIKLLKKFREGDVIRIKD 81 (115)
T ss_dssp CTTCCCCTTTCCTTCE-EEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGGGGGTCCTTSEEEEEE
T ss_pred cccceEEHHHCCCCCE-eEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhhhhhcCCCCCEEEEEe
Confidence 3456789999999996 99999999997776 36788 7999999999999999999997754 589999999999
Q ss_pred eEEEE-ECCEEEEEEcCCceEEEecCc
Q psy3603 101 CYAQI-WRNCLTLYSSKSGLIEKIGEF 126 (264)
Q Consensus 101 gyVs~-frG~LqL~Igr~G~IekVgEf 126 (264)
++++. |+|.+||++++.+.|++.++.
T Consensus 82 ~~v~~~f~g~~qL~~~~~~~i~~~~~~ 108 (115)
T 2k50_A 82 VNIRGGFGGRKEAHLMPRSTVEVLDPL 108 (115)
T ss_dssp EEECCCSSSSCEEEECTTCCEEEESSC
T ss_pred eEEccccCCeEEEEECCCceEEECCcc
Confidence 88876 999999999999999887664
No 8
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.34 E-value=2.3e-12 Score=102.46 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=82.5
Q ss_pred cccccccccccccceEEEEEEEecCCcee--ecCC-cEEEEEEEEeCCCeEEEEEecCCCC----CCCCCCEEEEeeeEE
Q psy3603 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVT--LKEN-REVRTLKVADSTACINLSLWDEPGA----LLHPGDIVRLTKCYA 103 (264)
Q Consensus 31 ~~ikIkDLkpG~knVnv~fiVle~~~~r~--TKdG-g~V~tL~LADeTGsI~ltLWdd~ad----~Ik~GDIIrI~ngyV 103 (264)
...+|++|.|++.+..+.++|+.+.+.+. .++| +++.++.|+|++|+|++++|++.++ .|++|+++.|.++.|
T Consensus 3 ~~~~Is~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V 82 (114)
T 1ynx_A 3 PIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYVSKAKL 82 (114)
T ss_dssp CBCCGGGCCTTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTEEEEEEECHHHHHHHHHHSCSSSEEEEESCEE
T ss_pred ceEEHHHCCCCCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCCeEEEEECHHHHHHHHhhcccCcEEEECCcEE
Confidence 45799999999999999999999998766 2344 7899999999999999999998765 389999999999999
Q ss_pred EE----E---CCEEEEEEcCCceEEEecC
Q psy3603 104 QI----W---RNCLTLYSSKSGLIEKIGE 125 (264)
Q Consensus 104 s~----f---rG~LqL~Igr~G~IekVgE 125 (264)
+. | .+..+|.+++++.|+++.+
T Consensus 83 ~~a~~~y~~~~~~yei~f~~~T~I~~~~d 111 (114)
T 1ynx_A 83 QPAKPQFTNLTHPYELNLDRDTVIEECFD 111 (114)
T ss_dssp EECCTTTSSSSSCEEEEECSSCEEEESCC
T ss_pred EECCCCcccCCCCEEEEECCCCEEEECCC
Confidence 88 3 4788999999999988654
No 9
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=99.15 E-value=1.4e-10 Score=100.90 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=83.0
Q ss_pred ccccccccccccccceEEEEEEEecCCcee-e-cCC-cEEEEEEEEeCCCeEEEEEecCCC----CCCCCCCEEEEeeeE
Q psy3603 30 AMDVYIKDLHVGIKNVNVTCIVLDISPRVT-L-KEN-REVRTLKVADSTACINLSLWDEPG----ALLHPGDIVRLTKCY 102 (264)
Q Consensus 30 ~~~ikIkDLkpG~knVnv~fiVle~~~~r~-T-KdG-g~V~tL~LADeTGsI~ltLWdd~a----d~Ik~GDIIrI~ngy 102 (264)
....+|++|.|++.+..+.++|+.+.+.+. . .+| +++.++.|+|++|+|++++|++.+ +.|++|+++.|.+++
T Consensus 6 ~~~~~I~~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~~~~~~l~~G~vy~i~~~~ 85 (246)
T 1jmc_A 6 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGT 85 (246)
T ss_dssp -CBCCGGGCCTTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHHHHHHHGGGCCTTCEEEEECCE
T ss_pred cceEEHHHCCCCCCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCCeEEEEEChHHHHHhhhhcccCCEEEECCCE
Confidence 356899999999999999999999998775 2 233 789999999999999999999765 458999999999999
Q ss_pred EEEE-------CCEEEEEEcCCceEEEecC
Q psy3603 103 AQIW-------RNCLTLYSSKSGLIEKIGE 125 (264)
Q Consensus 103 Vs~f-------rG~LqL~Igr~G~IekVgE 125 (264)
++.. .+..+|.++..+.|+++.+
T Consensus 86 v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~ 115 (246)
T 1jmc_A 86 LKIANKQFTAVKNDYEMTFNNETSVMPCED 115 (246)
T ss_dssp EEECCGGGCCCCCSEEEECCTTCEEEECCS
T ss_pred EEEcccCcccCCCCEEEEEcCCcEEEEccC
Confidence 9885 5789999999999998755
No 10
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=98.89 E-value=1.3e-08 Score=82.81 Aligned_cols=74 Identities=18% Similarity=0.274 Sum_probs=63.0
Q ss_pred ceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCC-------CCCCCCCEEEEeeeEEEEECCEEEEEEcC
Q psy3603 44 NVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPG-------ALLHPGDIVRLTKCYAQIWRNCLTLYSSK 116 (264)
Q Consensus 44 nVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~a-------d~Ik~GDIIrI~ngyVs~frG~LqL~Igr 116 (264)
.|.++|+|.++.. +..++.++|.|.||+|.+++|.+.. ..|++|++|+|. |.++.|+|.+||.+.+
T Consensus 38 ~V~iVG~V~~~~~------~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~-G~v~~f~g~~qi~~~~ 110 (136)
T 4gop_B 38 QLTFVAVVRNISR------NATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVL-GTLKSFQNRRSISSGH 110 (136)
T ss_dssp EEEEEEEEEEEEE------CSSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEE-EEEEEETTEEEEEESE
T ss_pred EEEEEEEEEEEEe------cCCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEE-EEEEEeCCEEEEEEEE
Confidence 3899999999853 2579999999999999999998542 359999999999 5799999999999997
Q ss_pred CceEEEecCce
Q psy3603 117 SGLIEKIGEFC 127 (264)
Q Consensus 117 ~G~IekVgEf~ 127 (264)
|+++.++.
T Consensus 111 ---ir~v~d~N 118 (136)
T 4gop_B 111 ---MRPVIDYN 118 (136)
T ss_dssp ---EEECSSHH
T ss_pred ---EEECCCcc
Confidence 99987753
No 11
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=98.85 E-value=1.1e-08 Score=97.03 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=81.8
Q ss_pred ccccccccccccceEEEEEEEecCCcee-e-cCC-cEEEEEEEEeCCCeEEEEEecCCC----CCCCCCCEEEEeeeEEE
Q psy3603 32 DVYIKDLHVGIKNVNVTCIVLDISPRVT-L-KEN-REVRTLKVADSTACINLSLWDEPG----ALLHPGDIVRLTKCYAQ 104 (264)
Q Consensus 32 ~ikIkDLkpG~knVnv~fiVle~~~~r~-T-KdG-g~V~tL~LADeTGsI~ltLWdd~a----d~Ik~GDIIrI~ngyVs 104 (264)
..+|++|.|++.+..+.++|+.+++.+. . .+| +++.++.|+|++|.|++++|++.+ +.|++|+++.|.++.|+
T Consensus 3 ~~~I~~L~p~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~ 82 (444)
T 4gop_C 3 IYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSGEIKATGFNDAVDRFYPLLQENHVYLISKARVN 82 (444)
T ss_dssp CCCSTTCCTTCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEETHHHHHHTTTCCTTCEEEEESCEEE
T ss_pred ceeHHHCCCCCcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCCEEEEEEeHHHHHHHHHheecCCEEEEcCCEEE
Confidence 5789999999999999999999998876 2 234 689999999999999999999753 56999999999999998
Q ss_pred EEC-------CEEEEEEcCCceEEEecC
Q psy3603 105 IWR-------NCLTLYSSKSGLIEKIGE 125 (264)
Q Consensus 105 ~fr-------G~LqL~Igr~G~IekVgE 125 (264)
..+ ...+|.++.++.|+++.+
T Consensus 83 ~~~~~y~~~~~~~ei~~~~~T~V~~~~d 110 (444)
T 4gop_C 83 IAKKQFSNLQNEYEITFENSTEIEECTD 110 (444)
T ss_dssp ECCGGGCSCCCSEEEEECTTCEEEECSC
T ss_pred ecCCccccCCCCEEEEEcCCcEEEEccC
Confidence 764 468999999999998754
No 12
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.82 E-value=8.5e-09 Score=89.65 Aligned_cols=91 Identities=15% Similarity=0.152 Sum_probs=74.1
Q ss_pred cccccccccccc---cccceEEEEEEEecCCcee--ec-CC--cEEEEEEEEeCCC-eEEEEEecCCCCC--CCCCCEEE
Q psy3603 29 EAMDVYIKDLHV---GIKNVNVTCIVLDISPRVT--LK-EN--REVRTLKVADSTA-CINLSLWDEPGAL--LHPGDIVR 97 (264)
Q Consensus 29 ~~~~ikIkDLkp---G~knVnv~fiVle~~~~r~--TK-dG--g~V~tL~LADeTG-sI~ltLWdd~ad~--Ik~GDIIr 97 (264)
.+.+.+|.+|.. +. .|++.++|+++++.++ +| +| ...+.+.|.|+|| +|+++||++.+.. ..+|++|.
T Consensus 123 ~~~f~~i~~i~~~~~~~-~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg~~i~~tLWg~~a~~~~~~~~~vv~ 201 (246)
T 1jmc_A 123 QFDFTGIDDLENKSKDS-LVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLA 201 (246)
T ss_dssp CCCBCCGGGGGGSCTTC-EEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCCEEEEEEEHHHHHHCCCTTCCEEE
T ss_pred eeeeEEHHHHhcccCCC-ceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCCCEEEEEEEchhhhhcccCCCCEEE
Confidence 355788888863 33 4999999999998865 34 56 4678999999999 5999999987653 56899999
Q ss_pred EeeeEEEEECCEEEEEEcCCceEE
Q psy3603 98 LTKCYAQIWRNCLTLYSSKSGLIE 121 (264)
Q Consensus 98 I~ngyVs~frG~LqL~Igr~G~Ie 121 (264)
|++++++.|+ .++|+++..+.|.
T Consensus 202 i~~~~v~~f~-g~~ls~~~~s~i~ 224 (246)
T 1jmc_A 202 IKGARVSDFG-GRSLSVLSSSTII 224 (246)
T ss_dssp EEEEEEECTT-SSEEECCSSCEEE
T ss_pred EEEEEEEecC-CeEEEecCcceEE
Confidence 9999999994 5899998877664
No 13
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=98.80 E-value=3.1e-08 Score=80.13 Aligned_cols=74 Identities=18% Similarity=0.278 Sum_probs=62.1
Q ss_pred ceEEEEEEEecCCceeecCCcEEEEEEEEeCCC-eEEEEEecCCC------CCCCCCCEEEEeeeEEEEECCEEEEEEcC
Q psy3603 44 NVNVTCIVLDISPRVTLKENREVRTLKVADSTA-CINLSLWDEPG------ALLHPGDIVRLTKCYAQIWRNCLTLYSSK 116 (264)
Q Consensus 44 nVnv~fiVle~~~~r~TKdGg~V~tL~LADeTG-sI~ltLWdd~a------d~Ik~GDIIrI~ngyVs~frG~LqL~Igr 116 (264)
.|.++|+|.++... ..++.++|.|.|| +|.++.|.+.. ..|++|++|+|. |.++.|+|++||.+.+
T Consensus 33 ~V~iVG~V~~~~~~------~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~-G~l~~f~g~~qi~~~~ 105 (132)
T 3kdf_D 33 QVTIVGIIRHAEKA------PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVA-GHLRSFQNKKSLVAFK 105 (132)
T ss_dssp EEEEEEEEEEEEEC------SSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEE-EEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEEEEc------CCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEE-EEEEeECCEEEEEEEE
Confidence 38999999998532 5799999999999 99999998542 359999999999 5799999999999997
Q ss_pred CceEEEecCce
Q psy3603 117 SGLIEKIGEFC 127 (264)
Q Consensus 117 ~G~IekVgEf~ 127 (264)
|+++.++.
T Consensus 106 ---ir~v~d~N 113 (132)
T 3kdf_D 106 ---IMPLEDMN 113 (132)
T ss_dssp ---EEECSSTH
T ss_pred ---EEEcCCcc
Confidence 99887753
No 14
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=98.71 E-value=2.6e-08 Score=94.39 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=75.2
Q ss_pred ccccccccccccc--ccceEEEEEEEecCCcee--ec-CC--cEEEEEEEEeCCC-eEEEEEecCCCCC------CCCCC
Q psy3603 29 EAMDVYIKDLHVG--IKNVNVTCIVLDISPRVT--LK-EN--REVRTLKVADSTA-CINLSLWDEPGAL------LHPGD 94 (264)
Q Consensus 29 ~~~~ikIkDLkpG--~knVnv~fiVle~~~~r~--TK-dG--g~V~tL~LADeTG-sI~ltLWdd~ad~------Ik~GD 94 (264)
.+.+.+|.||... ...|+++++|+++++.++ +| +| ...+.++|.|.|| +|+++||++.++. +.+|+
T Consensus 118 ~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~~~~~~~~ 197 (444)
T 4gop_C 118 KYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKP 197 (444)
T ss_dssp CCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECTTCBEEEEEEEHHHHHTSTTSTTSSSCC
T ss_pred eecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeCCCCEEEEEEEhhhhhhhhhhhccCCCC
Confidence 3457888998742 234999999999998765 34 46 4779999999999 8999999977643 56899
Q ss_pred EEEEeeeEEEEECCEEEEEEcCCceEEE
Q psy3603 95 IVRLTKCYAQIWRNCLTLYSSKSGLIEK 122 (264)
Q Consensus 95 IIrI~ngyVs~frG~LqL~Igr~G~Iek 122 (264)
||.|++++++.|+|. .|+++..+.|..
T Consensus 198 VV~i~~~kV~~f~G~-~ls~~~~s~i~i 224 (444)
T 4gop_C 198 VLAFKGVKVGDFGGR-SLSMFSSSTMLI 224 (444)
T ss_dssp EEEEESCEEECTTSS-EEECCTTCEEEE
T ss_pred EEEEEeEEEeecCCe-EEeccccceEEE
Confidence 999999999999996 898887776654
No 15
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=98.63 E-value=1.5e-07 Score=84.52 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=61.4
Q ss_pred ceEEEEEEEecCCceeecCCcEEEEEEEEeCCC-eEEEEEecCC------CCCCCCCCEEEEeeeEEEEECCEEEEEEcC
Q psy3603 44 NVNVTCIVLDISPRVTLKENREVRTLKVADSTA-CINLSLWDEP------GALLHPGDIVRLTKCYAQIWRNCLTLYSSK 116 (264)
Q Consensus 44 nVnv~fiVle~~~~r~TKdGg~V~tL~LADeTG-sI~ltLWdd~------ad~Ik~GDIIrI~ngyVs~frG~LqL~Igr 116 (264)
.|.++++|.++.. +..++.++|.|.|| +|.+++|.+. ...|++|++|+|. |.++.|+|.+||.+.+
T Consensus 73 ~V~ivG~V~~i~~------~~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~-G~v~~f~g~~qi~i~~ 145 (270)
T 2pi2_A 73 QVTIVGIIRHAEK------APTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVA-GHLRSFQNKKSLVAFK 145 (270)
T ss_dssp EEEEEEEEEEEEE------CSSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEE-EEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEEEe------ccceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEE-EEEEecCCeeEEEEEE
Confidence 3778888887642 35899999999999 8999999754 2349999999999 6899999999999997
Q ss_pred CceEEEecCce
Q psy3603 117 SGLIEKIGEFC 127 (264)
Q Consensus 117 ~G~IekVgEf~ 127 (264)
|+++.++.
T Consensus 146 ---ir~v~d~n 153 (270)
T 2pi2_A 146 ---IMPLEDMN 153 (270)
T ss_dssp ---EEECSCTH
T ss_pred ---EEecCCHh
Confidence 99987654
No 16
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=98.58 E-value=2.7e-07 Score=83.52 Aligned_cols=88 Identities=20% Similarity=0.239 Sum_probs=72.2
Q ss_pred CcccccccccccccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCC-eEEEEEecCCCC---CC-CCCCEEEEeeeE
Q psy3603 28 KEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTA-CINLSLWDEPGA---LL-HPGDIVRLTKCY 102 (264)
Q Consensus 28 ~~~~~ikIkDLkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTG-sI~ltLWdd~ad---~I-k~GDIIrI~ngy 102 (264)
.++.+++|++|+.+.. +++.++|+++.+++.+|....+++++|.|.|- .|.+.+|.+..+ .+ ++||||+|++..
T Consensus 2 ~~y~y~~l~~l~~~~~-vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~~GDII~l~~vk 80 (294)
T 1xjv_A 2 TNYIYTPLNQLKGGTI-VNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVRFHRLK 80 (294)
T ss_dssp CCCCCCCGGGCCSSEE-EEEEEEEEEEEEEEECSSSSEEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEEEEEEEE
T ss_pred CcceEEEHHHhhCCCe-eEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCCCEEEEEECCChHHCCCCCCCCCEEEEEEEE
Confidence 4678899999988776 99999999999886665446779999999632 299999975432 25 899999999999
Q ss_pred EEEECCEEEEEEcC
Q psy3603 103 AQIWRNCLTLYSSK 116 (264)
Q Consensus 103 Vs~frG~LqL~Igr 116 (264)
++.|+|++++..+.
T Consensus 81 i~~~~g~~~~v~~~ 94 (294)
T 1xjv_A 81 IQVYKKETQGITSS 94 (294)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCeEEEEccC
Confidence 99999999997643
No 17
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=98.39 E-value=2.4e-06 Score=74.60 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=64.9
Q ss_pred cccccccceEEEEEEEecCCceee-cCC-cEEEEEEEEeCC---C--eEEEEEecCCCCC---C-CCCCEEEEeeeEEEE
Q psy3603 37 DLHVGIKNVNVTCIVLDISPRVTL-KEN-REVRTLKVADST---A--CINLSLWDEPGAL---L-HPGDIVRLTKCYAQI 105 (264)
Q Consensus 37 DLkpG~knVnv~fiVle~~~~r~T-KdG-g~V~tL~LADeT---G--sI~ltLWdd~ad~---I-k~GDIIrI~ngyVs~ 105 (264)
+++++.. |++.++|++..+++.+ +.. ..+++++|.|.| . .|.+.++.+..+. + ++||||++++..++.
T Consensus 38 ~~~~g~~-VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~GDIIlL~rvkiq~ 116 (187)
T 1qzg_A 38 LQKKNTI-VNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLHQITLRS 116 (187)
T ss_dssp CCSSCEE-EEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTTCEEEEEEEEEEE
T ss_pred hccCCCE-EEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCCCEEEEEEEEEEE
Confidence 3577776 9999999999988776 433 467999999988 2 5999999765432 5 789999999999999
Q ss_pred ECCEEEEEEcC
Q psy3603 106 WRNCLTLYSSK 116 (264)
Q Consensus 106 frG~LqL~Igr 116 (264)
|+|++++...+
T Consensus 117 ~~g~~~~v~~~ 127 (187)
T 1qzg_A 117 YRDRTQGLSKD 127 (187)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCeEEEEEcC
Confidence 99999997665
No 18
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=98.11 E-value=1.2e-05 Score=78.73 Aligned_cols=103 Identities=16% Similarity=0.225 Sum_probs=70.9
Q ss_pred cccc-eeeeeec--ccccCcccccccccc--cccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCe--------E-
Q psy3603 13 KNHG-MRAERKE--INRKKEAMDVYIKDL--HVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTAC--------I- 78 (264)
Q Consensus 13 ~~h~-~~~e~~~--i~~~~~~~~ikIkDL--kpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGs--------I- 78 (264)
|.|+ ...|..+ =+...++.++.|+++ ..+.. |++.++|++..++..++....+++++|.|.|=. +
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~y~y~~L~~a~~~~~~~-VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~ 94 (495)
T 1jb7_A 16 KKKTAAPKEGAAKKSDKGHKYEYVELAKASLTSAQP-QHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDA 94 (495)
T ss_dssp --------------------CCBCCTTTSCSSCCSC-EEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSC
T ss_pred ccccCccccCCCCcccccCCCccEEHHHHHhccCCe-EEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccc
Confidence 3343 4455433 222377889999987 56776 999999999999977764467799999997433 6
Q ss_pred ----EEEEecCCCC---CC-CCCCEEEEeeeEEEEECCEEEEEEcC
Q psy3603 79 ----NLSLWDEPGA---LL-HPGDIVRLTKCYAQIWRNCLTLYSSK 116 (264)
Q Consensus 79 ----~ltLWdd~ad---~I-k~GDIIrI~ngyVs~frG~LqL~Igr 116 (264)
.+.++....+ .+ .+||||+|++..++.|+|++++....
T Consensus 95 ~~~~~v~iF~~~~e~LP~V~~~GDII~LhrvkIq~~ng~~~~v~~~ 140 (495)
T 1jb7_A 95 SDYATLVLYAKRFEDLPIIHRAGDIIRVHRATLRLYNGQRQFNANV 140 (495)
T ss_dssp BCCEEEEEEESSGGGSCCCCEETCEEEEEEEEEEEETTEEEEEEET
T ss_pred cCceEEEEECCChHHCCCCCCCCCEEEEEEEEEEEECCcEEEEecC
Confidence 9999975432 26 58999999999999999999987765
No 19
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=97.78 E-value=5.3e-05 Score=64.21 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=59.0
Q ss_pred eEEEEEEEecCCceeecCCcEEEEEEEEeCCC-eEEEEEecCC-C------CCCCCCCEEEEeeeEEEEECCEEEEEEcC
Q psy3603 45 VNVTCIVLDISPRVTLKENREVRTLKVADSTA-CINLSLWDEP-G------ALLHPGDIVRLTKCYAQIWRNCLTLYSSK 116 (264)
Q Consensus 45 Vnv~fiVle~~~~r~TKdGg~V~tL~LADeTG-sI~ltLWdd~-a------d~Ik~GDIIrI~ngyVs~frG~LqL~Igr 116 (264)
|.++|+|+.+.+. .....++|-|.|| .|.+.+|-+. . ..+.+|++|+|+ |.++.|+|..||.+.+
T Consensus 50 V~IvGiVv~~~~~------~~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~-G~v~~fr~~rqI~~~~ 122 (159)
T 3kf6_A 50 IQIVGYIAAIDIY------EGKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVF-GKINSFRSEVELIAQS 122 (159)
T ss_dssp EEEEEEEEEEEEE------TTEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEE-EEEECSSSSCEEEEEE
T ss_pred EEEEEEEEEEEEe------CCEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEE-EEEEeeCCEEEEEEEE
Confidence 9999999997633 2468889999999 5999999654 1 127899999999 5899999999999998
Q ss_pred CceEEEecC
Q psy3603 117 SGLIEKIGE 125 (264)
Q Consensus 117 ~G~IekVgE 125 (264)
|.++++
T Consensus 123 ---i~~v~d 128 (159)
T 3kf6_A 123 ---FEELRD 128 (159)
T ss_dssp ---EEEECS
T ss_pred ---EEECCC
Confidence 777765
No 20
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=96.69 E-value=0.0048 Score=55.64 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=59.4
Q ss_pred CcccccccccccccccceEEEEEEEecCCceeecCCcEEEEEEEEeC----------------------------CCeEE
Q psy3603 28 KEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADS----------------------------TACIN 79 (264)
Q Consensus 28 ~~~~~ikIkDLkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADe----------------------------TGsI~ 79 (264)
....+..|+||++++- +++++.|+.+.... ++ ...|.|-|. ..++.
T Consensus 141 ~~~~~~~L~di~~~~f-~DLv~qVv~v~~~~----~~-~~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~~~~~~~lt~~ 214 (294)
T 1xjv_A 141 PSWTLLKLCDVQPMQY-FDLTCQLLGKAEVD----GA-SFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTID 214 (294)
T ss_dssp ---CCCCGGGCCSSCE-EEEEEEEEEEEECS----SS-EEEEEEECSSCCSSCBCCCCCCSSCCEECHHHHHHHGGGSEE
T ss_pred CCCceeEHHHcccCCe-eeEEEEEEEEEecC----CC-eEEEEEECCCCCCCCccccccccccccCcccccccccCeeEE
Confidence 3446789999999985 99999999875321 11 123444443 23588
Q ss_pred EEEecCCC---CCCCCCCEEEEeeeEEEEE--------CCEEEEEEcC
Q psy3603 80 LSLWDEPG---ALLHPGDIVRLTKCYAQIW--------RNCLTLYSSK 116 (264)
Q Consensus 80 ltLWdd~a---d~Ik~GDIIrI~ngyVs~f--------rG~LqL~Igr 116 (264)
+++||+.+ ..+++||.|+|+|..++.. .+.|+..+..
T Consensus 215 V~~~d~h~~~~~~lk~Gd~V~l~Nv~~k~~~~~~~~~~~~~le~~lh~ 262 (294)
T 1xjv_A 215 ILVYDNHVHVARSLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHG 262 (294)
T ss_dssp EEEETTHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECS
T ss_pred EEEEcchhHHHhcCCCCcEEEEeeeEEEecccccccCCCcceEEEEec
Confidence 89999775 4599999999999998888 4678877764
No 21
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=96.59 E-value=0.01 Score=49.53 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=56.4
Q ss_pred ccccccccccccccceEEEEEEEecCCceeecCCcEEEEEEEEeCC---------------------C--eEEEEEecCC
Q psy3603 30 AMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADST---------------------A--CINLSLWDEP 86 (264)
Q Consensus 30 ~~~ikIkDLkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeT---------------------G--sI~ltLWdd~ 86 (264)
..+..|+||++++= +++++-|+.... ++ ...+|.|.|=| | ++++++|+..
T Consensus 3 ~kf~llkdv~~~~F-~Dl~~qVv~~~~-----~~-~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~h 75 (143)
T 4hik_A 3 DSFSLLSQITPHQR-CSFYAQVIKTWY-----SD-KNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEH 75 (143)
T ss_dssp -CCCCGGGCCSSCE-EEEEEEEEEEEE-----CS-SCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHH
T ss_pred chhhhHHhCCCCCe-EEEEEEEEEEEc-----CC-CeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcH
Confidence 35677999999995 999999998531 22 34455555532 3 7899999966
Q ss_pred C----CCCCCCCEEEEeeeEEEEEC-CEEEEEEc
Q psy3603 87 G----ALLHPGDIVRLTKCYAQIWR-NCLTLYSS 115 (264)
Q Consensus 87 a----d~Ik~GDIIrI~ngyVs~fr-G~LqL~Ig 115 (264)
+ +.+++||+|+|+|..++.-+ |.|+=.+.
T Consensus 76 a~~ar~~lk~Gd~v~L~Nv~iK~~~~g~LEG~l~ 109 (143)
T 4hik_A 76 DFYCRNYIKEGDYVVMKNVRTKIDHLGYLECILH 109 (143)
T ss_dssp HHHHTTTCCTTCEEEEEEEEEEECTTSCEEEEEC
T ss_pred HHHHHhhCCCCCEEEEEeEEEeecCCceEEEEEc
Confidence 4 45999999999998777764 54555543
No 22
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=96.39 E-value=0.014 Score=61.92 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=71.4
Q ss_pred cccccccccccccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCC------CCCCCCCEEEEeeeE
Q psy3603 29 EAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPG------ALLHPGDIVRLTKCY 102 (264)
Q Consensus 29 ~~~~ikIkDLkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~a------d~Ik~GDIIrI~ngy 102 (264)
.++.++|++|...+.+|.+.+.|.++. .+++|+|+.++++.|.|-|++|.+++|-... +.|++|+.|+|+ |.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~~~~~~~~~~~~~~td~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~-g~ 81 (1041)
T 3f2b_A 4 EEPVRRLETIVEEERRVVVQGYVFDAE-VSELKSGRTLLTMKITDYTNSILVKMFSRDKEDAELMSGVKKGMWVKVR-GS 81 (1041)
T ss_dssp ---CBCGGGCCSCEEEEEEEEEEEEEE-EEECTTSCEEEEEEEECSSCEEEEEEECSSHHHHHHHHTCCTTCEEEEE-EE
T ss_pred ccCcccHHHhhcccceEEEEEEEEEEE-EEEccCCCEEEEEEEEeCCCCEEEEEeecccchHHHHhcCCCCCEEEEE-EE
Confidence 345688999999888899999999976 4477899999999999999999999996432 359999999999 45
Q ss_pred EEE--ECCEEEEEEcCCceEEEec
Q psy3603 103 AQI--WRNCLTLYSSKSGLIEKIG 124 (264)
Q Consensus 103 Vs~--frG~LqL~Igr~G~IekVg 124 (264)
+.. |.+.+.+.+.. |.++.
T Consensus 82 ~~~d~~~~~~~~~~~~---~~~~~ 102 (1041)
T 3f2b_A 82 VQNDTFVRDLVIIAND---LNEIA 102 (1041)
T ss_dssp EEEETTTTEEEEEEEE---EEEEC
T ss_pred EEeccCCcceEEEeee---eEEec
Confidence 654 45778887764 55543
No 23
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=95.59 E-value=0.052 Score=42.02 Aligned_cols=62 Identities=5% Similarity=0.056 Sum_probs=49.7
Q ss_pred cceEEEEEEEecCCceeecCCcEEEEEEEE-----eCCCe-------EEEEEecCCCC----CCCCCCEEEEeeeEEEE
Q psy3603 43 KNVNVTCIVLDISPRVTLKENREVRTLKVA-----DSTAC-------INLSLWDEPGA----LLHPGDIVRLTKCYAQI 105 (264)
Q Consensus 43 knVnv~fiVle~~~~r~TKdGg~V~tL~LA-----DeTGs-------I~ltLWdd~ad----~Ik~GDIIrI~ngyVs~ 105 (264)
+.|.+++.+..-.+.+.+.+|..++++.|| ++++- |++.+|+..++ .++.|+.|.|.| +.+.
T Consensus 3 N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G-~L~~ 80 (104)
T 1txy_A 3 NRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQG-FISC 80 (104)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEE-EEEC
T ss_pred EEEEEEEEECCCceEEECCCCCEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEE-EEEe
Confidence 348899998887777778889999988886 34778 99999998764 489999999994 5543
No 24
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=95.33 E-value=0.097 Score=46.35 Aligned_cols=84 Identities=23% Similarity=0.217 Sum_probs=65.0
Q ss_pred ccccccc---ccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCCCC-CCCCCEEEEeeeEEEEECC
Q psy3603 33 VYIKDLH---VGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGAL-LHPGDIVRLTKCYAQIWRN 108 (264)
Q Consensus 33 ikIkDLk---pG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~ad~-Ik~GDIIrI~ngyVs~frG 108 (264)
.+|.+|. +|. -|+..|.|..+... .......|.|.||.|.+.+-+..... .++||-+++.=-..+...+
T Consensus 111 PKI~~L~~q~~Gt-~V~G~F~v~KK~v~------~~~~~YeI~DnTG~MeVvv~G~~~~i~CEeGDKLrL~cFeL~~~~~ 183 (208)
T 3rn5_A 111 PKINTLQTQPLGT-IVNGLFVVQKVTEK------KKNILFDLSDNTGKMEVLGVRNEDTMKCKEGDKVRLTFFTLSKNGE 183 (208)
T ss_dssp CCHHHHHTSCSSC-EEEEEEEEEEEEEC------SSEEEEEEEETTEEEEEEEECSTGGGSCCTTCEEEEEEEEEEECSS
T ss_pred cchhhhhcCCCCC-EEeEEEEEEEEEec------cceEEEEEecCCCcEEEEEeccCcccccCCCCeeEEEEEEEeccCC
Confidence 4677763 444 49999999987644 24667789999999999999876554 7899999998555566679
Q ss_pred EEEEEEcCCceEEEe
Q psy3603 109 CLTLYSSKSGLIEKI 123 (264)
Q Consensus 109 ~LqL~Igr~G~IekV 123 (264)
.+||.-+..+-|+.+
T Consensus 184 ~~qL~s~~HSfikVi 198 (208)
T 3rn5_A 184 KLQLTSGVHSTIKVI 198 (208)
T ss_dssp SEEEECCTTCEEEEE
T ss_pred eeeEEEecceeEEEE
Confidence 999999988866654
No 25
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=95.08 E-value=0.019 Score=50.17 Aligned_cols=97 Identities=9% Similarity=0.114 Sum_probs=66.0
Q ss_pred cccccccccc----c---cccceEEEEEEEecCCceeecCCcEEEEEEEEeC---CCeEEEEEecCCCC---CCCCCCEE
Q psy3603 30 AMDVYIKDLH----V---GIKNVNVTCIVLDISPRVTLKENREVRTLKVADS---TACINLSLWDEPGA---LLHPGDIV 96 (264)
Q Consensus 30 ~~~ikIkDLk----p---G~knVnv~fiVle~~~~r~TKdGg~V~tL~LADe---TGsI~ltLWdd~ad---~Ik~GDII 96 (264)
-.++.|.+|. + ...+.-+.++|.++.+++.+++|+.|..+.|.|= ..+|.+-|+++..+ .+.+|++|
T Consensus 36 ~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~DL~~~~~~V~lfLFg~a~~~~~k~~~G~Vi 115 (200)
T 3ebe_A 36 RKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNNGKTFSIWRLNDLKDLDKYISLFLFGDVHKEHWKTDQGTVI 115 (200)
T ss_dssp CEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC-------CCEEEEEECSSSTTCCEEEEECHHHHHHHTTCCTTEEE
T ss_pred CeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcCCCCeEEEEEEEecCCCCcEEEEEEechHHHHhcCcCCceEE
Confidence 3455666662 1 1235888999999999988888988888888764 45799999996643 38899999
Q ss_pred EEeeeEEEEEC---CEEEEEEcCCceEEEecCc
Q psy3603 97 RLTKCYAQIWR---NCLTLYSSKSGLIEKIGEF 126 (264)
Q Consensus 97 rI~ngyVs~fr---G~LqL~Igr~G~IekVgEf 126 (264)
-|-|..+-.-+ +..-|.|.....|..+|..
T Consensus 116 aiLNP~i~~~~~~~~~~sLsv~~~~~Il~IG~a 148 (200)
T 3ebe_A 116 GLLNANPMKPKEGTDEVCLSVDNPQKVLLMGDA 148 (200)
T ss_dssp EEESCEECCCCTTCCCEEEECSSGGGEEEEEEE
T ss_pred EEECCEEccCCCCCcceEEEECCcccEEEEEec
Confidence 99998753322 4678888887888888763
No 26
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=95.07 E-value=0.088 Score=42.28 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=49.4
Q ss_pred cceEEEEEEEecCCceeecCCcEEEEEEEEeC-----CCe-------EEEEEecCCC---CCCCCCCEEEEeeeEEEE
Q psy3603 43 KNVNVTCIVLDISPRVTLKENREVRTLKVADS-----TAC-------INLSLWDEPG---ALLHPGDIVRLTKCYAQI 105 (264)
Q Consensus 43 knVnv~fiVle~~~~r~TKdGg~V~tL~LADe-----TGs-------I~ltLWdd~a---d~Ik~GDIIrI~ngyVs~ 105 (264)
+.|.+++.+.+-.+.|.|.+|..+++++||-+ .|. |++++|+..+ +.++.|+.|.|. |....
T Consensus 2 NkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~~~l~kGs~V~Ve-GrL~t 78 (115)
T 3fhw_A 2 NTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLADTPLGTEMQVQ-GFLAP 78 (115)
T ss_dssp EEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHHTTCCTTCEEEEE-EEEEE
T ss_pred CEEEEEEEECcCcceEECCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhhhccCCCCEEEEE-EEEEE
Confidence 45889999999888888889999999988754 343 8999999554 458999999999 45655
No 27
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=95.06 E-value=0.092 Score=50.44 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=57.3
Q ss_pred cccccccccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCC------CCCCCCCEEEEeeeEEEEE
Q psy3603 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPG------ALLHPGDIVRLTKCYAQIW 106 (264)
Q Consensus 33 ikIkDLkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~a------d~Ik~GDIIrI~ngyVs~f 106 (264)
..|+++++.+. +-+.+.|.+.. +.-+.|+-|. +|.|++|+|.+.+|.... ..+.+||.|.+.|+ ++.
T Consensus 276 ~~i~~~~~~~~-~~v~G~V~~~P--~~~~GGHV~f--~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~-v~~- 348 (402)
T 3au7_A 276 EEVHRLENYRS-YRLRGRVTLEP--YDIEGGHVFF--EIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGS-MKK- 348 (402)
T ss_dssp GGCSSCCTTCE-EEEEEEEEEEE--EEETTTEEEE--EEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEE-EET-
T ss_pred ccccccccCce-EEEEEEEecCc--EeccCceEEE--EEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEe-ecC-
Confidence 45888999886 99999999873 2223444444 566899999999998442 45889999999965 443
Q ss_pred CCEEEEEEcCCceEEEe
Q psy3603 107 RNCLTLYSSKSGLIEKI 123 (264)
Q Consensus 107 rG~LqL~Igr~G~IekV 123 (264)
| +|++.+ |+.+
T Consensus 349 -g--tLnvEk---~~v~ 359 (402)
T 3au7_A 349 -D--TINLEK---IQIV 359 (402)
T ss_dssp -T--EEEEEE---EEEE
T ss_pred -C--EEEEEE---EEEc
Confidence 5 888876 5544
No 28
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=95.04 E-value=0.079 Score=51.12 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=62.1
Q ss_pred ecccccCcccccccccccc--cccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCC-C-----CCCCCC
Q psy3603 22 KEINRKKEAMDVYIKDLHV--GIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEP-G-----ALLHPG 93 (264)
Q Consensus 22 ~~i~~~~~~~~ikIkDLkp--G~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~-a-----d~Ik~G 93 (264)
++.+.-.....++|+||.. |+. |.+.+.|..+. ..|+.+.-+.|.|.||.|++.+=.+. . ..+..|
T Consensus 9 ~~~~~~~~~~~~~i~~~~~~~g~~-V~v~Gwv~~~R-----~~Gk~~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~l~~g 82 (456)
T 3m4p_A 9 ATTTPVETPIVCNIRDAAGLEGKL-VTFKGWAYHIR-----KARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRE 82 (456)
T ss_dssp -------CCCCEECCSTTCCCSSE-EEEEEEEEEEE-----CCSSSEEEEEEECSSCEEEEEEESTTTTCHHHHTTCCTT
T ss_pred hcccCCCcceEEEhhhhhhcCCCE-EEEEEEEEEEe-----cCCCceEEEEEEeCCccEEEEEecccchhhHHhhcCCCc
Confidence 4444555667788999843 444 88888887752 23556999999999999999885422 1 248899
Q ss_pred CEEEEeeeEEEEE-C----------CEEEEEEcCCceEEEecC
Q psy3603 94 DIVRLTKCYAQIW-R----------NCLTLYSSKSGLIEKIGE 125 (264)
Q Consensus 94 DIIrI~ngyVs~f-r----------G~LqL~Igr~G~IekVgE 125 (264)
|+|.|.| .+..- . |.++|.+.+ |+.++.
T Consensus 83 ~~V~V~G-~v~~~~~~~~~~~~~t~g~~El~~~~---i~vl~~ 121 (456)
T 3m4p_A 83 CSLEITG-RLNAYAGKNHPPEIADILNLEMQVTE---WKVIGE 121 (456)
T ss_dssp CEEEEEE-EEECCCSSSCCCSCTTBCSSEEEEEE---EEEEEC
T ss_pred cEEEEEe-EEEecCCcccCcccCCCCcEEEEEeE---EEEEec
Confidence 9999995 45432 2 677887775 665554
No 29
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=94.99 E-value=0.018 Score=61.87 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=39.7
Q ss_pred ccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCC----CCCCCCCEEEEeeeEEEEECCEEEEEEc
Q psy3603 40 VGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPG----ALLHPGDIVRLTKCYAQIWRNCLTLYSS 115 (264)
Q Consensus 40 pG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~a----d~Ik~GDIIrI~ngyVs~frG~LqL~Ig 115 (264)
.|.. |.+.++|..+..+ .||.|.++.-++|.|.||.+.+++|.+.. +.+.+|.+|.|+ |.++.-. .++|.+.
T Consensus 1041 ~g~~-v~v~G~v~~~~~~-~Tk~G~~maf~tleD~tg~~evvvf~~~~~~~~~~l~~~~~~~v~-G~v~~~~-~~~l~~~ 1116 (1220)
T 2hpi_A 1041 GKPK-VLLSGMVEEVVRK-PTRSGGMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVL-AEVEKGE-ELRVLAQ 1116 (1220)
T ss_dssp SSCE-EEEEEEECCC-------------CEEEEETTEEEEEC-------------CTTCEEEEE-EEEC------CEEEE
T ss_pred CCCe-EEEEEEEEEEEEe-ecCCCCeEEEEEEEECCCCEEEEEcHHHHHHHHHHhccCCEEEEE-EEEEECC-CcEEEEe
Confidence 4554 8899999998765 57889999999999999999999998654 348899999998 5675433 4666665
Q ss_pred C
Q psy3603 116 K 116 (264)
Q Consensus 116 r 116 (264)
+
T Consensus 1117 ~ 1117 (1220)
T 2hpi_A 1117 A 1117 (1220)
T ss_dssp E
T ss_pred e
Confidence 4
No 30
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=94.78 E-value=0.068 Score=42.39 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=49.0
Q ss_pred ccceEEEEEEEecCCceeecCC-cEEEEEEEE-------eCCCeEEEEEecCCCCC----CCCCCEEEEeeeEEEE
Q psy3603 42 IKNVNVTCIVLDISPRVTLKEN-REVRTLKVA-------DSTACINLSLWDEPGAL----LHPGDIVRLTKCYAQI 105 (264)
Q Consensus 42 ~knVnv~fiVle~~~~r~TKdG-g~V~tL~LA-------DeTGsI~ltLWdd~ad~----Ik~GDIIrI~ngyVs~ 105 (264)
|..|.+++.+..-.+.+.+.+| ..+.++.|| |+|--+++++|+..|+. ++.||.|.|. |+.+.
T Consensus 11 ~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~Ve-GrL~~ 85 (108)
T 3koj_A 11 MNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLE-GRLRI 85 (108)
T ss_dssp CEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEE-EEEEE
T ss_pred cceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEE-EEEEe
Confidence 5568899998887666677777 789888887 34667999999976643 8999999999 45544
No 31
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=94.66 E-value=0.28 Score=38.39 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=54.8
Q ss_pred cceEEEEEEEecCCceeecCCcEEEEEEEEe-----CCC------e-EEEEEecCC--CCCCCCCCEEEEeeeEEEE--E
Q psy3603 43 KNVNVTCIVLDISPRVTLKENREVRTLKVAD-----STA------C-INLSLWDEP--GALLHPGDIVRLTKCYAQI--W 106 (264)
Q Consensus 43 knVnv~fiVle~~~~r~TKdGg~V~tL~LAD-----eTG------s-I~ltLWdd~--ad~Ik~GDIIrI~ngyVs~--f 106 (264)
+.|.+++.+..-.+.+.|.+|..++++.||= ++| . |++++|+.. ++.++.|+.|.|.| ..+. |
T Consensus 8 Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae~~~l~KG~~v~veG-rL~~rs~ 86 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAEEWQYRQGDCATVEG-FLAQKSR 86 (103)
T ss_dssp EEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHHHSTTCTTCEEEEEE-EEEESSS
T ss_pred cEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhhhhccCCCCEEEEEE-EEEECcc
Confidence 4589999999988888888999999998874 344 2 899999843 44589999999995 5654 4
Q ss_pred CC-EEEEEEcC
Q psy3603 107 RN-CLTLYSSK 116 (264)
Q Consensus 107 rG-~LqL~Igr 116 (264)
++ .|.|++..
T Consensus 87 ~~~~lvlhi~~ 97 (103)
T 3k8a_A 87 RSLMPMLRIQN 97 (103)
T ss_dssp SCCCEEEEEEE
T ss_pred CCccEEEEEEE
Confidence 43 45566654
No 32
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=94.39 E-value=0.19 Score=48.00 Aligned_cols=81 Identities=16% Similarity=0.155 Sum_probs=56.5
Q ss_pred ccccccc--cccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCCC-----CCCCCCEEEEeeeEEEE-
Q psy3603 34 YIKDLHV--GIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGA-----LLHPGDIVRLTKCYAQI- 105 (264)
Q Consensus 34 kIkDLkp--G~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~ad-----~Ik~GDIIrI~ngyVs~- 105 (264)
+|+||.. |+. |.+.+.|..+. ..|+.+.-+.|.|.||.|++.+=++..+ .+..||+|.|.| .+..
T Consensus 2 ~i~~~~~~~~~~-V~v~Gwv~~~R-----~~Gk~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G-~v~~~ 74 (435)
T 2xgt_A 2 KIRDLVKHRNER-VCIKGWIHRMR-----RQGKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYG-AIKEV 74 (435)
T ss_dssp CGGGGGGGTTSE-EEEEEEEEEEE-----ECTTSEEEEEEECSSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEE-EEEEC
T ss_pred chhhhhhcCCCE-EEEEEEEEEec-----ccCCCcEEEEEEECCceEEEEECCcchhHHHHhcCCCCCEEEEEE-EEEec
Confidence 5667644 454 89999988752 2455688999999999999988533222 378999999995 5554
Q ss_pred -----ECCEEEEEEcCCceEEEec
Q psy3603 106 -----WRNCLTLYSSKSGLIEKIG 124 (264)
Q Consensus 106 -----frG~LqL~Igr~G~IekVg 124 (264)
-.|.++|.+.+ |+.++
T Consensus 75 ~~~~~~~g~~El~~~~---~~vl~ 95 (435)
T 2xgt_A 75 PEGKEAPNGHELIADF---WKIIG 95 (435)
T ss_dssp C------TTEEEEEEE---EEEEE
T ss_pred CCCcCCCCcEEEEEEE---EEEee
Confidence 23667887775 55554
No 33
>3u4v_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 1.80A {Tetrahymena thermophila}
Probab=94.34 E-value=1.3 Score=35.04 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=63.7
Q ss_pred cccccccccccc--eEEEEEEEecCCceeecCCcEEEEEEEEeCC-CeEEEEEecCC---CCCCCCCCEEEEeeeEEEEE
Q psy3603 33 VYIKDLHVGIKN--VNVTCIVLDISPRVTLKENREVRTLKVADST-ACINLSLWDEP---GALLHPGDIVRLTKCYAQIW 106 (264)
Q Consensus 33 ikIkDLkpG~kn--Vnv~fiVle~~~~r~TKdGg~V~tL~LADeT-GsI~ltLWdd~---ad~Ik~GDIIrI~ngyVs~f 106 (264)
+.|+.|..|... +...++|+-++..-......+|.-++-.|.. -.|.++.|... ...++.|......||.|+.|
T Consensus 16 llisqlqvgknrfsfkfegrvvyksstfqnqqdskyffitaqdannqeinmsfwqkvdqsyqtlkvgqyyyfiggevkqf 95 (117)
T 3u4v_A 16 LLISQLQVGKNRFSFKFEGRVVYKSSTFQNQQDSKYFFITAQDANNQEINMSFWQKVDQSYQTLKVGQYYYFIGGEVKQF 95 (117)
T ss_dssp ECGGGCCTTCCTTSCEEEEEEEEECCCEECTTSCEEEEEEEECTTSCEEEEEEESSTHHHHTTCCTTCEEEEESCEEEEE
T ss_pred eehhhhhcccceeeEEeeeEEEEeeccccccccccEEEEEeecCCCceechHHHHHhhhhhheEeeceEEEEEccchhhh
Confidence 567888777533 5666777776644233445789889999984 56999999744 35699999999999999999
Q ss_pred CCEEEEEEc
Q psy3603 107 RNCLTLYSS 115 (264)
Q Consensus 107 rG~LqL~Ig 115 (264)
++.|+|...
T Consensus 96 knnlelkfk 104 (117)
T 3u4v_A 96 KNNLELKFK 104 (117)
T ss_dssp TTEEEEEEE
T ss_pred ccceEEEEe
Confidence 999999864
No 34
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=94.02 E-value=0.11 Score=40.83 Aligned_cols=73 Identities=10% Similarity=0.083 Sum_probs=53.3
Q ss_pred ccceEEEEEEEecCCceeecCCcEEEEEEEEeC-----CC------e-EEEEEecCCCC---CCCCCCEEEEeeeEEEE-
Q psy3603 42 IKNVNVTCIVLDISPRVTLKENREVRTLKVADS-----TA------C-INLSLWDEPGA---LLHPGDIVRLTKCYAQI- 105 (264)
Q Consensus 42 ~knVnv~fiVle~~~~r~TKdGg~V~tL~LADe-----TG------s-I~ltLWdd~ad---~Ik~GDIIrI~ngyVs~- 105 (264)
|+.|.+++.+.+-.+.+.|.+|..+++++|+-+ .| . |++++|+..++ .+..|+.|.|.| ....
T Consensus 2 MN~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~~~kGs~V~VeG-rL~tr 80 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDRIAPGTVLECVG-FLARK 80 (101)
T ss_dssp CCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTTSCTTCEEEEEE-EEEEC
T ss_pred cCEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhhcCCCCEEEEEE-EEEeC
Confidence 456899999999888888889999998888744 33 2 89999995543 378999999995 5553
Q ss_pred -EC-CEEEEEEc
Q psy3603 106 -WR-NCLTLYSS 115 (264)
Q Consensus 106 -fr-G~LqL~Ig 115 (264)
|+ -.|.|+|.
T Consensus 81 s~~s~~lvlhi~ 92 (101)
T 3en2_A 81 HRSSKALVFHIS 92 (101)
T ss_dssp C----CEEEEEE
T ss_pred cCCCCeeEEEEe
Confidence 44 34666665
No 35
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=93.78 E-value=0.24 Score=39.40 Aligned_cols=62 Identities=8% Similarity=0.038 Sum_probs=50.2
Q ss_pred ceEEEEEEEecCCceeecCCcEEEEEEEE-----eCCCeEEEEEecCCCCC--CCCCCEEEEeeeEEEEE
Q psy3603 44 NVNVTCIVLDISPRVTLKENREVRTLKVA-----DSTACINLSLWDEPGAL--LHPGDIVRLTKCYAQIW 106 (264)
Q Consensus 44 nVnv~fiVle~~~~r~TKdGg~V~tL~LA-----DeTGsI~ltLWdd~ad~--Ik~GDIIrI~ngyVs~f 106 (264)
.|.+++++..-.+.+.+..|..|+++.|| |++--|++++|+..++. +..|+.|.|.| +.+.|
T Consensus 13 ~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~~~kG~~v~v~G-~lrsy 81 (107)
T 4gs3_A 13 TVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFEGMNLEVGTRVKIEG-QLRSY 81 (107)
T ss_dssp CEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCCCCTTCEEEEEE-EEEEE
T ss_pred EEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHhhcCCCEEEEEE-EEEec
Confidence 38899998887666668899899988887 67778999999977765 55899999994 67654
No 36
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=93.72 E-value=0.22 Score=47.83 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=58.1
Q ss_pred cccccccc---cccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCC--------CCCCCCCCEEEEeee
Q psy3603 33 VYIKDLHV---GIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEP--------GALLHPGDIVRLTKC 101 (264)
Q Consensus 33 ikIkDLkp---G~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~--------ad~Ik~GDIIrI~ng 101 (264)
..++||.. |+. |.+.+.|..+.. . +++.-+.|.|.||.|++.+=.+. ...+..||+|.|.|
T Consensus 5 ~~~~~l~~~~~g~~-V~v~Gwv~~~R~-----~-g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G- 76 (438)
T 3nem_A 5 HYSSEITEELNGQK-VKVAGWVWEVKD-----L-GGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEG- 76 (438)
T ss_dssp CCGGGCCGGGTTCE-EEEEEEEEEEEE-----E-TTEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEE-
T ss_pred EEHHHcchhcCCCE-EEEEEEEEEEec-----C-CCeEEEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEE-
Confidence 34555543 454 999999988631 2 35888999999999999886543 23488999999995
Q ss_pred EEEEEC---CEEEEEEcCCceEEEecC
Q psy3603 102 YAQIWR---NCLTLYSSKSGLIEKIGE 125 (264)
Q Consensus 102 yVs~fr---G~LqL~Igr~G~IekVgE 125 (264)
.+..-+ |.++|.+.+ |+.++.
T Consensus 77 ~v~~~~~~~~~~el~~~~---i~vl~~ 100 (438)
T 3nem_A 77 VVNFTPKAKLGFEILPEK---IVVLNR 100 (438)
T ss_dssp EEEECTTSTTSEEEEEEE---EEEEEC
T ss_pred EEEeCCCCCCcEEEEEEE---EEEEec
Confidence 565543 678888876 655554
No 37
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=93.57 E-value=0.11 Score=42.06 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=45.7
Q ss_pred cceEEEEEEEecCCceeecCCcEEEEEEEE------eCCC-------eEEEEEecCCCC----CCCCCCEEEEeeeEEEE
Q psy3603 43 KNVNVTCIVLDISPRVTLKENREVRTLKVA------DSTA-------CINLSLWDEPGA----LLHPGDIVRLTKCYAQI 105 (264)
Q Consensus 43 knVnv~fiVle~~~~r~TKdGg~V~tL~LA------DeTG-------sI~ltLWdd~ad----~Ik~GDIIrI~ngyVs~ 105 (264)
..|.+++.|..-.+.+.+.+|..|+++.|| |+.| -|++++|+..++ .|+.||.|.|.| +.+.
T Consensus 3 N~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G-~L~~ 81 (134)
T 2vw9_A 3 NKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEG-RLTY 81 (134)
T ss_dssp CCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEE-EEEE
T ss_pred eEEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEE-EEEe
Confidence 458888888876666667788888888775 2234 489999997653 389999999994 5543
No 38
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=93.46 E-value=0.37 Score=45.91 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=57.5
Q ss_pred ccccccc--ccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCCCCCC-CCCEEEEeeeEEEEEC--
Q psy3603 33 VYIKDLH--VGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH-PGDIVRLTKCYAQIWR-- 107 (264)
Q Consensus 33 ikIkDLk--pG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~ad~Ik-~GDIIrI~ngyVs~fr-- 107 (264)
.+|++|. .|+. |.+.+.|..+.. . +++.-+.|.|.+|.|++.+=. ..+. .||+|.|.| .+..-.
T Consensus 3 ~~~~~l~~~~~~~-V~v~Gwv~~~R~-----~-g~~~F~~lrD~~g~iQ~v~~~---~~l~~~~~~v~v~G-~v~~~~~~ 71 (422)
T 1n9w_A 3 VLVRDLKAHVGQE-VELLGFLHWRRD-----L-GRIQFLLLRDRSGVVQVVTGG---LKLPLPESALRVRG-LVVENAKA 71 (422)
T ss_dssp CCGGGGGGCTTSE-EEEEEEEEEEEE-----C-SSEEEEEEEETTEEEEEEEES---CCCCCTTCEEEEEE-EEEECTTS
T ss_pred EEHHHHHhcCCCE-EEEEEEEEEEec-----C-CCeEEEEEEECCEEEEEEEEc---cccCCCCCEEEEEE-EEEecCCC
Confidence 4566663 3454 999999987531 2 458899999999999998753 5688 999999995 565543
Q ss_pred -CEEEEEEcCCceEEEecC
Q psy3603 108 -NCLTLYSSKSGLIEKIGE 125 (264)
Q Consensus 108 -G~LqL~Igr~G~IekVgE 125 (264)
|.++|.+.+ |+.++.
T Consensus 72 ~~~~el~~~~---~~vl~~ 87 (422)
T 1n9w_A 72 PGGLEVQAKE---VEVLSP 87 (422)
T ss_dssp TTSEEEEEEE---EEEEEC
T ss_pred CccEEEEEeE---EEEecc
Confidence 378888876 665554
No 39
>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels, structural genomics, PSI-2, protein initiative; 2.00A {Homo sapiens} SCOP: b.40.16.1 b.40.16.1
Probab=93.30 E-value=0.62 Score=41.22 Aligned_cols=83 Identities=14% Similarity=0.101 Sum_probs=63.1
Q ss_pred cccccccc---cccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCCCC-CCCCCEEEEeeeEEEEECC
Q psy3603 33 VYIKDLHV---GIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGAL-LHPGDIVRLTKCYAQIWRN 108 (264)
Q Consensus 33 ikIkDLkp---G~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~ad~-Ik~GDIIrI~ngyVs~frG 108 (264)
.+|.+|+. |. -|+..|.|..+... .......|.|.||.+.+.+-+..... .++||.+++.--..+...+
T Consensus 115 pKI~~L~~qa~Gt-~V~GlF~v~kk~v~------~~~~~yeI~D~tG~MeVvv~G~~~~i~CeeGdkLrL~cF~L~~~~~ 187 (206)
T 2oq0_A 115 LKIDILHKQASGN-IVYGVFMLHKKTVN------QKTTIYEIQDDRGKMDVVGTGQCHNIPCEEGDKLQLFCFRLRKKNQ 187 (206)
T ss_dssp CCHHHHTTSCTTC-EEEEEEEEEEEEEC------SSEEEEEEEETTEEEEEEEEGGGSSCCCCTTCEEEEEEEEEEEETT
T ss_pred ccchhhhccCCcc-EEceEEEEEEEeec------cceEEEEEccCCCcEEEEEeCcccccccCCCCEEEEEEEEeeccCC
Confidence 56777643 44 49999999887643 34677799999999999998866544 7899999998555555678
Q ss_pred EEEEEEcCCceEEE
Q psy3603 109 CLTLYSSKSGLIEK 122 (264)
Q Consensus 109 ~LqL~Igr~G~Iek 122 (264)
.++|.-+..+-|+.
T Consensus 188 ~~~L~S~~hSfikv 201 (206)
T 2oq0_A 188 MSKLISEMHSFIQI 201 (206)
T ss_dssp EEEEECCTTCEEEE
T ss_pred cceEEEecceeEEE
Confidence 89999888775554
No 40
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=93.22 E-value=0.11 Score=42.62 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=46.8
Q ss_pred ccceEEEEEEEecCCceeecCCcEEEEEEEEe--------------CCCeEEEEEecCCCC----CCCCCCEEEEeeeEE
Q psy3603 42 IKNVNVTCIVLDISPRVTLKENREVRTLKVAD--------------STACINLSLWDEPGA----LLHPGDIVRLTKCYA 103 (264)
Q Consensus 42 ~knVnv~fiVle~~~~r~TKdGg~V~tL~LAD--------------eTGsI~ltLWdd~ad----~Ik~GDIIrI~ngyV 103 (264)
+..|.+++.|..-.+.+.+.+|..|+.+.|+= +|--|++++|+..++ .|+.||.|.|.| +.
T Consensus 5 mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G-~L 83 (145)
T 1qvc_A 5 VNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEG-QL 83 (145)
T ss_dssp EEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEE-EE
T ss_pred eEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEE-EE
Confidence 44588888888766666677888999888862 133589999997654 389999999994 45
Q ss_pred EE
Q psy3603 104 QI 105 (264)
Q Consensus 104 s~ 105 (264)
+.
T Consensus 84 ~~ 85 (145)
T 1qvc_A 84 RT 85 (145)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 41
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=93.17 E-value=0.18 Score=44.48 Aligned_cols=84 Identities=23% Similarity=0.139 Sum_probs=59.8
Q ss_pred ccccccc---ccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCCCC-CCCCCEEEEeeeEEEEE-C
Q psy3603 33 VYIKDLH---VGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGAL-LHPGDIVRLTKCYAQIW-R 107 (264)
Q Consensus 33 ikIkDLk---pG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~ad~-Ik~GDIIrI~ngyVs~f-r 107 (264)
.+|.+|. +|. -|+..|.|..+... .......|.|.||.|.+.+-+..... .++||-+++.=-..+.- .
T Consensus 107 PKI~~L~~q~~Gt-~V~G~F~v~KK~v~------~~~~~YeI~DnTG~MeVvv~G~~~~i~CEeGDKLrL~cFeL~~~~~ 179 (204)
T 3rlo_A 107 PKINQLCSQTKGS-FVNGVFEVHKKNVR------GEFTYYEIQDNTGKMEVVVHGRLTTINCEEGDKLKLTCFELAPKSG 179 (204)
T ss_dssp CCHHHHHTCSSCE-EEEEEEEEEEEEEE------TTEEEEEEEETTEEEEEEECGGGGGCCCCTTCEEEEEEEEEECCTT
T ss_pred cchhhhhcCCCCC-EEeEEEEEEEEEec------cceEEEEEecCCCcEEEEEeccCcccccCCCCeeEEEEEEEecccC
Confidence 4677763 344 49999999987643 24667789999999999998866554 78999999983222222 3
Q ss_pred CEEEEEEcCCceEEEe
Q psy3603 108 NCLTLYSSKSGLIEKI 123 (264)
Q Consensus 108 G~LqL~Igr~G~IekV 123 (264)
+.+||.-+..+-|+.+
T Consensus 180 ~~~qL~s~~HSfikVi 195 (204)
T 3rlo_A 180 NTGELRSVIHSHIKVI 195 (204)
T ss_dssp TTCEEEEEEEEEEEEE
T ss_pred CceeEEEecceeEEEE
Confidence 7788887776655544
No 42
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=93.05 E-value=0.17 Score=42.54 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=48.0
Q ss_pred ccceEEEEEEEecCCceeecCCcEEEEEEEEe---------------CCCeEEEEEecCCCC----CCCCCCEEEEeeeE
Q psy3603 42 IKNVNVTCIVLDISPRVTLKENREVRTLKVAD---------------STACINLSLWDEPGA----LLHPGDIVRLTKCY 102 (264)
Q Consensus 42 ~knVnv~fiVle~~~~r~TKdGg~V~tL~LAD---------------eTGsI~ltLWdd~ad----~Ik~GDIIrI~ngy 102 (264)
+..|.+++.|..--+.+.+.+|..|++++|+= +|--|++++|+..++ .|+.||.|.|.| +
T Consensus 4 ~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeG-r 82 (168)
T 3afp_A 4 DTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTG-R 82 (168)
T ss_dssp CCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEE-E
T ss_pred cCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEE-E
Confidence 44588999988877777778888999888872 122489999997653 389999999994 5
Q ss_pred EEE
Q psy3603 103 AQI 105 (264)
Q Consensus 103 Vs~ 105 (264)
.+.
T Consensus 83 L~~ 85 (168)
T 3afp_A 83 LKQ 85 (168)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 43
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=92.70 E-value=0.15 Score=42.38 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=45.8
Q ss_pred ccccceEEEEEEEecCCceeecCCcEEEEEEEE-eC------CC------eEEEEEecCCCC----CCCCCCEEEEeeeE
Q psy3603 40 VGIKNVNVTCIVLDISPRVTLKENREVRTLKVA-DS------TA------CINLSLWDEPGA----LLHPGDIVRLTKCY 102 (264)
Q Consensus 40 pG~knVnv~fiVle~~~~r~TKdGg~V~tL~LA-De------TG------sI~ltLWdd~ad----~Ik~GDIIrI~ngy 102 (264)
|.+..|.+++.|..--+.+.+.+|..|+++.|| ++ +| -+++++|+..++ .|+.|+.|.|.| +
T Consensus 14 ~~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeG-r 92 (153)
T 1z9f_A 14 SFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEG-E 92 (153)
T ss_dssp SCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEE-E
T ss_pred cceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEEE-E
Confidence 445568899988876666667788899888886 22 23 488999997654 389999999994 5
Q ss_pred EEE
Q psy3603 103 AQI 105 (264)
Q Consensus 103 Vs~ 105 (264)
.+.
T Consensus 93 L~~ 95 (153)
T 1z9f_A 93 MRM 95 (153)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 44
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=92.58 E-value=0.87 Score=44.12 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=60.0
Q ss_pred ccccccccccc----cccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecC--C---------CCCCCCCC
Q psy3603 30 AMDVYIKDLHV----GIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDE--P---------GALLHPGD 94 (264)
Q Consensus 30 ~~~ikIkDLkp----G~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd--~---------ad~Ik~GD 94 (264)
.....|++|.. |+. |.+.+.|..+. ..|+.+.-+.|.|.+|.|++.+=.+ . +..+..||
T Consensus 21 ~~~~~~~~l~~~~~~g~~-V~v~GwV~~~R-----~~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~ 94 (487)
T 1eov_A 21 QKRVKFVDLDEAKDSDKE-VLFRARVHNTR-----QQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLES 94 (487)
T ss_dssp CCCCCGGGCCTTTTTTCE-EEEEEEEEEEE-----ECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTC
T ss_pred cceeEHHHhcccccCCCE-EEEEEEEEEee-----ccCCccEEEEEEECCccEEEEEeccccccccHHHHHHHhcCCCCC
Confidence 34456777743 454 89999988753 2344458889999999999988432 1 12488999
Q ss_pred EEEEeeeEEEEEC--------CEEEEEEcCCceEEEecC
Q psy3603 95 IVRLTKCYAQIWR--------NCLTLYSSKSGLIEKIGE 125 (264)
Q Consensus 95 IIrI~ngyVs~fr--------G~LqL~Igr~G~IekVgE 125 (264)
+|.|.| .+..-. |.++|.+.+ |+.++.
T Consensus 95 ~V~V~G-~v~~~~~~~~~~~~g~~El~~~~---i~vl~~ 129 (487)
T 1eov_A 95 IVLVRG-IVKKVDEPIKSATVQNLEIHITK---IYTISE 129 (487)
T ss_dssp EEEEEE-EEEECSSCCTTSSEEEEEEEEEE---EEEEEC
T ss_pred EEEEEE-EEEeCCCCCcCCCCCcEEEEEEE---EEEeec
Confidence 999995 566654 678888876 665554
No 45
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.55 E-value=0.068 Score=54.55 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=62.2
Q ss_pred CcccccccccccccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCC--CCCCC--CCEEEEeeeEE
Q psy3603 28 KEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPG--ALLHP--GDIVRLTKCYA 103 (264)
Q Consensus 28 ~~~~~ikIkDLkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~a--d~Ik~--GDIIrI~ngyV 103 (264)
|......|.++.+|+. +.+.+.|.+.... ...++..+.+.+.|.||.+.++.|+... ..+++ |+.+.+. |.+
T Consensus 152 d~~~~~~~~~~~~~~~-~~~~~~v~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~f~~~~~~~~~~~~~g~~~~~~-G~~ 227 (780)
T 1gm5_A 152 DRRKIFKLNDLLPGEK-VTTQGKIVSVETK--KFQNMNILTAVLSDGLVHVPLKWFNQDYLQTYLKQLTGKEVFVT-GTV 227 (780)
T ss_dssp CCSCCCCSSCCCSSCC-CEEEECCCCCEEE--ECSSCEEEEEEECCSSCCEEEEECSCCTTHHHHHTTCSSCEEEE-EEE
T ss_pred eCCcCCcHHHcCCCCE-EEEEEEEEEEEee--cCCCCeEEEEEEEECCceEEEEEECcHHHHhhCccCCCCEEEEE-EEE
Confidence 4455567889999986 9999999876422 1234578899999999999999998433 23788 9999999 578
Q ss_pred EEE--CCEEEEEEc
Q psy3603 104 QIW--RNCLTLYSS 115 (264)
Q Consensus 104 s~f--rG~LqL~Ig 115 (264)
+.+ .|.+|+..-
T Consensus 228 ~~~~~~~~~~~~~p 241 (780)
T 1gm5_A 228 KSNAYTGQYEIHNA 241 (780)
T ss_dssp CSCCTTSSCCEEEE
T ss_pred EEccCCCcEEEEcC
Confidence 775 555555443
No 46
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=92.54 E-value=0.2 Score=41.74 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=47.8
Q ss_pred cccceEEEEEEEecCCceeecCCcEEEEEEEE------eC-CCe-------EEEEEecCCCC----CCCCCCEEEEeeeE
Q psy3603 41 GIKNVNVTCIVLDISPRVTLKENREVRTLKVA------DS-TAC-------INLSLWDEPGA----LLHPGDIVRLTKCY 102 (264)
Q Consensus 41 G~knVnv~fiVle~~~~r~TKdGg~V~tL~LA------De-TGs-------I~ltLWdd~ad----~Ik~GDIIrI~ngy 102 (264)
++..|.+++.|..--+.+.+.+|..|+.++|+ |+ +|. |++++|+..++ .|+.|+.|.|.| +
T Consensus 7 ~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG-~ 85 (158)
T 3tqy_A 7 GVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIEG-S 85 (158)
T ss_dssp CEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEEE-E
T ss_pred ccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEEE-E
Confidence 56668899988886666667788888887775 33 453 68999997654 389999999994 5
Q ss_pred EEE
Q psy3603 103 AQI 105 (264)
Q Consensus 103 Vs~ 105 (264)
.+.
T Consensus 86 L~~ 88 (158)
T 3tqy_A 86 LRT 88 (158)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 47
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=92.39 E-value=0.19 Score=39.25 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=46.9
Q ss_pred ccceEEEEEEEecCCceeecCCcEEEEEEEEeC------CC-----eEEEEEecCCCC----CCCCCCEEEEeeeEEEE
Q psy3603 42 IKNVNVTCIVLDISPRVTLKENREVRTLKVADS------TA-----CINLSLWDEPGA----LLHPGDIVRLTKCYAQI 105 (264)
Q Consensus 42 ~knVnv~fiVle~~~~r~TKdGg~V~tL~LADe------TG-----sI~ltLWdd~ad----~Ik~GDIIrI~ngyVs~ 105 (264)
+..|.+++.|..-.+.+.+.+|..|+.+.|+=. .| -|++++|+..++ .++.||.|.|.| +.+.
T Consensus 5 mN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G-~l~~ 82 (116)
T 3vdy_A 5 FNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSG-RIQT 82 (116)
T ss_dssp CCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEE-EEEE
T ss_pred EeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEE-EEEe
Confidence 445889999887666666778888988888531 23 389999997654 389999999994 5543
No 48
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=92.33 E-value=0.4 Score=46.82 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=54.0
Q ss_pred cccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCC---------CCCCCCCCEEEEeeeEEEEECCEEE
Q psy3603 41 GIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEP---------GALLHPGDIVRLTKCYAQIWRNCLT 111 (264)
Q Consensus 41 G~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~---------ad~Ik~GDIIrI~ngyVs~frG~Lq 111 (264)
|+. |.+.+.|..+. +-|++.-+.|.|.||.|++.+=.+. ...+..||+|.|.|--...-.|.++
T Consensus 64 ~~~-V~v~Gwv~~~R------~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ge~e 136 (504)
T 1e1o_A 64 NIE-VSVAGRMMTRR------IMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELS 136 (504)
T ss_dssp CCE-EEEEEEEEEEE------EETTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECTTCCEE
T ss_pred CCE-EEEEEEEEEEe------cCCCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecCCceEE
Confidence 444 89999988753 2235788999999999999985431 2347899999999643333458888
Q ss_pred EEEcCCceEEEecC
Q psy3603 112 LYSSKSGLIEKIGE 125 (264)
Q Consensus 112 L~Igr~G~IekVgE 125 (264)
|.+.+ |+.++.
T Consensus 137 i~~~~---i~vl~~ 147 (504)
T 1e1o_A 137 IHCTE---LRLLTK 147 (504)
T ss_dssp EEEEE---EEEEEC
T ss_pred EEEEE---EEEecc
Confidence 88876 655554
No 49
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=92.28 E-value=0.93 Score=40.36 Aligned_cols=76 Identities=20% Similarity=0.127 Sum_probs=54.4
Q ss_pred eEEEEEEEecCCceee--cCCcEEEEEEEEeCCCe---EEEEEecC----C---CCCCCCCCEEEEeeeEEEEECC----
Q psy3603 45 VNVTCIVLDISPRVTL--KENREVRTLKVADSTAC---INLSLWDE----P---GALLHPGDIVRLTKCYAQIWRN---- 108 (264)
Q Consensus 45 Vnv~fiVle~~~~r~T--KdGg~V~tL~LADeTGs---I~ltLWdd----~---ad~Ik~GDIIrI~ngyVs~frG---- 108 (264)
|.+.|+|+........ .+...+.-++|-|.||. |.+++=-. . .+....|.+|+|+ |.++.|++
T Consensus 88 V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~Vk-G~i~~~r~~~~~ 166 (220)
T 3kf8_A 88 INIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELE-GEIYNWYDSINV 166 (220)
T ss_dssp EEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEE-EEEEECCCSTTT
T ss_pred EEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEE-EEEEeecccccc
Confidence 8999999987643211 22357899999999997 55554321 1 1224589999999 57999998
Q ss_pred ----EEEEEEcCCceEEEec
Q psy3603 109 ----CLTLYSSKSGLIEKIG 124 (264)
Q Consensus 109 ----~LqL~Igr~G~IekVg 124 (264)
..||.+.+ |..++
T Consensus 167 ~~~~~rei~ve~---i~vl~ 183 (220)
T 3kf8_A 167 SKKPDRELKVSK---ITVLS 183 (220)
T ss_dssp TSCCCEEEEEEE---EEEEE
T ss_pred ccccceEEEEEE---EEEec
Confidence 78999887 77764
No 50
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=92.26 E-value=0.19 Score=39.86 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=45.8
Q ss_pred ccceEEEEEEEecCCceeecCCcEEEEEEEE------eC-CC-------eEEEEEec-CCCC----CCCCCCEEEEeeeE
Q psy3603 42 IKNVNVTCIVLDISPRVTLKENREVRTLKVA------DS-TA-------CINLSLWD-EPGA----LLHPGDIVRLTKCY 102 (264)
Q Consensus 42 ~knVnv~fiVle~~~~r~TKdGg~V~tL~LA------De-TG-------sI~ltLWd-d~ad----~Ik~GDIIrI~ngy 102 (264)
+..|.+++.|..-.+.+.+.+|..|+.+.|| |+ +| -+++++|+ ..++ .++.||.|.|.| +
T Consensus 6 ~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~G-~ 84 (124)
T 3ulp_A 6 LNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQG-S 84 (124)
T ss_dssp EEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE-E
T ss_pred ceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEEE-E
Confidence 4458888888876666667788889888875 21 35 38999999 5554 389999999994 5
Q ss_pred EE
Q psy3603 103 AQ 104 (264)
Q Consensus 103 Vs 104 (264)
.+
T Consensus 85 L~ 86 (124)
T 3ulp_A 85 LH 86 (124)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 51
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=92.16 E-value=0.6 Score=38.36 Aligned_cols=63 Identities=5% Similarity=0.028 Sum_probs=49.5
Q ss_pred cceEEEEEEEecCCceeecCCcEEEEEEEEeC-----CC-------eEEEEEecCCCCC----CCCCCEEEEeeeEEEEE
Q psy3603 43 KNVNVTCIVLDISPRVTLKENREVRTLKVADS-----TA-------CINLSLWDEPGAL----LHPGDIVRLTKCYAQIW 106 (264)
Q Consensus 43 knVnv~fiVle~~~~r~TKdGg~V~tL~LADe-----TG-------sI~ltLWdd~ad~----Ik~GDIIrI~ngyVs~f 106 (264)
+.|.+++.+.+-.+.|.+.+|..|+++.||-+ +| -|++++|+..++. ++.|+-|.|. |+.+..
T Consensus 20 NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~Ve-GrL~tr 98 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQ-GFISCH 98 (134)
T ss_dssp EEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEE-EEEEEE
T ss_pred eEEEEEEEECcCCceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEE-EEEEEE
Confidence 45899999988777777889999998888643 45 2899999976543 8899999999 456554
No 52
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=91.86 E-value=0.66 Score=46.00 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=63.2
Q ss_pred Ccccccccccccc---cccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEec-CC--------CCCCCCCCE
Q psy3603 28 KEAMDVYIKDLHV---GIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWD-EP--------GALLHPGDI 95 (264)
Q Consensus 28 ~~~~~ikIkDLkp---G~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWd-d~--------ad~Ik~GDI 95 (264)
.....+.|++|.+ |+. |.+.+.|..+. .. +++.-+.|.|.+|.|++.+=. +. +..|..||+
T Consensus 46 ~~~~~~~i~~l~~~~~g~~-V~v~Gwv~~~R-----~~-gkl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~ 118 (548)
T 3i7f_A 46 TGLKYTEIEELVPAMAEKT-VTIRARVQAVR-----GK-GNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESI 118 (548)
T ss_dssp CCCCBCCGGGCSGGGTTCE-EEEEEEEEEEE-----EC-SSEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTCCTTEE
T ss_pred CCCceEEhhhcchhcCCCE-EEEEEEEEEEe-----cC-CCeEEEEEEECCeeEEEEEECCCccCHHHHHHHhCCCCCCE
Confidence 4556788888863 444 88888887752 12 478889999999999998864 21 124889999
Q ss_pred EEEeeeEEEEE--------CCEEEEEEcCCceEEEecC
Q psy3603 96 VRLTKCYAQIW--------RNCLTLYSSKSGLIEKIGE 125 (264)
Q Consensus 96 IrI~ngyVs~f--------rG~LqL~Igr~G~IekVgE 125 (264)
|.|+| .+..- .|.++|.+.+ |..++.
T Consensus 119 V~V~G-~v~~~~~~~~~~~~~~~El~~~~---i~vls~ 152 (548)
T 3i7f_A 119 CDITG-IVKAVEKPIEKATQQDVEIHVTS---IAVVSL 152 (548)
T ss_dssp EEEEE-EEEECSSCCTTSSSCSEEEEEEE---EEEEEC
T ss_pred EEEEE-EEEeCCcccccCCCCcEEEEEeE---EEEEec
Confidence 99995 56553 3678988886 666554
No 53
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=91.68 E-value=0.77 Score=43.80 Aligned_cols=81 Identities=12% Similarity=0.116 Sum_probs=57.0
Q ss_pred cccccc---ccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCC-----CCCCCCCCEEEEeeeEEEE
Q psy3603 34 YIKDLH---VGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEP-----GALLHPGDIVRLTKCYAQI 105 (264)
Q Consensus 34 kIkDLk---pG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~-----ad~Ik~GDIIrI~ngyVs~ 105 (264)
.|++|. .|+. |.+.+.|..+.. . +++.-+.|.|.||.|++.+-.+. ...+..||+|.|.| .+..
T Consensus 6 ~~~~l~~~~~~~~-V~v~Gwv~~~R~-----~-g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~l~~~~~v~v~G-~v~~ 77 (429)
T 1wyd_A 6 FIADVTPEYDGKE-VIWAGWVHLLRD-----L-GGKKFIILRDKTGLGQVVVDKNSSAFGISQELTQESVIQVRG-IVKA 77 (429)
T ss_dssp CTTTCCGGGTTCE-EEEEEEEEEEEE-----E-TTEEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEE-EEEE
T ss_pred EHHHhhHHhCCCE-EEEEEEEEEEec-----C-CCeEEEEEEECCeeEEEEEeCChHHHHHHHhCCCCCEEEEEE-EEEe
Confidence 355553 3554 999999988632 2 35888999999999999985432 13488999999995 5655
Q ss_pred EC---CEEEEEEcCCceEEEecC
Q psy3603 106 WR---NCLTLYSSKSGLIEKIGE 125 (264)
Q Consensus 106 fr---G~LqL~Igr~G~IekVgE 125 (264)
-+ |.++|.+.+ |+.++.
T Consensus 78 ~~~~~~~~el~~~~---~~vl~~ 97 (429)
T 1wyd_A 78 DKRAPRGIELHAEE---ITLLSK 97 (429)
T ss_dssp CSSSGGGEEEEEEE---EEEEEC
T ss_pred cCCCCccEEEEEeE---EEEecc
Confidence 43 378888876 655554
No 54
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=91.28 E-value=0.25 Score=39.56 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=46.2
Q ss_pred ccccceEEEEEEEecCCceeecCCcEEEEEEEE------e-------------CCCeEEEEEecC-CCC----CCCCCCE
Q psy3603 40 VGIKNVNVTCIVLDISPRVTLKENREVRTLKVA------D-------------STACINLSLWDE-PGA----LLHPGDI 95 (264)
Q Consensus 40 pG~knVnv~fiVle~~~~r~TKdGg~V~tL~LA------D-------------eTGsI~ltLWdd-~ad----~Ik~GDI 95 (264)
-++..|.+++.|..-.+.+.+.+|..|+.+.|| | .|--+++++|++ .++ .++.|+.
T Consensus 12 ~~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG~~ 91 (132)
T 3ull_A 12 RSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSR 91 (132)
T ss_dssp CCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTTCE
T ss_pred hcCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCCCE
Confidence 346668899988886666667788888877775 2 122478889995 543 3899999
Q ss_pred EEEeeeEEE
Q psy3603 96 VRLTKCYAQ 104 (264)
Q Consensus 96 IrI~ngyVs 104 (264)
|.|. |+.+
T Consensus 92 V~V~-G~L~ 99 (132)
T 3ull_A 92 IYLE-GKID 99 (132)
T ss_dssp EEEE-EEEE
T ss_pred EEEE-EEEE
Confidence 9999 4554
No 55
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=91.20 E-value=0.37 Score=42.09 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=47.1
Q ss_pred ccceEEEEEEEecCCceeecCCcEEEEEEEEe---------------CCCeEEEEEecCCCC----CCCCCCEEEEeeeE
Q psy3603 42 IKNVNVTCIVLDISPRVTLKENREVRTLKVAD---------------STACINLSLWDEPGA----LLHPGDIVRLTKCY 102 (264)
Q Consensus 42 ~knVnv~fiVle~~~~r~TKdGg~V~tL~LAD---------------eTGsI~ltLWdd~ad----~Ik~GDIIrI~ngy 102 (264)
+..|.+++.|..--+.+.+.+|..|++++||= +|--|++++|+..++ .|++||.|.|. ++
T Consensus 4 ~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~Ve-Gr 82 (199)
T 3eiv_A 4 ETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQ-GR 82 (199)
T ss_dssp CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEE-EE
T ss_pred ccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEE-EE
Confidence 34488888888866666678888898888863 233489999997654 38999999999 45
Q ss_pred EEE
Q psy3603 103 AQI 105 (264)
Q Consensus 103 Vs~ 105 (264)
++.
T Consensus 83 L~~ 85 (199)
T 3eiv_A 83 LKQ 85 (199)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 56
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=90.77 E-value=0.6 Score=45.75 Aligned_cols=74 Identities=9% Similarity=0.077 Sum_probs=54.0
Q ss_pred ceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCC----------CCCCCCCEEEEeeeEEEEECCEEEEE
Q psy3603 44 NVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPG----------ALLHPGDIVRLTKCYAQIWRNCLTLY 113 (264)
Q Consensus 44 nVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~a----------d~Ik~GDIIrI~ngyVs~frG~LqL~ 113 (264)
.|.+.|.|..+. ..|+++.-+.|.|.||.|++.+-.+.. ..+..||+|.|.|--.+.-.|.++|.
T Consensus 57 ~V~v~Grv~~~R-----~~gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~ge~ei~ 131 (521)
T 3bju_A 57 TLKVAGRIHAKR-----ASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSII 131 (521)
T ss_dssp CEEEEEEEEEEE-----ESSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEE
T ss_pred EEEEEEEEEEEe-----cCCCCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEE
Confidence 388999988753 234378899999999999999864321 23789999999964334446889998
Q ss_pred EcCCceEEEecC
Q psy3603 114 SSKSGLIEKIGE 125 (264)
Q Consensus 114 Igr~G~IekVgE 125 (264)
+.+ |+.++.
T Consensus 132 ~~~---i~~l~~ 140 (521)
T 3bju_A 132 PYE---ITLLSP 140 (521)
T ss_dssp EEE---EEEEEC
T ss_pred EeE---EEEeec
Confidence 886 665553
No 57
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=90.55 E-value=0.44 Score=42.17 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=48.2
Q ss_pred cccceEEEEEEEecCCceeecCCcEEEEEEEE------eCCC-------eEEEEEecCCC----CCCCCCCEEEEeeeEE
Q psy3603 41 GIKNVNVTCIVLDISPRVTLKENREVRTLKVA------DSTA-------CINLSLWDEPG----ALLHPGDIVRLTKCYA 103 (264)
Q Consensus 41 G~knVnv~fiVle~~~~r~TKdGg~V~tL~LA------DeTG-------sI~ltLWdd~a----d~Ik~GDIIrI~ngyV 103 (264)
++..|.+++.|..-.+.+.+.+|..|+++.|| |+.| -+++++|+..+ +.++.|+.|.|. |+.
T Consensus 4 ~~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~-G~L 82 (264)
T 2fxq_A 4 GLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVE-GRL 82 (264)
T ss_dssp CEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEE-EEE
T ss_pred ceeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEE-EEE
Confidence 35568899998887777778889899888886 3345 37899999653 358999999999 455
Q ss_pred EE
Q psy3603 104 QI 105 (264)
Q Consensus 104 s~ 105 (264)
+.
T Consensus 83 ~~ 84 (264)
T 2fxq_A 83 EY 84 (264)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 58
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=90.42 E-value=0.43 Score=45.59 Aligned_cols=81 Identities=17% Similarity=0.098 Sum_probs=56.7
Q ss_pred cccccc---ccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCC--------CCCCCCCCEEEEeeeE
Q psy3603 34 YIKDLH---VGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEP--------GALLHPGDIVRLTKCY 102 (264)
Q Consensus 34 kIkDLk---pG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~--------ad~Ik~GDIIrI~ngy 102 (264)
.|++|. .|+. |.+.+.|..+.. . +++.-+.|.|.||.|++.+-.+. ...+..||+|.|.| .
T Consensus 6 ~~~~l~~~~~~~~-V~v~G~v~~~R~-----~-g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G-~ 77 (434)
T 1x54_A 6 YCQEVKPELDGKK-VRLAGWVYTNMR-----V-GKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEG-I 77 (434)
T ss_dssp CGGGCCGGGTTCE-EEEEEEEEEEEE-----E-TTEEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEE-E
T ss_pred EHHHhhHHhCCCE-EEEEEEEEEEec-----C-CCeEEEEEEECCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEE-E
Confidence 455653 3554 999999988631 2 35888999999999999884311 13488999999995 5
Q ss_pred EEEEC---CEEEEEEcCCceEEEecC
Q psy3603 103 AQIWR---NCLTLYSSKSGLIEKIGE 125 (264)
Q Consensus 103 Vs~fr---G~LqL~Igr~G~IekVgE 125 (264)
+..-+ |.++|.+.+ |+.++.
T Consensus 78 v~~~~~~~~~~el~~~~---~~vl~~ 100 (434)
T 1x54_A 78 VKADERAPGGAEVHVEK---LEVIQA 100 (434)
T ss_dssp EEECTTSGGGEEEEEEE---EEEEEC
T ss_pred EEecCCCCccEEEEEeE---EEEeec
Confidence 65553 378888876 555543
No 59
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=90.27 E-value=0.29 Score=39.52 Aligned_cols=59 Identities=14% Similarity=0.042 Sum_probs=42.0
Q ss_pred ceEEEEEEEecCCceeecCCcEEEEEEEE------eC-CC--------eEEEEEecCCCC----CCCCCCEEEEeeeEEE
Q psy3603 44 NVNVTCIVLDISPRVTLKENREVRTLKVA------DS-TA--------CINLSLWDEPGA----LLHPGDIVRLTKCYAQ 104 (264)
Q Consensus 44 nVnv~fiVle~~~~r~TKdGg~V~tL~LA------De-TG--------sI~ltLWdd~ad----~Ik~GDIIrI~ngyVs 104 (264)
.|.+++.|..-.+.+.+.+| .|+++.|| |+ +| -+++++|+..++ .|+.||.|.|.| +.+
T Consensus 17 ~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeG-rL~ 94 (128)
T 4dam_A 17 MICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQG-RLK 94 (128)
T ss_dssp EEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEE-EEE
T ss_pred EEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEEE-EEE
Confidence 36777777665555557778 88888886 21 33 478999996654 389999999995 554
No 60
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=90.27 E-value=0.11 Score=44.35 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=46.8
Q ss_pred ccceEEEEEEEecCCceeecCCcEEEEEEEE------eC-CC-------eEEEEEecCCCC----CCCCCCEEEEeeeEE
Q psy3603 42 IKNVNVTCIVLDISPRVTLKENREVRTLKVA------DS-TA-------CINLSLWDEPGA----LLHPGDIVRLTKCYA 103 (264)
Q Consensus 42 ~knVnv~fiVle~~~~r~TKdGg~V~tL~LA------De-TG-------sI~ltLWdd~ad----~Ik~GDIIrI~ngyV 103 (264)
+..|.+++.|..--+.+.+.+|..|++++|+ |+ || -|++++|+..++ .|+.||.|.|.| +.
T Consensus 6 ~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG-rL 84 (178)
T 1eqq_A 6 VNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEG-QL 84 (178)
T ss_dssp EEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECC-EE
T ss_pred eeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEE-EE
Confidence 4458888888887667678888888877775 22 35 479999996653 389999999994 55
Q ss_pred EE
Q psy3603 104 QI 105 (264)
Q Consensus 104 s~ 105 (264)
+.
T Consensus 85 ~~ 86 (178)
T 1eqq_A 85 RT 86 (178)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 61
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=89.62 E-value=0.46 Score=40.12 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=46.2
Q ss_pred ccceEEEEEEEecCCceeecCCcEEEEEEEEeC-------CC-------eEEEEEecC-CCCC----CCCCCEEEEeeeE
Q psy3603 42 IKNVNVTCIVLDISPRVTLKENREVRTLKVADS-------TA-------CINLSLWDE-PGAL----LHPGDIVRLTKCY 102 (264)
Q Consensus 42 ~knVnv~fiVle~~~~r~TKdGg~V~tL~LADe-------TG-------sI~ltLWdd-~ad~----Ik~GDIIrI~ngy 102 (264)
+..|.+++.|..--+.+.+.+|..|+++.||=. +| -|++++|+. .++. |+.|+.|.|.| +
T Consensus 23 mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeG-r 101 (169)
T 3lgj_A 23 LNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEG-K 101 (169)
T ss_dssp EEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE-E
T ss_pred eeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEE-E
Confidence 455888888887666666778888888877521 24 588999998 6543 89999999994 5
Q ss_pred EEE
Q psy3603 103 AQI 105 (264)
Q Consensus 103 Vs~ 105 (264)
.+.
T Consensus 102 L~~ 104 (169)
T 3lgj_A 102 LQT 104 (169)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 62
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=89.60 E-value=0.64 Score=45.88 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=52.2
Q ss_pred ceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCC--------CCCCCCCCEEEEeeeEEEEECCEEEEEEc
Q psy3603 44 NVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEP--------GALLHPGDIVRLTKCYAQIWRNCLTLYSS 115 (264)
Q Consensus 44 nVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~--------ad~Ik~GDIIrI~ngyVs~frG~LqL~Ig 115 (264)
.|.+.+.|..+.. . +++.-+.|.|.||.|++.+=.+. ...+..||+|.|.|--++.-.|.++|.+.
T Consensus 88 ~V~v~GwV~~~R~-----~-Gk~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~gelel~~~ 161 (529)
T 4ex5_A 88 EVAIAGRMMLKRV-----M-GKASFATVQDGSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTNKGELSVKCT 161 (529)
T ss_dssp EEEEEEEEEEEEE-----E-TTEEEEEEECSSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSCEEEEEE
T ss_pred EEEEEEEEEeeec-----C-CCeEEEEEEeCCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEE
Confidence 3889998887621 2 35888899999999999774321 12488999999996433334588888887
Q ss_pred CCceEEEecC
Q psy3603 116 KSGLIEKIGE 125 (264)
Q Consensus 116 r~G~IekVgE 125 (264)
+ |+.++.
T Consensus 162 ~---i~vLs~ 168 (529)
T 4ex5_A 162 Q---LRLLAK 168 (529)
T ss_dssp E---EEEEEC
T ss_pred E---EEEEec
Confidence 6 655544
No 63
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=88.65 E-value=0.54 Score=45.77 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=53.6
Q ss_pred cccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCC--------CCCCCCCCEEEEeeeEEEEECCEEEE
Q psy3603 41 GIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEP--------GALLHPGDIVRLTKCYAQIWRNCLTL 112 (264)
Q Consensus 41 G~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~--------ad~Ik~GDIIrI~ngyVs~frG~LqL 112 (264)
|+. |.+.+.|..+.. . +++.-+.|.|.||.|++.+=.+. ...+..||+|.|.|--...-.|.++|
T Consensus 56 ~~~-V~v~Gwv~~~R~-----~-gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~~ge~ei 128 (493)
T 3a74_A 56 QIE-VAVAGRIMTKRG-----M-GKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTKVGELSI 128 (493)
T ss_dssp CCE-EEEEEEEEEEEE-----E-TTEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEE
T ss_pred CCE-EEEEEEEEEEec-----C-CCcEEEEEEECCEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCCCcEEE
Confidence 444 899999887531 2 35788999999999999885321 12488999999996433334588888
Q ss_pred EEcCCceEEEecC
Q psy3603 113 YSSKSGLIEKIGE 125 (264)
Q Consensus 113 ~Igr~G~IekVgE 125 (264)
.+.+ |+.++.
T Consensus 129 ~~~~---i~vl~~ 138 (493)
T 3a74_A 129 KVSS---YEFLTK 138 (493)
T ss_dssp EEEE---EEEEEC
T ss_pred EEEE---EEEccc
Confidence 8876 655554
No 64
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=88.58 E-value=0.75 Score=38.24 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=47.0
Q ss_pred cccceEEEEEEEecCCceeecCCcEEEEEEEEe--------------CCCeEEEEEecCC-CC----CCCCCCEEEEeee
Q psy3603 41 GIKNVNVTCIVLDISPRVTLKENREVRTLKVAD--------------STACINLSLWDEP-GA----LLHPGDIVRLTKC 101 (264)
Q Consensus 41 G~knVnv~fiVle~~~~r~TKdGg~V~tL~LAD--------------eTGsI~ltLWdd~-ad----~Ik~GDIIrI~ng 101 (264)
++..|.+++.|..-.+ +.+ +|..|+++.||= +|--+++++|+.. ++ .|+.|+.|.|. |
T Consensus 5 ~~NkV~LiGrLg~DPe-r~t-~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~Ve-G 81 (148)
T 3k7u_C 5 SVNSVTLVGVVHDIQS-GFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVN-G 81 (148)
T ss_dssp CCCCEEEEEEEEEEEE-EES-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEEE-E
T ss_pred cCcEEEEEEEeccCCE-eee-CCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEEE-E
Confidence 3456899999988766 677 888898888752 2335899999986 54 38999999999 4
Q ss_pred EEEE
Q psy3603 102 YAQI 105 (264)
Q Consensus 102 yVs~ 105 (264)
+.+.
T Consensus 82 rL~~ 85 (148)
T 3k7u_C 82 RLRL 85 (148)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 65
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=88.41 E-value=0.56 Score=40.80 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=45.9
Q ss_pred cccceEEEEEEEecCCceeecCCcEEEEEEEEe------C-CC-------eEEEEEecC-CCC----CCCCCCEEEEeee
Q psy3603 41 GIKNVNVTCIVLDISPRVTLKENREVRTLKVAD------S-TA-------CINLSLWDE-PGA----LLHPGDIVRLTKC 101 (264)
Q Consensus 41 G~knVnv~fiVle~~~~r~TKdGg~V~tL~LAD------e-TG-------sI~ltLWdd-~ad----~Ik~GDIIrI~ng 101 (264)
.++.|.+++.|..--+.+.+.+|..|++++||= + +| -|++++|+. .++ .|+.|+.|.|.+
T Consensus 25 ~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~VeG- 103 (193)
T 3pgz_A 25 SLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIEG- 103 (193)
T ss_dssp CEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE-
T ss_pred hcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEEE-
Confidence 455688888888766666677888998888862 1 34 389999995 443 389999999994
Q ss_pred EEE
Q psy3603 102 YAQ 104 (264)
Q Consensus 102 yVs 104 (264)
+.+
T Consensus 104 rL~ 106 (193)
T 3pgz_A 104 QLQ 106 (193)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 66
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=88.18 E-value=3.1 Score=35.57 Aligned_cols=83 Identities=20% Similarity=0.249 Sum_probs=62.3
Q ss_pred cccccccccccc--eEEEEEEEecCCceeecCCcEEEEEEEEeCC-CeEEEEEecCC---CCCCCCCCEEEEeeeEEEEE
Q psy3603 33 VYIKDLHVGIKN--VNVTCIVLDISPRVTLKENREVRTLKVADST-ACINLSLWDEP---GALLHPGDIVRLTKCYAQIW 106 (264)
Q Consensus 33 ikIkDLkpG~kn--Vnv~fiVle~~~~r~TKdGg~V~tL~LADeT-GsI~ltLWdd~---ad~Ik~GDIIrI~ngyVs~f 106 (264)
+.|+.|..|... +.+.++|+-++..-......+|.-++-.|.. -.|.+++|... ...++.|......||.|+.|
T Consensus 12 llisqlqvgknrfsfkfegrvvyksstfqnqqdskyffitaqdannqeinlsfwqkvdqsyqtlkvgqyyyfiggevkqf 91 (213)
T 3u58_A 12 LLISQLQVGKNRFSFKFEGRVVYKSSTFQNQQDSKYFFITAQDANNQEINLSFWQKVDQSYQTLKVGQYYYFIGGEVKQF 91 (213)
T ss_dssp ECGGGCCTTSCTTSEEEEEEEEEECCCBCCSTTCCBEEEEEECTTSCEEEEEECSSHHHHHHHCCTTCEEEEESCEEEEC
T ss_pred hhhhhhhhccceeeEEeeeEEEEeeccccccccccEEEEEeecCCCceechHHHHHhhhhhheeeeceEEEEEcccHhhh
Confidence 567888777543 5566677766533223344678888889984 56999999743 34599999999999999999
Q ss_pred CCEEEEEEc
Q psy3603 107 RNCLTLYSS 115 (264)
Q Consensus 107 rG~LqL~Ig 115 (264)
++.|+|...
T Consensus 92 knnlelkfk 100 (213)
T 3u58_A 92 KNNLELKFK 100 (213)
T ss_dssp SSSEEEEEC
T ss_pred ccceEEEEe
Confidence 999999865
No 67
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=88.13 E-value=1.1 Score=41.03 Aligned_cols=64 Identities=22% Similarity=0.198 Sum_probs=47.5
Q ss_pred ccccceEEEEEEEecCCceeecCCcEEEEEEEE------eCCC-------eEEEEEecCC----CCCCCCCCEEEEeeeE
Q psy3603 40 VGIKNVNVTCIVLDISPRVTLKENREVRTLKVA------DSTA-------CINLSLWDEP----GALLHPGDIVRLTKCY 102 (264)
Q Consensus 40 pG~knVnv~fiVle~~~~r~TKdGg~V~tL~LA------DeTG-------sI~ltLWdd~----ad~Ik~GDIIrI~ngy 102 (264)
..+..|.+++.|..--+.+.+.+|..|+.+.|+ |+.| -|++++|+.. .+ |+.||.|.|.| +
T Consensus 127 ~mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~G-r 204 (301)
T 1se8_A 127 GAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMG-R 204 (301)
T ss_dssp TCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEE-E
T ss_pred cceeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEE-E
Confidence 345557888888876666667788899888886 3334 4899999954 35 99999999995 5
Q ss_pred EEE
Q psy3603 103 AQI 105 (264)
Q Consensus 103 Vs~ 105 (264)
.+.
T Consensus 205 L~~ 207 (301)
T 1se8_A 205 LVN 207 (301)
T ss_dssp EEE
T ss_pred Eee
Confidence 544
No 68
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=88.10 E-value=1.5 Score=39.91 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=45.3
Q ss_pred ccceEEEEEEEecCCceeecCCcEEEEEEEEe------CCC-------eEEEEEecCCC----CC-CCCCCEEEEeeeEE
Q psy3603 42 IKNVNVTCIVLDISPRVTLKENREVRTLKVAD------STA-------CINLSLWDEPG----AL-LHPGDIVRLTKCYA 103 (264)
Q Consensus 42 ~knVnv~fiVle~~~~r~TKdGg~V~tL~LAD------eTG-------sI~ltLWdd~a----d~-Ik~GDIIrI~ngyV 103 (264)
+..|.+++.|..--+.+.+.+|..|+++.|+= ++| -|++++|+..+ +. |+.|+.|.|.| +.
T Consensus 5 mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG-~L 83 (301)
T 1se8_A 5 MNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEG-TL 83 (301)
T ss_dssp EEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEE-EE
T ss_pred eeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEE-EE
Confidence 45588888888766666677888998888852 234 38999999654 34 79999999994 55
Q ss_pred E
Q psy3603 104 Q 104 (264)
Q Consensus 104 s 104 (264)
+
T Consensus 84 ~ 84 (301)
T 1se8_A 84 E 84 (301)
T ss_dssp E
T ss_pred E
Confidence 4
No 69
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=87.30 E-value=2.1 Score=42.49 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=54.2
Q ss_pred cccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCC-----CCCCCCCCEEEEeeeEEEEE--------C
Q psy3603 41 GIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEP-----GALLHPGDIVRLTKCYAQIW--------R 107 (264)
Q Consensus 41 G~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~-----ad~Ik~GDIIrI~ngyVs~f--------r 107 (264)
|+. |.+.|.|..+. +-|.+.-+.|.|.||.|++.+=.+. +..+..||+|.|.| .+..- .
T Consensus 16 g~~-V~l~GwV~~~R------~~G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G-~v~~~~~~~~~~~~ 87 (580)
T 1l0w_A 16 GEE-VVLEGWVNRRR------DLGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKG-LVRLRPEPNPRLAT 87 (580)
T ss_dssp TCE-EEEEEEEEEEE------ECSSCEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEE-EEEECSSCCTTSTT
T ss_pred CCE-EEEEEEEEEEe------cCCCeEEEEEEECCeeEEEEEeCChhHHHHHhcCCCCcEEEEEE-EEEcCCCcCccCCC
Confidence 554 89999888753 2246888999999999999884332 23488999999995 56653 4
Q ss_pred CEEEEEEcCCceEEEecC
Q psy3603 108 NCLTLYSSKSGLIEKIGE 125 (264)
Q Consensus 108 G~LqL~Igr~G~IekVgE 125 (264)
|.++|.+.+ |+.++.
T Consensus 88 ge~Ei~~~~---i~vl~~ 102 (580)
T 1l0w_A 88 GRVEVELSA---LEVLAE 102 (580)
T ss_dssp TTEEEEEEE---EEEEEC
T ss_pred ccEEEEEeE---EEEecc
Confidence 778888876 665554
No 70
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=85.85 E-value=2.1 Score=37.85 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=47.9
Q ss_pred cccceEEEEEEEecCCceeecCCcEEEEEEEEe----------CCCeEEEEEecCCCC---CCCCCCEEEEeeeEEEE
Q psy3603 41 GIKNVNVTCIVLDISPRVTLKENREVRTLKVAD----------STACINLSLWDEPGA---LLHPGDIVRLTKCYAQI 105 (264)
Q Consensus 41 G~knVnv~fiVle~~~~r~TKdGg~V~tL~LAD----------eTGsI~ltLWdd~ad---~Ik~GDIIrI~ngyVs~ 105 (264)
.+..|.+++.|..--+.+.+.+|..|+.+.||= +|--|++++|+..++ .++.||.|.|.| +.+.
T Consensus 127 ~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~~l~KG~~V~V~G-~l~~ 203 (264)
T 2fxq_A 127 ALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWASELRKGDGLLVIG-RLVN 203 (264)
T ss_dssp CCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHTTCCTTCEEEEEE-EEEE
T ss_pred ceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhhhcCCCCEEEEEE-EEEe
Confidence 455688999888766666778899999888862 233599999985432 689999999994 5543
No 71
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=85.69 E-value=2.5 Score=33.69 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=48.5
Q ss_pred cccccccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCC--CCCCCCCCEEEEeeeEEEEECCEEEE
Q psy3603 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEP--GALLHPGDIVRLTKCYAQIWRNCLTL 112 (264)
Q Consensus 35 IkDLkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~--ad~Ik~GDIIrI~ngyVs~frG~LqL 112 (264)
++++..+.. |.+.+.|++.- ++.. .++.|.||+|.+-+=++. ...+.|+|.|+|. |.+.-.-...+|
T Consensus 31 a~~~~Dd~~-V~L~G~Iv~~~------~~d~---Y~F~D~TG~I~VeId~~~w~g~~v~p~~~Vri~-GevDkd~~~~eI 99 (109)
T 1nnx_A 31 AKSLRDDTW-VTLRGNIVERI------SDDL---YVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQ-GEVDKDWNSVEI 99 (109)
T ss_dssp HTTSCSSEE-EEEEEEEEEEE------ETTE---EEEEETTEEEEEECCGGGSTTCCCCTTSCEEEE-EEEEEETTEEEE
T ss_pred HhhCcCCCe-EEEEEEEEEEe------CCCe---EEEECCCccEEEEEChhhcCCcccCCCCEEEEE-EEECCCCCceEE
Confidence 344555564 88888887642 1233 478999999999873322 3458999999999 567654456677
Q ss_pred EEcC
Q psy3603 113 YSSK 116 (264)
Q Consensus 113 ~Igr 116 (264)
.+.+
T Consensus 100 dV~~ 103 (109)
T 1nnx_A 100 DVKQ 103 (109)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 72
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=85.10 E-value=2.4 Score=42.07 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=54.2
Q ss_pred cccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecC------CCCCCCCCCEEEEeeeEEEEE--------
Q psy3603 41 GIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDE------PGALLHPGDIVRLTKCYAQIW-------- 106 (264)
Q Consensus 41 G~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd------~ad~Ik~GDIIrI~ngyVs~f-------- 106 (264)
|+. |.+.+.|..+. +-|.+.-+.|.|.||.|++.+=.+ .+..+..||+|.|.| .+..-
T Consensus 15 g~~-V~l~GwV~~~R------~~G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G-~v~~~~~~~~n~~ 86 (585)
T 1c0a_A 15 GQQ-VTLCGWVNRRR------DLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTG-TVRARDEKNINRD 86 (585)
T ss_dssp TCE-EEEEEEEEEEE------ECSSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEE-EEEECCTTTCCTT
T ss_pred CCE-EEEEEEEEEEe------cCCCcEEEEEEECCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEe-EEEccCccccccc
Confidence 554 89999888753 224688899999999999987322 124588999999995 56654
Q ss_pred --CCEEEEEEcCCceEEEecC
Q psy3603 107 --RNCLTLYSSKSGLIEKIGE 125 (264)
Q Consensus 107 --rG~LqL~Igr~G~IekVgE 125 (264)
.|.++|.+.+ |+.++.
T Consensus 87 ~~~geiEl~~~~---i~vl~~ 104 (585)
T 1c0a_A 87 MATGEIEVLASS---LTIINR 104 (585)
T ss_dssp STTTTEEEEEEE---EEEEEC
T ss_pred CCCccEEEEEeE---EEEEec
Confidence 4778998886 666554
No 73
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=83.74 E-value=5 Score=39.16 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=53.6
Q ss_pred Ccccccccc-cccccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecC-CCCCCCCCCEEEEeeeEE
Q psy3603 28 KEAMDVYIK-DLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDE-PGALLHPGDIVRLTKCYA 103 (264)
Q Consensus 28 ~~~~~ikIk-DLkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd-~ad~Ik~GDIIrI~ngyV 103 (264)
...++..|+ ||++++- +++++.|+.+... ++ .-..|.|-|.||.-.+.+.-+ ....+++|+|++|.....
T Consensus 207 ~~~~f~~L~~di~~~~f-~DLv~qVv~~~~~----d~-~~~~L~VwDgT~~~~~~~~~~~~fP~~~~G~Vlri~~~~~ 278 (495)
T 1jb7_A 207 SSDMYTALNKAQAQKGD-FDVVAKILQVHEL----DE-YTNELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATY 278 (495)
T ss_dssp CGGGSCCGGGGGGCSSC-EEEEEEEEEEEEC----SS-SEEEEEEEETTCCEEEEEEETTTCTTCCTTCEEEEEEEEE
T ss_pred cccchhhhhhhhccCCc-eeEEEEEeEEecc----CC-CeEEEEEEeCCCCCcceeeccccCCceeeEEEEEEecCcc
Confidence 345678999 9999996 9999999998533 22 357889999999988886653 234578899999986543
No 74
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=78.30 E-value=11 Score=32.16 Aligned_cols=74 Identities=14% Similarity=0.090 Sum_probs=54.6
Q ss_pred cccccccccccccc-cceEEEEEEEecCCceeecCCcEEEEEEEEeCCCe-EEEEEecCCCCC-CCCCCEEEEeeeEEEE
Q psy3603 29 EAMDVYIKDLHVGI-KNVNVTCIVLDISPRVTLKENREVRTLKVADSTAC-INLSLWDEPGAL-LHPGDIVRLTKCYAQI 105 (264)
Q Consensus 29 ~~~~ikIkDLkpG~-knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGs-I~ltLWdd~ad~-Ik~GDIIrI~ngyVs~ 105 (264)
......|.+|++|. +++-+.++|+-.- +.+...=.++.+.|+.|+ .-+++.+-..+. +..||.|.|-..+++.
T Consensus 60 ~l~~~~l~~L~~G~N~g~vv~gKVv~~i----~~e~~vP~~f~~vD~~g~c~avsVYNl~~~~G~~iGDsV~IpeP~v~~ 135 (166)
T 2xvs_A 60 TLELKPLSTLQPGVNSGAVILGKVVFSL----TTEEKVPFTFGLVDSDGPCYAVMVYNIVQSWGVLIGDSVAIPEPNLRL 135 (166)
T ss_dssp CCEECCGGGCCSEECTTEEEEEEEEEEE----CCTTCCSEEEEEESSSSCCEEEEECCCCSSCCCCTTCEEEEESCEEEE
T ss_pred eeeeeeHHHcccccCCCcEEEEEEEEEe----cCCCCCceEEEEECCCCCEEEEEEEeccCCcceEecCEEEeCCCcEEE
Confidence 46668999999994 4466777776542 223333378889999988 688999866555 8899999999888875
Q ss_pred E
Q psy3603 106 W 106 (264)
Q Consensus 106 f 106 (264)
.
T Consensus 136 v 136 (166)
T 2xvs_A 136 H 136 (166)
T ss_dssp E
T ss_pred E
Confidence 4
No 75
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=65.58 E-value=7.7 Score=32.95 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=45.6
Q ss_pred ccccccceEEEEEEEecCCceeecCCcEEEEEEEEeC--------------CCeEEEEEecCC-CC----CCCCCCEEEE
Q psy3603 38 LHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADS--------------TACINLSLWDEP-GA----LLHPGDIVRL 98 (264)
Q Consensus 38 LkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADe--------------TGsI~ltLWdd~-ad----~Ik~GDIIrI 98 (264)
+..+++.|.+++.+..-.+.+.+. ..|.++.||=. |--+++++|+.. ++ .++.|+.|.|
T Consensus 18 ~a~smNkViLiGrLg~DPElR~t~--~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~V~V 95 (164)
T 3k81_C 18 CCKSVNSVTLVGVVHDIQSGFVYE--DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCV 95 (164)
T ss_dssp --CCEEEEEEEEEEECCCCEESSS--CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEEEE
T ss_pred HhcCCcEEEEEEEeccCCEEEEcC--ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCEEEE
Confidence 345566688888888776665554 67777776522 334999999987 54 3899999999
Q ss_pred eeeEEEE
Q psy3603 99 TKCYAQI 105 (264)
Q Consensus 99 ~ngyVs~ 105 (264)
.| ..+.
T Consensus 96 eG-rL~t 101 (164)
T 3k81_C 96 NG-RLRL 101 (164)
T ss_dssp CC-EEEE
T ss_pred EE-EEEe
Confidence 94 5544
No 76
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=64.68 E-value=0.47 Score=43.57 Aligned_cols=20 Identities=35% Similarity=0.742 Sum_probs=16.3
Q ss_pred eecceeeeeeeeeeeeccCC
Q psy3603 221 FSNFECGVYLDMCLRRRTSH 240 (264)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~ 240 (264)
|=.=||-+|+||||.+++.+
T Consensus 64 ll~qE~~~Y~DmCL~k~~Nf 83 (275)
T 4gkp_A 64 LFKEDLHVYIDFCLKRRENF 83 (275)
T ss_dssp GGGTHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHhccCCCc
Confidence 34459999999999999754
No 77
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=63.13 E-value=11 Score=29.16 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=45.2
Q ss_pred ccccCcccccccccccccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEE---ec---CCCCCCCCCCEEE
Q psy3603 24 INRKKEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSL---WD---EPGALLHPGDIVR 97 (264)
Q Consensus 24 i~~~~~~~~ikIkDLkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltL---Wd---d~ad~Ik~GDIIr 97 (264)
++|..-.....+++++.|+. +.++|..+..- +-+..+-.....|-+.... |. +..+.++.||.|+
T Consensus 5 l~P~~vn~~~~~~~l~~G~i---~~G~V~~v~~f------G~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~ 75 (119)
T 1wi5_A 5 SSGKNVNRVLSAEALKPGML---LTGTVSSLEDH------GYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLN 75 (119)
T ss_dssp CCCSCSSCCCCTTTCCTTCE---EEEEEEEECSS------EEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEE
T ss_pred cCHHHhhccccHhcCCCCCE---EEEEEEEEeCc------eEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEE
Confidence 44554455566788999884 66778777422 4555443111112222222 31 3346799999999
Q ss_pred EeeeEEEEE--CCEEEEEEc
Q psy3603 98 LTKCYAQIW--RNCLTLYSS 115 (264)
Q Consensus 98 I~ngyVs~f--rG~LqL~Ig 115 (264)
++ -++.- ++++.|.+.
T Consensus 76 vk--V~~vd~~~~~i~Lslk 93 (119)
T 1wi5_A 76 CI--VEKVKGNGGVVSLSVG 93 (119)
T ss_dssp EE--EEECCTTSCEEEEECC
T ss_pred EE--EEEEeCCCCEEEEEEc
Confidence 87 23332 466777664
No 78
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=62.91 E-value=49 Score=27.19 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=45.5
Q ss_pred cccceEEEEEEEecCCceeecC-CcEEEEEEEEeCCCeEEEEEecCCCCCCCCCCEEEEeee
Q psy3603 41 GIKNVNVTCIVLDISPRVTLKE-NREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKC 101 (264)
Q Consensus 41 G~knVnv~fiVle~~~~r~TKd-Gg~V~tL~LADeTGsI~ltLWdd~ad~Ik~GDIIrI~ng 101 (264)
++ .|.+-+.|..=+.. |+ .+.-++..|.|...+|.++.=+-..++|++|.-|.+.|.
T Consensus 28 g~-~iRvgG~V~~GSv~---r~~~~~~v~F~vtD~~~~v~V~Y~GilPDlFrEGqgVVa~G~ 85 (136)
T 1sr3_A 28 GQ-RLRVGGMVMPGSVQ---RDPNSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGE 85 (136)
T ss_dssp TS-EEEEEEEECTTTCE---ECSSSSEEEEEEECSSCEEEEEEESCCCTTCCTTSEEEEEEE
T ss_pred CC-EEEEeeEEeCCcEE---EcCCCCEEEEEEEeCCcEEEEEECCCCCccccCCCeEEEEEE
Confidence 44 49999999864433 33 245788899999999999988988999999999999853
No 79
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=57.56 E-value=7.5 Score=40.06 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=48.8
Q ss_pred cEEEEEEEEeC---CCeEEEEEecCCC---CCCCCCCEEEEeeeEEEEEC-----CEEEEEEcCCceEEEec
Q psy3603 64 REVRTLKVADS---TACINLSLWDEPG---ALLHPGDIVRLTKCYAQIWR-----NCLTLYSSKSGLIEKIG 124 (264)
Q Consensus 64 g~V~tL~LADe---TGsI~ltLWdd~a---d~Ik~GDIIrI~ngyVs~fr-----G~LqL~Igr~G~IekVg 124 (264)
.+++.++|.|- -.++.+++|+... ..|++|..++|++-.++..+ +.+||+.++.+.++.+.
T Consensus 510 tp~~klRV~d~~~~~k~~iLSIW~P~edl~s~L~EG~~y~iy~L~~s~s~~~~~~~~lqLtAtk~T~~~~L~ 581 (738)
T 1miu_A 510 TTVWKLRVTSYKKKEKSALLSIWRPSSDLSSLLTEGKRYRIYHLAVSKSKSKFERPSIQLTATKRTQYQQLP 581 (738)
T ss_dssp CCEEEEEEEESSSSCCCEEEEEESCCHHHHHHCCSSCEEEEEEECCCCCCCSSSCCSCEEEEEEEEEEEEEC
T ss_pred ceeEEEEEEeccCCCceEEEEEeCCChHHHhhccCCcEEEEEEeeccCCCccCccceEEEeecccceeEECC
Confidence 57888999983 2578999999654 34999999999987665554 46999999988888875
No 80
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=57.26 E-value=43 Score=32.66 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=45.8
Q ss_pred cccccccccccccceEEEEEEEecCCcee------ecCC--------cEE----EEEEEEeCCCeEEEEEecCCCCCCCC
Q psy3603 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVT------LKEN--------REV----RTLKVADSTACINLSLWDEPGALLHP 92 (264)
Q Consensus 31 ~~ikIkDLkpG~knVnv~fiVle~~~~r~------TKdG--------g~V----~tL~LADeTGsI~ltLWdd~ad~Ik~ 92 (264)
...+|.||+.|+. +-++|.|....+.+- .++- ..| -.+.|-|+||.|++.. .-..+.|-.
T Consensus 85 ~i~klldl~~ge~-c~viGTvyk~m~lKPsIL~eis~e~~~~~~~~~~~y~~~~D~l~LEDesGRv~L~g-~~~~~~lVT 162 (476)
T 3e0j_A 85 GVKKLCELQPEEK-CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKG-TIDVSKLVT 162 (476)
T ss_dssp CBCCSSSCCTTCC-EEEEEEEEEEC----------------------CCCCCSSCEEEEECSSCEEEEEE-SCCTTTCCT
T ss_pred cchHhhcccCCCE-EEEEEEEEecccCCCcHHHHHhhhhccCCCCccccccCCCceEEEECCCCEEEEEE-EcccccccC
Confidence 3457889999986 999999975321110 1110 011 2699999999999987 334456889
Q ss_pred CCEEEEee
Q psy3603 93 GDIVRLTK 100 (264)
Q Consensus 93 GDIIrI~n 100 (264)
|-||-|.|
T Consensus 163 G~VvaV~G 170 (476)
T 3e0j_A 163 GTVLAVFG 170 (476)
T ss_dssp TCEEEEEE
T ss_pred CcEEEEEE
Confidence 99999996
No 81
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=57.21 E-value=13 Score=33.35 Aligned_cols=61 Identities=10% Similarity=0.171 Sum_probs=42.7
Q ss_pred ccceEEEEEEEecCCceeecCCcEEEEEEEEe--------------CCCeEEEEEecCC--CC---CCCCCCEEEEeeeE
Q psy3603 42 IKNVNVTCIVLDISPRVTLKENREVRTLKVAD--------------STACINLSLWDEP--GA---LLHPGDIVRLTKCY 102 (264)
Q Consensus 42 ~knVnv~fiVle~~~~r~TKdGg~V~tL~LAD--------------eTGsI~ltLWdd~--ad---~Ik~GDIIrI~ngy 102 (264)
.+.|.+++.+ .--+.+.+. |..|.++.||= +|--+++++|+.. ++ .++.|+.|.|.| +
T Consensus 146 lNkV~LiGrL-~DPElR~t~-G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AEi~~~L~KG~~V~VeG-r 222 (257)
T 4dni_A 146 VNSVTLVGVV-HDIQSGFVY-EDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNG-R 222 (257)
T ss_dssp EEEEEEEEEE-EEEEEEEET-TEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHHHHHHCCTTCEEEEEE-E
T ss_pred cCEEEEEEEc-CCCEEEEeC-CcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHHHHhhCCCCCEEEEEE-E
Confidence 3457788888 333444567 98999888852 1224899999977 43 389999999994 4
Q ss_pred EEE
Q psy3603 103 AQI 105 (264)
Q Consensus 103 Vs~ 105 (264)
.+.
T Consensus 223 L~t 225 (257)
T 4dni_A 223 LRL 225 (257)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 82
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=57.20 E-value=3.3 Score=29.35 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=21.5
Q ss_pred eeccCCceeE-----EEeeccccccccCceee
Q psy3603 235 RRRTSHSHWF-----RLTAEKHSGEIRPGTVR 261 (264)
Q Consensus 235 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 261 (264)
|.+.||..|. ++|.-.|.++|.+||++
T Consensus 23 r~~GSH~~~~~~~~~~~~vP~h~~ei~~g~lk 54 (70)
T 1whz_A 23 MAKGGHRLYTHPDGRIVVVPFHSGELPKGTFK 54 (70)
T ss_dssp EEETTEEEEECTTSCEEEEECSSSSCCHHHHH
T ss_pred CCCCCCceEecCCCCeeEecCCcCcCCHHHHH
Confidence 6678898886 46777788899999875
No 83
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=53.68 E-value=27 Score=27.27 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=43.7
Q ss_pred EEEEEecCCcee-ecCCcEEEEEEEEeCCCeEEEEEecCCC-----CCCCCCCEEEEeeeEEEEECCEEEEEEcCCceEE
Q psy3603 48 TCIVLDISPRVT-LKENREVRTLKVADSTACINLSLWDEPG-----ALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIE 121 (264)
Q Consensus 48 ~fiVle~~~~r~-TKdGg~V~tL~LADeTGsI~ltLWdd~a-----d~Ik~GDIIrI~ngyVs~frG~LqL~Igr~G~Ie 121 (264)
.+-|.++...+. +.-|.....++|.-..++-.+.|=..-+ +.++.||||.|. + ..|.+.
T Consensus 15 EGEV~ei~~~~~~~~~~~~~~~itLkT~d~ek~l~lg~~i~e~L~kekV~~GDVI~Id-~--------------~sG~V~ 79 (95)
T 2cqa_A 15 EGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITID-K--------------ATGKIS 79 (95)
T ss_dssp EEEEEEEEEECTTSSSSSCEEEEEEECSSSEEEEEECSHHHHHHHHTTCCTTSEEEEE-T--------------TTTEEE
T ss_pred EEEEEEEEEeecCCCCcceEEEEEEEecCCcEEEeCCHHHHHHHHHcCceeCCEEEEE-c--------------cCCEEE
Confidence 344555543221 1233456677776666666666543211 348899999998 3 567899
Q ss_pred EecCceeeecCCCCC
Q psy3603 122 KIGEFCMVFNENLDM 136 (264)
Q Consensus 122 kVgEf~~~fnE~pNi 136 (264)
++|.- +.+..++|+
T Consensus 80 klGRs-~~~a~~yDl 93 (95)
T 2cqa_A 80 KLGRS-FTRARSGPS 93 (95)
T ss_dssp EEECC-CCCCCCCSC
T ss_pred EEEEe-ecccccccc
Confidence 98873 455555655
No 84
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=52.88 E-value=22 Score=31.97 Aligned_cols=80 Identities=11% Similarity=0.069 Sum_probs=51.5
Q ss_pred ccccCcccccccccccccccceEEEEEEEecCCceeecCC-cEEEEEEEEeC-------CC-eEEEEEec-CCCC----C
Q psy3603 24 INRKKEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKEN-REVRTLKVADS-------TA-CINLSLWD-EPGA----L 89 (264)
Q Consensus 24 i~~~~~~~~ikIkDLkpG~knVnv~fiVle~~~~r~TKdG-g~V~tL~LADe-------TG-sI~ltLWd-d~ad----~ 89 (264)
|+|.-+++..-+..++- ++.|-+++++..- +.+.|.+| -.+.++.|+=. +. -|.+++|+ ..++ .
T Consensus 13 ~~~~~~~~~~~~~~~r~-~N~viLiGrLtrd-ElRyT~~g~~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~y 90 (257)
T 4dni_A 13 VAPNAPEEGEVAAHWRC-VNHCVMLGVVQNI-QEGFVFEDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQ 90 (257)
T ss_dssp SSCCCCCHHHHTTTSCC-SEEEEEEEEEEEE-EEEEETTEEEEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHH
T ss_pred cCCCCCcccchhhhhhc-CcEEEEEEEEece-EEEECCCCCEEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHh
Confidence 34444443333333443 4458899999998 88778777 45566666432 22 36777999 5554 3
Q ss_pred CCCCCEEEEeeeEEEEE
Q psy3603 90 LHPGDIVRLTKCYAQIW 106 (264)
Q Consensus 90 Ik~GDIIrI~ngyVs~f 106 (264)
++.|+-|.|. |+.+.|
T Consensus 91 l~kG~~V~Ve-GrL~~~ 106 (257)
T 4dni_A 91 LRDGEWFLVT-GRLRMV 106 (257)
T ss_dssp CCTTCEEEEE-EEEEEE
T ss_pred ccCCCEEEEE-EEEEEe
Confidence 8999999999 566664
No 85
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=52.75 E-value=3.2 Score=34.87 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=19.6
Q ss_pred EEEEEEEeCCCeEEEEEecCCC
Q psy3603 66 VRTLKVADSTACINLSLWDEPG 87 (264)
Q Consensus 66 V~tL~LADeTGsI~ltLWdd~a 87 (264)
.+.+.|+|.||++.++++++.+
T Consensus 80 ~l~~~i~D~Tg~~~~t~F~~~a 101 (181)
T 1l1o_C 80 ILSVNIADFQENQWVTCFQESA 101 (181)
T ss_dssp EEEEEEECSSCEEEEEEEHHHH
T ss_pred EEEEEEEeCCCCEEEEEEhHHH
Confidence 4799999999999999999764
No 86
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=50.54 E-value=95 Score=27.35 Aligned_cols=73 Identities=16% Similarity=0.332 Sum_probs=54.9
Q ss_pred EEEEEEecCCcee--ecCCcEEEEEEEEeCCCeEEEEEecCC-CCCCCCCCEEEEeeeEEEEECCEEEEEEcCCceEEEe
Q psy3603 47 VTCIVLDISPRVT--LKENREVRTLKVADSTACINLSLWDEP-GALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKI 123 (264)
Q Consensus 47 v~fiVle~~~~r~--TKdGg~V~tL~LADeTGsI~ltLWdd~-ad~Ik~GDIIrI~ngyVs~frG~LqL~Igr~G~IekV 123 (264)
....||.+.+|=+ +..++.+..++||-+|--.++.+++-. -+.|-+.-+|.|++ |. .++|-|+++-. +.+..+
T Consensus 12 ~~VmVLkaTepF~Ye~~E~k~MFHATVATetqfF~VKVfn~~LKeKF~pk~iI~ISd-Y~-~~~gfLEi~~~--SsVse~ 87 (204)
T 3rlo_A 12 KEVMVLNATESFVYEPKEQKKMFHATVATENEVFRVKVFNIDLKEKFTPKKIIAIAN-YV-CRNGFLEVYPF--TLVADV 87 (204)
T ss_dssp EEEEEEEECCCEEEETTTTEEEEEEEEECSSCEEEEEECCGGGTTTTCTTCEEEEES-CE-EETTEEEECTT--SEEEEC
T ss_pred eEEEEEeccCCceecccccceEEEEEEeeccceEEEEEecchhhhhcCCCcEEEEEe-cc-cccceEEEecc--cEEEEc
Confidence 4566787776643 345678999999999999999999954 45699999999996 44 56888887644 344444
No 87
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=50.52 E-value=84 Score=24.16 Aligned_cols=59 Identities=10% Similarity=-0.003 Sum_probs=45.7
Q ss_pred ccccceEEEEEEEecCCceeecCCcEEEEEEEEeC---CCeEEEEEecCCCCCCCCCCEEEEeee
Q psy3603 40 VGIKNVNVTCIVLDISPRVTLKENREVRTLKVADS---TACINLSLWDEPGALLHPGDIVRLTKC 101 (264)
Q Consensus 40 pG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADe---TGsI~ltLWdd~ad~Ik~GDIIrI~ng 101 (264)
++++ |.+-+.|.+=+..+ ...+.-++..|.|. ..+|.+..=+-..++|++|.-|.+.|.
T Consensus 7 ~~~~-iRvgG~V~~GSv~r--~~~~~~v~F~vtD~~~~~~~v~V~Y~GilPDlFrEGqgVV~~G~ 68 (94)
T 2kct_A 7 KLHT-VRLFGTVAADGLTM--LDGAPGVRFRLEDKDNTSKTVWVLYKGAVPDTFKPGVEVIIEGG 68 (94)
T ss_dssp TTCC-EEEEEEECSTTCEE--CTTSSEEEEEEECSSCTTCEEEEEEESCCCTTCCTTCEEEEEEE
T ss_pred CCCe-EEEeeEEeCCeEEe--cCCCCEEEEEEEcCCCCCcEEEEEECCCCCccccCCCeEEEEEE
Confidence 4454 99999988755442 11245678899998 889999988988999999999999853
No 88
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=48.37 E-value=82 Score=25.79 Aligned_cols=56 Identities=18% Similarity=0.013 Sum_probs=43.3
Q ss_pred ceEEEEEEEecCCceeecCCcEEEEEEEEe-CCCeEEEEEecCCCCCCCCCCEEEEeee
Q psy3603 44 NVNVTCIVLDISPRVTLKENREVRTLKVAD-STACINLSLWDEPGALLHPGDIVRLTKC 101 (264)
Q Consensus 44 nVnv~fiVle~~~~r~TKdGg~V~tL~LAD-eTGsI~ltLWdd~ad~Ik~GDIIrI~ng 101 (264)
.|.+-+.|.+=+..+ ...+.-++..|.| ...+|.++.=+-..++|++|.-|.+.|.
T Consensus 34 ~iRvgG~V~~GSv~r--~~~~~~v~F~vtD~~~~~v~V~Y~GilPDlFrEGqgVVa~G~ 90 (136)
T 1j6q_A 34 RIRVGGMVTVGSMVR--DPNSLHVQFAVHDSLGGEILVTYDDLLPDLFREGQGIVAQGV 90 (136)
T ss_dssp EEEEEEEECTTCCEE--CTTSSCEEEEEECTTCCCEEEEECSCCTTSCCSSSEEEEEEE
T ss_pred EEEEeEEEeCCcEEe--cCCCCEEEEEEEcCCCCEEEEEECCCCCccccCCCeEEEEEE
Confidence 499999988754332 1124557889999 7888999888888899999999999853
No 89
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=47.20 E-value=46 Score=33.43 Aligned_cols=71 Identities=10% Similarity=0.078 Sum_probs=49.5
Q ss_pred cccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCC--------CCCCCCCEEEEeeeEEEEE------
Q psy3603 41 GIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPG--------ALLHPGDIVRLTKCYAQIW------ 106 (264)
Q Consensus 41 G~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~a--------d~Ik~GDIIrI~ngyVs~f------ 106 (264)
|+. |.+.+.|..+. ++ .-+.|.|.+|.|++.+=.+.. ..+..||+|.|.| .+..-
T Consensus 24 g~~-V~l~GwV~~~R------~~---~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G-~v~~~~~~~~n 92 (617)
T 4ah6_A 24 GQE-VTLCGWIQYRR------QN---TFLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSG-TVISRPAGQEN 92 (617)
T ss_dssp TCE-EEEEEEECCCC------TT---TEEEEECSSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEE-EEEECSTTCCC
T ss_pred CCE-EEEEEEeeeec------Ce---EEEEEEeCCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEE-EEEeCCccccC
Confidence 554 88999887642 33 356788999999998754332 1388999999995 56542
Q ss_pred ----CCEEEEEEcCCceEEEecC
Q psy3603 107 ----RNCLTLYSSKSGLIEKIGE 125 (264)
Q Consensus 107 ----rG~LqL~Igr~G~IekVgE 125 (264)
.|.++|.+.+ |+.++.
T Consensus 93 ~~~~tgeiEl~~~~---i~vL~~ 112 (617)
T 4ah6_A 93 PKMPTGEIEIKVKT---AELLNA 112 (617)
T ss_dssp TTSTTTTEEEEEEE---EEEEEC
T ss_pred ccCCCCcEEEEEeE---EEEeec
Confidence 2678888875 665554
No 90
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=47.04 E-value=3.4 Score=35.17 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=30.4
Q ss_pred EEEEEEEeCCCeEEEEEecCCCC----------------C----CCCCC-----------------EEEEeeeEEEEECC
Q psy3603 66 VRTLKVADSTACINLSLWDEPGA----------------L----LHPGD-----------------IVRLTKCYAQIWRN 108 (264)
Q Consensus 66 V~tL~LADeTGsI~ltLWdd~ad----------------~----Ik~GD-----------------IIrI~ngyVs~frG 108 (264)
++++.|+|.||++.++++|+.++ . +++.| +++|+ ++...|+|
T Consensus 76 il~~~i~D~TG~~wvt~F~e~ae~ilG~~~~~~~~~~A~eL~~~l~e~~~~~~~~~~~~~~~~k~~~frlr-~k~e~ynd 154 (172)
T 3u50_C 76 MLRAFVQDSTGTIPVMIFDQQSSQLINQIDPSIHVQEAGQYVKNCIENGQEEIIRQLFSKLDFARFIFEIQ-FENKEFNN 154 (172)
T ss_dssp CEEEEEEETTEEEEEEECHHHHHHHHHHHCTTSCGGGHHHHHHHHHTTTCHHHHHHHHHTTTTCEEEEEEE-EEECC---
T ss_pred EEEEEEEeCCCCEEEEEEhHHHHHHhCCCCCccchhhHHHHHHHHHhcCcHHHHHHHHHhhcCcEEEEEEE-EEEcccCC
Confidence 37999999999999999985432 1 22322 26776 67888999
Q ss_pred EEEEEEc
Q psy3603 109 CLTLYSS 115 (264)
Q Consensus 109 ~LqL~Ig 115 (264)
+.++...
T Consensus 155 e~Rvr~t 161 (172)
T 3u50_C 155 EQEIAYK 161 (172)
T ss_dssp ---EEEE
T ss_pred EeEEEEE
Confidence 8888655
No 91
>2wkd_A ORF34P2; SSB, single-stranded DNA binding, DNA binding protein; 2.10A {Lactococcus phage P2} PDB: 2wkc_A
Probab=45.51 E-value=47 Score=26.79 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=34.3
Q ss_pred eEEEEEEEecCCcee-ecCC-cEEEEEEE-EeCCCe----EEEEEecCCCCCCCCCCEEEEeeeEEEE
Q psy3603 45 VNVTCIVLDISPRVT-LKEN-REVRTLKV-ADSTAC----INLSLWDEPGALLHPGDIVRLTKCYAQI 105 (264)
Q Consensus 45 Vnv~fiVle~~~~r~-TKdG-g~V~tL~L-ADeTGs----I~ltLWdd~ad~Ik~GDIIrI~ngyVs~ 105 (264)
|..++.|-++.-+.. |..| +++++..+ -|++|+ +-+.+|= .+.++.||+|.|. ++++.
T Consensus 4 It~t~qvNekNTrtV~TaKG~KkviS~p~~~~e~g~~~k~~ygsaf~--pd~v~~GDivTvs-gri~~ 68 (119)
T 2wkd_A 4 ITVTAQANEKNTRTVSTAKGDKKIISVPLFEKEKGSNVKVAYGSAFM--PDFIQMGDTVTVS-GRVQA 68 (119)
T ss_dssp EEEEEECCTTTEEEECCTTSCEEEEEEESSCCC----CCCCEEEEEC--CTTCCTTCEEEEE-EEEEE
T ss_pred EEEEEEeccccceEEeeccCceeEEEEeeeecccCCceeeEEEEEec--cccccCCcEEEEe-ceeee
Confidence 445556666553322 4455 67776655 678883 3566773 3568999999997 45543
No 92
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=45.12 E-value=1.7 Score=40.86 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.2
Q ss_pred ceeeeeeeeeeeeccCCc
Q psy3603 224 FECGVYLDMCLRRRTSHS 241 (264)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~ 241 (264)
=||-+|+||||.+++..+
T Consensus 113 qE~q~y~DmcL~~~~Nfs 130 (333)
T 4etp_B 113 QEYSVYHDMALNQKKNFN 130 (333)
T ss_dssp HTTHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHccCCCee
Confidence 489999999999887654
No 93
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=40.76 E-value=33 Score=29.92 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=24.7
Q ss_pred eEEEEEecCCCCCCCCCCEEEEeeeEEEEEC
Q psy3603 77 CINLSLWDEPGALLHPGDIVRLTKCYAQIWR 107 (264)
Q Consensus 77 sI~ltLWdd~ad~Ik~GDIIrI~ngyVs~fr 107 (264)
+|.+.|-+|..+.++|||.|.|.|-+...+.
T Consensus 212 si~v~l~~dLvd~~~PGDrV~vtGI~~~~~~ 242 (268)
T 2vl6_A 212 QLEIILEDDLVDSARPGDRVKVTGILDIKQD 242 (268)
T ss_dssp EEEEEEEGGGTTSSCTTCEEEEEEEEEEECS
T ss_pred EEEEEEccCccCcccCCCEEEEEEEEEEeec
Confidence 4677777888899999999999976655553
No 94
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase-ISOM; TM0574, struct genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: e.53.1.1
Probab=39.26 E-value=52 Score=31.08 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=29.9
Q ss_pred cCCcEEEEEEEEeC-CCeEEEEEecCCCCCCCCCCEEEEeeeEE
Q psy3603 61 KENREVRTLKVADS-TACINLSLWDEPGALLHPGDIVRLTKCYA 103 (264)
Q Consensus 61 KdGg~V~tL~LADe-TGsI~ltLWdd~ad~Ik~GDIIrI~ngyV 103 (264)
||..+ |.+.|+ ||.|.=..+.+..+.|++||.+.+-+.+|
T Consensus 35 Rd~sR---LLvl~r~~g~i~h~~F~dl~~~L~~GDlLV~NdTrV 75 (347)
T 1vky_A 35 RDASR---LMVLHRKTQRIEHRIFREIIEYLEPGDLLVLNVSKV 75 (347)
T ss_dssp GGGSE---EEEEETTTTEEEEEEGGGGGGGCCTTCEEEEEEEEC
T ss_pred CCcce---EEEEECCCCceeEeeHHhhHhhcCCCCEEEecCceE
Confidence 45443 334465 89998888888889999999999876443
No 95
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=37.55 E-value=1.1e+02 Score=26.91 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=53.6
Q ss_pred EEEEEEecCCcee--ecCC-cEEEEEEEEeCCCeEEEEEecCC-CCCCCCCCEEEEeeeEEEEECCEEEEEEcCCceEEE
Q psy3603 47 VTCIVLDISPRVT--LKEN-REVRTLKVADSTACINLSLWDEP-GALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEK 122 (264)
Q Consensus 47 v~fiVle~~~~r~--TKdG-g~V~tL~LADeTGsI~ltLWdd~-ad~Ik~GDIIrI~ngyVs~frG~LqL~Igr~G~Iek 122 (264)
....||.+.++=+ +..| ..+..++||-+|--.++.+++-. -+.|-+.-+|.|++ |. .++|-|+++-. +.+..
T Consensus 15 ~~VmVLkaTepF~Ye~~E~~~~MFHATVATetqfF~VKVfn~~LKeKF~pk~iI~ISd-Y~-~~~gfLEi~~~--SsVse 90 (208)
T 3rn5_A 15 LPVMVLKAKKPFTFETQEGKQEMFHATVATEKEFFFVKVFNTLLKDKFIPKRIIIIAR-YY-RHSGFLEVNSA--SRVLD 90 (208)
T ss_dssp EEEEEEEECCCEEEEETTEEEEEEEEEEECSSCEEEEEECCGGGGGTCCTTCEEEEES-BE-ECSSCEEECTT--SEEEE
T ss_pred eEEEEEeccCCeeeecccccceEEEEEEeeccceEEEEEecchhhhhcCCCcEEEEEe-cc-cccceEEEecc--cEEEE
Confidence 4566787776643 4455 56899999999999999999954 35699999999996 44 46787777643 34444
Q ss_pred e
Q psy3603 123 I 123 (264)
Q Consensus 123 V 123 (264)
+
T Consensus 91 ~ 91 (208)
T 3rn5_A 91 A 91 (208)
T ss_dssp C
T ss_pred c
Confidence 3
No 96
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=37.33 E-value=39 Score=29.82 Aligned_cols=30 Identities=37% Similarity=0.458 Sum_probs=24.4
Q ss_pred eEEEEEecCCCCCCCCCCEEEEeeeEEEEE
Q psy3603 77 CINLSLWDEPGALLHPGDIVRLTKCYAQIW 106 (264)
Q Consensus 77 sI~ltLWdd~ad~Ik~GDIIrI~ngyVs~f 106 (264)
+|.+.|-+|..+.++|||.|.|.|-+...+
T Consensus 199 si~V~l~~dLvd~~~PGDrV~vtGI~~~~~ 228 (279)
T 1ltl_A 199 QITVVLEDDLVDTLTPGDIVRVTGTLRTVR 228 (279)
T ss_dssp EEEEEEEGGGTTCCCTTCEEEEEEEEEEEE
T ss_pred EEEEEEcccccCccCCCCEEEEEEEEEEee
Confidence 467777788889999999999998765555
No 97
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=33.54 E-value=26 Score=27.73 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=26.6
Q ss_pred eEEEEEecCCCCCCCCCCEEEEeeeEEEEECCEEEEEEcCCceEEEecCce
Q psy3603 77 CINLSLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFC 127 (264)
Q Consensus 77 sI~ltLWdd~ad~Ik~GDIIrI~ngyVs~frG~LqL~Igr~G~IekVgEf~ 127 (264)
+|.+++-|...+.|++||.|.+.+ ..+.+.|.. |.+-..|.
T Consensus 21 tiEiRlnd~k~~~ikvGD~I~f~~-------~~l~~~V~~---v~~Y~sF~ 61 (109)
T 2z0t_A 21 KIEGRLYDEKRRQIKPGDIIIFEG-------GKLKVKVKG---IRVYSSFK 61 (109)
T ss_dssp CEEEEECCTTGGGCCTTCEEEEGG-------GTEEEEEEE---EEEESCHH
T ss_pred EEEEEecchhhhcCCCCCEEEECC-------CEEEEEEEE---EEccCCHH
Confidence 445555555667799999999932 256666665 66666665
No 98
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=32.84 E-value=89 Score=26.06 Aligned_cols=77 Identities=10% Similarity=0.076 Sum_probs=41.7
Q ss_pred cccCcccccccccccccccceEEEEEEEecCCceeecCCcEEEEEEEE-eCC----C-----eEEEEEec-CCCC----C
Q psy3603 25 NRKKEAMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVA-DST----A-----CINLSLWD-EPGA----L 89 (264)
Q Consensus 25 ~~~~~~~~ikIkDLkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LA-DeT----G-----sI~ltLWd-d~ad----~ 89 (264)
+|.-+++..-+.-.+.-- +|-+.++|.+... +.+ .+..+..++|+ |.+ | -+++++|+ ..++ .
T Consensus 28 ~~~~~~~~~~~~h~r~vN-~VvLmGRvtdpq~-ry~-~~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfGg~lAE~i~~y 104 (148)
T 3stb_C 28 APNAPEEGEVAAHWRCVN-HCVMLGVVQNIQE-GFV-FEDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQ 104 (148)
T ss_dssp ----------CCCCSCSE-EEEEEEEEEEEEE-EEE-TTEEEEEEEEEEECSSCCTTSCSEEEEEEEECSHHHHHHHHHH
T ss_pred CCCCccchhhhhhheecc-eEEEEEEecCccc-ccc-CCCcEEEEEEEEecCCCCCCCCccceEEEEEECChHHHHHHHH
Confidence 344333333333344444 4999999986653 233 34567655553 222 2 28899997 3333 3
Q ss_pred CCCCCEEEEeeeEEEE
Q psy3603 90 LHPGDIVRLTKCYAQI 105 (264)
Q Consensus 90 Ik~GDIIrI~ngyVs~ 105 (264)
++.|+.|.|. |+.++
T Consensus 105 lkkG~rVlVe-GRLrm 119 (148)
T 3stb_C 105 LRDGEWFLVT-GRLRM 119 (148)
T ss_dssp CCTTCEEEEE-EEEEE
T ss_pred hcCCCEEEEE-EEEEc
Confidence 8999999999 45544
No 99
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Probab=32.74 E-value=56 Score=30.78 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=29.5
Q ss_pred cCCcEEEEEEEEeC-CC-eEEEEEecCCCCCCCCCCEEEEeeeEE
Q psy3603 61 KENREVRTLKVADS-TA-CINLSLWDEPGALLHPGDIVRLTKCYA 103 (264)
Q Consensus 61 KdGg~V~tL~LADe-TG-sI~ltLWdd~ad~Ik~GDIIrI~ngyV 103 (264)
||..+ |.+.|+ +| .|.=..+.+..+.|++||.+.+-+.+|
T Consensus 24 Rd~sR---LLvl~~~~g~~i~h~~F~dl~~~L~~GDlLV~NdTrV 65 (345)
T 1wdi_A 24 RDMAR---LMVVYREGPFRVAHKRVRDLPEFLRPGDVLVFNESKV 65 (345)
T ss_dssp GGGSE---EEEECSSSSCCEEEEEGGGHHHHCCTTCEEEEEEEEE
T ss_pred CCcce---EEEEECCCCCceeeeeHHhhHhhcCCCCEEEecCceE
Confidence 45443 344565 88 898888888888899999999976444
No 100
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=32.33 E-value=22 Score=28.28 Aligned_cols=42 Identities=12% Similarity=0.103 Sum_probs=28.3
Q ss_pred CCeEEEEEecCCCCCCCCCCEEEEeeeEEEEECCEEEEEEcCCceEEEecCce
Q psy3603 75 TACINLSLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFC 127 (264)
Q Consensus 75 TGsI~ltLWdd~ad~Ik~GDIIrI~ngyVs~frG~LqL~Igr~G~IekVgEf~ 127 (264)
.-+|.+++=|+..+.|++||.|.+.+ ++.+.|.. |.+-..|.
T Consensus 20 ~KtiEiR~nd~~~~~i~vGD~I~f~~--------~l~~~V~~---v~~Y~sF~ 61 (113)
T 1xne_A 20 KKRIEVRVAYPQLKDIKRGDKIIFND--------LIPAEVVE---VKKYETFR 61 (113)
T ss_dssp CCCEEECCCTTTTTTCCTTCEEEETT--------TEEEEEEE---EEECSSHH
T ss_pred CcEEEEEecchhhhccCCCCEEEEcc--------ceEEEEEE---EEecCCHH
Confidence 33455555555677799999999975 56666654 66656665
No 101
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=32.22 E-value=49 Score=26.23 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=43.5
Q ss_pred ccccccccccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCCCCCCCCCEEEEeeeEEEEE
Q psy3603 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIW 106 (264)
Q Consensus 32 ~ikIkDLkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~ad~Ik~GDIIrI~ngyVs~f 106 (264)
.+.-++|.|+++ |. |..+ .+|.++-+..|.-+ |+=...|=+-.+.++++||.|-|- +|+.+-
T Consensus 8 Ll~aA~i~~~E~-V~----I~Nv------nNG~Rf~TYvI~Ge-GSG~I~lNGAAArl~~~GD~vII~-aY~~~~ 69 (102)
T 3plx_B 8 LLQASGILEYEK-VQ----VVNV------NNGARFETYTIATQ-EEGVVCLNGAAARLAEVGDKVIIM-SYADFN 69 (102)
T ss_dssp HHHHHTCCTTCE-EE----EEET------TTCCEEEEECEEES-STTCEEEEGGGGGGCCTTCEEEEE-EEEEEE
T ss_pred HHHHcCCCCCCE-EE----EEEC------CCCcEEEEEEEEcC-CCCEEEeCcHHHhccCCCCEEEEE-EcccCC
Confidence 345567888887 43 2332 36788988888777 654455556666779999999998 787653
No 102
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=30.59 E-value=2e+02 Score=26.05 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=46.3
Q ss_pred ccccccccccc-ceEEEEEEEecCCceeecCCcEEEEEEEEeCCCe-EEEEEecCCCCC-CCCCCEEEEeeeEEEE
Q psy3603 33 VYIKDLHVGIK-NVNVTCIVLDISPRVTLKENREVRTLKVADSTAC-INLSLWDEPGAL-LHPGDIVRLTKCYAQI 105 (264)
Q Consensus 33 ikIkDLkpG~k-nVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGs-I~ltLWdd~ad~-Ik~GDIIrI~ngyVs~ 105 (264)
..+++|.++.+ ..-+.++|+..-.. +...=.++.+.|..|+ +-+++++-..+. +..||.|.|-...++.
T Consensus 356 ~~l~~l~~~~~~~~~~~~kv~~~~~~----~~~~p~~~~~~d~~~~~~~~~~y~~~~~~~~~~gd~~~~~~p~~~~ 427 (474)
T 4abn_A 356 KPLSTLQPGVNSGTVVLGKVVFSLTT----EEKVPFTFGLVDSDGPCYAVMVYNVVQSWGVLIGDSVAIPEPNLRH 427 (474)
T ss_dssp CCGGGCCSEECTTEEEEEEEEEEECC----TTCCSEEEEEESSSSCCEEEEECSBCTTCCCCTTCEEEEESCEEEE
T ss_pred ccHhhcccccCCCeEEEEEEEEEecC----CCCCceEEEEEcCCCCEEEEEEecccCCCceecCceEeecCCcceE
Confidence 46778888753 24455555554221 2222277788999888 578999966664 8899999998777654
No 103
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=30.44 E-value=2e+02 Score=22.65 Aligned_cols=68 Identities=9% Similarity=0.098 Sum_probs=44.0
Q ss_pred EEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCC------CCCCCCCCEEEEeeeEEEEEC-CEEEEEEcC
Q psy3603 48 TCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEP------GALLHPGDIVRLTKCYAQIWR-NCLTLYSSK 116 (264)
Q Consensus 48 ~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~------ad~Ik~GDIIrI~ngyVs~fr-G~LqL~Igr 116 (264)
+.-|+++.... +.++..-+.+.|.|..=.+.+.+-..+ ...|+.|.+|+|..-.+...+ ++--|.|-.
T Consensus 27 vlQVl~~K~i~-~~~~~~RyRl~lSDG~~~~~~~mLatqln~~v~~g~l~~~sIirl~~y~~~~v~~~k~vliIl~ 101 (123)
T 2b29_A 27 ILQVINIRPIT-TGNSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDGRRVVILME 101 (123)
T ss_dssp EEEEEEEEEEC-CTTSCCEEEEEEECSSEEEEEEEECGGGHHHHHTTSSCTTCEEEEEEEEEEECSSSCEEEEEEE
T ss_pred eEEEEeeeecC-CCCCCceEEEEEECcchheeeehhHHHHHHHHhcCCccCCCEEEEEEEEEEEecCCcEEEEEEe
Confidence 56666665332 234445667899999999998454322 245899999999853355555 665555554
No 104
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=29.39 E-value=97 Score=26.08 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=33.9
Q ss_pred eEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCCC---CCCCCCEEEEeee
Q psy3603 45 VNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGA---LLHPGDIVRLTKC 101 (264)
Q Consensus 45 Vnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~ad---~Ik~GDIIrI~ng 101 (264)
|=+-++|++. +++ .++|-|.||.+.+..-++... .+++|.+|-+.|.
T Consensus 61 VWmQG~VV~~-------~~g---~~~LdDgTG~~~v~g~~~vp~g~p~l~~G~YVMV~G~ 110 (150)
T 3mxn_B 61 VWMQGRVVMA-------DRG---EARLRDPSGDFSVRGLERVPRGRPCLVPGKYVMVMGV 110 (150)
T ss_dssp EEEEEEEEEE-------ETT---EEEEEETTEEEEEECGGGSCCCSCCCSTTCEEEEEEE
T ss_pred EEEEeEEEEe-------CCC---eEEEECCCceEEEeeccccCCCCcccCCCCEEEEEEE
Confidence 4456777773 223 378999999988877665533 3899999999975
No 105
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=28.36 E-value=93 Score=25.11 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=44.6
Q ss_pred ccccccccccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCCCCCCCCCEEEEeeeEEEEE
Q psy3603 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIW 106 (264)
Q Consensus 32 ~ikIkDLkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~ad~Ik~GDIIrI~ngyVs~f 106 (264)
.+.-.+|.|+++ |. |..+ .+|.++-+..|.-+-|+=.+.|=+-.+..+++||.|-|- +|+.+-
T Consensus 35 Ll~aA~i~~~E~-V~----I~Nv------nNG~Rf~TYvI~GerGSg~I~lNGAAAr~~~~GD~vII~-ay~~~~ 97 (114)
T 3oug_A 35 IMKQANIIENEK-VQ----VVNL------NNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFII-SYTQVD 97 (114)
T ss_dssp HHHHTTCCTTBE-EE----EEET------TTCCEEEEEEEEECTTSCCEEEEGGGGGGCCTTCEEEEE-EEEEEC
T ss_pred HHHHcCCCcCCE-EE----EEEC------CCCceEEEEEEEccCCCCEEEeCCHHHhccCCCCEEEEE-ECCcCC
Confidence 355677888887 43 2332 367889999998876654455556666779999999998 677654
No 106
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=27.46 E-value=1.3e+02 Score=23.51 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=21.5
Q ss_pred EEEEEEeCCCe---EEEEEecC------------C--CCCCCCCCEEEEee
Q psy3603 67 RTLKVADSTAC---INLSLWDE------------P--GALLHPGDIVRLTK 100 (264)
Q Consensus 67 ~tL~LADeTGs---I~ltLWdd------------~--ad~Ik~GDIIrI~n 100 (264)
..+.+.|..|. +++..|+. . ...|++||+|.+.-
T Consensus 52 ~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV~~~~L~~GD~~~F~~ 102 (130)
T 1wid_A 52 VLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSR 102 (130)
T ss_dssp EEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHHTTCCTTCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHHHHcCCCCCCEEEEEE
Confidence 45566676664 34555642 1 13489999999983
No 107
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=26.80 E-value=78 Score=24.80 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=43.4
Q ss_pred cccccccccccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCCCCCCCCCEEEEeeeEEEEE
Q psy3603 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIW 106 (264)
Q Consensus 31 ~~ikIkDLkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~ad~Ik~GDIIrI~ngyVs~f 106 (264)
..+.-.+|.|+++ |. |..+ .+|.++-+..|.-+-|+=...|=+-.+.++++||.|-|- +|+.+-
T Consensus 7 dLl~aa~i~~~E~-V~----IvNv------nNG~Rf~TYvI~GerGSG~I~lNGAAArl~~~GD~vII~-aY~~~~ 70 (96)
T 1vc3_B 7 DLLDAAGILPFEQ-VD----IYDI------TNGARLTTYALPGERGSGVIGINGAAAHLVKPGDLVILV-AYGVFD 70 (96)
T ss_dssp HHHHHHTCCTTCE-EE----EEET------TTCCEEEEECEEECTTTTCEEEEGGGGGTCCTTCEEEEE-EEEEEC
T ss_pred HHHHHcCCCCCCE-EE----EEEC------CCCceEEEEEEEccCCCCeEEEchHHHccCCCCCEEEEE-ECccCC
Confidence 3345567888887 43 2332 367889888888775553444456556679999999998 787653
No 108
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=24.51 E-value=2e+02 Score=29.76 Aligned_cols=55 Identities=9% Similarity=0.146 Sum_probs=39.2
Q ss_pred cceEEEEEEEecCCceeecCCcEEEEEEEEeCCCe-EEEEEecCCCCCCCCCCEEEEeeeE
Q psy3603 43 KNVNVTCIVLDISPRVTLKENREVRTLKVADSTAC-INLSLWDEPGALLHPGDIVRLTKCY 102 (264)
Q Consensus 43 knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGs-I~ltLWdd~ad~Ik~GDIIrI~ngy 102 (264)
..|+++++|+.+.... | ..=.+-|+|+... +-+..|....+-|++|.+|-+.|-.
T Consensus 612 ~EvDivG~Vv~v~~~~----~-~~~~vylsD~~~nll~Ikf~~~l~eD~~~~~~va~sNL~ 667 (738)
T 1miu_A 612 SEVDVVGVVVSVVKPI----G-LAPLVYLSDECLNLLVVKFGIDLNEDIKPRVLIAASNLQ 667 (738)
T ss_dssp TEEEEEEEEEEEECCT----T-SCCEEEEECSSSCEEEEEESSCCCSCCCSSCEEEEEEEE
T ss_pred CceeEEEEEEEEcccC----c-ccceEEEEcCCCcEEEEEEecCchhhCccccEEEEeeeE
Confidence 4599999999996441 1 1113446899855 5677898654339999999999853
No 109
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=23.76 E-value=1.1e+02 Score=25.54 Aligned_cols=62 Identities=11% Similarity=0.192 Sum_probs=42.7
Q ss_pred cccccccccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCCCCCCCCCEEEEeeeEEEEE
Q psy3603 33 VYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIW 106 (264)
Q Consensus 33 ikIkDLkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~ad~Ik~GDIIrI~ngyVs~f 106 (264)
+.-++|.|+++ |. |..+ .+|.++-+..|.-+-|+=.+.|=+-.+-.+++||.|-|- +|+.+-
T Consensus 50 ldaAgIl~~Ek-V~----IvNv------nNG~RfeTYvI~GerGSG~I~lNGAAArl~~~GD~VII~-sYa~~~ 111 (143)
T 1pqh_A 50 LDAAGILENEA-ID----IWNV------TNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIA-SFVTMP 111 (143)
T ss_dssp HHHHTCCTTCE-EE----EEET------TTCCEEEEEEEEECTTCCCEECCGGGGGTCCTTCEEEEE-EEEEEE
T ss_pred HHHcCCCCCCE-EE----EEEC------CCCceEEEEEEEccCCCceEEechHHHccCCCCCEEEEE-ECccCC
Confidence 44456777776 43 2332 367889999998876664445556556679999999998 787653
No 110
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=23.47 E-value=2.8e+02 Score=22.08 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=41.9
Q ss_pred ccccccccccccceEE---EEEEEecCCceeecCCcEEEEEEEEe-CCCeEEEEEecCCCCCCCCCCEEEE
Q psy3603 32 DVYIKDLHVGIKNVNV---TCIVLDISPRVTLKENREVRTLKVAD-STACINLSLWDEPGALLHPGDIVRL 98 (264)
Q Consensus 32 ~ikIkDLkpG~knVnv---~fiVle~~~~r~TKdGg~V~tL~LAD-eTGsI~ltLWdd~ad~Ik~GDIIrI 98 (264)
.+...||+.|+. |.+ .++|++....+..|.|+.+..+.+-| .||.+.=..+ +.||.+..
T Consensus 10 ~i~~~~lr~G~~-I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf-------~s~~~ve~ 72 (136)
T 2eif_A 10 QVNVGSLKVGQY-VMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVA-------PTSSKVEV 72 (136)
T ss_dssp EEEGGGCCTTSE-EEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEE-------ETTSEEEE
T ss_pred EEEHHHCcCCCE-EEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEe-------cCCCEecc
Confidence 356789999996 877 88899887554445577788888888 6888654333 45666555
No 111
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus}
Probab=22.72 E-value=89 Score=24.61 Aligned_cols=58 Identities=17% Similarity=0.341 Sum_probs=33.6
Q ss_pred eCCCeEEEEEecCCCCCCCCCCEEEEeeeEEEEECCEEEEEEcCCceEEEecCceeeecCCCCCC
Q psy3603 73 DSTACINLSLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMS 137 (264)
Q Consensus 73 DeTGsI~ltLWdd~ad~Ik~GDIIrI~ngyVs~frG~LqL~Igr~G~IekVgEf~~~fnE~pNiS 137 (264)
|..|.|.+ -++..-.|+.||.|+++.. +|.-+|+=..-=+|+.++.+.+...+.-.++
T Consensus 27 ~~~g~Vt~--~~~~~H~l~dGD~V~FseV-----~GM~eLN~~~p~~i~v~~p~tf~I~dts~f~ 84 (112)
T 2v31_A 27 DNPGVVTC--LDEARHGFETGDFVSFSEV-----QGMIQLNGCQPMEIKVLGPYTFSICDTSNFS 84 (112)
T ss_dssp SSSEEEEE--CTTCCCCCCTTCEEEECSE-----ESCCTTGGGCCEEEEECSSSEEEESCCTTSC
T ss_pred CCCcEEEE--ecCCccCCcCCCEEEEEee-----EcchhhCCCcceEEEEcCCCEEEEecccccc
Confidence 56666554 4444444999999999853 4555554332224666677766654433333
No 112
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=20.20 E-value=1.3e+02 Score=25.11 Aligned_cols=64 Identities=25% Similarity=0.356 Sum_probs=44.2
Q ss_pred cccccccccccccceEEEEEEEecCCceeecCCcEEEEEEEEeCCCeEEEEEecCCCCCCCCCCEEEEeeeEEEEE
Q psy3603 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIVRLTKCYAQIW 106 (264)
Q Consensus 31 ~~ikIkDLkpG~knVnv~fiVle~~~~r~TKdGg~V~tL~LADeTGsI~ltLWdd~ad~Ik~GDIIrI~ngyVs~f 106 (264)
..+.-++|.|+++ |. |..+ .+|.++-+..|.-+-|+=.+.|=+-.+-.+++||.|-|- +|+.+-
T Consensus 31 dLldaAgIl~~Ek-V~----IvNv------nNG~RfeTYvI~GerGSG~I~lNGAAArl~~~GD~vII~-aYa~~~ 94 (139)
T 2c45_A 31 DLMDAADLLEGEQ-VT----IVDI------DNGARLVTYAITGERGSGVIGINGAAAHLVHPGDLVILI-AYATMD 94 (139)
T ss_dssp HHHHHTTCCSSCC-EE----EEET------TTCCEEEECEEEECTTTTCEEEESSTTTTSCTTCEEEEE-ECCEEE
T ss_pred HHHHHcCCCCCCE-EE----EEEC------CCCceEEEEEEEccCCCCEEEEchHHHccCCCCCEEEEE-ECCcCC
Confidence 3356677888887 44 2332 367889888888875554444556666779999999998 676553
Done!