RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3603
(264 letters)
>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120)
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 145
Score = 98.9 bits (246), Expect = 1e-26
Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 13/124 (10%)
Query: 27 KKEAMDVYIKDLHVGIKNVNVTCIVLDISPRVT-------------LKENREVRTLKVAD 73
K++ + V ++ L G +T V++ + V + + + D
Sbjct: 11 KRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD 70
Query: 74 STACINLSLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNEN 133
T CI + ++ L+ PG V L +++ + L K G IE G E+
Sbjct: 71 ETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKED 130
Query: 134 LDMS 137
++S
Sbjct: 131 NNLS 134
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon
Sulfolobus solfataricus [TaxId: 2287]}
Length = 115
Score = 93.4 bits (232), Expect = 7e-25
Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 31 MDVYIKDLHVGIKNVNVTCIVLDISPRVTLK---ENREVRTLKVADSTACINLSLWDEPG 87
M+ + +L +++VNVT VL+ S ++ R + V D T + L+LW +
Sbjct: 1 MEEKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA 60
Query: 88 ALLHPGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIP 139
+ G +V++ + ++ + L + I + E + + + P
Sbjct: 61 GSIKEGQVVKIENAWTTAFKGQVQLNAGSKTKIAEASEDGFPESSQIPENTP 112
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 140
Score = 39.4 bits (92), Expect = 8e-05
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 35 IKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVAD-STACINLSLWDEPGALLHP- 92
+ L G VNV +V P K + + D + + L+ L
Sbjct: 9 LNQLKGG-TIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPII 67
Query: 93 ---GDIVRLTKCYAQIWRNCLTLYSSKS 117
GDIVR + Q+++ +S
Sbjct: 68 YKNGDIVRFHRLKIQVYKKETQGITSSG 95
>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor
NKp46 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 27.3 bits (60), Expect = 0.71
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 81 SLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLY 113
+L PG + G+ V C + L
Sbjct: 6 TLSVHPGPEVISGEKVTF-YCRLDTATSMFLLL 37
>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 26.6 bits (58), Expect = 1.3
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 81 SLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLY 113
+L +P +++ G V L +C +Q+ + L
Sbjct: 6 TLSAQPSPVVNSGGNVTL-QCDSQVAFDGFILC 37
>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human
(Homo sapiens), p58-cl42 kir [TaxId: 9606]}
Length = 96
Score = 26.1 bits (57), Expect = 1.7
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 81 SLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLY 113
SL PG L+ + V L +C++ + L+
Sbjct: 4 SLLAHPGPLVKSEETVIL-QCWSDVMFEHFLLH 35
>d1pcaa1 d.58.3.1 (A:4A-99A) Procarboxypeptidase A {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 94
Score = 25.9 bits (57), Expect = 2.1
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 57 RVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIV 96
R+++ + +V+ +K + + L W P P D+
Sbjct: 11 RISVDDEAQVQKVKELEDLEHLQLDFWRGPARPGFPIDVR 50
>d1wioa4 b.1.1.3 (A:292-363) CD4 C2-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 72
Score = 25.2 bits (55), Expect = 2.5
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 46 NVTCIVLD-ISPRVTLKENREVRTLKVAD 73
N+TC V SP++ L E + KV+
Sbjct: 9 NLTCEVWGPTSPKLMLSLKLENKEAKVSK 37
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha
subunit {Oxytricha nova [TaxId: 200597]}
Length = 169
Score = 26.1 bits (57), Expect = 3.1
Identities = 14/132 (10%), Positives = 39/132 (29%), Gaps = 27/132 (20%)
Query: 43 KNVNVTCIVLDISPRVTLKENREVRTLKVAD-STACINLSLWDEPGALLH---------- 91
+ + +V+D + + R + +LK+ D + +
Sbjct: 15 QPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFED 74
Query: 92 ------PGDIVRLTKCYAQIWRNCLTLYSSKSGLIEKIGEFCMVFNENLDMSIPIPNLPV 145
GDI+R+ + +++ ++ + +F+ +
Sbjct: 75 LPIIHRAGDIIRVHRATLRLYNGQRQFNANVF----YSSSWA-LFS-----TDKRSVTQE 124
Query: 146 NAPQSANGNSNP 157
Q A ++ P
Sbjct: 125 INNQDAVSDTTP 136
>d2boaa2 d.58.3.1 (A:4-99) Procarboxypeptidase A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 94
Score = 25.1 bits (55), Expect = 3.5
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 57 RVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIV 96
R+ ++ E+ L ++ + L+ W P + P D++
Sbjct: 11 RINVRNGDEISKLSQLVNSNNLKLNFWKSPSSFNRPVDVL 50
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp.
c2-2 [TaxId: 192168]}
Length = 216
Score = 26.3 bits (57), Expect = 3.6
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 30 AMDVYIKDLHVGIKNVNVTCIVLDISPRVTLKENR-EVRTLKVADST 75
V++ +G+ + + D+S + N VR + + ++
Sbjct: 146 RYKVWVNGQEIGVGSGSRLAQEFDVSDALRAGSNLLVVRVHQWSAAS 192
>d1cida2 b.1.1.3 (A:106-177) CD4 C2-set domains {Rat (Rattus
rattus) [TaxId: 10117]}
Length = 72
Score = 24.9 bits (54), Expect = 3.6
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 46 NVTCIVLD-ISPRVTLKENREVRTLKVAD 73
+TC V+ SP++ L +E + +V+
Sbjct: 11 TLTCEVMGPTSPKMRLILKQENQEARVSR 39
>d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus
thermophilus [TaxId: 274]}
Length = 70
Score = 24.7 bits (54), Expect = 3.7
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 235 RRRTSHSHWF-----RLTAEKHSGEIRPGTVR 261
+ H + + HSGE+ GT +
Sbjct: 23 MAKGGHRLYTHPDGRIVVVPFHSGELPKGTFK 54
>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 25.4 bits (55), Expect = 3.8
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 81 SLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLY 113
L + G +L PG+ + LT A I + +L
Sbjct: 7 FLSADRGLVLMPGENISLTCSSAHIPFDRFSLA 39
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 26.4 bits (58), Expect = 4.5
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 143 LPVNAPQSA-NGNSNPGNMNNSGNNKG--NMRPNP 174
+PVNAP+ + G M GN+ PN
Sbjct: 349 IPVNAPKCPFHNYHRDGAMRVDGNSGNGITYEPNS 383
>d2q7sa1 c.56.5.9 (A:10-289) N-formylglutamate amidohydrolase
{Ralstonia eutropha [TaxId: 106590]}
Length = 280
Score = 26.0 bits (56), Expect = 5.0
Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
Query: 32 DVYIKDLHVGIKNVNVTCIVLDISPRVTLKENREVRTLKVADSTACINLSLWDEPGALLH 91
D ++ L + V T + PRV + NR + + A L L
Sbjct: 45 DTHVDALWEAVPRVGGTLLAATF-PRVYIDPNRMLDDIDPAQLEGPWPTPLAPGEKTRLG 103
Query: 92 PGDIVRLTKCYAQIWRNCLT 111
G I I+ LT
Sbjct: 104 YGLIWSNVDAATPIYDRKLT 123
>d1ow1a_ b.131.1.3 (A:) SMART/HDAC1 associated repressor protein,
SHARP {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 25.1 bits (55), Expect = 6.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 92 PGDIVRLTKCYAQIWRNCLTLYSSK 116
P D+V+L K Y +W+ L L +
Sbjct: 1 PVDMVQLLKKYPIVWQGLLALKNDT 25
>d1ayea2 d.58.3.1 (A:4A-99A) Procarboxypeptidase A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 94
Score = 24.4 bits (53), Expect = 7.6
Identities = 4/40 (10%), Positives = 12/40 (30%)
Query: 57 RVTLKENREVRTLKVADSTACINLSLWDEPGALLHPGDIV 96
+ +++ L ++ + L W P +
Sbjct: 11 EIVPSNEEQIKNLLQLEAQEHLQLDFWKSPTTPGETAHVR 50
>d1r4xa1 b.1.10.3 (A:600-762) Coatomer gamma subunit C-terminal
domain, first subdomain {Human (Homo sapiens) [TaxId:
9606]}
Length = 163
Score = 24.7 bits (54), Expect = 8.1
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 132 ENLDMSIPIPNLPVNAPQSA 151
+ +P +LP N P +
Sbjct: 88 YEVLCYVPARSLPYNQPGTC 107
>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 24.1 bits (52), Expect = 8.6
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 81 SLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLY 113
+LW EPG+++ G V L +C LY
Sbjct: 6 TLWAEPGSVITQGSPVTL-RCQGGQETQEYRLY 37
>d2phcb1 b.62.1.4 (B:86-217) Uncharacterized protein PH0987
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 24.5 bits (53), Expect = 9.1
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 75 TACINLSLWD---EPGALLHPGDIVR 97
I L ++ P +++ PGD V+
Sbjct: 97 IGRIPLRTFNPGKVPPSIVLPGDYVK 122
>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human
(Homo sapiens), p58-cl42 kir [TaxId: 9606]}
Length = 99
Score = 24.3 bits (52), Expect = 9.7
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 81 SLWDEPGALLHPGDIVRLTKCYAQIWRNCLTLY 113
SL +PG + G+ V L C ++ + L
Sbjct: 8 SLSAQPGPTVLAGENVTL-SCSSRSSYDMYHLS 39
>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 170
Score = 24.9 bits (54), Expect = 9.7
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 45 VNVTCIVLDIS-PRVTLKENRE-VRTLKVADST-----ACINLSLWDEPGALL----HPG 93
VN+ IV D + R +L ++ V T+ + D T + + L+ + G L G
Sbjct: 39 VNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVG 98
Query: 94 DIVRLTKCYAQIWRNCLTLYSSK 116
+ L + + +R+ S
Sbjct: 99 QPLLLHQITLRSYRDRTQGLSKD 121
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.416
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,016,329
Number of extensions: 45698
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 27
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)