BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3604
(496 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|340724310|ref|XP_003400525.1| PREDICTED: tRNA pseudouridine synthase 3-like [Bombus terrestris]
Length = 424
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 111/173 (64%), Gaps = 16/173 (9%)
Query: 194 TPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
+ V+++ +RSKL + ++ELPY K+LN LP +I+ +AW P +SARF+C FR
Sbjct: 133 SQVISIDLRSKLNPEDQCKLEDELPYCKILNRLLPSNIRCIAWCPASSNFSARFNCKFRT 192
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT---SAWQ 310
YKY+FP+ L+ID+M KA +Y +G HDFRN+CKM+V NGV N++R V A V ++
Sbjct: 193 YKYFFPRGNLNIDSMDKAVKYTIGEHDFRNICKMDVANGVTNYQRKVIDAKVCLYRRDFR 252
Query: 311 NVQFNDIKEVVDSEPS-------------FKKGQGNEKPEIIQQLVDIEKYPR 350
N+ D+ +++ + + F GQGNEKPEII +L+DIEKYPR
Sbjct: 253 NISGYDVCQLIITSQAFLWHQIRCLMGVLFLIGQGNEKPEIILELLDIEKYPR 305
>gi|322786132|gb|EFZ12740.1| hypothetical protein SINV_14818 [Solenopsis invicta]
Length = 444
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 109/174 (62%), Gaps = 17/174 (9%)
Query: 194 TPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
+ V++L IRSKL + + NELPY KMLN LP +I+ VAW PV +SARFDC +R
Sbjct: 154 SQVISLDIRSKLAPEDQGNLSNELPYCKMLNRLLPTNIRCVAWCPVASNFSARFDCKYRR 213
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT----SAW 309
YKY+FP+ LDIDAM+KAA+Y+VG HDFRN+CKM+V NG++NFKR V A V+ +
Sbjct: 214 YKYFFPRGNLDIDAMNKAAKYVVGDHDFRNICKMDVANGIINFKRTVIDAKVSFVNEQSM 273
Query: 310 QNVQFNDIKEVVDSEPSF-------------KKGQGNEKPEIIQQLVDIEKYPR 350
+ D+ E+ + +F GQ E+PE+I +L+D E P+
Sbjct: 274 EKSTGYDMCELEITSQAFLWHQIRCLMGILLLVGQRKEEPEVILKLLDTETCPQ 327
>gi|383863340|ref|XP_003707139.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Megachile
rotundata]
Length = 420
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 108/173 (62%), Gaps = 16/173 (9%)
Query: 194 TPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
+ V++L IRSKL + ++ELPY K+LN LP +I+ AW PV + SARFDC FR
Sbjct: 134 SQVISLDIRSKLKPEDQNKLEDELPYCKILNRLLPSNIRCTAWCPVSDDVSARFDCKFRT 193
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQN-- 311
YKY+FP+ L+IDAM KA +Y++G HDFRN+CKM+V NGVVN+ R + A V+ QN
Sbjct: 194 YKYFFPRGNLNIDAMDKAVKYIIGEHDFRNICKMDVANGVVNYMRTIMSAEVSLYRQNSK 253
Query: 312 -VQFNDIKEVVDSEPSF-------------KKGQGNEKPEIIQQLVDIEKYPR 350
+ DI +++ + +F GQ EKPE+I +L+DI K PR
Sbjct: 254 HISGYDICQLIITSQAFLWHQIRCLMGVLLLVGQEKEKPEVILELLDISKCPR 306
>gi|350420811|ref|XP_003492633.1| PREDICTED: tRNA pseudouridine synthase 3-like [Bombus impatiens]
Length = 424
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 16/173 (9%)
Query: 194 TPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
+ V+++ +RSKL + ++ELPY K+LN LP +I+ +AW P +SARF+C FR
Sbjct: 133 SQVISIDLRSKLNPEDQCKLEDELPYCKILNRLLPSNIRCIAWCPASSNFSARFNCKFRT 192
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT---SAWQ 310
YKY+FP+ L+ID+M KA +Y +G HDFRN+CKM+V NGV N++R V A V ++
Sbjct: 193 YKYFFPRGNLNIDSMDKAVKYTIGEHDFRNICKMDVANGVTNYQRKVIDAKVCLYRRDFR 252
Query: 311 NVQFNDIKEVVDSEPS-------------FKKGQGNEKPEIIQQLVDIEKYPR 350
N+ D+ +++ + + F GQGNEKPEII +L+DIEK PR
Sbjct: 253 NISGYDVCQLIITSQAFLWHQIRCLMGVLFLIGQGNEKPEIILELLDIEKCPR 305
>gi|332024452|gb|EGI64650.1| tRNA pseudouridine synthase 3 [Acromyrmex echinatior]
Length = 443
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 114/174 (65%), Gaps = 17/174 (9%)
Query: 194 TPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
+ V++L +RS+L +++ +ELPY K+LN LP +I+ +AW PV +SARFDC FR+
Sbjct: 136 SQVISLDVRSRLEPENQDNLSDELPYCKILNRLLPANIRCIAWCPVSSIFSARFDCKFRS 195
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW-QNV 312
Y+Y+FP+ LDI+AM KAA+Y++G HDFRN+CKM+V NGV+NFKR V A V S QNV
Sbjct: 196 YRYFFPRGNLDIEAMDKAAKYVIGDHDFRNICKMDVANGVINFKRTVMDARVNSLNDQNV 255
Query: 313 QFN---DIKEVVDSEPSF-------------KKGQGNEKPEIIQQLVDIEKYPR 350
+ + D+ E+ + +F GQ E+PEII +L+DIE P+
Sbjct: 256 EKSTGYDMCELEITSQAFLWHQIRCLMGILLLIGQRKEEPEIILKLLDIETCPQ 309
>gi|328777716|ref|XP_393954.4| PREDICTED: tRNA pseudouridine synthase 3-like [Apis mellifera]
Length = 400
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 112/173 (64%), Gaps = 16/173 (9%)
Query: 194 TPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
+ V++L IRSKL + ++ELPY K+LN LP +I+ +AW PVP +SARF+C FR
Sbjct: 117 SQVISLDIRSKLNPEDQYKLEDELPYCKILNRLLPSNIRCIAWCPVPNDFSARFNCKFRT 176
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV---TSAWQ 310
YKY+FP+ L+IDAM+KA +Y++G HDFRN+CKM+V NGV+N+ R V +A V ++
Sbjct: 177 YKYFFPRGNLNIDAMNKAVKYIIGEHDFRNICKMDVANGVINYIRKVINAEVRMYRQDFR 236
Query: 311 NVQFNDIKEVVDSEPS-------------FKKGQGNEKPEIIQQLVDIEKYPR 350
N+ D+ +++ + + F G+G E+ EI+ +L+DIE P+
Sbjct: 237 NISGYDMYQLIITSQAFLWHQIRCLMGVLFLIGEGKEEAEIMLELLDIENCPK 289
>gi|380027544|ref|XP_003697482.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Apis florea]
Length = 400
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 110/173 (63%), Gaps = 16/173 (9%)
Query: 194 TPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
+ V++L IRSKL + ++ELPY KMLN LP +I+ +AW PVP +SARF+C FR
Sbjct: 134 SQVISLDIRSKLNPEDQYKLEDELPYCKMLNRLLPSNIRCIAWCPVPNDFSARFNCKFRT 193
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT---SAWQ 310
YKY+FP+ L+IDAM KA +Y++G HDFRN+CKM+V NGV N+ R V +A V ++
Sbjct: 194 YKYFFPRGNLNIDAMDKAVKYIIGEHDFRNICKMDVANGVTNYIRKVINAEVCMYRQDFR 253
Query: 311 NVQFNDIKEVVDSEPS-------------FKKGQGNEKPEIIQQLVDIEKYPR 350
N+ D+ +++ + + F G+G E+ EI+ +L+DIE P+
Sbjct: 254 NISGYDMCQLIITSQAFLWHQIRCLMGVLFLIGEGKEEAEIMLKLLDIENCPK 306
>gi|307177137|gb|EFN66370.1| tRNA pseudouridine synthase 3 [Camponotus floridanus]
Length = 345
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 109/173 (63%), Gaps = 16/173 (9%)
Query: 194 TPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
+ V++L IRS+L + + ELPY K+LN LP +I+ +AW PV +SARFDC +R
Sbjct: 79 SQVISLDIRSRLEPENQHNLSEELPYCKILNRLLPTNIRCIAWCPVSPNFSARFDCKYRT 138
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ 313
YKY+FP++ LDIDAM K+ +Y +G HDFRN+CKM+V NGV+NFKR V A V+ + QNV+
Sbjct: 139 YKYFFPKSNLDIDAMDKSVKYAIGDHDFRNICKMDVANGVINFKRTVIDAKVSMSNQNVE 198
Query: 314 ----FNDIKEVVDSEPSFKK------------GQGNEKPEIIQQLVDIEKYPR 350
+N + + S+ GQ E+PEII +L++IE P+
Sbjct: 199 KITGYNMCELEITSQAFLWHQIRCLMGILLLVGQRKEEPEIILKLLNIETCPQ 251
>gi|193666867|ref|XP_001946781.1| PREDICTED: tRNA pseudouridine synthase 3-like isoform 1
[Acyrthosiphon pisum]
gi|328702018|ref|XP_003241780.1| PREDICTED: tRNA pseudouridine synthase 3-like isoform 2
[Acyrthosiphon pisum]
Length = 402
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 132/245 (53%), Gaps = 37/245 (15%)
Query: 194 TPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
+ V++L +RS G++S+ ELPY KMLN LP+DI+VVAW PV + +SARFDC R
Sbjct: 119 SQVISLTVRSN----GDDSE--ELPYCKMLNRLLPKDIRVVAWGPVKDDFSARFDCGSRT 172
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ 313
YKYWFP+ LD+D M++A Q +VGTHDFRNLCKM+V NGVV F R +T A + +N Q
Sbjct: 173 YKYWFPRGDLDVDLMNQAIQQVVGTHDFRNLCKMDVANGVVQFYRRITSADIKICSENNQ 232
Query: 314 FN-----DIKEVVDSEPSF-------------KKGQGNEKPEIIQQLVDIEKYPRIKSAQ 355
F+ D+ E+ +F G E P I + L++IE PR
Sbjct: 233 FSKNRDYDMCELTIVGKAFLWHQIRCIVSVLILVGCRKENPNIFKDLLNIENCPRK---- 288
Query: 356 FPWSSTGATTPNELFRRVFLLSFLAWVDQYRIRQTAHCNIFTNLCTFYVPTYLPS--LGE 413
P + P LF F + WV I + + T+L + + + LGE
Sbjct: 289 -PQYCLASDLPLNLFDCQF--ENVNWV----IEDESISEVITSLQCSWATHMIKATMLGE 341
Query: 414 MIKDT 418
M+K+T
Sbjct: 342 MLKNT 346
>gi|307212020|gb|EFN87913.1| tRNA pseudouridine synthase 3 [Harpegnathos saltator]
Length = 368
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 105/171 (61%), Gaps = 16/171 (9%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
V++L IRSKL + + ELPY K+LN LP +I+ +AW P+ +SARFDC +R YK
Sbjct: 81 VISLDIRSKLEPEQQSNLSKELPYCKILNKLLPTNIRCIAWCPISSDFSARFDCKYRKYK 140
Query: 256 YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFN 315
Y+FP+ LDIDAM KA +Y++G DFRN+CKM+V NGV NFKR V A ++ Q V +
Sbjct: 141 YFFPRGNLDIDAMDKAVKYVIGEFDFRNICKMDVANGVTNFKRKVIDAKISMNNQAVDKS 200
Query: 316 ---DIKEVVDSEPSF-------------KKGQGNEKPEIIQQLVDIEKYPR 350
DI E+ + +F G+ E+PEII +L+DIE P+
Sbjct: 201 TGYDICELEITSQAFLWHQIRCLMGILLLVGKKREEPEIISKLLDIETCPQ 251
>gi|156537085|ref|XP_001602396.1| PREDICTED: tRNA pseudouridine synthase 3-like [Nasonia vitripennis]
Length = 421
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 114/194 (58%), Gaps = 22/194 (11%)
Query: 194 TPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
+ V++L IRS+L +++ +EL Y KMLN LP++I+ +WSP + SARFDC FR+
Sbjct: 133 SQVISLDIRSRLEPEKQDNLSDELHYCKMLNRLLPKNIRCFSWSPAHPEMSARFDCKFRS 192
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW---- 309
YKY+FP+ L+I+AM KAA+ VG+HDFRNLCKM+V NGVVNF R + +A VT
Sbjct: 193 YKYFFPRGNLNIEAMDKAAKLTVGSHDFRNLCKMDVANGVVNFFRNIVNAQVTCIKREDP 252
Query: 310 QNVQFNDIKEVVDSEPSF-------------KKGQGNEKPEIIQQLVDIEKYPRIKSAQF 356
+ + D+ E+ +F G+ EKPE+I L+D+EK PR
Sbjct: 253 EKISGYDMCELSIKSNAFLWHQIRCIMGILLLVGREQEKPEVITDLLDVEKCPRK----- 307
Query: 357 PWSSTGATTPNELF 370
P + G P LF
Sbjct: 308 PQYNLGHYIPLNLF 321
>gi|354481125|ref|XP_003502753.1| PREDICTED: tRNA pseudouridine synthase 3 [Cricetulus griseus]
gi|344255032|gb|EGW11136.1| tRNA pseudouridine synthase 3 [Cricetulus griseus]
Length = 480
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 107/185 (57%), Gaps = 31/185 (16%)
Query: 196 VVTLKIRSKLTSPGEESDDN-----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYS 244
V++L +RS+ G +SDD+ E+ Y +LN LP DI+V+AW+PV +S
Sbjct: 126 VISLDLRSQFPR-GRDSDDSDLKDEADDVAKEIRYTHILNRVLPADIRVLAWAPVEPGFS 184
Query: 245 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
ARF+CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A
Sbjct: 185 ARFNCLERTYRYFFPRADLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQ 244
Query: 305 V------------TSAWQNVQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDI 345
V +Q QF I + F GQG EKPEII +L++I
Sbjct: 245 VQLVTWSLGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNI 304
Query: 346 EKYPR 350
EK P+
Sbjct: 305 EKNPQ 309
>gi|395520653|ref|XP_003764440.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Sarcophilus
harrisii]
Length = 506
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 107/190 (56%), Gaps = 39/190 (20%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+L + D + E+ Y +LN LP DI+V+AW+PV +SA
Sbjct: 157 VISLNLRSQLIGSKKPEDQSLKDSINDTVEEIRYTHILNRVLPPDIRVLAWAPVEPSFSA 216
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP A LDI+AM+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 217 RFSCLERTYRYFFPCADLDIEAMNDAAQKYVGTHDFRNLCKMDVANGVINFQRTILSANV 276
Query: 306 TSAWQNVQFNDIKEVVDSEPSFKK-------------------------GQGNEKPEIIQ 340
Q V D++E + + F+ GQ EKPEII
Sbjct: 277 ----QLVALRDLEEKLQQQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQRMEKPEIID 332
Query: 341 QLVDIEKYPR 350
+L++IEK P+
Sbjct: 333 ELLNIEKNPQ 342
>gi|148693448|gb|EDL25395.1| pseudouridine synthase 3, isoform CRA_a [Mus musculus]
Length = 361
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 104/184 (56%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ + + D N E+ Y +LN LP DI+V+AW+PV +SA
Sbjct: 8 VISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSFSA 67
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 68 RFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILCAQV 127
Query: 306 ------------TSAWQNVQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
+Q QF I + F GQG EKPEII +L++I+
Sbjct: 128 QLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQ 187
Query: 347 KYPR 350
K P+
Sbjct: 188 KNPQ 191
>gi|170068141|ref|XP_001868750.1| pseudouridylate synthase [Culex quinquefasciatus]
gi|167864259|gb|EDS27642.1| pseudouridylate synthase [Culex quinquefasciatus]
Length = 470
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 106/176 (60%), Gaps = 23/176 (13%)
Query: 196 VVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLF 251
VV+L +RSK + ES NEL Y ++LN LP +I+ VAW P YSARFDC
Sbjct: 138 VVSLDVRSKFPPESQLAPESLQNELNYCQLLNRVLPAEIRCVAWMPTANPNYSARFDCRS 197
Query: 252 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA-------- 303
R Y+Y+FP+ LD+DAM K ++LVG+HDFRNLCKM+VGNGVV F+R V +A
Sbjct: 198 RTYRYFFPRGSLDVDAMRKGCEFLVGSHDFRNLCKMDVGNGVVTFQRNVHYAVIRDSLKD 257
Query: 304 GVTSAWQNVQF---------NDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
G S++ + F + ++ ++ GQG E P +I++L+D+EK PR
Sbjct: 258 GGDSSYDMLYFELRGKAFLWHQVRCIM--AILILVGQGREDPTVIRELLDVEKNPR 311
>gi|26347775|dbj|BAC37536.1| unnamed protein product [Mus musculus]
Length = 481
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 104/184 (56%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ + + D N E+ Y +LN LP DI+V+AW+PV +SA
Sbjct: 128 VISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSFSA 187
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 188 RFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILCAQV 247
Query: 306 ------------TSAWQNVQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
+Q QF I + F GQG EKPEII +L++I+
Sbjct: 248 QLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQ 307
Query: 347 KYPR 350
K P+
Sbjct: 308 KNPQ 311
>gi|227499255|ref|NP_075781.3| tRNA pseudouridine(38/39) synthase [Mus musculus]
gi|52783242|sp|Q9JI38.2|PUS3_MOUSE RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|22137577|gb|AAH29253.1| Pseudouridine synthase 3 [Mus musculus]
gi|148693450|gb|EDL25397.1| pseudouridine synthase 3, isoform CRA_c [Mus musculus]
Length = 481
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 104/184 (56%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ + + D N E+ Y +LN LP DI+V+AW+PV +SA
Sbjct: 128 VISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSFSA 187
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 188 RFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILCAQV 247
Query: 306 ------------TSAWQNVQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
+Q QF I + F GQG EKPEII +L++I+
Sbjct: 248 QLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQ 307
Query: 347 KYPR 350
K P+
Sbjct: 308 KNPQ 311
>gi|12847644|dbj|BAB27651.1| unnamed protein product [Mus musculus]
Length = 316
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 104/184 (56%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ + + D N E+ Y +LN LP DI+V+AW+PV +SA
Sbjct: 128 VISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSFSA 187
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 188 RFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILCAQV 247
Query: 306 ------------TSAWQNVQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
+Q QF I + F GQG EKPEII +L++I+
Sbjct: 248 QLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQ 307
Query: 347 KYPR 350
K P+
Sbjct: 308 KNPQ 311
>gi|148693449|gb|EDL25396.1| pseudouridine synthase 3, isoform CRA_b [Mus musculus]
Length = 322
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 104/184 (56%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ + + D N E+ Y +LN LP DI+V+AW+PV +SA
Sbjct: 134 VISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSFSA 193
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 194 RFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILCAQV 253
Query: 306 ------------TSAWQNVQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
+Q QF I + F GQG EKPEII +L++I+
Sbjct: 254 QLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQ 313
Query: 347 KYPR 350
K P+
Sbjct: 314 KNPQ 317
>gi|410972303|ref|XP_003992599.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Felis catus]
Length = 480
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 102/184 (55%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS D N E+ Y +LN LP DI+V+AW+PV +SA
Sbjct: 126 VISLDLRSHFPKDRASEDCNLKDEVSDAAKEIRYTHILNRVLPPDIRVLAWAPVEPSFSA 185
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI AM+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 186 RFSCLERTYRYFFPRADLDIVAMNDAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQV 245
Query: 306 --------TSAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
WQ QF I + F GQG EKPEII +L++IE
Sbjct: 246 QLVGQSLDKERWQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIE 305
Query: 347 KYPR 350
K P+
Sbjct: 306 KNPQ 309
>gi|57085889|ref|XP_536533.1| PREDICTED: tRNA pseudouridine synthase 3 [Canis lupus familiaris]
Length = 480
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 101/184 (54%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS D N E+ Y +LN LP DI+V+AW+PV +SA
Sbjct: 126 VISLDLRSHFPEGSTSEDSNLKNEVNDVAKEIRYTHILNRVLPPDIRVLAWAPVEPSFSA 185
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R V A V
Sbjct: 186 RFSCLERTYRYFFPRADLDIITMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTVLFAQV 245
Query: 306 --------TSAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
WQ QF + + F GQG EKPEII +L++IE
Sbjct: 246 ELVGQSLDKEQWQEPFQLCQFEVVGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIE 305
Query: 347 KYPR 350
K P+
Sbjct: 306 KNPQ 309
>gi|395846476|ref|XP_003795929.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Otolemur garnettii]
Length = 480
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ + D N E+ Y +LN LP DI+++AW+PV +SA
Sbjct: 126 VISLDLRSQFPRDRDSEDFNLKDEASSAAKEIRYTHILNRVLPPDIRILAWAPVEPSFSA 185
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP A LDI+ M+ AAQ VGTHDFRN CKM+V NGV+NF+R + A V
Sbjct: 186 RFSCLERTYRYFFPHADLDIETMNYAAQKYVGTHDFRNFCKMDVANGVINFQRTILSAQV 245
Query: 306 T--------SAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
WQ QF I + F GQG EKPEII +L++IE
Sbjct: 246 QLVGQSLSEERWQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIE 305
Query: 347 KYPR 350
K P+
Sbjct: 306 KNPQ 309
>gi|189236260|ref|XP_974416.2| PREDICTED: similar to pseudouridylate synthase [Tribolium
castaneum]
Length = 275
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 102/168 (60%), Gaps = 19/168 (11%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
V++L +RS G++ + +E+ Y K+LN LP +I+ VAW PV +SARFDC R YK
Sbjct: 114 VISLDLRSN----GDDFE-SEINYCKILNRVLPENIQFVAWCPVESAFSARFDCKNRTYK 168
Query: 256 YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFN 315
Y+FP++ LDIDAM AA YLVGTHDFRN CKM+V NGVV FKR + + S +Q +
Sbjct: 169 YFFPKSNLDIDAMKIAANYLVGTHDFRNFCKMDVNNGVVEFKRNILSVDI-SLFQEDERY 227
Query: 316 DIKEVVDSEPSF-------------KKGQGNEKPEIIQQLVDIEKYPR 350
I+ + +F GQG EKPE++ L+DI + PR
Sbjct: 228 SIQVLTIKGNAFLWHQIRCIVGILILVGQGKEKPEVVLDLLDITRNPR 275
>gi|224083654|ref|XP_002193509.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Taeniopygia guttata]
Length = 462
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 103/179 (57%), Gaps = 24/179 (13%)
Query: 196 VVTLKIRS------KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 249
V++L +RS +L G E EL Y +LN LP DI+V+AW+PV ++SARF C
Sbjct: 130 VISLDLRSSLPEGQQLNGHGGEGQQEELRYTHILNRVLPPDIRVLAWAPVGPEFSARFSC 189
Query: 250 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT--S 307
L R Y+Y+FP A LD+ M AAQ VGTHDFRNLCKM+V NGV+NF+R + A VT S
Sbjct: 190 LSRTYRYFFPCAQLDVALMDTAAQRYVGTHDFRNLCKMDVANGVLNFQRTILRARVTRVS 249
Query: 308 AWQNVQFNDIKEVVDSEPS----------------FKKGQGNEKPEIIQQLVDIEKYPR 350
+ D ++ E + F GQG E P++I +L+++EK PR
Sbjct: 250 GGGEARPRDPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGMESPDVIDELLNVEKNPR 308
>gi|444731902|gb|ELW72237.1| tRNA pseudouridine synthase 3 [Tupaia chinensis]
Length = 479
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 104/183 (56%), Gaps = 29/183 (15%)
Query: 196 VVTLKIRSKLTSPGEESDD---------NELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
V++L +RS+L G S+D E+ Y +LN LP DI+V+AW+PV +SAR
Sbjct: 127 VISLDLRSQLPR-GRGSEDVHVEGTDTAQEIRYTHILNRVLPPDIRVLAWAPVEPGFSAR 185
Query: 247 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT 306
F CL R Y+Y+FP+A LD+++M+ AAQ VGTHDFRN CKM+V NGVVNF+R V A V
Sbjct: 186 FSCLERTYRYFFPRADLDVESMNSAAQKYVGTHDFRNFCKMDVANGVVNFQRTVLSAQVQ 245
Query: 307 SAWQN------------VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIEK 347
Q+ QF + F GQG E+PE+I +L+DIE
Sbjct: 246 RVGQSPGEHTQQAPFQLCQFQVTGQAFLYHQVRCMMAVLFLIGQGLERPEVIDELLDIES 305
Query: 348 YPR 350
P+
Sbjct: 306 NPQ 308
>gi|157822367|ref|NP_001101604.1| tRNA pseudouridine synthase 3 [Rattus norvegicus]
gi|149027806|gb|EDL83266.1| pseudouridylate synthase 3 (predicted) [Rattus norvegicus]
gi|165971639|gb|AAI58694.1| Pseudouridylate synthase 3 [Rattus norvegicus]
Length = 479
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 101/184 (54%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ + D N E+ Y +LN LP DI+V+AW+P +SA
Sbjct: 126 VISLDLRSQFPRSRDSEDSNLKDGADDIAKEIRYAHILNRVLPADIRVLAWAPAEPSFSA 185
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP A LDI M+ AAQ VGTHDFRNLCKM+V NGV NF+R + A V
Sbjct: 186 RFSCLERTYRYFFPCADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSAQV 245
Query: 306 TSAWQN------------VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
+ Q+ QF I + F GQG EKPEII +L++IE
Sbjct: 246 QTVAQSPGEEGRQGPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIE 305
Query: 347 KYPR 350
K P+
Sbjct: 306 KNPQ 309
>gi|345317522|ref|XP_001519338.2| PREDICTED: tRNA pseudouridine synthase 3-like [Ornithorhynchus
anatinus]
Length = 734
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 107/182 (58%), Gaps = 27/182 (14%)
Query: 196 VVTLKIRSKLTSPGEESDDN---------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
V++L +RS+ G+E + + E+ Y +LN LP DI+V+AW+PV +SAR
Sbjct: 125 VISLDLRSQTVRGGQEEEGSKDRMDARTAEIRYTHILNRVLPPDIRVLAWAPVGSGFSAR 184
Query: 247 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT 306
F+CL R Y+Y+FP+A LD++AM +AAQ VGTHDFRNLCKM+V NGV +F+R + A V
Sbjct: 185 FNCLQRTYRYFFPRADLDLEAMDRAAQKYVGTHDFRNLCKMDVANGVTSFQRTILSAQVR 244
Query: 307 SAWQNVQFN--DIKEVVDSEPS----------------FKKGQGNEKPEIIQQLVDIEKY 348
Q+ + + D + E + F GQ E PE+I +L+D+EK
Sbjct: 245 RVDQSEETDRRDPFRLCQFEVTGQAFLYHQVRCMMAILFLVGQRMEGPEVIDELLDVEKN 304
Query: 349 PR 350
PR
Sbjct: 305 PR 306
>gi|363742565|ref|XP_417852.3| PREDICTED: tRNA pseudouridine synthase 3 [Gallus gallus]
Length = 459
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 104/185 (56%), Gaps = 30/185 (16%)
Query: 196 VVTLKIRSKLT-----------SPGEES-DDNELPYLKMLNNNLPRDIKVVAWSPVPEKY 243
V++L +RS L+ S G+ S + EL Y +LN LP DI+V+AW+PV +
Sbjct: 130 VISLDLRSNLSEEKKLNGCTGDSEGKSSKSEEELRYTHILNRVLPPDIRVLAWAPVEPDF 189
Query: 244 SARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA 303
SARF CL R Y+Y+FP A LD+ MH AAQ VGTHDFRNLCKM+V NGV+NF+R + A
Sbjct: 190 SARFSCLKRTYRYFFPCADLDVALMHTAAQRYVGTHDFRNLCKMDVANGVINFQRTILSA 249
Query: 304 GVTSAWQNVQ--FNDIKEVVDSEPS----------------FKKGQGNEKPEIIQQLVDI 345
VT A + D + E + F GQ E PEII +L+D+
Sbjct: 250 QVTWADGGAESGLRDPFRLCQFEVTGQAFLYHQVRCMMAILFLIGQRMEGPEIIDELLDV 309
Query: 346 EKYPR 350
EK PR
Sbjct: 310 EKNPR 314
>gi|9652099|gb|AAF91402.1|AF266505_1 pseudouridine synthase 3 [Mus musculus]
Length = 481
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 104/184 (56%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ + + D N E+ Y +LN LP DI+V+AW+PV +SA
Sbjct: 128 VISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSFSA 187
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV++F+R + A V
Sbjct: 188 RFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVIDFQRTILCAQV 247
Query: 306 ------------TSAWQNVQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
+Q QF I + F GQG EKPEII +L++I+
Sbjct: 248 QLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQ 307
Query: 347 KYPR 350
K P+
Sbjct: 308 KNPQ 311
>gi|270006513|gb|EFA02961.1| hypothetical protein TcasGA2_TC030541 [Tribolium castaneum]
Length = 365
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 97/159 (61%), Gaps = 15/159 (9%)
Query: 205 LTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLD 264
L S G++ + +E+ Y K+LN LP +I+ VAW PV +SARFDC R YKY+FP++ LD
Sbjct: 96 LRSNGDDFE-SEINYCKILNRVLPENIQFVAWCPVESAFSARFDCKNRTYKYFFPKSNLD 154
Query: 265 IDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSE 324
IDAM AA YLVGTHDFRN CKM+V NGVV FKR + + S +Q + I+ +
Sbjct: 155 IDAMKIAANYLVGTHDFRNFCKMDVNNGVVEFKRNILSVDI-SLFQEDERYSIQVLTIKG 213
Query: 325 PSF-------------KKGQGNEKPEIIQQLVDIEKYPR 350
+F GQG EKPE++ L+DI + PR
Sbjct: 214 NAFLWHQIRCIVGILILVGQGKEKPEVVLDLLDITRNPR 252
>gi|355714592|gb|AES05053.1| pseudouridylate synthase 3 [Mustela putorius furo]
Length = 479
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 103/185 (55%), Gaps = 31/185 (16%)
Query: 196 VVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVPEKYS 244
V++L +RS G S+D E+ Y +LN LP DI+V+AW+PV +S
Sbjct: 126 VISLDLRSHFLK-GRASEDCNVKDDVYDAAKEIRYTHILNRVLPPDIRVLAWAPVEPSFS 184
Query: 245 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
ARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A
Sbjct: 185 ARFSCLERTYRYFFPRADLDILTMNHAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQ 244
Query: 305 VT--------SAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDI 345
V WQ QF I + F GQG EKPEII +L+++
Sbjct: 245 VQLVGQTLDEETWQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNV 304
Query: 346 EKYPR 350
EK P+
Sbjct: 305 EKNPQ 309
>gi|350588615|ref|XP_003482688.1| PREDICTED: tRNA pseudouridine synthase 3-like [Sus scrofa]
Length = 479
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 101/184 (54%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS + D N E+ Y +LN LP DI+V+AW+PV +SA
Sbjct: 126 VISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDIRVLAWAPVEPSFSA 185
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP A LDI M+ AAQ VGTHDFRNLCKM+V NGV NF+R + A V
Sbjct: 186 RFSCLERTYRYFFPHADLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSAQV 245
Query: 306 ------------TSAWQNVQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
A+Q QF + + F GQG EKPE+I +L++IE
Sbjct: 246 QLLSQSLEEERWQEAFQLCQFEVVGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIE 305
Query: 347 KYPR 350
K P+
Sbjct: 306 KNPQ 309
>gi|355567201|gb|EHH23580.1| hypothetical protein EGK_07068 [Macaca mulatta]
gi|355752776|gb|EHH56896.1| hypothetical protein EGM_06391 [Macaca fascicularis]
gi|380816966|gb|AFE80357.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
gi|383422019|gb|AFH34223.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
gi|384949702|gb|AFI38456.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
Length = 480
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 104/185 (56%), Gaps = 31/185 (16%)
Query: 196 VVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVPEKYS 244
V++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV +S
Sbjct: 126 VISLDLRSQFPR-GRDSEDFNVKEEANATAEEIRYTHILNRVLPPDIRILAWAPVEPSFS 184
Query: 245 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
ARF CL R Y+Y+FP+A LDI AM AAQ VGTHDFRNLCKM+V NGV+NF+R + A
Sbjct: 185 ARFSCLERTYRYFFPRADLDIVAMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQ 244
Query: 305 V--------TSAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDI 345
V WQ QF + F GQG EKPEII +L++I
Sbjct: 245 VRLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNI 304
Query: 346 EKYPR 350
EK P+
Sbjct: 305 EKNPQ 309
>gi|109109191|ref|XP_001111887.1| PREDICTED: tRNA pseudouridine synthase 3 [Macaca mulatta]
Length = 480
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 104/185 (56%), Gaps = 31/185 (16%)
Query: 196 VVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVPEKYS 244
V++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV +S
Sbjct: 126 VISLDLRSQFPR-GRDSEDFNVKEEANATAEEIRYTHILNRVLPPDIRILAWAPVEPSFS 184
Query: 245 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
ARF CL R Y+Y+FP+A LDI AM AAQ VGTHDFRNLCKM+V NGV+NF+R + A
Sbjct: 185 ARFSCLERTYRYFFPRADLDIVAMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQ 244
Query: 305 V--------TSAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDI 345
V WQ QF + F GQG EKPEII +L++I
Sbjct: 245 VRLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNI 304
Query: 346 EKYPR 350
EK P+
Sbjct: 305 EKNPQ 309
>gi|402895728|ref|XP_003910970.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Papio anubis]
Length = 481
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 104/185 (56%), Gaps = 31/185 (16%)
Query: 196 VVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVPEKYS 244
V++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV +S
Sbjct: 127 VISLDLRSQFPR-GRDSEDFNVKEEANATAEEIRYTHILNRVLPPDIRILAWAPVEPSFS 185
Query: 245 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
ARF CL R Y+Y+FP+A LDI AM AAQ VGTHDFRNLCKM+V NGV+NF+R + A
Sbjct: 186 ARFSCLERTYRYFFPRADLDIVAMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQ 245
Query: 305 VT--------SAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDI 345
V WQ QF + F GQG EKPEII +L++I
Sbjct: 246 VQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNI 305
Query: 346 EKYPR 350
EK P+
Sbjct: 306 EKNPQ 310
>gi|301782183|ref|XP_002926505.1| PREDICTED: tRNA pseudouridine synthase 3-like [Ailuropoda
melanoleuca]
Length = 480
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 103/185 (55%), Gaps = 31/185 (16%)
Query: 196 VVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVPEKYS 244
V++L +RS G S+D E+ Y +LN LP DI+V+AW+PV +S
Sbjct: 126 VISLDLRSHFLK-GRASEDFHVKDEVSDAAKEIRYTHILNRVLPPDIRVLAWAPVEPSFS 184
Query: 245 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
ARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A
Sbjct: 185 ARFSCLERTYRYFFPRADLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQ 244
Query: 305 V------------TSAWQNVQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDI 345
V A+Q QF + F GQG EKPEII +L++I
Sbjct: 245 VQLVGQSLDKETWQEAFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNI 304
Query: 346 EKYPR 350
EK P+
Sbjct: 305 EKNPQ 309
>gi|281338704|gb|EFB14288.1| hypothetical protein PANDA_016156 [Ailuropoda melanoleuca]
Length = 479
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 103/185 (55%), Gaps = 31/185 (16%)
Query: 196 VVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVPEKYS 244
V++L +RS G S+D E+ Y +LN LP DI+V+AW+PV +S
Sbjct: 126 VISLDLRSHFLK-GRASEDFHVKDEVSDAAKEIRYTHILNRVLPPDIRVLAWAPVEPSFS 184
Query: 245 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
ARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A
Sbjct: 185 ARFSCLERTYRYFFPRADLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQ 244
Query: 305 V------------TSAWQNVQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDI 345
V A+Q QF + F GQG EKPEII +L++I
Sbjct: 245 VQLVGQSLDKETWQEAFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNI 304
Query: 346 EKYPR 350
EK P+
Sbjct: 305 EKNPQ 309
>gi|403262406|ref|XP_003923581.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Saimiri boliviensis
boliviensis]
Length = 477
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 105/183 (57%), Gaps = 30/183 (16%)
Query: 196 VVTLKIRSKLTSPGEESDD--------NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 247
V++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV +SARF
Sbjct: 126 VISLDLRSQFPR-GRDSEDFNVKEEAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSARF 184
Query: 248 DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT- 306
CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 185 SCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQL 244
Query: 307 -------SAWQNVQFNDIKEVVDSEPS------------FKKGQGNEKPEIIQQLVDIEK 347
WQ V F + V + F GQG EKPEII +L++IEK
Sbjct: 245 VGQSPGEERWQ-VPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEK 303
Query: 348 YPR 350
P+
Sbjct: 304 NPQ 306
>gi|149716663|ref|XP_001505142.1| PREDICTED: tRNA pseudouridine synthase 3 [Equus caballus]
Length = 479
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 31/185 (16%)
Query: 196 VVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVPEKYS 244
V++L +RS + G +S+D E+ Y +LN LP DI+V+AW+PV +S
Sbjct: 125 VISLDLRSHFPN-GRDSEDFNLKDEVNDAAKEIRYTHILNRVLPPDIRVLAWAPVEPSFS 183
Query: 245 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
ARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A
Sbjct: 184 ARFSCLERTYRYFFPRADLDIITMNSAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQ 243
Query: 305 VTSAWQNV------------QFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDI 345
V Q++ QF I + F GQG EKPE+I +L++I
Sbjct: 244 VQLVGQSLAEERGQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEVIDELLNI 303
Query: 346 EKYPR 350
+K P+
Sbjct: 304 QKNPQ 308
>gi|157106978|ref|XP_001649570.1| pseudouridylate synthase [Aedes aegypti]
gi|108879706|gb|EAT43931.1| AAEL004663-PA [Aedes aegypti]
Length = 467
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 103/180 (57%), Gaps = 33/180 (18%)
Query: 196 VVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLF 251
VV+L +RSK + ES NE+ Y ++LN LP+DI+ VAW P V YSARFDC
Sbjct: 138 VVSLDVRSKFAPENQLEPESIANEINYCQLLNRVLPQDIRCVAWMPMVNPNYSARFDCRS 197
Query: 252 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA--- 308
R Y+Y+FP+ L+IDAM +A +LVG HDFRNLCKM+VGNGVV F R +++ + +
Sbjct: 198 RTYRYFFPRGSLNIDAMKEACTFLVGAHDFRNLCKMDVGNGVVTFTRRISYVSIEDSQSD 257
Query: 309 -------------------WQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
W V+ I V+ F G+G E+P ++++L+D+ K P
Sbjct: 258 AKESPYDMLYLELRGKAFLWHQVRC--IMAVL-----FLVGEGKEEPSVVKELLDVNKNP 310
>gi|334330487|ref|XP_001371991.2| PREDICTED: tRNA pseudouridine synthase 3-like [Monodelphis
domestica]
Length = 576
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 105/190 (55%), Gaps = 39/190 (20%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+L + D N E+ Y +LN LP DI+V+AW+ V +SA
Sbjct: 131 VISLNLRSQLPRDKDPEDKNLKDTVNDSVEEICYTHILNRVLPPDIRVLAWATVESSFSA 190
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP A LDI+AM+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 191 RFSCLERTYRYFFPCANLDIEAMNDAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAKV 250
Query: 306 TSAWQNVQFNDIKEVVDSEPSFKK-------------------------GQGNEKPEIIQ 340
Q V F +E + + SF+ GQ EK EII
Sbjct: 251 ----QLVAFGSPEEKLQQQESFQLCQFEVIGQAFLYHQVRCMMAILFLIGQRMEKAEIID 306
Query: 341 QLVDIEKYPR 350
+L++IEK P+
Sbjct: 307 ELLNIEKNPQ 316
>gi|296216591|ref|XP_002754614.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Callithrix jacchus]
Length = 477
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 103/182 (56%), Gaps = 28/182 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN-------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 248
V++L +RS+ + D N E+ Y +LN LP DI+++AW+PV +SARF
Sbjct: 126 VISLDLRSQFPRRRDSEDFNVKEEAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSARFS 185
Query: 249 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT-- 306
CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 186 CLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQPV 245
Query: 307 ------SAWQNVQFNDIKEVVDSEPS------------FKKGQGNEKPEIIQQLVDIEKY 348
WQ V F + V + F GQG EKPEII +L++IEK
Sbjct: 246 GQSPDEERWQ-VPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKN 304
Query: 349 PR 350
P+
Sbjct: 305 PQ 306
>gi|296471772|tpg|DAA13887.1| TPA: tRNA pseudouridine synthase 3 [Bos taurus]
Length = 481
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 94/154 (61%), Gaps = 19/154 (12%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E+ Y +LN LP DI+V+AW+PV +SARF CL R Y+Y+FP+A LDI M+ AAQ
Sbjct: 157 EIRYTHILNRVLPPDIRVLAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKY 216
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKE---VVDSEPS------ 326
VGTHDFRNLCKM+V NGV+NF+R + A V QN+ +E + E +
Sbjct: 217 VGTHDFRNLCKMDVANGVINFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLY 276
Query: 327 ----------FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG EKPE+I +L++IEK P+
Sbjct: 277 HQVRCMMAVLFLIGQGMEKPEVIDELLNIEKNPQ 310
>gi|440894412|gb|ELR46876.1| tRNA pseudouridine synthase 3 [Bos grunniens mutus]
Length = 481
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 94/154 (61%), Gaps = 19/154 (12%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E+ Y +LN LP DI+V+AW+PV +SARF CL R Y+Y+FP+A LDI M+ AAQ
Sbjct: 157 EIRYTHILNRVLPPDIRVLAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKY 216
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKE---VVDSEPS------ 326
VGTHDFRNLCKM+V NGV+NF+R + A V QN+ +E + E +
Sbjct: 217 VGTHDFRNLCKMDVANGVINFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLY 276
Query: 327 ----------FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG EKPE+I +L++IEK P+
Sbjct: 277 HQVRCMMAVLFLIGQGMEKPEVIDELLNIEKNPQ 310
>gi|77735971|ref|NP_001029684.1| tRNA pseudouridine(38/39) synthase [Bos taurus]
gi|119391067|sp|Q3SX07.1|PUS3_BOVIN RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|74356305|gb|AAI04570.1| Pseudouridylate synthase 3 [Bos taurus]
Length = 481
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 94/154 (61%), Gaps = 19/154 (12%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E+ Y +LN LP DI+V+AW+PV +SARF CL R Y+Y+FP+A LDI M+ AAQ
Sbjct: 157 EIRYTHILNRVLPPDIRVLAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKY 216
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKE---VVDSEPS------ 326
VGTHDFRNLCKM+V NGV+NF+R + A V QN+ +E + E +
Sbjct: 217 VGTHDFRNLCKMDVANGVINFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLY 276
Query: 327 ----------FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG EKPE+I +L++IEK P+
Sbjct: 277 HQVRCMMAVLFLIGQGMEKPEVIDELLNIEKNPQ 310
>gi|426251725|ref|XP_004019572.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Ovis aries]
Length = 481
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 104/185 (56%), Gaps = 31/185 (16%)
Query: 196 VVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVPEKYS 244
V++L +RS G +S+D E+ Y +LN LP DI+V+AW+PV +S
Sbjct: 127 VISLDLRSHF-PKGRDSEDFNLKDEVNDVATEIRYTHILNRVLPPDIRVLAWAPVETSFS 185
Query: 245 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
ARF CL R Y+Y+FP A LDI M+ AAQ VGTHDFRNLCKM+V NGV NF+R + A
Sbjct: 186 ARFSCLERTYRYFFPCANLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSAQ 245
Query: 305 VTSAWQNVQFNDIKE---VVDSEPS----------------FKKGQGNEKPEIIQQLVDI 345
V QN+ +E + E + F GQG EKPE+I +L++I
Sbjct: 246 VQRVGQNLAEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEVIDELLNI 305
Query: 346 EKYPR 350
EK P+
Sbjct: 306 EKNPQ 310
>gi|317419455|emb|CBN81492.1| tRNA pseudouridine synthase 3 [Dicentrarchus labrax]
Length = 472
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 98/170 (57%), Gaps = 22/170 (12%)
Query: 198 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW 257
+ +RSK + G +ELPY+KMLN LP+DI+++ W+P E +SARFDC R Y+Y+
Sbjct: 156 NVDVRSKNKASG-----SELPYVKMLNRVLPQDIRILDWAPAAEGFSARFDCQSRTYRYY 210
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW-QNVQFND 316
FP+ LD+ M +AA+ GTHDFRNLCKM+VGNGV+ F+R + A V Q+V D
Sbjct: 211 FPRGSLDVALMAEAAKRYEGTHDFRNLCKMDVGNGVLQFERTILSASVKPVQPQHVSSTD 270
Query: 317 IKEVVDSEPS----------------FKKGQGNEKPEIIQQLVDIEKYPR 350
E+ E GQ E PEII QL+D++ PR
Sbjct: 271 QYELFMFEIKGLAFLYHQVRCMMALLLLIGQKLEAPEIINQLMDVQSNPR 320
>gi|417401673|gb|JAA47712.1| Putative pseudouridylate synthase [Desmodus rotundus]
Length = 480
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 102/184 (55%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS + D N E+ Y +LN LP DI+V+AW+PV +SA
Sbjct: 126 VISLDLRSYFPKDRDSEDLNIKDGVGDAAKEIRYTHILNRVLPADIRVLAWAPVEPSFSA 185
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI+AM+ AA VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 186 RFSCLERTYRYFFPRADLDIEAMNCAAHKYVGTHDFRNLCKMDVANGVINFQRTILSAQV 245
Query: 306 T--------SAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
WQ QF + F GQG E+PEII +L+++E
Sbjct: 246 KLVGQSLAEDGWQAPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGMEEPEIIDELLNVE 305
Query: 347 KYPR 350
K P+
Sbjct: 306 KNPQ 309
>gi|357625661|gb|EHJ76033.1| putative pseudouridylate synthase [Danaus plexippus]
Length = 504
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 103/172 (59%), Gaps = 18/172 (10%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEK---YSARFDCLFR 252
++++ +RSKL P +E+ Y K+LN PRDIK VAW P+P+ +SARFDC R
Sbjct: 140 IISISLRSKL-EPSSTDYSSEIQYCKILNRLFPRDIKAVAWMPIPDDRPDFSARFDCKGR 198
Query: 253 NYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNV 312
YKY+FP++ L+I AM +A + L+G+HDFR+LCKM+VGNGV F R V A + + ++
Sbjct: 199 QYKYYFPKSNLNITAMREACRQLIGSHDFRHLCKMDVGNGVTEFTRRVVSADIIALDKDC 258
Query: 313 -QFNDIKEVVDSEPSF-------------KKGQGNEKPEIIQQLVDIEKYPR 350
Q + +V +F GQG+E P II +L+D+E PR
Sbjct: 259 EQTTSMYALVIEGNAFLWHQIRCIMGVLLLVGQGHESPGIIAELLDVEANPR 310
>gi|297690638|ref|XP_002822721.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pongo abelii]
Length = 481
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 104/185 (56%), Gaps = 31/185 (16%)
Query: 196 VVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVPEKYS 244
V++L +RS+ G++S+D E+ Y +LN LP DI+++AW+PV +S
Sbjct: 127 VISLDLRSQFPR-GKDSEDFNVKGEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFS 185
Query: 245 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
ARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R + A
Sbjct: 186 ARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQ 245
Query: 305 VT--------SAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDI 345
V WQ QF + F GQG EKPEII +L++I
Sbjct: 246 VQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNI 305
Query: 346 EKYPR 350
EK P+
Sbjct: 306 EKNPQ 310
>gi|426370989|ref|XP_004052438.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Gorilla gorilla
gorilla]
Length = 481
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 103/185 (55%), Gaps = 31/185 (16%)
Query: 196 VVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVPEKYS 244
V++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV +S
Sbjct: 127 VISLDLRSQFPR-GRDSEDFNVKEEANVAAEEIRYTHILNRVLPPDIRILAWAPVEPSFS 185
Query: 245 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
ARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R + A
Sbjct: 186 ARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQ 245
Query: 305 VT--------SAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDI 345
V WQ QF + F GQG EKPEII +L++I
Sbjct: 246 VQLVRQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNI 305
Query: 346 EKYPR 350
EK P+
Sbjct: 306 EKNPQ 310
>gi|347800645|ref|NP_001231651.1| pseudouridylate synthase 3 [Sus scrofa]
Length = 479
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 100/184 (54%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS + D N E+ Y +LN LP DI+V+AW+PV +SA
Sbjct: 126 VISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDIRVLAWAPVEPSFSA 185
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP A LDI M+ AAQ GTHDFRNLCKM+V NGV NF+R + A V
Sbjct: 186 RFSCLERTYRYFFPHADLDIVTMNYAAQKYDGTHDFRNLCKMDVANGVTNFQRTILSAQV 245
Query: 306 ------------TSAWQNVQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
A+Q QF + + F GQG EKPE+I +L++IE
Sbjct: 246 QLLSQSLEEERWQEAFQLCQFEVVGQAFLYHQVRCMMAVLFPIGQGMEKPEVIDELLNIE 305
Query: 347 KYPR 350
K P+
Sbjct: 306 KNPQ 309
>gi|326933214|ref|XP_003212702.1| PREDICTED: tRNA pseudouridine synthase 3-like [Meleagris gallopavo]
Length = 710
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 102/185 (55%), Gaps = 30/185 (16%)
Query: 196 VVTLKIRSKLT-----------SPGEES-DDNELPYLKMLNNNLPRDIKVVAWSPVPEKY 243
V++L +RS L+ S G+ S + EL Y +LN LP DI+V+AW+PV +
Sbjct: 128 VISLDLRSNLSKEKKLNGCTGDSEGKSSKSEEELRYTHILNRVLPPDIRVLAWAPVEPDF 187
Query: 244 SARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA 303
SARF CL R Y+Y+FP A LD+ M AAQ VGTHDFRNLCKM+V NGV+NF+R + A
Sbjct: 188 SARFSCLKRTYRYFFPCADLDVALMQAAAQRYVGTHDFRNLCKMDVANGVINFQRTILSA 247
Query: 304 GVT-----------SAWQNVQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDI 345
VT ++ QF + F GQ E PEII +L+D+
Sbjct: 248 QVTWVDGGAEGGLRDPFRLCQFEVTGQAFLYHQVRCMMAILFLIGQRMEGPEIIDELLDV 307
Query: 346 EKYPR 350
EK PR
Sbjct: 308 EKNPR 312
>gi|348573933|ref|XP_003472745.1| PREDICTED: tRNA pseudouridine synthase 3-like [Cavia porcellus]
Length = 480
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 104/184 (56%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSK---------LTSPGEESDD-NELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ L E SDD E+ Y +LN LP DI+V+AW+PV +SA
Sbjct: 127 VISLDLRSQFPRGKDSEDLNLKNEVSDDAKEIRYTHILNRVLPPDIRVLAWAPVEPSFSA 186
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 187 RFSCLERTYRYFFPLADLDIVRMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAEV 246
Query: 306 --------TSAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
+WQ QF + F GQG E+P++I +L++IE
Sbjct: 247 RLVGQSLCAESWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGMEEPQVIDELLNIE 306
Query: 347 KYPR 350
K P+
Sbjct: 307 KNPQ 310
>gi|332208632|ref|XP_003253411.1| PREDICTED: tRNA pseudouridine(38/39) synthase isoform 1 [Nomascus
leucogenys]
Length = 481
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 101/184 (54%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ E D N E+ Y +LN LP DI+++AW+PV +SA
Sbjct: 127 VISLDLRSQFPRGRESEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSA 186
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGVVNF+R + A V
Sbjct: 187 RFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVVNFQRTILSAQV 246
Query: 306 T--------SAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
WQ QF + F GQG EKPE+I +L++IE
Sbjct: 247 QLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPELIDELLNIE 306
Query: 347 KYPR 350
K P+
Sbjct: 307 KNPQ 310
>gi|348508841|ref|XP_003441961.1| PREDICTED: tRNA pseudouridine synthase 3-like [Oreochromis
niloticus]
Length = 467
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 100/171 (58%), Gaps = 17/171 (9%)
Query: 197 VTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY 256
+TL +++ S +ELPY+KMLN LP+DI+V+ W+PV E +SARFDC R Y+Y
Sbjct: 154 ITLPENVDVSTKATSSATSELPYVKMLNRVLPQDIRVLDWAPVAEGFSARFDCQSRTYRY 213
Query: 257 WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW-QNVQFN 315
+FP+ LD+ M +AA+ GTHDFRNLCKM+VGNGV+ F+R + A V A Q+
Sbjct: 214 YFPRGSLDVALMAEAAKRYEGTHDFRNLCKMDVGNGVLQFERTILSATVKPAQPQHASST 273
Query: 316 D-----IKEVVDSEPSFKK-----------GQGNEKPEIIQQLVDIEKYPR 350
D I E+ + + GQ E +II QL+D+E PR
Sbjct: 274 DQYDLFIFEIKGLAFLYHQVRCMMAVLLLIGQKLEALDIINQLLDVENNPR 324
>gi|351698951|gb|EHB01870.1| tRNA pseudouridine synthase 3 [Heterocephalus glaber]
Length = 292
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 99/161 (61%), Gaps = 20/161 (12%)
Query: 210 EESDD-NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAM 268
E SDD E+ Y +LN LP DI+V+AW+PV +SARF CL R Y+Y+FP A LDI M
Sbjct: 35 EVSDDAKEIRYTHILNRVLPPDIRVLAWAPVESSFSARFSCLERTYRYFFPCADLDIVRM 94
Query: 269 HKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNV---QFNDIKEVVDSEP 325
+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A V Q++ ++ + ++ E
Sbjct: 95 NYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSLGEERWQEPFQLCQFEV 154
Query: 326 S----------------FKKGQGNEKPEIIQQLVDIEKYPR 350
+ F GQG EKPE+I +L++IEK P+
Sbjct: 155 TGQAFLYHQVRCMMAILFLIGQGMEKPEVIDELLNIEKNPQ 195
>gi|307181189|gb|EFN68889.1| Transcription initiation factor TFIID subunit 8 [Camponotus
floridanus]
Length = 291
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 77/105 (73%)
Query: 92 AVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF 151
++T ++ I E G + ++CEL+ R +P++ADV+LALI +G+ + ++TYAKR RTV
Sbjct: 36 SLTEMLQSFIVETGASARNYCELSGRTEPLIADVILALINMGMKVDNIETYAKRQNRTVL 95
Query: 152 PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
P + TQ K LSILQAGVKQ HPPHIP YLP FPDPHAYIRTP
Sbjct: 96 PALQQQTQAKQLSILQAGVKQSHPPHIPNYLPSFPDPHAYIRTPT 140
>gi|126302589|sp|Q9BZE2.3|PUS3_HUMAN RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|12276176|gb|AAG50280.1|AF325689_1 FKSG32 [Homo sapiens]
gi|189055315|dbj|BAG36917.1| unnamed protein product [Homo sapiens]
Length = 481
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 101/184 (54%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ + D N E+ Y +LN LP DI+++AW+PV +SA
Sbjct: 127 VISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSA 186
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 187 RFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQV 246
Query: 306 T--------SAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
WQ QF + F GQG EKPEII +L++IE
Sbjct: 247 QLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIE 306
Query: 347 KYPR 350
K P+
Sbjct: 307 KNPQ 310
>gi|199559785|ref|NP_112597.3| tRNA pseudouridine(38/39) synthase isoform 1 [Homo sapiens]
Length = 481
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 101/184 (54%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ + D N E+ Y +LN LP DI+++AW+PV +SA
Sbjct: 127 VISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSA 186
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 187 RFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQV 246
Query: 306 T--------SAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
WQ QF + F GQG EKPEII +L++IE
Sbjct: 247 QLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIE 306
Query: 347 KYPR 350
K P+
Sbjct: 307 KNPQ 310
>gi|327282044|ref|XP_003225754.1| PREDICTED: tRNA pseudouridine synthase 3-like [Anolis carolinensis]
Length = 455
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 102/181 (56%), Gaps = 26/181 (14%)
Query: 196 VVTLKIRSKL--TSPGEESDDN------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 247
V++L +RS L PG+ + + E+ Y +LN LP DI+V+AW+PV +SARF
Sbjct: 128 VISLDLRSNLPENKPGDTATNKATKASEEIHYTHILNQVLPPDIRVLAWAPVEPNFSARF 187
Query: 248 DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA---- 303
+CL R Y+Y+FP A LD+ M++AAQ VGTHDFRNLCKM+V NGV +F R + A
Sbjct: 188 NCLKRTYRYFFPCATLDVALMNRAAQKFVGTHDFRNLCKMDVANGVTSFHRTILAAEVQP 247
Query: 304 --GVTSAWQNVQFNDIKEVVDSEPS------------FKKGQGNEKPEIIQQLVDIEKYP 349
G + Q F V + F GQ E+PEII +L+DIEK P
Sbjct: 248 VDGESETEQQNPFRMYYFEVTGQAFLYHQVRCMMAILFLIGQRMERPEIIDELLDIEKNP 307
Query: 350 R 350
R
Sbjct: 308 R 308
>gi|119588071|gb|EAW67667.1| pseudouridylate synthase 3 [Homo sapiens]
Length = 481
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 101/184 (54%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ + D N E+ Y +LN LP DI+++AW+PV +SA
Sbjct: 127 VISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSA 186
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 187 RFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQV 246
Query: 306 T--------SAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
WQ QF + F GQG EKPEII +L++IE
Sbjct: 247 QLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIE 306
Query: 347 KYPR 350
K P+
Sbjct: 307 KNPQ 310
>gi|16550495|dbj|BAB70990.1| unnamed protein product [Homo sapiens]
Length = 481
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 101/184 (54%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ + D N E+ Y +LN LP DI+++AW+PV +SA
Sbjct: 127 VISLDLRSQFPRGRDSEDLNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSA 186
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 187 RFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQV 246
Query: 306 T--------SAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
WQ QF + F GQG EKPEII +L++IE
Sbjct: 247 QLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIE 306
Query: 347 KYPR 350
K P+
Sbjct: 307 KNPQ 310
>gi|14919399|gb|AAH04822.1| Pseudouridylate synthase 3 [Homo sapiens]
gi|124000287|gb|ABM87652.1| pseudouridylate synthase 3 [synthetic construct]
gi|124000289|gb|ABM87653.1| pseudouridylate synthase 3 [synthetic construct]
gi|157928602|gb|ABW03597.1| pseudouridylate synthase 3 [synthetic construct]
gi|157929242|gb|ABW03906.1| pseudouridylate synthase 3 [synthetic construct]
Length = 481
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 101/184 (54%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ + D N E+ Y +LN LP DI+++AW+PV +SA
Sbjct: 127 VISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSA 186
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 187 RFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQV 246
Query: 306 T--------SAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
WQ QF + F GQG EKPEII +L++IE
Sbjct: 247 QLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIE 306
Query: 347 KYPR 350
K P+
Sbjct: 307 KNPQ 310
>gi|41056053|ref|NP_956361.1| tRNA pseudouridine synthase 3 [Danio rerio]
gi|29436973|gb|AAH49516.1| Zgc:56653 [Danio rerio]
Length = 460
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 96/160 (60%), Gaps = 19/160 (11%)
Query: 209 GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAM 268
G+ S D ELPY+K+LN LP DI+++ W+PV +SARFDC R Y+Y+FP+ LD++ M
Sbjct: 148 GKTSAD-ELPYVKILNRVLPHDIRILQWAPVESGFSARFDCQSRTYRYYFPRGDLDLELM 206
Query: 269 HKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW--QNVQFND-----IKEVV 321
+AA+ GTHDFRNLCKM+VGNGV+ F+R + A V A ND + +V
Sbjct: 207 AEAAKRYEGTHDFRNLCKMDVGNGVLQFQRTILSASVQPAQLPHPSVHNDPHQLFVFQVK 266
Query: 322 DSEPSFKK-----------GQGNEKPEIIQQLVDIEKYPR 350
+ + GQ E PE+I QL+D+EK PR
Sbjct: 267 GLALLYHQVRCMMALLLLIGQKLEAPEVIDQLLDVEKNPR 306
>gi|397498358|ref|XP_003819951.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pan paniscus]
Length = 481
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 100/184 (54%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS + D N E+ Y +LN LP DI+++AW+PV +SA
Sbjct: 127 VISLDLRSHFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSA 186
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 187 RFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQV 246
Query: 306 T--------SAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
WQ QF + F GQG EKPEII +L++IE
Sbjct: 247 QLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIE 306
Query: 347 KYPR 350
K P+
Sbjct: 307 KNPQ 310
>gi|114641137|ref|XP_001148378.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pan troglodytes]
gi|410211820|gb|JAA03129.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410257886|gb|JAA16910.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410299778|gb|JAA28489.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410328501|gb|JAA33197.1| pseudouridylate synthase 3 [Pan troglodytes]
Length = 481
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 100/184 (54%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS + D N E+ Y +LN LP DI+++AW+PV +SA
Sbjct: 127 VISLDLRSHFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSA 186
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 187 RFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQV 246
Query: 306 T--------SAWQN----VQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
WQ QF + F GQG EKPEII +L++IE
Sbjct: 247 QLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIE 306
Query: 347 KYPR 350
K P+
Sbjct: 307 KNPQ 310
>gi|332022258|gb|EGI62573.1| Transcription initiation factor TFIID subunit 8 [Acromyrmex
echinatior]
Length = 294
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 75/105 (71%)
Query: 92 AVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF 151
+T ++ I E+G ++CEL+ R +P++ADV+LALI +GI + ++TYAKR RTV
Sbjct: 36 TLTEMLQSFIVEIGASGRNYCELSGRTEPLIADVILALINMGIKLDNIETYAKRQSRTVL 95
Query: 152 PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
P + TQ K L+ILQAGVKQ HP HIP YLP FPDPHAYIRTP
Sbjct: 96 PTLQQQTQAKQLNILQAGVKQGHPSHIPNYLPSFPDPHAYIRTPT 140
>gi|431904392|gb|ELK09777.1| tRNA pseudouridine synthase 3 [Pteropus alecto]
Length = 481
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 105/185 (56%), Gaps = 31/185 (16%)
Query: 196 VVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVPEKYS 244
V++L +RS G +S+D E+ Y +LN LP DI+V+AW+ V +S
Sbjct: 126 VISLDLRSHFPK-GRDSEDFNLTDEVNDAAKEIRYTHILNRVLPPDIRVLAWASVEPSFS 184
Query: 245 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
ARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF R + A
Sbjct: 185 ARFSCLERTYRYFFPRADLDIVTMNCAAQKYVGTHDFRNLCKMDVANGVINFHRTILSAQ 244
Query: 305 VTSAWQNV---QFNDIKEVVDSEPS----------------FKKGQGNEKPEIIQQLVDI 345
V Q + ++ + ++ E + F GQG EKPEII +L+++
Sbjct: 245 VQLVGQGLAEERWQEPFQICQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNV 304
Query: 346 EKYPR 350
EK P+
Sbjct: 305 EKNPQ 309
>gi|432923365|ref|XP_004080439.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Oryzias
latipes]
Length = 471
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 91/153 (59%), Gaps = 17/153 (11%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQY 274
+ELPY+KMLN LP+DI+++ +PV E +SARFDC R Y+Y+FP+ LD+ M AA+
Sbjct: 172 SELPYVKMLNRVLPQDIRILDCAPVAEGFSARFDCQSRTYRYYFPRGSLDVALMEDAAKR 231
Query: 275 LVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW-QNVQFND-----IKEVVDSEPSFK 328
GTHDFRNLCKM+VGNGV+ F+R + A + W Q D + EV +
Sbjct: 232 YEGTHDFRNLCKMDVGNGVLQFERTILSATIRPMWSQQASSMDQYSLFVFEVKGLAFLYH 291
Query: 329 K-----------GQGNEKPEIIQQLVDIEKYPR 350
+ GQ E P+II QL+D+E PR
Sbjct: 292 QVRCMMAVLLLIGQKLEDPQIISQLLDVENNPR 324
>gi|291383625|ref|XP_002708689.1| PREDICTED: CG3045-like [Oryctolagus cuniculus]
Length = 480
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 109/184 (59%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSKL--------TSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ + +E++D E+ Y +LN LP DI+++AW+PV +SA
Sbjct: 126 VISLDLRSQFPMAKDSESCNSKDEANDVAEEIRYTHILNRVLPPDIRILAWAPVDPGFSA 185
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 186 RFSCLERTYHYFFPRADLDIVTMNCAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAKV 245
Query: 306 TSAWQNV---QFNDIKEVVDSEPS----------------FKKGQGNEKPEIIQQLVDIE 346
Q++ ++ + ++ E + F GQG EKP+II +L+++E
Sbjct: 246 QLVGQSLGEERWQEHFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPDIIDELLNVE 305
Query: 347 KYPR 350
K P+
Sbjct: 306 KNPQ 309
>gi|153792349|ref|NP_001093370.1| pseudouridylate synthase 3 [Xenopus laevis]
gi|148745611|gb|AAI42593.1| LOC100101318 protein [Xenopus laevis]
Length = 507
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 91/156 (58%), Gaps = 26/156 (16%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E+ Y+ +LN LP DI+V++W+PVP +SARF C R Y+Y FP A LD++AM KAA+ L
Sbjct: 137 EIRYVHILNRVLPPDIRVLSWAPVPPSFSARFSCGSRTYRYLFPCAQLDVEAMDKAARLL 196
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTS---------------------AWQNVQF 314
GTHDFRNLCKM+V NGV+NF R V A V A+ Q
Sbjct: 197 EGTHDFRNLCKMDVANGVLNFTRTVLSARVGPVPEIPGDMGPFQLYHLQITGLAFLYHQV 256
Query: 315 NDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
I V+ F GQG EKPE+I +L+D+ K PR
Sbjct: 257 RCIMGVL-----FLVGQGKEKPEVITELLDVVKNPR 287
>gi|344291496|ref|XP_003417471.1| PREDICTED: tRNA pseudouridine synthase 3-like [Loxodonta africana]
Length = 480
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 106/204 (51%), Gaps = 34/204 (16%)
Query: 196 VVTLKIRSKLTSPGEESD----------DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS + D E+ Y +LN LP DI+++AW+PV +SA
Sbjct: 126 VISLDLRSHFPKDKDSEDFQLKDEANDSAKEIRYTHILNRVLPPDIRILAWAPVEPAFSA 185
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 186 RFSCLERTYRYFFPRADLDIAIMSYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQV 245
Query: 306 T------------SAWQNVQFNDIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIE 346
++Q QF + F GQG EKPEII +L++IE
Sbjct: 246 QLVGQSRGEDRWEESFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIE 305
Query: 347 KYPRIKSAQFPWSSTGATTPNELF 370
K++Q P S P L+
Sbjct: 306 -----KNSQKPQYSMAVEFPLVLY 324
>gi|320163253|gb|EFW40152.1| tRNA-pseudouridine synthase [Capsaspora owczarzaki ATCC 30864]
Length = 548
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 98/196 (50%), Gaps = 43/196 (21%)
Query: 196 VVTLKIRSKLTSP----------------GEESDDNELPYLKMLNNNLPRDIKVVAWSPV 239
VV+L +R+ LT E+ EL Y+ LN LP DI+VVAW+PV
Sbjct: 203 VVSLDVRTNLTEGVGVIQQESAIPFQKGRKTEATHAELEYVFKLNRQLPADIRVVAWTPV 262
Query: 240 PEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRL 299
P + ARF CL+R YKY+FP+ ++I+AM +AAQY VGTHD+RN CK N NGV +F R
Sbjct: 263 PLAFDARFSCLYRKYKYFFPKNNMNIEAMQRAAQYFVGTHDYRNFCKTNFDNGVKSFVRR 322
Query: 300 VTHAGVTSAWQNVQFNDIKEVVDSEPS--------------------------FKKGQGN 333
+ V + + N + D E F GQG
Sbjct: 323 ILAFDVVKS-TCLPINSATDATDLEGQAAEMYELNVLGFAFLYHQVRCMTSILFMVGQGL 381
Query: 334 EKPEIIQQLVDIEKYP 349
E PE+++ ++DIEK P
Sbjct: 382 EPPEVVEHMLDIEKCP 397
>gi|307200961|gb|EFN80950.1| Transcription initiation factor TFIID subunit 8 [Harpegnathos
saltator]
Length = 291
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 74/103 (71%)
Query: 94 TSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFPP 153
T ++ I E G + ++CEL+ R +P++ADV+LALI +G+ + L+TYAKR RTV P
Sbjct: 38 TEMLQSFIVETGASARNYCELSGRTEPLIADVILALINMGVKLDNLETYAKRQNRTVLPA 97
Query: 154 VAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
+ TQ K L+ILQAG+KQ HP HIP YLP FPDPHAYIRTP
Sbjct: 98 LQQQTQSKQLNILQAGIKQSHPSHIPNYLPAFPDPHAYIRTPT 140
>gi|383847987|ref|XP_003699634.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Megachile rotundata]
Length = 291
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 76/105 (72%)
Query: 92 AVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF 151
+T ++ I EVG + ++CEL+ R +P++AD+++ALI +GI + L+ Y KRP RTV
Sbjct: 36 TLTEMLQSFIVEVGESARNYCELSGRTEPLIADIIVALISMGIKLDNLENYGKRPNRTVL 95
Query: 152 PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PP+ TQ K L+ILQAGVKQ HP HIP +LP FPDPHAYIRTP
Sbjct: 96 PPLQQQTQSKQLNILQAGVKQGHPAHIPSHLPPFPDPHAYIRTPT 140
>gi|47214586|emb|CAG00940.1| unnamed protein product [Tetraodon nigroviridis]
Length = 412
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 92/153 (60%), Gaps = 17/153 (11%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQY 274
+ELPY+KMLN LP DI++ W+P E +SARFDC R Y+Y+FP+ L+++ M AA+
Sbjct: 170 SELPYVKMLNRVLPHDIRIWNWAPAAEGFSARFDCQSRTYRYYFPRGSLNVELMADAAER 229
Query: 275 LVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT-----SAWQNVQFND-IKEVVDSEPSFK 328
GTHDFRNLCKM+VGNGV+ F+R + + VT A Q++ + EV +
Sbjct: 230 YEGTHDFRNLCKMDVGNGVLQFERTILSSSVTPVNPEHASSTDQYDIFVFEVRGLAFLYH 289
Query: 329 K-----------GQGNEKPEIIQQLVDIEKYPR 350
+ GQ E PEII QL+D++ PR
Sbjct: 290 QVRCMMALLLLIGQKLEAPEIINQLLDVQSNPR 322
>gi|47208381|emb|CAF93145.1| unnamed protein product [Tetraodon nigroviridis]
Length = 409
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 92/153 (60%), Gaps = 17/153 (11%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQY 274
+ELPY+KMLN LP DI++ W+P E +SARFDC R Y+Y+FP+ L+++ M AA+
Sbjct: 167 SELPYVKMLNRVLPHDIRIWNWAPAAEGFSARFDCQSRTYRYYFPRGSLNVELMADAAER 226
Query: 275 LVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT-----SAWQNVQFND-IKEVVDSEPSFK 328
GTHDFRNLCKM+VGNGV+ F+R + + VT A Q++ + EV +
Sbjct: 227 YEGTHDFRNLCKMDVGNGVLQFERTILSSSVTPVNPEHASSTDQYDIFVFEVRGLAFLYH 286
Query: 329 K-----------GQGNEKPEIIQQLVDIEKYPR 350
+ GQ E PEII QL+D++ PR
Sbjct: 287 QVRCMMALLLLIGQKLEAPEIINQLLDVQSNPR 319
>gi|380024337|ref|XP_003695957.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Apis florea]
Length = 291
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 76/103 (73%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ I EVG + ++CEL+ R +P++ADV++ALI +GI + L++Y KR RTV P
Sbjct: 37 LTEMLQSFIVEVGESARNYCELSGRTEPLIADVIVALINMGIKLDNLESYGKRANRTVLP 96
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTP 195
P+ TQ K L+ILQAGVKQ HP HIP YLP FPDPHAYIRTP
Sbjct: 97 PLQQQTQSKQLNILQAGVKQSHPSHIPSYLPPFPDPHAYIRTP 139
>gi|328779115|ref|XP_395210.2| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Apis mellifera]
Length = 297
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 76/104 (73%)
Query: 92 AVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF 151
+T ++ I EVG + ++CEL+ R +P++ADV++ALI +GI + L++Y KR RTV
Sbjct: 42 VLTEMLQSFIVEVGESARNYCELSGRTEPLIADVIVALINMGIKLDNLESYGKRANRTVL 101
Query: 152 PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTP 195
PP+ TQ K L+ILQAGVKQ HP HIP YLP FPDPHAYIRTP
Sbjct: 102 PPLQQQTQSKQLNILQAGVKQSHPSHIPSYLPPFPDPHAYIRTP 145
>gi|158298322|ref|XP_318500.4| AGAP010807-PA [Anopheles gambiae str. PEST]
gi|157014345|gb|EAA13705.4| AGAP010807-PA [Anopheles gambiae str. PEST]
Length = 485
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 104/176 (59%), Gaps = 23/176 (13%)
Query: 196 VVTLKIRSKLTSPGEESD----DNELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCL 250
V++L +RSK +P + D NEL Y MLN LP +I+ +AW P V YSARFDC
Sbjct: 138 VISLDVRSKF-APELQLDANNLTNELDYCAMLNRVLPEEIRCLAWMPMVNPAYSARFDCR 196
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
R Y+Y+FP+ L+I AM ++A+YLVG HDFRNLCKM+VGNGVV+F R + + + +
Sbjct: 197 SRTYRYFFPRGDLNITAMEESARYLVGAHDFRNLCKMDVGNGVVSFVRSIDAISIKPSQR 256
Query: 311 NVQFN----DIKEVVDSEPSF-------------KKGQGNEKPEIIQQLVDIEKYP 349
+ + + D+ + +F GQG EKP +++ L+D+E+ P
Sbjct: 257 DSERDGSSYDMMYLELQGKAFLWHQVRCIMAVLLLVGQGREKPSVVKDLLDVEQNP 312
>gi|45360593|ref|NP_988969.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis]
gi|38174435|gb|AAH61416.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis]
Length = 505
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 90/156 (57%), Gaps = 26/156 (16%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E+ Y+ +LN LP DI+V++W+ VP +SARF C R Y+Y FP A LD++AM KAA+ L
Sbjct: 140 EIRYVHILNRVLPPDIRVLSWAAVPPSFSARFSCRSRTYRYLFPCAQLDVEAMDKAARLL 199
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTS---------------------AWQNVQF 314
GTHDFRNLCKM+V NGV+NF R V A V A+ Q
Sbjct: 200 EGTHDFRNLCKMDVANGVMNFIRTVLSARVEPVPEIPGDMGPFQLYRLQITGLAFLYHQV 259
Query: 315 NDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
I V+ F GQG EKPE+I +L+D+ K PR
Sbjct: 260 RCIMGVL-----FLVGQGKEKPEVITELLDVAKNPR 290
>gi|410895609|ref|XP_003961292.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Takifugu
rubripes]
Length = 447
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 91/154 (59%), Gaps = 19/154 (12%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQY 274
+ELPY+KMLN LP+DI+++ W+P E +SARFDC R Y+Y+FP+ L+++ M AA+
Sbjct: 168 SELPYVKMLNRVLPQDIRILDWAPAEEGFSARFDCQSRTYRYYFPRGALNLELMADAAKR 227
Query: 275 LVGTHDFRNLCKMNVGNGVVNFKRLV----------THAGVTSAWQNVQFNDIKEVVDSE 324
G HDFRNLCKM+VGNGV+ F+R + HA T + F ++K +
Sbjct: 228 YEGKHDFRNLCKMDVGNGVLQFERTILSASIRPVNPIHASSTDQYDIFIF-EVKGLAFLY 286
Query: 325 PSFK--------KGQGNEKPEIIQQLVDIEKYPR 350
+ GQ E PEII QL+D++ PR
Sbjct: 287 HQVRCMMALLLLIGQELEAPEIINQLLDVQSNPR 320
>gi|312378112|gb|EFR24771.1| hypothetical protein AND_10418 [Anopheles darlingi]
Length = 376
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 100/182 (54%), Gaps = 35/182 (19%)
Query: 196 VVTLKIRSKLT----SPGEESDDNELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCL 250
V+++ +RSK+ E+S EL Y MLN LP +I+ +AW P V YSARFDC
Sbjct: 137 VISIDVRSKIAPEDDQLSEDSLATELDYCGMLNRVLPEEIRCLAWMPMVNPGYSARFDCR 196
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLV----THAGVT 306
R Y+Y+FP+ L IDAM +A ++LVG HDFRNLCKM+VGNGVVNF R + HA T
Sbjct: 197 SRTYRYFFPRGNLRIDAMQEACRHLVGAHDFRNLCKMDVGNGVVNFVRSIDECTIHASQT 256
Query: 307 SA-------------------WQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEK 347
+ W V+ I V+ G G E P I+++L+D+++
Sbjct: 257 DSSGMGSYDMMYLQLRGKAFLWHQVRC--IMAVL-----LLVGDGKEDPTIVKELLDVDR 309
Query: 348 YP 349
P
Sbjct: 310 NP 311
>gi|357119728|ref|XP_003561586.1| PREDICTED: tRNA pseudouridine synthase 3-like [Brachypodium
distachyon]
Length = 450
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 95/171 (55%), Gaps = 18/171 (10%)
Query: 196 VVTLKIRSKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
V++L +RS L PG D +E+ Y+K+LN LPRDI+V+ W PV + ARF CL R
Sbjct: 179 VISLYLRSNLKDPGGNVLDERSEIDYVKVLNRMLPRDIRVIGWCPVAADFLARFSCLGRE 238
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ 313
YKY F + GLD+ M KAA +G HDFRN CKM+ N V N++R +T + SA+
Sbjct: 239 YKYLFWKGGLDVPKMQKAASKFIGEHDFRNFCKMDAAN-VSNYRRHITDFDI-SAYDERS 296
Query: 314 FNDIKEVVDSEPS--------------FKKGQGNEKPEIIQQLVDIEKYPR 350
ND ++ + S F GQG E P ++ L+DI + PR
Sbjct: 297 NNDELWAMNIKGSAFLWHQVRCMVAVLFLIGQGLESPCVVDSLLDITRTPR 347
>gi|242008043|ref|XP_002424822.1| tRNA pseudouridine synthase, putative [Pediculus humanus corporis]
gi|212508372|gb|EEB12084.1| tRNA pseudouridine synthase, putative [Pediculus humanus corporis]
Length = 430
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 126/266 (47%), Gaps = 32/266 (12%)
Query: 194 TPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
+ V++L +RSKL +P E+ + E+ Y MLN LP IK +W+ V +R DC R
Sbjct: 124 SQVISLDVRSKLENPNHENAEQEIEYCSMLNRLLPPFIKCYSWAHVGSDVGSRHDCSERT 183
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT------- 306
YKY+FP+ LDI+ M +AA+ L+G+HDFRNLCKM+V NG+ NF R + +A +
Sbjct: 184 YKYYFPKGNLDINLMREAAKSLLGSHDFRNLCKMDVANGITNFNRNIIYADIKPCSFLLE 243
Query: 307 --SAWQNVQFNDIKEVVDSEPSFKK--------GQGNEKPEIIQQLVDIEKYPRIKSAQF 356
S +Q F +IK + GQ E P+II L+DI K P
Sbjct: 244 KQSGYQFYIF-EIKSKCFLYHQIRSIMSVLLLVGQKKESPDIINDLLDINKNPAK----- 297
Query: 357 PWSSTGATTPNELFRRVFLLSFLAWVDQYRIRQTAHCNIFTNLCTFYVPTYLPSLGEMIK 416
P P LF F L W + + I N + + S+ MI+
Sbjct: 298 PQYDLALPMPLNLFEAQFTSISLKW----NVNENNITKIIKNFQELWNDFSVKSI--MIR 351
Query: 417 DTVRE---SKCTMGDLDINHLIEGEF 439
D + + K G++D +G++
Sbjct: 352 DVINDLNKLKGNYGEIDEIQSSQGDY 377
>gi|443732826|gb|ELU17390.1| hypothetical protein CAPTEDRAFT_127384, partial [Capitella teleta]
Length = 372
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 102/189 (53%), Gaps = 40/189 (21%)
Query: 194 TPVVTLKIRSKL-TSPG------EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
T V++L++R+ L PG S E+P+ KMLN LP +I+V+AW PV E +SAR
Sbjct: 66 TQVISLEVRTNLLEGPGVRVPEDNASRGKEMPFSKMLNGCLPPEIRVIAWCPVDEDFSAR 125
Query: 247 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKR-------- 298
F C R YKY+FP+A L++D M AA L+G HDFRN CKM+V NGV+ + R
Sbjct: 126 FSCQSRTYKYFFPRAQLNLDVMRAAAAKLIGLHDFRNFCKMDVRNGVIEYMRRISEIHIE 185
Query: 299 ----------------LVTHAGVTSAWQNVQ-FNDIKEVVDSEPSFKKGQGNEKPEIIQQ 341
++T G + W V+ I ++ G+G E PE+I
Sbjct: 186 PFNSEYAAEDDGYSMCVMTVHGKSFLWHQVRCIAAILLII--------GEGKETPELIDD 237
Query: 342 LVDIEKYPR 350
L+++EK+P+
Sbjct: 238 LLNVEKHPQ 246
>gi|89266772|emb|CAJ81267.1| pseudouridine synthase 3 [Xenopus (Silurana) tropicalis]
Length = 505
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 89/156 (57%), Gaps = 26/156 (16%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E+ Y+ +LN LP DI+V++W+ VP +SARF C R Y+Y F A LD++AM KAA+ L
Sbjct: 140 EIRYVHILNRVLPPDIRVLSWAAVPPSFSARFSCRSRTYRYLFSCAQLDVEAMDKAARLL 199
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTS---------------------AWQNVQF 314
GTHDFRNLCKM+V NGV+NF R V A V A+ Q
Sbjct: 200 EGTHDFRNLCKMDVANGVMNFIRTVLSARVEPVPEIPGDMGPFQLYRLQITGLAFLYHQV 259
Query: 315 NDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
I V+ F GQG EKPE+I +L+D+ K PR
Sbjct: 260 RCIMGVL-----FLVGQGKEKPEVITELLDVAKNPR 290
>gi|242040775|ref|XP_002467782.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor]
gi|241921636|gb|EER94780.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor]
Length = 459
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 95/170 (55%), Gaps = 16/170 (9%)
Query: 196 VVTLKIRSKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
V++L +RS + G + D +E+ Y+K+LN LPRDI+V+ W PVP + ARF CL R
Sbjct: 187 VISLYLRSNIKDVGGDMLDERSEIDYVKVLNRILPRDIRVLGWCPVPADFHARFTCLSRE 246
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ 313
YKY F + LDI M KAA +G HDFRN CKM+ N V N++R +T +++ +
Sbjct: 247 YKYLFWKGDLDILEMQKAASKFIGEHDFRNFCKMDAAN-VSNYRRRITEFTISACDRRSN 305
Query: 314 FNDIKEVVDSEPS-------------FKKGQGNEKPEIIQQLVDIEKYPR 350
+++ ++ + F GQG E P ++ L+DI K PR
Sbjct: 306 NDELCSMMIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDITKTPR 355
>gi|449273859|gb|EMC83213.1| tRNA pseudouridine synthase 3, partial [Columba livia]
Length = 373
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 100/174 (57%), Gaps = 24/174 (13%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
V++L +RS L P + EL Y MLN LP DI+V+AW+PV ++SARF +R +
Sbjct: 117 VISLDLRSNLKQPSGDETAGELRYPHMLNRVLPPDIRVLAWAPVGPEFSARFSFFYRYFF 176
Query: 256 YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA------- 308
P+ LD+ MH+AAQ VGTHDFRN CKM+V NGV NF+R V A VT A
Sbjct: 177 ---PRGPLDVALMHRAAQRYVGTHDFRNFCKMDVANGVTNFQRTVLGAAVTPADAAQKSP 233
Query: 309 ------W------QNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
W Q ++ ++ +V F GQG E+PEII +L+D+EK PR
Sbjct: 234 ENPFGLWCFEVTGQAFLYHQVRCMVAV--LFLIGQGMERPEIIDELLDVEKNPR 285
>gi|384499620|gb|EIE90111.1| hypothetical protein RO3G_14822 [Rhizopus delemar RA 99-880]
Length = 444
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 96/172 (55%), Gaps = 27/172 (15%)
Query: 196 VVTLKIRS---KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 252
V+ L +RS KL E DD +LPY+ M+N+ LP DI+++AW+PV ++ARFDCL R
Sbjct: 138 VIALDVRSTQRKLIK--EHGDDRDLPYINMINSFLPEDIRILAWAPVATTFNARFDCLSR 195
Query: 253 NYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTH---------- 302
YKY+F + G DI+ M +AA Y++G+HDFRN C ++ + ++ R +
Sbjct: 196 TYKYFFKKEGQDIERMREAASYMIGSHDFRNFCLLDAARNLQHYTREIISFEINPVEQDF 255
Query: 303 -----AGVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
G W V++ I V+ F GQ E P IIQ L++I+K P
Sbjct: 256 YEVKLKGTGFLWHQVRY--IMSVL-----FLVGQRLEHPAIIQDLLNIDKIP 300
>gi|242009212|ref|XP_002425385.1| transcription initiation factor TFIID subunit, putative [Pediculus
humanus corporis]
gi|212509179|gb|EEB12647.1| transcription initiation factor TFIID subunit, putative [Pediculus
humanus corporis]
Length = 253
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 95/190 (50%), Gaps = 57/190 (30%)
Query: 6 DTNRSLLKSSVVALLAEVGFDAADNAALETLVEICQACKYTCLTVTAKVLSSHKEREKED 65
+ R L SSV LL EVGFD+A+ ALETL E+ Q+ +T SSH
Sbjct: 7 NARRKALVSSVSCLLTEVGFDSAEKIALETLTEMLQSL------ITELGYSSH------- 53
Query: 66 RIGESEGTCAEVTSVEDCYQRNWYKRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADV 125
CY CEL+ R +P++ DV
Sbjct: 54 -----------------CY---------------------------CELSGRTEPVIGDV 69
Query: 126 LLALIELGIPIHGLDTYAKRPMRTVFPPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLF 185
++AL+ +GI + G++++A+R RT +TQPK LSILQAGVKQ P H+P Y P+F
Sbjct: 70 VIALVNMGISLEGIESHARRQNRTTVQAPTSATQPKQLSILQAGVKQTPPSHVPDYFPVF 129
Query: 186 PDPHAYIRTP 195
PDPHAYIRTP
Sbjct: 130 PDPHAYIRTP 139
>gi|196007746|ref|XP_002113739.1| hypothetical protein TRIADDRAFT_26740 [Trichoplax adhaerens]
gi|190584143|gb|EDV24213.1| hypothetical protein TRIADDRAFT_26740, partial [Trichoplax
adhaerens]
Length = 279
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 20/171 (11%)
Query: 196 VVTLKIRSKLTS-PGEESDD-NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
V++L +R+ L S PG + +EL Y+K+LN LP DI+++AW+PV +SARF+ + R
Sbjct: 73 VISLNVRTNLASGPGVIVETVSELSYVKLLNKVLPGDIRILAWAPVDNDFSARFNTVSRT 132
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTS-----A 308
YKY+FP+A ++I+AM++AAQ L G HDFRN CKM++ N V NF+R + V S
Sbjct: 133 YKYYFPRANMNIEAMNEAAQRLKGEHDFRNFCKMDLAN-VSNFRREILSIKVQSIETPYV 191
Query: 309 WQNVQFNDIKEVVDSEPS------------FKKGQGNEKPEIIQQLVDIEK 347
QN F + +V + F GQG E II ++DIEK
Sbjct: 192 LQNQGFEMCEIIVCGKAFLWHQVRCMVAILFLIGQGLEDANIINYMLDIEK 242
>gi|312093536|ref|XP_003147717.1| hypothetical protein LOAG_12156 [Loa loa]
gi|307757118|gb|EFO16352.1| hypothetical protein LOAG_12156 [Loa loa]
Length = 414
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 95/168 (56%), Gaps = 25/168 (14%)
Query: 207 SPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDID 266
+ E + EL Y+KMLN+ LP +I+V+AW+PVPE +SAR+ C R Y Y FP+A DI+
Sbjct: 119 TSSETAVKGELQYVKMLNSTLPTNIRVLAWAPVPENFSARYRCTQRTYTYAFPRANFDIE 178
Query: 267 AMHKAAQYLVGTHDFRNLCKMNVGNGVV--NFKRLVTHAGVTSAWQN----------VQF 314
AM +A Q+LVG HDFRN C++++ G V N+ R +++A ++ N V
Sbjct: 179 AMRQACQFLVGEHDFRNFCRIDMNKGRVEMNYIRTISYADISLISNNSLLASKQSDEVTH 238
Query: 315 NDIKEVVDSEPSF-------------KKGQGNEKPEIIQQLVDIEKYP 349
+ ++ F + G GNEKPE+I +L+DI+ P
Sbjct: 239 YEFLQLTVKGSGFLWHQIRCIMALLCEIGLGNEKPEVISELLDIKLTP 286
>gi|156369650|ref|XP_001628088.1| predicted protein [Nematostella vectensis]
gi|156215055|gb|EDO36025.1| predicted protein [Nematostella vectensis]
Length = 464
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 97/183 (53%), Gaps = 26/183 (14%)
Query: 193 RTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 252
+ P V L+ S + + E+ Y+ +LN LP++I+V+AW+PV + ARF C +R
Sbjct: 155 KGPGVILRQESSVGRDTKGKTMKEILYVDILNKVLPKEIRVLAWAPVELDFDARFSCSYR 214
Query: 253 NYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNV 312
YKY FP A LDID M+ A++ L G HDFRN CKM+V NGV+ F R +T V N
Sbjct: 215 KYKYLFPSANLDIDLMNLASKKLEGEHDFRNFCKMDVANGVIQFTRNITSFKVQKV-SNA 273
Query: 313 QFN------------DIKEVVDSEPSF-------------KKGQGNEKPEIIQQLVDIEK 347
++ ++ E V +F GQG E+PE+I L+DIEK
Sbjct: 274 TYSAPGENKAKQRGYEMCEAVICGSAFLWHQVRCMMSILLMVGQGLEQPEVIDWLLDIEK 333
Query: 348 YPR 350
P+
Sbjct: 334 CPQ 336
>gi|321464475|gb|EFX75483.1| hypothetical protein DAPPUDRAFT_323292 [Daphnia pulex]
Length = 429
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 91/151 (60%), Gaps = 18/151 (11%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E+ Y+ +LN LP +I+++AW+P+ + SARFDC R Y Y+FP+A L+I+ M A+Q L
Sbjct: 161 EIDYVGILNKVLPPEIRMIAWAPINQSLSARFDCRQRTYHYYFPKANLNIERMRVASQSL 220
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTS----------------AWQNVQFNDIKE 319
+G HDFRNLCKM+VGNGV+ F R + + + Q ++ ++
Sbjct: 221 IGEHDFRNLCKMDVGNGVIKFDRRIMDIQIEAIDDDKANSYSMIRLKLIGQAFLWHQVRC 280
Query: 320 VVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
+V F GQG E+ IIQ+L+++E+ PR
Sbjct: 281 IV--AILFLIGQGKEETTIIQELLNVERNPR 309
>gi|241713555|ref|XP_002412103.1| pseudouridylate synthase, putative [Ixodes scapularis]
gi|215505180|gb|EEC14674.1| pseudouridylate synthase, putative [Ixodes scapularis]
Length = 398
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 102/191 (53%), Gaps = 39/191 (20%)
Query: 194 TPVVTLKIRSKLT------SPGEES--------DDNELPYLKMLNNNLPRDIKVVAWSPV 239
+ V+++ +RS LT +P S EL Y+K+LN LP DI+V+AW+P
Sbjct: 64 SQVISIDLRSNLTEGPEGTAPSARSIHSVISVARSTELDYVKILNGVLPPDIRVLAWAPA 123
Query: 240 PEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRL 299
+SARFDC R Y+Y+ P+ L + M +AA+ LVG HDFRNLCKM+VGNGV + R
Sbjct: 124 EPSFSARFDCQARTYRYFLPKGNLVVQRMREAAKLLVGEHDFRNLCKMDVGNGVTRYVRR 183
Query: 300 VTHA----------GVTSAWQNVQFNDIKEVVDSEPSFKK-----------GQGNEKPEI 338
+ G +S +Q + E+V + + GQG E+PE+
Sbjct: 184 ILSTELYDGEPEGDGGSSGYQMLCL----EIVGQAFLWHQVRCIVAILLLVGQGLEEPEV 239
Query: 339 IQQLVDIEKYP 349
+ +L+D+E +P
Sbjct: 240 VSKLLDVEAHP 250
>gi|391333028|ref|XP_003740926.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Metaseiulus
occidentalis]
Length = 457
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 26/182 (14%)
Query: 194 TPVVTLKIRSKL-------TSPGEES-----DDNELPYLKMLNNNLPRDIKVVAWSPVPE 241
+ V+TL +RS L T P + E+ Y+K+LN LP +I+++AWSPV
Sbjct: 168 SQVITLDLRSNLEDGVGVVTPPDYRAGRTQISGEEIDYVKILNRVLPAEIRMIAWSPVDP 227
Query: 242 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVT 301
+ SARFDC R+Y+Y+FP+ L +++M +A++ L G +DFRNLCKM+VGNGV F+R V
Sbjct: 228 RLSARFDCRMRSYRYFFPRGRLKVESMREASRLLEGENDFRNLCKMDVGNGVTQFRRRVE 287
Query: 302 HAGVTSAWQNVQFNDIKEVVDSEPSF-------------KKGQGNEKPEIIQQLVDIEKY 348
+ A + D+ V +F G+G E P I+ L+D+ K
Sbjct: 288 KCWI-EAPDGSEAADMCCFVIRSNAFLWHQIRCIVAVLLLVGEGKESPSIVSDLLDVGKN 346
Query: 349 PR 350
PR
Sbjct: 347 PR 348
>gi|194706182|gb|ACF87175.1| unknown [Zea mays]
gi|195612012|gb|ACG27836.1| hypothetical protein [Zea mays]
gi|414867030|tpg|DAA45587.1| TPA: pseudouridylate synthase isoform 1 [Zea mays]
gi|414867031|tpg|DAA45588.1| TPA: pseudouridylate synthase isoform 2 [Zea mays]
gi|414867032|tpg|DAA45589.1| TPA: pseudouridylate synthase isoform 3 [Zea mays]
gi|414867033|tpg|DAA45590.1| TPA: pseudouridylate synthase isoform 4 [Zea mays]
Length = 457
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 93/170 (54%), Gaps = 16/170 (9%)
Query: 196 VVTLKIRSKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
V++L +RS + G + D +E+ Y+K+LN LPRDI+V+ W PVP + ARF CL R
Sbjct: 185 VISLYLRSNIKDVGGDMLDERSEIDYVKVLNRILPRDIRVLGWCPVPADFHARFTCLSRE 244
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ 313
YKY F + LDI M KAA +G HDFRN CKM+ N V N++R +T +++ +
Sbjct: 245 YKYLFWKGDLDILEMQKAASKFIGEHDFRNFCKMDAAN-VSNYRRHITEFTISACDRRSN 303
Query: 314 FNDIKEVVDSEPS-------------FKKGQGNEKPEIIQQLVDIEKYPR 350
+++ + + F GQG E P ++ L+DI K R
Sbjct: 304 NDELCSMTIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSR 353
>gi|226533212|ref|NP_001145731.1| uncharacterized protein LOC100279238 [Zea mays]
gi|219884209|gb|ACL52479.1| unknown [Zea mays]
gi|414867029|tpg|DAA45586.1| TPA: pseudouridylate synthase [Zea mays]
Length = 486
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 93/170 (54%), Gaps = 16/170 (9%)
Query: 196 VVTLKIRSKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
V++L +RS + G + D +E+ Y+K+LN LPRDI+V+ W PVP + ARF CL R
Sbjct: 214 VISLYLRSNIKDVGGDMLDERSEIDYVKVLNRILPRDIRVLGWCPVPADFHARFTCLSRE 273
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ 313
YKY F + LDI M KAA +G HDFRN CKM+ N V N++R +T +++ +
Sbjct: 274 YKYLFWKGDLDILEMQKAASKFIGEHDFRNFCKMDAAN-VSNYRRHITEFTISACDRRSN 332
Query: 314 FNDIKEVVDSEPS-------------FKKGQGNEKPEIIQQLVDIEKYPR 350
+++ + + F GQG E P ++ L+DI K R
Sbjct: 333 NDELCSMTIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSR 382
>gi|354547215|emb|CCE43949.1| hypothetical protein CPAR2_501740 [Candida parapsilosis]
Length = 440
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 96/174 (55%), Gaps = 28/174 (16%)
Query: 196 VVTLKIRSKLTSPGEES---DDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V+++K+RS LT ++S DD E+ YL ++N NLP DIKV + P P + ARF C
Sbjct: 149 VISIKLRSNLTPEEQQSSTNDDREIDYLTIINANLPSDIKVHSICLHP-PADFDARFSCK 207
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA------- 303
R+Y+Y F + LDIDAM+KAA+Y G HDFRN CK++ + NF+R + +
Sbjct: 208 NRHYRYLFKSSNLDIDAMNKAAEYYQGQHDFRNFCKLDGSKQITNFERFIYSSKIIHLED 267
Query: 304 --------GVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
G W V+ + ++ F GQ EKPEI+ L+DI KYP
Sbjct: 268 DLYCFDLVGTAFLWHQVRC--MVAIL-----FLVGQHLEKPEIVTDLMDITKYP 314
>gi|351712567|gb|EHB15486.1| Bone morphogenetic protein receptor type-2 [Heterocephalus glaber]
Length = 1257
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 78/120 (65%), Gaps = 10/120 (8%)
Query: 196 VVTLKIRSK---------LTSPGEESDD-NELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ L E SDD E+ Y +L+ LP DI+V+AW+PV +SA
Sbjct: 120 VISLDLRSQFPKGKDSKDLNLKDEVSDDAKEIRYTHILSRVLPPDIRVLAWAPVESSFSA 179
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y Y+FP A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 180 RFSCLERTYCYFFPCADLDIVRMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTIQSAQV 239
>gi|225718836|gb|ACO15264.1| tRNA pseudouridine synthase 3 [Caligus clemensi]
Length = 423
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 105/185 (56%), Gaps = 30/185 (16%)
Query: 196 VVTLKIRSKL-TSPG-------------EESDDNELPYLKMLNNNLPRDIKVVAWSPVPE 241
VV++++RS L PG + + E+ Y K+LN+NLP DI+V+AW+P+
Sbjct: 124 VVSIELRSNLLEGPGVFDYPECRAHSRPNPTTNEEIDYCKILNSNLPPDIQVIAWAPLTN 183
Query: 242 K-YSARFDCLFRNYKYWFP-QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRL 299
+ +SARFDC R YKY FP A D+ + +A L+G+HDFRN CKM+V NGV+ + R
Sbjct: 184 RDFSARFDCKIREYKYIFPLGAARDLSRIQEAGAKLLGSHDFRNFCKMDVSNGVLTYIRR 243
Query: 300 VTHAGV----TSAWQNVQFNDIKEVVDS----------EPSFKKGQGNEKPEIIQQLVDI 345
+ V +S+ + ++K V ++ F GQG E+P +I +L+D+
Sbjct: 244 MLEVSVSPLESSSTDSYSLVELKIVGNAFLWHQIRCIVTVLFHIGQGLEEPSLIDELLDV 303
Query: 346 EKYPR 350
EK+PR
Sbjct: 304 EKHPR 308
>gi|351703596|gb|EHB06515.1| tRNA pseudouridine synthase 3 [Heterocephalus glaber]
Length = 448
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 102/184 (55%), Gaps = 29/184 (15%)
Query: 196 VVTLKIRSK---------LTSPGEESDD-NELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ L E SDD E Y +L+ LP DI+V+AW+PV +SA
Sbjct: 95 VISLDLRSQFPRGKDSKDLNLKDEVSDDAKEARYTHILSRVLPPDIRVLAWAPVECSFSA 154
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL Y Y+FP A L+ M+ AAQ VGTH FRNLCKM+V NGV+NF+R + A V
Sbjct: 155 RFSCLEHTYHYFFPCADLNSVRMNYAAQKYVGTHVFRNLCKMDVANGVINFQRTILSAQV 214
Query: 306 TSAWQNV---QFNDIKEVVDSEPS----------------FKKGQGNEKPEIIQQLVDIE 346
Q++ ++ + ++ E + F GQG EKPE+I +L+ IE
Sbjct: 215 QLVGQSLGEERWQEPFQLCQLEVTGQAFLYHQVRCMMAILFLIGQGMEKPEVIDELLKIE 274
Query: 347 KYPR 350
K P+
Sbjct: 275 KNPQ 278
>gi|449664207|ref|XP_002153998.2| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Hydra
magnipapillata]
Length = 426
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 92/168 (54%), Gaps = 14/168 (8%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
V+ L +RS EE E+ Y+++LN LP +I+++A++ VP+ + ARFDC R YK
Sbjct: 143 VIALNVRSNTLVSEEEDTREEISYVRLLNKILPPEIRMLAFARVPQDFDARFDCDTRMYK 202
Query: 256 YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFN 315
Y+FP +DI M AAQ VG DFRN CK++VGN V +F R + V NV
Sbjct: 203 YFFPAKRMDIKLMDAAAQKFVGEKDFRNFCKVDVGNNVNHFIRNIVSFKV-QMLNNVDLV 261
Query: 316 DIKEVVDSEPSF-------------KKGQGNEKPEIIQQLVDIEKYPR 350
DI E+ + +F G G EKPEII L+D+E P+
Sbjct: 262 DICEMEITGLAFLWHQVRCMVAVLLLIGLGVEKPEIIDHLLDVESCPK 309
>gi|427798085|gb|JAA64494.1| Putative pseudouridylate synthase, partial [Rhipicephalus
pulchellus]
Length = 439
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 209 GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAM 268
E S EL Y+K+LN LP +I+V+AW+PV + +SARFDC R Y+Y+FP+ LD++ M
Sbjct: 161 SEASRTEELDYVKILNGVLPPEIRVLAWAPVDQAFSARFDCRQRTYRYFFPRGSLDVERM 220
Query: 269 HKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
+ A LVG HDFRNLCKM+V NGV N+ R + +
Sbjct: 221 CEGAALLVGEHDFRNLCKMDVANGVTNYMRRILRTSI 257
>gi|255726904|ref|XP_002548378.1| tRNA pseudouridine synthase 3 [Candida tropicalis MYA-3404]
gi|240134302|gb|EER33857.1| tRNA pseudouridine synthase 3 [Candida tropicalis MYA-3404]
Length = 437
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 94/167 (56%), Gaps = 14/167 (8%)
Query: 196 VVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V+++++RS L+ + E DD E+ YL +LN NLP DIKV + P PE + ARF C+
Sbjct: 141 VISIELRSNLSKEDQANPELDDKEVDYLSILNANLPSDIKVHSICLRP-PEDFDARFSCI 199
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
R+Y+Y F + LDID M++ A G HDFRN CK++ + NF+R + + +
Sbjct: 200 SRHYRYIFKKQNLDIDLMNQGASLYQGIHDFRNFCKLDGSKQITNFQREIYSSKILHLHD 259
Query: 311 NVQFNDIKEVVDSEPS--------FKKGQGNEKPEIIQQLVDIEKYP 349
+ D+K F GQG EKPEI+ +L+D+EKYP
Sbjct: 260 DYYCFDLKGSAFLWHQVRCMVAILFTIGQGLEKPEIVTELMDMEKYP 306
>gi|340726384|ref|XP_003401539.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Bombus terrestris]
gi|350423971|ref|XP_003493649.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Bombus impatiens]
Length = 291
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 75/104 (72%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ + EVG + ++CEL+ R +P++ADV++ALI +GI + L++Y KR RTV P
Sbjct: 37 LTEMLQSFLIEVGESARNYCELSGRTEPLIADVIVALINMGIKLDNLESYGKRANRTVLP 96
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
+ TQ K L+ILQAGVKQ HP HIP YLP FPDPHAYIRTP
Sbjct: 97 QLQQQTQSKQLNILQAGVKQSHPSHIPSYLPPFPDPHAYIRTPT 140
>gi|324501041|gb|ADY40469.1| tRNA pseudouridine synthase tag-124 [Ascaris suum]
gi|324504466|gb|ADY41930.1| tRNA pseudouridine synthase tag-124 [Ascaris suum]
Length = 388
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 55/209 (26%)
Query: 173 PHPPHIPPYLPLFPDPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIK 232
P H+ + P DPH+ I P +EL YLKMLN LP++I+
Sbjct: 70 PEGEHV--FWPENADPHSRITPP------------------HSELMYLKMLNGVLPKNIR 109
Query: 233 VVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNG 292
V+AW+PV ++ARF C R YKY FP+ D++A+ KA L+G HDFRN+C++++
Sbjct: 110 VLAWAPVALDFNARFSCTKRVYKYAFPRGDFDLEAIRKACSLLIGEHDFRNICRIDLNKA 169
Query: 293 VV--NFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPS------------------------ 326
V ++ R+V A ++ ++ + + V SEP
Sbjct: 170 RVEMSYVRMVFDASISVVLESGE----RVEVSSEPEPHSPYSLVEFTMISSGFLWHQIRC 225
Query: 327 -----FKKGQGNEKPEIIQQLVDIEKYPR 350
++ G+GNEKPE+I +L+DIEK PR
Sbjct: 226 VMALMYEIGKGNEKPEVISELLDIEKTPR 254
>gi|308807767|ref|XP_003081194.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri]
gi|116059656|emb|CAL55363.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri]
Length = 813
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 27/177 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
+VTL++RS S E EL Y+ +LN LP D++ + W+PV E+ +ARFDC +R YK
Sbjct: 524 IVTLQVRSNGASDPRE----ELDYVGLLNRALPSDVRALGWAPVDEELNARFDCKWRQYK 579
Query: 256 YWFPQ-AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA------ 308
Y+F + LD++AM +AA+ G HDFRN C+M+ N V +F R V + A
Sbjct: 580 YFFEKTTALDLEAMGEAARAFEGVHDFRNFCRMDAEN-VKSFTRRVLECTIEEAGDGKLM 638
Query: 309 WQNV--------QFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPRIKSAQFP 357
+ NV Q ++ V+ F G G+E P ++++L+D+E+ PR Q+P
Sbjct: 639 YINVRGTAFLWHQVRNMASVL-----FMVGLGHEPPSVVERLLDLERTPR--KPQYP 688
>gi|302808177|ref|XP_002985783.1| hypothetical protein SELMODRAFT_181988 [Selaginella moellendorffii]
gi|300146290|gb|EFJ12960.1| hypothetical protein SELMODRAFT_181988 [Selaginella moellendorffii]
Length = 372
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 85/155 (54%), Gaps = 23/155 (14%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
E+DD+E+ Y+ LN LP DI+V+ W PVP + ARF CL+R YKY+F GL+IDAM +
Sbjct: 174 ETDDDEIDYVSSLNRALPADIRVLGWCPVPPGFHARFSCLYREYKYFFIDDGLNIDAMKQ 233
Query: 271 AAQYLVGTHDFRNLCKMNVGNGVVNFKR--------------LVTHA-GVTSAWQNVQFN 315
A+Q L+G HDFRN CKM+ N + N+ R V H G W V+
Sbjct: 234 ASQRLLGEHDFRNFCKMDADN-IHNYTRQILAFDILPIEECLWVMHVRGNAFLWHQVR-- 290
Query: 316 DIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
+ F G+G+E II L+D++K R
Sbjct: 291 -----CMAAVLFMIGRGHETLTIIDDLLDVDKTMR 320
>gi|226468594|emb|CAX69974.1| putative tRNA pseudouridine synthase 3 [Schistosoma japonicum]
Length = 388
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 23/161 (14%)
Query: 207 SPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDID 266
S +E D E+ ++ +LN NLPRDI+V+AWSPV +++ARFDC R+Y+Y+FP++GLDI+
Sbjct: 157 SERQEVPDKEMDFVSILNRNLPRDIRVLAWSPVSPEFNARFDCRRRSYEYYFPESGLDIE 216
Query: 267 AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV------------------TSA 308
+M A LVG HDFRN C + V+F R + + S
Sbjct: 217 SMIDAGNRLVGVHDFRNFCASRIEKDTVSFVREIFEVVINVVDSSDHHTKLYCLCVSASG 276
Query: 309 WQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
+ Q I ++ F G+G E P +I ++D+ K P
Sbjct: 277 FLYHQIRYIASIL-----FMVGRGYESPSVIDDMLDLTKTP 312
>gi|294901661|ref|XP_002777462.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC
50983]
gi|239885099|gb|EER09278.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC
50983]
Length = 387
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 30/178 (16%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVP-EKYSA 245
D + R TL++R K D E PY++M+N LP DI+V+ VP + + A
Sbjct: 111 DKGVHARGNYATLRLRLK-------PDGTEFPYIQMINRVLPDDIRVLRICSVPSDDFDA 163
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKR------- 298
RF C R YKY+FP GLD++ M +AAQ LVG HD+RN C+M+V NF+R
Sbjct: 164 RFSCKSRTYKYFFPSTGLDLEVMAEAAQRLVGQHDYRNFCRMDV-EQTTNFERTIYSFEI 222
Query: 299 ----LVTHAGVTSA---WQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
+++HA +T + W V+ + EV+ G+G EKPE+I L DI K P
Sbjct: 223 CNGDVISHAVITGSAFLWHQVRC--MMEVL-----MLIGKGLEKPEVIDMLFDINKTP 273
>gi|260781560|ref|XP_002585875.1| hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae]
gi|229270936|gb|EEN41886.1| hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae]
Length = 312
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 74/127 (58%), Gaps = 15/127 (11%)
Query: 196 VVTLKIRSKLTSPG-------------EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEK 242
V++L +R+ LT E E+ Y+ +LN LP DI+V+AW+PV
Sbjct: 132 VISLDLRTNLTDGAGVIPRPEGTANHREGDKTTEIKYVYILNKVLPPDIRVLAWAPVDPD 191
Query: 243 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLV-- 300
+SARF C R YKY+FP+ LDI +MH A Q LVG HDFRN CKM+V N VV F R +
Sbjct: 192 FSARFSCQQRTYKYFFPKGNLDIQSMHLAGQKLVGEHDFRNFCKMDVANRVVTFIRRIIS 251
Query: 301 THAGVTS 307
TH VT
Sbjct: 252 THVCVTG 258
>gi|384496190|gb|EIE86681.1| hypothetical protein RO3G_11392 [Rhizopus delemar RA 99-880]
Length = 450
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 94/187 (50%), Gaps = 24/187 (12%)
Query: 196 VVTLKIRSK-LTS---PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 251
V+ L +RSK LTS P + E PY+ LN LP DI+V+AW+PVPE +SAR+ C
Sbjct: 126 VIALWVRSKKLTSDPSPDLLPAEQEFPYVDTLNRMLPPDIRVLAWAPVPEDFSARYHCTS 185
Query: 252 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV--TSAW 309
R YKY+F + +DI+ M + +Y G HDFRN CKM+ + ++ R + V
Sbjct: 186 RTYKYFFSRGKMDIEKMRQGCKYFEGEHDFRNFCKMDPAKNIQSYDRHILSMTVRPVDHT 245
Query: 310 QNVQFNDIKEVVDSEPS----------------FKKGQGNEKPEIIQQLVDIEKYPRIKS 353
Q D + + E F GQG E PE I+ ++DIEK P
Sbjct: 246 QTAHIGDGTDFYEVELKGTAFLWHQVRYMMSVLFLVGQGLEPPETIRDVLDIEKVP--SK 303
Query: 354 AQFPWSS 360
FP +S
Sbjct: 304 PDFPMAS 310
>gi|268529206|ref|XP_002629729.1| C. briggsae CBR-TAG-124 protein [Caenorhabditis briggsae]
Length = 401
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 92/157 (58%), Gaps = 19/157 (12%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
+S D ELPY+KMLN LP+ I+V AW+PV ++ARFDC R YKY FP+AGLD++ M +
Sbjct: 124 KSKDEELPYIKMLNGVLPKTIRVFAWAPVAPTFNARFDCNRRTYKYSFPKAGLDLEKMRE 183
Query: 271 AAQYLVGTHDFRNLCKMNVGNGVV--NFKRLVTHAGVTSAWQNVQFNDIKEVVD---SEP 325
AA+ L+G HD+ N C++++ + ++ R + V + + NDI +V+ S
Sbjct: 184 AAKLLIGEHDYSNFCQIDMNKMRLEQSYTRKIYDVTVEQVSTHSE-NDIYSMVELTVSGS 242
Query: 326 SF-------------KKGQGNEKPEIIQQLVDIEKYP 349
F + +GNE+P ++ L+D+ KYP
Sbjct: 243 GFLWHMIRYIVTVLQEVARGNEQPSLVSDLLDLSKYP 279
>gi|448515468|ref|XP_003867346.1| Deg1 protein [Candida orthopsilosis Co 90-125]
gi|380351685|emb|CCG21908.1| Deg1 protein [Candida orthopsilosis]
Length = 468
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 97/175 (55%), Gaps = 30/175 (17%)
Query: 196 VVTLKIRSKLTSPGEE----SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDC 249
VV++K+RS L SP E+ +DD E+ YL ++N NLP DIKV + P P+ + ARF C
Sbjct: 176 VVSIKLRSNL-SPEEQQDSTNDDKEIDYLTIINANLPSDIKVHSICLHPPPD-FDARFSC 233
Query: 250 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA------ 303
R+Y+Y F + LDI+AM+KAA Y G HDFRN CK++ + NF+R + +
Sbjct: 234 KNRHYRYLFKASNLDIEAMNKAAGYYQGQHDFRNFCKLDGSKQITNFERFIYSSKIIHLE 293
Query: 304 ---------GVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
G W V+ + ++ F GQ EKPEI+ L+DI KYP
Sbjct: 294 NDLFCFDLIGTAFLWHQVRC--MVAIL-----FLVGQHLEKPEIVTDLMDITKYP 341
>gi|195122857|ref|XP_002005927.1| GI20747 [Drosophila mojavensis]
gi|193910995|gb|EDW09862.1| GI20747 [Drosophila mojavensis]
Length = 500
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 96/182 (52%), Gaps = 33/182 (18%)
Query: 196 VVTLKIRSKL---TSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLF 251
V+++ +RSK T ES + E+ Y +LN LP++I+ V+W P+ YSARFDC+
Sbjct: 165 VISINLRSKHSPDTQMKPESLNTEIDYCSLLNRVLPKNIQCVSWMPLRNPDYSARFDCIS 224
Query: 252 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV------ 305
R Y+Y+FP+ LDID+M +A Q LV DFRN CKM+V NGV N+ R + HA +
Sbjct: 225 RTYRYYFPKGDLDIDSMQQACQLLVCHGDFRNFCKMDVHNGVTNYMRNLQHAEIRPCDNT 284
Query: 306 ------------------TSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEK 347
+A+ Q I V+ GQ NE+P II +L+D+
Sbjct: 285 ERQLEQNSGYIMYYLEIKANAFLWHQIRCIMAVL-----LLVGQKNEQPSIITKLLDVGS 339
Query: 348 YP 349
P
Sbjct: 340 NP 341
>gi|145350766|ref|XP_001419769.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580001|gb|ABO98062.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 257
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 94/179 (52%), Gaps = 31/179 (17%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
+VTL+ RS G E D EL Y+ +LN LP D++ + W+PV ++ +ARFDC +R YK
Sbjct: 83 IVTLRARSN----GAEGVDEELDYVALLNRALPNDVRALGWAPVDDELNARFDCEWRQYK 138
Query: 256 YWFPQA-GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA----------- 303
Y+F + GLD+ AM +AA+ G HDFRN C+M+ N V +F R V
Sbjct: 139 YFFEKTNGLDLGAMREAARAFEGVHDFRNFCRMDAEN-VKSFTRNVLECTIEESHDGKLM 197
Query: 304 -----GVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPRIKSAQFP 357
G W V+ + F G G+E P ++ +L+D+E+ PR Q+P
Sbjct: 198 YINVRGTAFLWHQVR-------CMASVLFMVGLGHESPTVVTELLDLERTPR--KPQYP 247
>gi|449446486|ref|XP_004141002.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Cucumis
sativus]
Length = 455
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 93/182 (51%), Gaps = 33/182 (18%)
Query: 196 VVTLKIRSKLTSP---------GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
V+ L +RS L P GEE D E+ Y++++N LP DI+V+ W VP +SAR
Sbjct: 177 VIALYLRSNLKDPPNGENSCHNGEEQHDGEIDYVRVINKVLPNDIRVLGWCSVPVGFSAR 236
Query: 247 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT 306
F CL R YKY+F A L+I AM +A + VG HDFRN CKM+ N V N++R + ++
Sbjct: 237 FSCLRRKYKYFFWGANLNISAMERAGKKFVGEHDFRNFCKMDAAN-VHNYRRRIMSFDIS 295
Query: 307 ------------------SAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKY 348
SA+ Q + VV F GQ E P++I L+D +
Sbjct: 296 PCDVRTEGNPLWAFNIEGSAFLWHQVRCMVAVV-----FMVGQDLEDPDVIDILLDPLRT 350
Query: 349 PR 350
PR
Sbjct: 351 PR 352
>gi|194696534|gb|ACF82351.1| unknown [Zea mays]
Length = 257
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 82/149 (55%), Gaps = 14/149 (9%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQY 274
+E+ Y+K+LN LPRDI+V+ W PVP + ARF CL R YKY F + LDI M KAA
Sbjct: 6 SEIDYVKVLNRILPRDIRVLGWCPVPADFHARFTCLSREYKYLFWKGDLDILEMQKAASK 65
Query: 275 LVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPS-------- 326
+G HDFRN CKM+ N V N++R +T +++ + +++ + +
Sbjct: 66 FIGEHDFRNFCKMDAAN-VSNYRRHITEFTISACDRRSNNDELCSMTIKGSAFLWHQVRC 124
Query: 327 -----FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG E P ++ L+DI K R
Sbjct: 125 MVAVLFLIGQGLESPSVVDSLLDIMKTSR 153
>gi|341882334|gb|EGT38269.1| hypothetical protein CAEBREN_00927 [Caenorhabditis brenneri]
Length = 413
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 26/199 (13%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
+S ELPY+KMLN LP+ I+V AW+PV +++ARFDC R YKY F +A LD++ M +
Sbjct: 136 KSKPEELPYVKMLNGLLPKTIRVFAWAPVKREFNARFDCNRRTYKYSFAKADLDLEKMRE 195
Query: 271 AAQYLVGTHDFRNLCKMNVGNG-----------VVNFKRLVTHAG--------VTSAWQN 311
AA L+G HD+ N C+M++ V +++ TH G +T +
Sbjct: 196 AASLLIGEHDYINFCQMDLNEKRLTQATVRKIYEVKVEQVSTHPGNDIYSMVELTVSGSG 255
Query: 312 VQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPRIKSAQFPWSSTGATTPNELFR 371
++ I+ +V G+GNE+P ++ +L+D +KYP P + + TP LF
Sbjct: 256 FLWHMIRYIVTVLQEI--GRGNEQPTLVSELLDTQKYP-----GRPHYTLSSDTPLCLFD 308
Query: 372 RVFLLSFLAWVDQYRIRQT 390
+ +AW+ I++T
Sbjct: 309 CGYKEEDVAWIYDSDIKKT 327
>gi|255572341|ref|XP_002527109.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223533532|gb|EEF35272.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 438
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 97/188 (51%), Gaps = 27/188 (14%)
Query: 196 VVTLKIRSKLT-----------SPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 244
V+ L +RSK+ + ++ + E+ Y+++LN LP DI+++ W PVP +S
Sbjct: 167 VIALLLRSKVKDIDEIGKVFGETASQKHSEGEIDYVRVLNRVLPNDIRIIGWCPVPNDFS 226
Query: 245 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
ARF CL R YKY+F L++ AM A + +G HDFRN CKM+ N V N++R +T
Sbjct: 227 ARFSCLSREYKYFFRGDNLNLLAMESAGKKFIGEHDFRNFCKMDAMN-VHNYRRNITSFE 285
Query: 305 VTSAWQNVQFNDIKEVVDSEPS-------------FKKGQGNEKPEIIQQLVDIEKYPRI 351
++ + + N + + + F GQG E P++I L+D + PR
Sbjct: 286 ISPCHERYEGNQLFAIKIRGSAFLWHQVRCMVAVLFMIGQGLESPDVIDVLLDTVRTPR- 344
Query: 352 KSAQFPWS 359
Q+P +
Sbjct: 345 -KPQYPMA 351
>gi|157114473|ref|XP_001652288.1| hypothetical protein AaeL_AAEL006856 [Aedes aegypti]
gi|108877278|gb|EAT41503.1| AAEL006856-PA [Aedes aegypti]
Length = 335
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 67/104 (64%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ I E+G + ++CELA R QP++ DV++ LI +GI I GL++Y KR R +
Sbjct: 39 LTEMMQCFIVELGQTARNYCELAGRTQPVIGDVVIGLINMGISIRGLESYGKREGRHILA 98
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
+ K LSILQAG K HP HIP YLP PDPHAYIRTP
Sbjct: 99 QPQQAQSQKQLSILQAGQKHNHPSHIPNYLPSLPDPHAYIRTPT 142
>gi|312371562|gb|EFR19713.1| hypothetical protein AND_21924 [Anopheles darlingi]
Length = 321
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 69/103 (66%)
Query: 94 TSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFPP 153
T ++ + E+G + ++CELA R QP++ DV++ALI +GI + GLD +AKR R++ P
Sbjct: 40 TEMMQSFLVELGHSARNYCELAGRTQPVIGDVVVALINMGISVQGLDAFAKRDGRSILPH 99
Query: 154 VAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
+ K SILQAG K HP HIP +LP FPDPHAYIRTP
Sbjct: 100 PQQAQAQKQQSILQAGQKNSHPSHIPNHLPAFPDPHAYIRTPT 142
>gi|353229978|emb|CCD76149.1| putative pseudouridylate synthase [Schistosoma mansoni]
Length = 1030
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 17/151 (11%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQ 273
D E+ Y+ LN NLPRDI+V+AWSPV +SARF C R+Y+Y+FP++GLDI +M A
Sbjct: 741 DEEMDYVSALNRNLPRDIRVLAWSPVSPDFSARFMCCKRSYEYYFPESGLDIKSMIDAGN 800
Query: 274 YLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTS---------------AWQNVQFNDIK 318
LVG HDFRN C + V F R + V+ + ++ I+
Sbjct: 801 RLVGVHDFRNFCASRIEKDTVTFIREIFEVVVSDVDSCDHHSKLCRISISASGFLYHQIR 860
Query: 319 EVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
V+ F G+G E P ++ ++D+ K P
Sbjct: 861 FVM--SILFMVGRGYESPSVVDDMLDLSKTP 889
>gi|341879449|gb|EGT35384.1| hypothetical protein CAEBREN_20868 [Caenorhabditis brenneri]
Length = 413
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 26/199 (13%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
+S ELPY+KMLN LP+ I+V AW+PV +++ARFDC R YKY F +A LD++ M +
Sbjct: 136 KSKPEELPYVKMLNGLLPKTIRVFAWAPVKREFNARFDCNRRTYKYSFAKADLDLEKMRE 195
Query: 271 AAQYLVGTHDFRNLCKMNVGNG-----------VVNFKRLVTHAG--------VTSAWQN 311
AA L+G HD+ N C+M++ V +++ TH G +T +
Sbjct: 196 AASLLIGEHDYINFCQMDLNEKRLTQTTVRKIYEVKVEQVSTHPGNDIYSMVELTVSGSG 255
Query: 312 VQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPRIKSAQFPWSSTGATTPNELFR 371
++ I+ +V G+GNE P ++ +L+D +KYP P + + TP LF
Sbjct: 256 FLWHMIRYIVTVLQEI--GRGNEHPTLVSELLDTQKYP-----GRPHYTLSSDTPLCLFD 308
Query: 372 RVFLLSFLAWVDQYRIRQT 390
+ +AW+ I++T
Sbjct: 309 CGYKEEDVAWIYDSDIKKT 327
>gi|256087925|ref|XP_002580112.1| pseudouridylate synthase [Schistosoma mansoni]
Length = 1304
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 78/149 (52%), Gaps = 13/149 (8%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQ 273
D E+ Y+ LN NLPRDI+V+AWSPV +SARF C R+Y+Y+FP++GLDI +M A
Sbjct: 1015 DEEMDYVSALNRNLPRDIRVLAWSPVSPDFSARFMCCKRSYEYYFPESGLDIKSMIDAGN 1074
Query: 274 YLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPS------- 326
LVG HDFRN C + V F R + V+ + + + S
Sbjct: 1075 RLVGVHDFRNFCASRIEKDTVTFIREIFEVVVSDVDSCDHHSKLCRISISASGFLYHQIR 1134
Query: 327 ------FKKGQGNEKPEIIQQLVDIEKYP 349
F G+G E P ++ ++D+ K P
Sbjct: 1135 FVMSILFMVGRGYESPSVVDDMLDLSKTP 1163
>gi|50309181|ref|XP_454596.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643731|emb|CAG99683.1| KLLA0E14345p [Kluyveromyces lactis]
Length = 444
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 97/169 (57%), Gaps = 16/169 (9%)
Query: 196 VVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLF 251
V++L++RS LT+ + DD E+ Y+ +LN LP DI+V A P K + ARF C
Sbjct: 164 VISLRVRSNLTAEEQLDPSYDDKEIQYVNILNQILPEDIRVSAVCLRPPKGFDARFSCKS 223
Query: 252 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQN 311
R+YKY F GLD++ M AA++ G HDFRN CK++ + N+KR + + + ++
Sbjct: 224 RHYKYLFSSEGLDLERMQLAAKHYEGEHDFRNFCKLDGSKQITNYKRTIKSSNIMHVSED 283
Query: 312 VQ----------FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
+ ++ ++ +V + F GQG E P +I++++DIEK PR
Sbjct: 284 MYCFDLVGSAFLWHQVRCMVAN--LFLVGQGLEDPNLIKEMLDIEKMPR 330
>gi|195171697|ref|XP_002026640.1| GL11833 [Drosophila persimilis]
gi|194111566|gb|EDW33609.1| GL11833 [Drosophila persimilis]
Length = 421
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 96/175 (54%), Gaps = 23/175 (13%)
Query: 196 VVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLF 251
V+++ +RSK T + S +E+ Y +LN LP++I+ VAW P+ YSARFDC
Sbjct: 166 VISIDLRSKHTPDTQLEPASLSSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSARFDCTS 225
Query: 252 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKR------------L 299
R+Y+Y+FP+ LDI+AM +A + LVG DFRN CKM+V NGV F R +
Sbjct: 226 RSYRYYFPKGDLDIEAMREACKLLVGHSDFRNFCKMDVHNGVTKFIRNLQAARVEPCVEM 285
Query: 300 VTHAGVTSAWQNVQFN-----DIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
+ ++G + +Q N I+ ++ GQ E P I+ L+D+E P
Sbjct: 286 LNNSGYDMYYLEIQANAFLWHQIRCIM--AVLLLVGQRRELPRIVSDLLDVETNP 338
>gi|290562699|gb|ADD38745.1| tRNA pseudouridine synthase 3 [Lepeophtheirus salmonis]
Length = 420
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 29/159 (18%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWFPQAGL-DIDAMHKAA 272
+E+ Y+K++N+NLP DI+++AW+P + SARFDC R YKY+FP + + M++A
Sbjct: 153 HEIDYIKIINSNLPPDIQLIAWTPAQNRELSARFDCKKRTYKYFFPLGSIKSLSKMNEAG 212
Query: 273 QYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT----------------------SAWQ 310
LVG+HDFRN CKM+V NGV+ + R + + + +A+
Sbjct: 213 AKLVGSHDFRNFCKMDVSNGVLTYIRRMVNVSTSVLEPSKEKESSPYDLCVLKVEGNAFL 272
Query: 311 NVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
Q I V+ F GQG E+PE+I +L+DIEK P
Sbjct: 273 WHQIRCIVTVL-----FHIGQGREEPELIDELLDIEKNP 306
>gi|125811944|ref|XP_001362058.1| GA15853 [Drosophila pseudoobscura pseudoobscura]
gi|54637235|gb|EAL26638.1| GA15853 [Drosophila pseudoobscura pseudoobscura]
Length = 497
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 96/175 (54%), Gaps = 23/175 (13%)
Query: 196 VVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLF 251
V+++ +RSK T + S +E+ Y +LN LP++I+ VAW P+ YSARFDC
Sbjct: 166 VISIDLRSKHTPDTQLEPASLSSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSARFDCTS 225
Query: 252 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKR------------L 299
R+Y+Y+FP+ LDI+AM +A + LVG DFRN CKM+V NGV F R +
Sbjct: 226 RSYRYYFPKGDLDIEAMREACKLLVGHSDFRNFCKMDVHNGVTKFIRNLQAARVEPCVEM 285
Query: 300 VTHAGVTSAWQNVQFN-----DIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
+ ++G + +Q N I+ ++ GQ E P I+ L+D+E P
Sbjct: 286 LNNSGYDMYYLEIQANAFLWHQIRCIM--AVLLLVGQRRELPRIVSDLLDVETNP 338
>gi|320582058|gb|EFW96276.1| Non-essential tRNA:pseudouridine synthase [Ogataea parapolymorpha
DL-1]
Length = 404
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 97/173 (56%), Gaps = 24/173 (13%)
Query: 196 VVTLKIRSKLTS---PGEESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V++L +RS LT +D EL Y+K+LN LP DI++ + P PE + ARF CL
Sbjct: 126 VISLVVRSNLTQDEMANPLNDVKELDYVKILNKVLPEDIRIHSICLRP-PEGFDARFSCL 184
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
R+YKY+F QA L+I+ M +AA Y VG DFRN CK++ +VN+KR + ++S+ +
Sbjct: 185 SRHYKYFFEQANLNIEKMQQAASYFVGEQDFRNFCKVDGSKQIVNYKRKI----ISSSIE 240
Query: 311 NVQFNDIKEVVDSEPS--------------FKKGQGNEKPEIIQQLVDIEKYP 349
+F V S F GQ E+PEI+++L+D++ +P
Sbjct: 241 RTKFGHKTYVFSLRGSAFLWHQVRSMMSILFLVGQELEEPEIVRKLLDVKLFP 293
>gi|430813781|emb|CCJ28906.1| unnamed protein product [Pneumocystis jirovecii]
Length = 353
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 21/172 (12%)
Query: 196 VVTLKIRS-KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAW-SPVPEKYSARFDCLFRN 253
V+ L +RS K + E +E+ Y+ +LN LP+ I+++AW S +P +SARF C R+
Sbjct: 73 VMALNVRSNKPFNEDSEEKWSEIKYIDILNKLLPKTIRILAWCSDLPSDFSARFSCQKRH 132
Query: 254 YKYWF----PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW 309
YKY F P L+I+ M KAA Y +G HDFRN CK++ + NF R++T + + + +
Sbjct: 133 YKYLFFKDSPNVQLNIEKMSKAASYFIGKHDFRNFCKLDTSKQITNFTRIITRSEI-NKY 191
Query: 310 QNVQFNDIKEVVDSEPS--------------FKKGQGNEKPEIIQQLVDIEK 347
+ ND V D E + F GQ EKPEII+ L+D K
Sbjct: 192 NTAEENDSLYVFDLEGTAFLWHQVRSMIAVLFLVGQDLEKPEIIKTLLDTSK 243
>gi|17647803|ref|NP_523397.1| TBP-associated factor 8 [Drosophila melanogaster]
gi|71153581|sp|Q9VWY6.1|TAF8_DROME RecName: Full=Transcription initiation factor TFIID subunit 8;
AltName: Full=Protein prodos
gi|7293423|gb|AAF48800.1| TBP-associated factor 8 [Drosophila melanogaster]
gi|372099923|gb|AEX66194.1| FI18809p1 [Drosophila melanogaster]
Length = 328
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%)
Query: 87 NWYKRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRP 146
N +T ++ +I E+G +H++CEL+ R P + DV LALI +GI I LD Y ++
Sbjct: 37 NHSLETLTQMLQALIWEIGNSAHNYCELSGRTMPTVGDVSLALINMGISISNLDPYMRKE 96
Query: 147 MRTVFPPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
P TQ +PLS+LQAG+K PHP ++P Y P PDPHAYIRTP
Sbjct: 97 THVPIPLPPQQTQQRPLSLLQAGIKAPHPHYVPSYFPPMPDPHAYIRTPT 146
>gi|385300994|gb|EIF45229.1| putative trna pseudouridine synthase [Dekkera bruxellensis
AWRI1499]
Length = 443
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 93/172 (54%), Gaps = 22/172 (12%)
Query: 196 VVTLKIRSKLTSP--GEESDDN-ELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLF 251
V++L++RS+LT + ++DN EL Y+KMLN+ LP DI+ A P K + ARF C +
Sbjct: 153 VISLRVRSRLTKEQLKDPANDNLELDYIKMLNHVLPADIRFHAICVRPPKGFDARFSCQW 212
Query: 252 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQN 311
R YKY F GLDID M KAAQ VG HDFRN CK++ + NF R V + S Q
Sbjct: 213 RQYKYIFNSKGLDIDRMRKAAQMFVGQHDFRNFCKVDGSKQLKNFTREVYSTAIESLEQE 272
Query: 312 VQFNDIKEVVDSEPS--------------FKKGQGNEKPEIIQQLVDIEKYP 349
F+ V D + S GQ E+P I++ L++I YP
Sbjct: 273 PGFS----VFDLKGSAFLWHQVRYMVAVLLTIGQKLEEPTIVKDLLNINMYP 320
>gi|17946385|gb|AAL49226.1| RE65343p [Drosophila melanogaster]
Length = 328
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%)
Query: 87 NWYKRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRP 146
N +T ++ +I E+G +H++CEL+ R P + DV LALI +GI I LD Y ++
Sbjct: 37 NHSLETLTQMLQALIWEIGNSAHNYCELSGRTMPTVGDVSLALINMGISISNLDPYMRKE 96
Query: 147 MRTVFPPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
P TQ +PLS+LQAG+K PHP ++P Y P PDPHAYIRTP
Sbjct: 97 THVPIPLPPQQTQQRPLSLLQAGIKAPHPHYVPSYFPPMPDPHAYIRTPT 146
>gi|402588277|gb|EJW82210.1| pseudouridylate synthase [Wuchereria bancrofti]
Length = 353
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 25/168 (14%)
Query: 207 SPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDID 266
+ E + EL Y+KMLN+ LP +I+V+AW+PVP +SAR++C R Y Y FP+ +I+
Sbjct: 58 ASSETAVKGELQYVKMLNSTLPTNIRVLAWAPVPRNFSARYNCTQRTYTYAFPRNNFNIE 117
Query: 267 AMHKAAQYLVGTHDFRNLCKMNVGNGVV--NFKRLVTHAGVTSAWQN-----------VQ 313
AM +A + LVG HDFRN C++++ V N+ R +T+A ++ N +
Sbjct: 118 AMRQACRLLVGEHDFRNFCRIDMNKKRVEMNYIRTITYADISFISNNSMSSSKLSNEATR 177
Query: 314 FNDIKEVVDSEPSF------------KKGQGNEKPEIIQQLVDIEKYP 349
+ ++ + + + G GNEKP II +L+DI+ P
Sbjct: 178 YEFLQLTIKGKGFLWHQIRCIMALLCEIGLGNEKPNIITELLDIKLIP 225
>gi|2632098|emb|CAA75667.1| Prodos protein [Drosophila melanogaster]
Length = 328
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%)
Query: 87 NWYKRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRP 146
N +T ++ +I E+G +H++CEL+ R P + DV LALI +GI I LD Y ++
Sbjct: 37 NHSLETLTQMLQALIWEIGNSAHNYCELSGRTMPTVGDVSLALINMGISISNLDPYMRKE 96
Query: 147 MRTVFPPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
P TQ +PLS+LQAG+K PHP ++P Y P PDPHAYIRTP
Sbjct: 97 THVPIPLPPQQTQQRPLSLLQAGIKAPHPHYVPSYFPPMPDPHAYIRTPT 146
>gi|158300532|ref|XP_320424.4| AGAP012105-PA [Anopheles gambiae str. PEST]
gi|157013204|gb|EAA00622.4| AGAP012105-PA [Anopheles gambiae str. PEST]
Length = 220
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 71/103 (68%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ + E+G + ++CELA R QP++ DV++AL+ +GI I GLDT+AKR R V P
Sbjct: 39 LTEMMQSFLVELGHSARNYCELAGRTQPVIGDVVVALVNMGISIRGLDTFAKREGRHVLP 98
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTP 195
+ K SILQAG K PHP +IP +LP FPDPHAYIRTP
Sbjct: 99 QPQQAQAQKQQSILQAGQKIPHPSYIPSHLPQFPDPHAYIRTP 141
>gi|344228480|gb|EGV60366.1| hypothetical protein CANTEDRAFT_127546 [Candida tenuis ATCC 10573]
Length = 415
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 96/173 (55%), Gaps = 26/173 (15%)
Query: 196 VVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLF 251
V++L++RS + ++ +DD E+PY+ +LN+ LP DI+V A S P K+ ARF C +
Sbjct: 120 VISLRVRSDFSPEDQQLQSNDDKEIPYIFILNSILPPDIRVTAISLRPPPKFDARFSCEY 179
Query: 252 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA-------- 303
R+Y+Y + GLD+D + AA G+HDFRN CK++ + N++R + H+
Sbjct: 180 RHYRYLIAKEGLDLDLLQAAAAKYKGSHDFRNFCKIDGSKQITNYRREIYHSQIIPWDDE 239
Query: 304 -------GVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
G W V++ + V+ S GQG+E+ +I L D+EKYP
Sbjct: 240 FVMLDLKGSAFLWHQVRY--MVAVILS-----IGQGHEQMSLIDNLFDVEKYP 285
>gi|290984657|ref|XP_002675043.1| predicted protein [Naegleria gruberi]
gi|284088637|gb|EFC42299.1| predicted protein [Naegleria gruberi]
Length = 430
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 21/149 (14%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGT 278
Y++++N+ LP DI+V+AW PV + + ARF CL R YKY+F + L+I+ M +AA + VG
Sbjct: 146 YVRLINSLLPDDIRVLAWCPVSKDFDARFGCLQRTYKYYFIRQNLNIEKMKQAAAHFVGE 205
Query: 279 HDFRNLCKMNVGNGVVNFKRLVTHAGVTSA------WQNVQFNDIKEVVDSEPS------ 326
HDFRN CK+N V NF+R + + + N ++ +I E+V S
Sbjct: 206 HDFRNFCKIN--EEVTNFRRRILSMEIIKSDLLHQQHGNDEYFEIYEIVVCGTSFLWHQV 263
Query: 327 -------FKKGQGNEKPEIIQQLVDIEKY 348
F G+G E+P +I +L+DIEKY
Sbjct: 264 RCMTAILFLIGEGKEEPSVIPELLDIEKY 292
>gi|169854752|ref|XP_001834048.1| pseudouridine synthase [Coprinopsis cinerea okayama7#130]
gi|116504845|gb|EAU87740.1| pseudouridine synthase [Coprinopsis cinerea okayama7#130]
Length = 511
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 81/146 (55%), Gaps = 12/146 (8%)
Query: 210 EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMH 269
E NE Y+ +LN LP I+V AWSPVP +SARF C FR+YKY+F GLDI M
Sbjct: 191 EPQSRNEHDYVSILNRLLPETIRVSAWSPVPSTFSARFSCNFRHYKYFFTPKGLDIVRMQ 250
Query: 270 KAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ----------FNDIKE 319
+AA L+G HDFRNLCK++ + +FKR V A + N+ ++ ++
Sbjct: 251 EAAGRLIGEHDFRNLCKLDPAKQITSFKRKVMSAHIERLNDNLHVFNLTGSAFLYHQVRH 310
Query: 320 VVDSEPSFKKGQGNEKPEIIQQLVDI 345
++ F G G E P ++ L+++
Sbjct: 311 IMAI--LFLIGMGMESPSLVSNLLNV 334
>gi|195552156|ref|XP_002076382.1| GD15210 [Drosophila simulans]
gi|194202031|gb|EDX15607.1| GD15210 [Drosophila simulans]
Length = 498
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 96/177 (54%), Gaps = 27/177 (15%)
Query: 196 VVTLKIRSKLTSPGEESDD-----NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDC 249
V+++ +RSK P E D +E+ Y +LN LP++I+ VAW P+ YSARFDC
Sbjct: 163 VISIDLRSK--HPPESQLDPTSLSSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSARFDC 220
Query: 250 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW 309
+ R+Y+Y+FP+ LDI AM KA LV DFRN CKM+V NGV N+ R + A V +
Sbjct: 221 VSRSYRYYFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARVEACD 280
Query: 310 QN------------VQFN-----DIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
+N +Q N I+ ++ GQ EKP +I L+D+E P
Sbjct: 281 ENHTNSGYDMYYLEIQANAFLWHQIRCIM--AVLLLVGQKKEKPAVISDLLDVESNP 335
>gi|397630300|gb|EJK69716.1| hypothetical protein THAOC_09000 [Thalassiosira oceanica]
Length = 617
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQY 274
+E Y K+LNN LP I+V+ W PV K+SARF C R Y+Y+FP+ L++DA+ + +Y
Sbjct: 249 SEYDYAKVLNNVLPSSIRVIGWCPVSPKFSARFSCSRRTYRYFFPRRDLNLDALAQGLKY 308
Query: 275 LVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTS 307
++G HDFRNLCKMN V NF+R++T V S
Sbjct: 309 MIGRHDFRNLCKMNC-EQVYNFERVITSGDVVS 340
>gi|390365271|ref|XP_794710.3| PREDICTED: tRNA pseudouridine(38/39) synthase-like
[Strongylocentrotus purpuratus]
Length = 282
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 61/90 (67%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E+ Y MLN LP +I+V+AW+P + ARFD L R YKY+FP LD M++A+Q L
Sbjct: 168 EINYPLMLNRVLPSEIRVIAWTPAEPSFHARFDTLHRTYKYFFPAGDLDTKLMNEASQKL 227
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
VGT DFRN CKM+VGNGVV F R + A +
Sbjct: 228 VGTFDFRNFCKMDVGNGVVKFVRTIRSAEI 257
>gi|10086461|gb|AAG12521.1|AC015446_2 Putative pseudouridine synthase [Arabidopsis thaliana]
Length = 442
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 94/194 (48%), Gaps = 30/194 (15%)
Query: 180 PYLPLFPDPHAYIRTPVVTLKIRSKLTSP---------GEESDDNELPYLKMLNNNLPRD 230
P + FP+ + V+ L +RS+L SP G + E Y+++LN LP D
Sbjct: 169 PVMGAFPNVYK-----VIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRALPDD 223
Query: 231 IKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
I+V+ WSP P + ARF C R YKY+F + L++ AM A + +G HDFRN CKM+V
Sbjct: 224 IRVIGWSPAPIDFHARFSCYAREYKYFFWRQNLNLSAMDFAGKKFIGEHDFRNFCKMDVA 283
Query: 291 NGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPS--------------FKKGQGNEKP 336
N V + R VT V S QN D S F GQG E
Sbjct: 284 N-VHCYTRRVTFFEV-SPCQNSHEGDQLCTFTMRGSAFLWHQIRCMVAVLFMIGQGVESV 341
Query: 337 EIIQQLVDIEKYPR 350
++I L+D +K PR
Sbjct: 342 DVIDTLLDTKKTPR 355
>gi|195345371|ref|XP_002039243.1| GM22880 [Drosophila sechellia]
gi|194134469|gb|EDW55985.1| GM22880 [Drosophila sechellia]
Length = 330
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 68/110 (61%)
Query: 87 NWYKRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRP 146
N +T ++ ++ E+G +H++CEL+ R P + DV LALI +GI I LD Y ++
Sbjct: 37 NQSLETLTQMLQALLWEIGNSAHNYCELSGRTMPTVGDVSLALINMGISISNLDPYMRKE 96
Query: 147 MRTVFPPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
P TQ +PLS+LQAG+K PHP ++P Y P PDPHAYIRTP
Sbjct: 97 THVPIPLPPQQTQQRPLSLLQAGIKAPHPHYVPSYFPPMPDPHAYIRTPT 146
>gi|392587350|gb|EIW76684.1| pseudouridine synthase, partial [Coniophora puteana RWD-64-598 SS2]
Length = 493
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLV 276
L Y+ MLN LP ++V+AWSPV +SARF+C R+YKY+FP LDI M +AA YLV
Sbjct: 190 LRYVTMLNRVLPPTVRVLAWSPVEPTFSARFNCRHRHYKYFFPSRELDISLMQQAADYLV 249
Query: 277 GTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPSFKK------- 329
G HDFRN+CK++ + NFKR + A + + Q + +V S + +
Sbjct: 250 GEHDFRNMCKLDPSKQITNFKRRILKAQIEAVGQENSNMYVFNLVGSAFLYHQVRHIMAI 309
Query: 330 ----GQGNEKPEIIQQLVDIE 346
G G E P ++ L++ +
Sbjct: 310 LFLVGTGLEPPSVVLSLINTD 330
>gi|134056983|emb|CAK44330.1| unnamed protein product [Aspergillus niger]
Length = 517
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 92/175 (52%), Gaps = 41/175 (23%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVP-EKYSARFDCLFRNYKYWFPQ------------- 260
NELPY+ MLN LP DI+V+AW P P E + ARF C R+YKY+F Q
Sbjct: 185 NELPYVSMLNKVLPEDIRVLAWCPRPPEGFDARFSCGERHYKYFFTQPAFSPTPGASGFV 244
Query: 261 -------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLV---THAG 304
LDI+AM KAA+Y GTHDFRN CK++V + +F R + + A
Sbjct: 245 PRDGTGKPPKLREGWLDIEAMRKAAKYFEGTHDFRNFCKLDVTKQIESFYRDIFQSSAAP 304
Query: 305 VTSAWQNVQF---------NDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
+ +A Q F + ++ +V+ F GQG E+P I+Q L+D+ K PR
Sbjct: 305 LPTAAQVYVFHLEGSAFLWHQVRHMVNV--LFLVGQGLEEPSIVQDLLDVTKNPR 357
>gi|19922728|ref|NP_611646.1| CG3045 [Drosophila melanogaster]
gi|7291383|gb|AAF46811.1| CG3045 [Drosophila melanogaster]
gi|16182987|gb|AAL13605.1| GH14326p [Drosophila melanogaster]
gi|220945178|gb|ACL85132.1| CG3045-PA [synthetic construct]
gi|220955082|gb|ACL90084.1| CG3045-PA [synthetic construct]
Length = 499
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 90/176 (51%), Gaps = 24/176 (13%)
Query: 196 VVTLKIRSKLTSPGEESDD-----NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDC 249
V+++ +RSK P E D +E+ Y +LN LP++I+ VAW P+ YSARFDC
Sbjct: 163 VISIDLRSK--HPPESQLDPTALSSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSARFDC 220
Query: 250 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW 309
+ R Y+Y+FP+ LDI AM KA LV DFRN CKM+V NGV N+ R + A V +
Sbjct: 221 VSRTYRYYFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARVEACD 280
Query: 310 QNVQFNDIKEVVDSEPSFKK----------------GQGNEKPEIIQQLVDIEKYP 349
Q N ++ E GQ E P +I L+D+E P
Sbjct: 281 QTNHTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKENPGVISDLLDVESNP 336
>gi|242215757|ref|XP_002473691.1| predicted protein [Postia placenta Mad-698-R]
gi|220727176|gb|EED81103.1| predicted protein [Postia placenta Mad-698-R]
Length = 495
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 17/161 (10%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDA 267
P NEL Y+ +LNN LP I+V+AWSPV +SARF C +R+YKY+F GLD+ A
Sbjct: 168 PATPQATNELRYITLLNNVLPPTIRVIAWSPVGPDFSARFSCRYRHYKYFFSPEGLDLAA 227
Query: 268 MHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQN--------------VQ 313
M AA LVG HDFRNLCK++ + F R + A + A +
Sbjct: 228 MQDAADRLVGEHDFRNLCKLDPSKQLTTFARKILSARLNPAQADGASTLYVLDLIGTAFL 287
Query: 314 FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIE-KYPRIKS 353
+N ++ ++ F G E P +I L++++ PR S
Sbjct: 288 YNQVRHIMAV--LFLVGTKLEHPSVIDALLNVDAAQPRAPS 326
>gi|395326839|gb|EJF59244.1| tRNA pseudouridine synthase [Dichomitus squalens LYAD-421 SS1]
Length = 516
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 13/142 (9%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E PY+ LN+ LP I+V+AWSPV + +SARF C +R+YKY+F +GLD+ AM AA L
Sbjct: 207 EFPYVFALNHILPPTIRVLAWSPVADDFSARFSCRWRHYKYFFSPSGLDLAAMQDAASRL 266
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQN-----------VQFNDIKEVVDSE 324
+G HDFRNLCK++ + F R + HA + A + +N ++ ++
Sbjct: 267 LGEHDFRNLCKIDASKQITVFTRRILHASIDRADKGELYVFNLRGNAFLYNMVRHIMAI- 325
Query: 325 PSFKKGQGNEKPEIIQQLVDIE 346
F G G E+P I+ L++ +
Sbjct: 326 -LFLVGSGLERPSIMSALLNAD 346
>gi|255088059|ref|XP_002505952.1| predicted protein [Micromonas sp. RCC299]
gi|226521223|gb|ACO67210.1| predicted protein [Micromonas sp. RCC299]
Length = 290
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 91/163 (55%), Gaps = 23/163 (14%)
Query: 205 LTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ-AGL 263
L+ G + +E+ Y +LN LPRDI+++ W+ VP +SARFDC +R+YKY+F GL
Sbjct: 104 LSETGRLHEGDEIDYPAVLNRALPRDIRILGWTYVPPAFSARFDCDYRHYKYFFTDWNGL 163
Query: 264 DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFK------RLVTHAG----------VTS 307
D+ AM++AA VG HDFRN CKM+ N V N++ R+V AG V +
Sbjct: 164 DVRAMNEAASAFVGEHDFRNFCKMDARN-VHNYRRRIDSCRVVLAAGEPPGVAHIEVVGT 222
Query: 308 AWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
A+ Q I V+ F G G E P ++ ++D+ + PR
Sbjct: 223 AFLWHQVRCIASVL-----FLVGLGREPPGVVAHMLDLARCPR 260
>gi|297846396|ref|XP_002891079.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp.
lyrata]
gi|297336921|gb|EFH67338.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp.
lyrata]
Length = 443
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 89/178 (50%), Gaps = 25/178 (14%)
Query: 196 VVTLKIRSKLTSP---------GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
V+ L +RS+L SP G+ + E Y+++LN LP DI+V+ WSP P + AR
Sbjct: 155 VIALFLRSRLKSPPGDSKAQVNGKTGERPEYDYVRVLNRALPDDIRVIGWSPAPVDFHAR 214
Query: 247 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT 306
F C R YKY+F + L++ AM A + +G HDFRN CKM+V N V + R VT V
Sbjct: 215 FSCYAREYKYFFWRQNLNLSAMDIAGKKFIGEHDFRNFCKMDVAN-VHCYTRRVTFFEV- 272
Query: 307 SAWQNVQFNDIKEVVDSEPS--------------FKKGQGNEKPEIIQQLVDIEKYPR 350
S QN D S F GQG E ++I L+D +K PR
Sbjct: 273 SPCQNSHEGDQLCTFTMRGSAFLWHQIRCMVAVLFMIGQGVESVDVIDTLLDTKKTPR 330
>gi|195346649|ref|XP_002039870.1| GM15659 [Drosophila sechellia]
gi|194135219|gb|EDW56735.1| GM15659 [Drosophila sechellia]
Length = 498
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 96/175 (54%), Gaps = 23/175 (13%)
Query: 196 VVTLKIRSKLTSPGEESDD-----NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDC 249
V+++ +RSK P E D +E+ Y +LN LP++I+ VAW P+ YSARFDC
Sbjct: 163 VISIDLRSK--HPPESQLDPTSLSSEIDYCGLLNRVLPKNIQCVAWMPLRSSVYSARFDC 220
Query: 250 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV---- 305
+ R+Y+Y+FP+ LDI AM KA LV DFRN CKM+V NGV N+ R + A V
Sbjct: 221 VSRSYRYFFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARVEACD 280
Query: 306 ---TSAWQNVQFNDIKEVVDSEPSFK--------KGQGNEKPEIIQQLVDIEKYP 349
T++ ++ + +I+ + GQ EKP II L+++E P
Sbjct: 281 ENHTNSGYDMYYLEIRANAFLWHQIRCIMAVLILVGQKKEKPAIISDLLNVESNP 335
>gi|195429481|ref|XP_002062787.1| GK19511 [Drosophila willistoni]
gi|194158872|gb|EDW73773.1| GK19511 [Drosophila willistoni]
Length = 495
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 74/116 (63%), Gaps = 8/116 (6%)
Query: 196 VVTLKIRSKLTSPGEESDD-----NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDC 249
V+++ +RSK P E D E+ Y +LN LP++I+ VAW P+ YSARFDC
Sbjct: 171 VISIDLRSKY--PAESQLDPTSLATEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSARFDC 228
Query: 250 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
+ R+Y+Y+FP+ LDI+AM +A Q LV DFRN CKM+V NGV +F R + A V
Sbjct: 229 IARSYRYYFPKGDLDIEAMQEACQLLVNHADFRNFCKMDVHNGVTSFMRNLQAARV 284
>gi|195130195|ref|XP_002009538.1| GI15178 [Drosophila mojavensis]
gi|193907988|gb|EDW06855.1| GI15178 [Drosophila mojavensis]
Length = 331
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 68/110 (61%)
Query: 87 NWYKRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRP 146
N +T ++ ++ EVG +H +CEL R P + DV LALI +GI I L++YA+R
Sbjct: 38 NQCLETLTQMLQALLFEVGNSAHSYCELGGRTMPTVGDVSLALINMGINISSLESYARRV 97
Query: 147 MRTVFPPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
T P TQ + LS+LQAG K PHP ++P YLP PDPHAYIRTP
Sbjct: 98 NHTPIPLPPQQTQQRQLSLLQAGNKAPHPHYVPSYLPPMPDPHAYIRTPT 147
>gi|170036671|ref|XP_001846186.1| transcription initiation factor TFIID subunit 8 [Culex
quinquefasciatus]
gi|167879499|gb|EDS42882.1| transcription initiation factor TFIID subunit 8 [Culex
quinquefasciatus]
Length = 333
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 65/97 (67%)
Query: 100 VIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFPPVAPSTQ 159
++ E+G S ++CELA R QP++ D++++LI +GI I GL+ Y KR R + P +
Sbjct: 45 IMVELGQSSRNYCELAGRTQPVIGDIVISLINMGISIKGLEAYGKRESRRILPQPQQAQA 104
Query: 160 PKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
K LSILQAG K HP HIP +LP PDPHAYIRTP
Sbjct: 105 QKQLSILQAGQKHNHPSHIPNHLPTLPDPHAYIRTPT 141
>gi|170583043|ref|XP_001896407.1| tRNA pseudouridine synthase family protein [Brugia malayi]
gi|158596407|gb|EDP34752.1| tRNA pseudouridine synthase family protein [Brugia malayi]
Length = 234
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
Query: 207 SPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDID 266
+ E + EL Y+KMLN+ LP +I+V+AW+PVP +SAR++C R Y Y FP+ +I+
Sbjct: 117 ASSETAMKGELQYVKMLNSTLPTNIRVLAWAPVPRNFSARYNCTQRTYTYAFPRTNFNIE 176
Query: 267 AMHKAAQYLVGTHDFRNLCKMNVGNGVV--NFKRLVTHAGVT 306
AM +A Q+LVG HDFRN C++++ V N+ R +T+A ++
Sbjct: 177 AMRQACQFLVGEHDFRNFCRIDMNKKRVEMNYIRTITYADIS 218
>gi|18399149|ref|NP_564438.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|13430550|gb|AAK25897.1|AF360187_1 unknown protein [Arabidopsis thaliana]
gi|14532756|gb|AAK64079.1| unknown protein [Arabidopsis thaliana]
gi|332193556|gb|AEE31677.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 446
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 88/178 (49%), Gaps = 25/178 (14%)
Query: 196 VVTLKIRSKLTSP---------GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
V+ L +RS+L SP G + E Y+++LN LP DI+V+ WSP P + AR
Sbjct: 155 VIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRALPDDIRVIGWSPAPIDFHAR 214
Query: 247 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT 306
F C R YKY+F + L++ AM A + +G HDFRN CKM+V N V + R VT V
Sbjct: 215 FSCYAREYKYFFWRQNLNLSAMDFAGKKFIGEHDFRNFCKMDVAN-VHCYTRRVTFFEV- 272
Query: 307 SAWQNVQFNDIKEVVDSEPS--------------FKKGQGNEKPEIIQQLVDIEKYPR 350
S QN D S F GQG E ++I L+D +K PR
Sbjct: 273 SPCQNSHEGDQLCTFTMRGSAFLWHQIRCMVAVLFMIGQGVESVDVIDTLLDTKKTPR 330
>gi|195488597|ref|XP_002092382.1| GE11697 [Drosophila yakuba]
gi|194178483|gb|EDW92094.1| GE11697 [Drosophila yakuba]
Length = 497
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 95/177 (53%), Gaps = 27/177 (15%)
Query: 196 VVTLKIRSKLTSPGEESDD-----NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDC 249
V+++ +RSK P E D E+ Y +LN LP++I+ VAW P+ YSARFDC
Sbjct: 162 VISIDLRSK--HPPESQLDPTAISTEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSARFDC 219
Query: 250 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW 309
+ R+Y+Y+FP+ LDI AM KA LV DFRN CKM+V NGV N+ R + A V +
Sbjct: 220 VSRSYRYYFPKGDLDIAAMSKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARVEACD 279
Query: 310 QN------------VQFN-----DIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
+N +Q N I+ ++ GQ E P +I +L+D+E P
Sbjct: 280 ENHTNSGYDMYYLEIQANAFLWHQIRCIM--AVLLLVGQKKENPAVISKLLDVESNP 334
>gi|302676700|ref|XP_003028033.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8]
gi|300101721|gb|EFI93130.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8]
Length = 455
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 75/116 (64%), Gaps = 7/116 (6%)
Query: 196 VVTLKIRSKLTSPGEE-----SDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 250
V++L +RS L+ EE + E P++ M+N +LP IK++AWSPV +S+R+ C
Sbjct: 148 VISLWVRSALSQ--EELTPTATPTEEHPFIYMINRHLPDTIKILAWSPVDPSFSSRYSCT 205
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT 306
+R+YKY+F GLD+ AM A YL GTHDFRNLCK++ + F+R + HA ++
Sbjct: 206 WRHYKYFFSPVGLDVAAMRAACAYLPGTHDFRNLCKIDPTKQLDQFRRDILHASIS 261
>gi|49899182|gb|AAH75766.1| Zgc:56653 protein [Danio rerio]
Length = 386
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
Query: 209 GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAM 268
G+ S D ELPY+K+LN LP+DI+++ W+PV +SARFDC R Y+Y+FP+ LD++ M
Sbjct: 148 GKTSAD-ELPYVKILNRVLPQDIRILQWAPVESGFSARFDCQSRTYRYYFPRGDLDLELM 206
Query: 269 HKAAQYLVGTHDFRNLCKMNV 289
+AA+ GTHDFRNLCKM+V
Sbjct: 207 AEAAKRYEGTHDFRNLCKMDV 227
>gi|194755854|ref|XP_001960194.1| GF13245 [Drosophila ananassae]
gi|190621492|gb|EDV37016.1| GF13245 [Drosophila ananassae]
Length = 492
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 95/177 (53%), Gaps = 27/177 (15%)
Query: 196 VVTLKIRSKLTSPGEESDD-----NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDC 249
V+++ +RSK P E D +E+ Y +LN LP++I+ VAW P+ YSARFDC
Sbjct: 162 VISIDLRSK--HPPESQLDATSISSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSARFDC 219
Query: 250 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKR----------- 298
+ R Y+Y+FP+ LDI AM +A +LV DFRN CKM+V NGV N+ R
Sbjct: 220 VARTYRYYFPKGDLDIPAMQEACNHLVRHADFRNFCKMDVHNGVTNYTRNLQSARVEACE 279
Query: 299 -LVTHAGVTSAWQNVQFN-----DIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
+T +G + +Q N I+ ++ GQ EKP ++ L+D+E P
Sbjct: 280 ETLTDSGYDMYYLEIQANAFLWHQIRCIM--AVLILVGQKKEKPSVVTDLLDVEVNP 334
>gi|294656526|ref|XP_458796.2| DEHA2D07722p [Debaryomyces hansenii CBS767]
gi|199431537|emb|CAG86940.2| DEHA2D07722p [Debaryomyces hansenii CBS767]
Length = 444
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 196 VVTLKIRSKLTSPGEES---DDNELPYLKMLNNNLPRDIKVVA--WSPVPEKYSARFDCL 250
V++L +RS L + S DD ELPYL +LN+ LP DI++ A P P K+ ARF C
Sbjct: 152 VISLDVRSNLIPEDQLSSSNDDKELPYLAILNSLLPTDIRITAVCLRP-PPKFDARFSCS 210
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
+R+Y+Y F + LD+D M + A+ G DFRN CK++ + N+KR V A +
Sbjct: 211 YRHYRYIFRKYDLDLDLMQEGAKRYEGVRDFRNFCKIDGSKQITNYKREVLSANIIHLRD 270
Query: 311 NVQFNDIKEVV--------DSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
+ D+K F GQ E P II LVD+EK+P
Sbjct: 271 DFYIFDLKGSAFLWHQVRCMMAVLFAVGQKLEAPSIIDDLVDVEKFP 317
>gi|302789057|ref|XP_002976297.1| hypothetical protein SELMODRAFT_105100 [Selaginella moellendorffii]
gi|300155927|gb|EFJ22557.1| hypothetical protein SELMODRAFT_105100 [Selaginella moellendorffii]
Length = 175
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 80/150 (53%), Gaps = 23/150 (15%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E+ Y+ LN LP DI+V+ W PVP + ARF CL+R YKY+F GL+IDAM +A+Q L
Sbjct: 1 EIDYVSSLNRALPADIRVLGWCPVPPGFHARFSCLYREYKYFFIDDGLNIDAMKQASQRL 60
Query: 276 VGTHDFRNLCKMNVGNGVVNFKR--------------LVTHA-GVTSAWQNVQFNDIKEV 320
+G HDFRN CKM+ N + N+ R V H G W V+
Sbjct: 61 LGEHDFRNFCKMDADN-IHNYTRQILAFDILPIEECLWVMHVRGNAFLWHQVR------- 112
Query: 321 VDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
+ F G+G+E II L+D++K R
Sbjct: 113 CMAAVLFMIGRGHETLTIIDDLLDVDKTMR 142
>gi|71985046|ref|NP_496062.3| Protein TAG-124 [Caenorhabditis elegans]
gi|1353139|sp|Q09524.1|TG124_CAEEL RecName: Full=Probable tRNA pseudouridine synthase tag-124;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|3875428|emb|CAA87378.1| Protein TAG-124 [Caenorhabditis elegans]
Length = 402
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 103/194 (53%), Gaps = 25/194 (12%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
ELPY+KMLN LP+ I+V AW+PV + ++ARFDC R YKY F +A L+++ M + A+ L
Sbjct: 129 ELPYVKMLNGVLPKTIRVFAWAPVAQTFNARFDCNRRTYKYSFAKADLNLEKMRQGAELL 188
Query: 276 VGTHDFRNLCK--MNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVD---SEPSF--- 327
VG HDF N C+ MN + ++ R V V + + ND+ +V+ S F
Sbjct: 189 VGEHDFSNFCQIDMNEKRLLQSYVRKVYEVKVEQVSTHPE-NDMYSMVELTVSGSGFLWH 247
Query: 328 ----------KKGQGNEKPEIIQQLVDIEKYPRIKSAQFPWSSTGATTPNELFRRVFLLS 377
+ G+ NE+P +I QL+D++KYP P + + TP LF +
Sbjct: 248 MIRYIVTILQEIGRENEQPSLISQLLDLKKYP-----SRPQYTLASDTPLCLFDCGYKSE 302
Query: 378 FLAW-VDQYRIRQT 390
+ W V Y ++ T
Sbjct: 303 DVEWKVHDYTLKST 316
>gi|170036669|ref|XP_001846185.1| transcription initiation factor TFIID subunit 8 [Culex
quinquefasciatus]
gi|167879498|gb|EDS42881.1| transcription initiation factor TFIID subunit 8 [Culex
quinquefasciatus]
Length = 204
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 68/103 (66%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ + E+G S ++CELA R QP++ D++++LI +GI I GL+ Y KR R + P
Sbjct: 39 LTEMLQSFMVELGQSSRNYCELAGRTQPVIGDIVISLINMGISIKGLEAYGKRESRRILP 98
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTP 195
+ K LSILQAG K HP HIP +LP PDPHAYIRTP
Sbjct: 99 QPQQAQAQKQLSILQAGQKHNHPSHIPNHLPTLPDPHAYIRTP 141
>gi|449304607|gb|EMD00614.1| hypothetical protein BAUCODRAFT_175867 [Baudoinia compniacensis
UAMH 10762]
Length = 607
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 96/189 (50%), Gaps = 55/189 (29%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF----------PQAG- 262
+ELPY+++LN+ LP DI+V+AW P P +SARF C R Y+Y+F P++G
Sbjct: 240 DELPYMQLLNHVLPTDIRVLAWCPHPPPNFSARFSCKERRYRYFFTNPAYATPPGPKSGE 299
Query: 263 --LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ---------- 310
LDI+AM KAA+ L G HDFRNLCK++ + NF+R V HA + +
Sbjct: 300 GWLDIEAMRKAARKLEGLHDFRNLCKVDPSKQITNFERRVFHADIHAVSSPRLPDSHLAL 359
Query: 311 ------NVQFNDIKEVVDSEPS-----------------------FKKGQGNEKPEIIQQ 341
N + I ++ SEP+ F GQG E+P +I
Sbjct: 360 SNGDLLNGEMPPIAKL--SEPALYYFEVRGSAFLWHQVRHLVAVLFLVGQGYEQPSLIDH 417
Query: 342 LVDIEKYPR 350
L+DIE +PR
Sbjct: 418 LLDIEGHPR 426
>gi|345482283|ref|XP_001607951.2| PREDICTED: transcription initiation factor TFIID subunit 8 [Nasonia
vitripennis]
Length = 289
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 74/104 (71%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ ++ E+G + ++CEL+ R + ++AD++LAL+ GI + + +Y+ RP R+V P
Sbjct: 37 LTEMLQSLLCEIGESARNYCELSGRTEILIADIVLALVNNGIKLDNIHSYSLRPNRSVLP 96
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
+ TQ K L+ILQAGVKQ HPPHIP +LP PDPHAYIRTP
Sbjct: 97 SLQQQTQTKQLNILQAGVKQNHPPHIPNHLPQMPDPHAYIRTPT 140
>gi|359495192|ref|XP_002264487.2| PREDICTED: uncharacterized protein LOC100244254 [Vitis vinifera]
Length = 1576
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 27/182 (14%)
Query: 182 LPLFPDPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPE 241
+P +P H+ R P + K + E+ Y+++LN LP+DI+V+ W PVP
Sbjct: 1303 IPNWPHDHSVERKPKLVNK-------------EGEIDYMRVLNRVLPKDIRVMGWCPVPI 1349
Query: 242 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVT 301
+ ARF CL R YKY+F + L+I AM A + VG HDFRN CKM+ N V N++R +
Sbjct: 1350 GFHARFSCLSREYKYFFWRGNLNILAMESAGKKFVGEHDFRNFCKMDAVN-VHNYRRHII 1408
Query: 302 HAGVTSAWQNVQFNDIKEVVDSEPS-------------FKKGQGNEKPEIIQQLVDIEKY 348
+ N + + + F GQG E P+++ L+D E+
Sbjct: 1409 SFEIAPTNNRYDGNQLWAIKIKGSAFLWHQVRCMVAVLFMIGQGLESPDVVDALLDTERT 1468
Query: 349 PR 350
R
Sbjct: 1469 SR 1470
>gi|345563397|gb|EGX46398.1| hypothetical protein AOL_s00109g156 [Arthrobotrys oligospora ATCC
24927]
Length = 574
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 89/178 (50%), Gaps = 41/178 (23%)
Query: 213 DDNELPYLKMLNNNLPRDIKVVAWSPVP-EKYSARFDCLFRNYKYWF-----------PQ 260
D +ELPY+ +LN LP I+V+AW P P E +SARF+C R Y Y+F P
Sbjct: 224 DKDELPYVTILNRLLPSTIRVLAWCPNPPENFSARFNCQARTYHYFFTNPPAPHNPGEPP 283
Query: 261 AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA------GVTSAWQNVQF 314
LDIDAM AA+Y G HDFRNLCK++ + NFKR V A GVT A+
Sbjct: 284 RVLDIDAMKTAAKYYEGPHDFRNLCKIDASKQITNFKRRVEEADIVKVGGVTPAFSLEPC 343
Query: 315 NDIKEVVDSEPS-----------------------FKKGQGNEKPEIIQQLVDIEKYP 349
+ +++ P F GQ EKP+++++L+D++ P
Sbjct: 344 ETSQRMLERRPEMYYFKLTGSAFLWHQVRHMVAILFLVGQKLEKPDVVKELLDVQNMP 401
>gi|336366370|gb|EGN94717.1| hypothetical protein SERLA73DRAFT_114183 [Serpula lacrymans var.
lacrymans S7.3]
Length = 464
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 83/156 (53%), Gaps = 18/156 (11%)
Query: 205 LTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLD 264
+ P E +EL Y+ +LN LP I+V+AWSP+ +SARF+C R+YKY+F LD
Sbjct: 134 MRQPSREETRSELRYVSILNRVLPPTIRVLAWSPISSTFSARFNCQSRHYKYFFSPQELD 193
Query: 265 IDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT-------------SAWQN 311
+ M +AA LVG HDFRNLCK++ + NF R V A ++ +A+
Sbjct: 194 LGLMQQAADRLVGEHDFRNLCKLDPAKQITNFNRRVLLAKISPISDHLCVFDLRGTAFLY 253
Query: 312 VQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEK 347
Q I ++ F G G E P I+ L+++ K
Sbjct: 254 HQVRHIMAIL-----FLVGTGLEHPSIVSTLLNVGK 284
>gi|302309334|ref|NP_986663.2| AGL003Wp [Ashbya gossypii ATCC 10895]
gi|299788309|gb|AAS54487.2| AGL003Wp [Ashbya gossypii ATCC 10895]
gi|374109914|gb|AEY98819.1| FAGL003Wp [Ashbya gossypii FDAG1]
Length = 432
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 107/229 (46%), Gaps = 36/229 (15%)
Query: 151 FPPVAPSTQPKPL-----SILQAGVKQPHPPHIPPYLPLFP-----DPHAYIRTPVVTLK 200
+ +A P PL +IL+A K P + P F D V++L+
Sbjct: 95 YNGLAIQKDPTPLPTVEGTILEAMNKCRMVPSMVPQDYKFSRCGRTDKGVSAMNQVISLR 154
Query: 201 IRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKY 256
+RS LT +E +D E+PY+ +LN LP DI++ A P K + ARF C +R+YKY
Sbjct: 155 VRSNLTPQEQEDPANDAREIPYIHILNQLLPDDIRISAICLRPPKGFDARFSCKYRHYKY 214
Query: 257 WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA------------- 303
F ++GLD+ M +AA+ G HDFRN CK++ + NFKR + A
Sbjct: 215 LFNKSGLDLSKMEEAARLYEGEHDFRNFCKLDGSKQITNFKRTILSAKILHVDGDMYCFD 274
Query: 304 --GVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
G W V+ F GQG E +I L+D+EK P+
Sbjct: 275 LLGSAFLWHQVR-------CMMANLFIVGQGLEPLTLINNLLDVEKNPQ 316
>gi|156844606|ref|XP_001645365.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM
70294]
gi|156116026|gb|EDO17507.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM
70294]
Length = 446
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 108/229 (47%), Gaps = 36/229 (15%)
Query: 151 FPPVAPSTQPKPL-----SILQAGVKQPHPPHIPPYLPLFP-----DPHAYIRTPVVTLK 200
+ +A +P PL IL+A K P + P F D + V++LK
Sbjct: 108 YNGLAIQKEPTPLPTVEGVILEAMNKCRLVPSMNPQDYKFSRCGRTDKGVSAMSQVISLK 167
Query: 201 IRSKLTSPGEESDDN---ELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKY 256
+RS LT + + DN E+ Y+ +LN LP DI+V A P K + ARF C R+YKY
Sbjct: 168 VRSNLTPEEQANSDNDSKEIQYVDILNQLLPDDIRVSAVCLRPPKDFDARFSCKHRHYKY 227
Query: 257 WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA------------- 303
F + GLD++ M +AA+Y G +DFRN CK++ + N+KR + A
Sbjct: 228 LFNKEGLDLEKMEQAAKYYEGENDFRNFCKLDGSKQITNYKRTIISASIMHVSGDFYCFD 287
Query: 304 --GVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
G W V+ F GQG E +I+ ++DIEK PR
Sbjct: 288 LIGSAFLWHQVR-------CMMANLFLVGQGLEDHTLIKDMLDIEKTPR 329
>gi|194892272|ref|XP_001977631.1| GG19150 [Drosophila erecta]
gi|190649280|gb|EDV46558.1| GG19150 [Drosophila erecta]
Length = 328
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 66/110 (60%)
Query: 87 NWYKRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRP 146
N +T ++ +I E+G +H++CEL+ R P + DV LALI +GI I LD Y ++
Sbjct: 37 NQGLETLTQMLQALIGEIGNSAHNYCELSGRTMPTVGDVSLALINMGISIASLDPYMRKE 96
Query: 147 MRTVFPPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
P TQ +PLS+LQAG K HP ++P Y P PDPHAYIRTP
Sbjct: 97 THVPIPLPPQQTQQRPLSLLQAGSKSTHPHYVPSYFPPMPDPHAYIRTPT 146
>gi|356574565|ref|XP_003555416.1| PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max]
Length = 426
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 95/180 (52%), Gaps = 28/180 (15%)
Query: 196 VVTLKIRSKL----TSPG------EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V+ L +RS L T+ G +E + E+ Y+ +LN LP DI+++ W P P + A
Sbjct: 147 VIALFLRSNLKISATNNGNSGVVLDEQHEGEIDYVGVLNRVLPNDIRIMGWCPAPVDFHA 206
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R YKY+F + L+I A+ A LVG HDFRN CKM+ N V N++R +T +
Sbjct: 207 RFSCLSREYKYFFWKENLNIPAIEVAGNKLVGEHDFRNFCKMDAAN-VHNYRRCITLFEI 265
Query: 306 TSAWQNVQFNDIKE-VVDSEPS--------------FKKGQGNEKPEIIQQLVDIEKYPR 350
+S +V++ND + V+ S F G+G E P +I L+D + R
Sbjct: 266 SST--DVRYNDNQLWVIKIRGSAFLWHQVRCMVAVLFMVGKGLESPNVIDMLLDTSRILR 323
>gi|207345658|gb|EDZ72410.1| YFL001Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 315
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 112/235 (47%), Gaps = 38/235 (16%)
Query: 196 VVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V++L++RS LT + +D E+PY+ +LN LP DI++ V P P + ARF C+
Sbjct: 33 VISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPNFDARFSCV 91
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT---- 306
R+YKY F L+I+ M KAA Y VG DFRN CK++ + NFKR + + +
Sbjct: 92 HRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSE 151
Query: 307 ---------SAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR------- 350
SA+ Q + ++ F GQ E PEI+ +L DIEK P+
Sbjct: 152 TFYCFDLIGSAFLWHQVRCMMAIL-----FLVGQSLEVPEIVLRLTDIEKTPQRPVYEMA 206
Query: 351 ------IKSAQFPWSSTGATTPNELFRRVFLLSFLAWVDQYRIRQTAHCNIFTNL 399
+ +FP T ++ F + A Y ++ A CNIF ++
Sbjct: 207 NDIPLLLYDCKFPEMDWQEPTVDDYKAIKFTTATEALTLHYELK-AAVCNIFKDV 260
>gi|323348774|gb|EGA83014.1| Deg1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 315
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 92/173 (53%), Gaps = 24/173 (13%)
Query: 196 VVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V++L++RS LT + +D E+PY+ +LN LP DI++ V P P + ARF C+
Sbjct: 33 VISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPNFDARFSCV 91
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT---- 306
R+YKY F L+I+ M KAA Y VG DFRN CK++ + NFKR + + +
Sbjct: 92 HRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSE 151
Query: 307 ---------SAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
SA+ Q + ++ F GQ E PEI+ +L DIEK P+
Sbjct: 152 TFYCFDLIGSAFLWHQVRCMMAIL-----FLVGQSLEVPEIVLRLTDIEKTPQ 199
>gi|426193721|gb|EKV43654.1| hypothetical protein AGABI2DRAFT_188010 [Agaricus bisporus var.
bisporus H97]
Length = 612
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 76/130 (58%), Gaps = 14/130 (10%)
Query: 203 SKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG 262
+K+ +EL Y+ +LN LP I+++AW+PV E +SARF C +R+YKY+F
Sbjct: 215 TKILQDSSSKSRHELDYVGILNRLLPPTIRILAWAPVAENFSARFSCKYRHYKYFFSSHL 274
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVD 322
LDI AM +AA +L+G HDFRNLCK++ + F+R N+ DI+ V+D
Sbjct: 275 LDISAMREAATHLIGEHDFRNLCKVDAQKQITMFRR------------NILRADIEPVID 322
Query: 323 SEPSFKKGQG 332
PS G+G
Sbjct: 323 --PSGNNGEG 330
>gi|195481241|ref|XP_002101572.1| GE17709 [Drosophila yakuba]
gi|194189096|gb|EDX02680.1| GE17709 [Drosophila yakuba]
Length = 328
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 66/110 (60%)
Query: 87 NWYKRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRP 146
N +T ++ +I E+G +H++CEL+ R P + DV LALI +GI I LD Y ++
Sbjct: 37 NQSLETLTQMMQALIGEIGNSAHNYCELSGRTMPTVGDVSLALINMGISIASLDPYMRKE 96
Query: 147 MRTVFPPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
P TQ +PLS+LQAG K HP ++P Y P PDPHAYIRTP
Sbjct: 97 THVPVPLPPQQTQQRPLSLLQAGSKSTHPHYVPSYFPPMPDPHAYIRTPT 146
>gi|356534023|ref|XP_003535557.1| PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max]
Length = 426
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 94/180 (52%), Gaps = 28/180 (15%)
Query: 196 VVTLKIRSKL----TSPG------EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V+ L +RS L T+ G +E + E+ Y+++LN LP DI+++ W P P + A
Sbjct: 147 VIALFLRSNLKISETNNGNSGVVLDEQHEGEIDYVRVLNRVLPNDIRIMGWCPAPVDFHA 206
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R YKY+F + L+I AM A LVG HDFRN CKM+ N V N++R + +
Sbjct: 207 RFSCLSREYKYFFWKENLNIQAMESAGNKLVGEHDFRNFCKMDAAN-VHNYRRRIKLFEI 265
Query: 306 TSAWQNVQFNDIKE-VVDSEPS--------------FKKGQGNEKPEIIQQLVDIEKYPR 350
+ +V++ND + V+ S F G+G E P +I L+D + R
Sbjct: 266 SPT--DVRYNDNQLWVIKIRGSAFLWHQVRCMVVVLFMVGKGLESPNVIDMLLDTARILR 323
>gi|367007832|ref|XP_003688645.1| hypothetical protein TPHA_0P00530 [Tetrapisispora phaffii CBS 4417]
gi|357526955|emb|CCE66211.1| hypothetical protein TPHA_0P00530 [Tetrapisispora phaffii CBS 4417]
Length = 422
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 86/175 (49%), Gaps = 28/175 (16%)
Query: 196 VVTLKIRSKLT---SPGEESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V++L +RS LT E D E+ Y+ +LN LP DI++ V P P + ARF C
Sbjct: 132 VISLNVRSNLTPEQQMNSEFDSKEIQYINILNQLLPDDIRISAVCLRP-PTGFDARFSCQ 190
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA------- 303
+R+YKY F + GL+I AM AA Y G HDFRN CK++ + NFKR + +
Sbjct: 191 YRHYKYLFKKDGLNISAMETAASYFKGEHDFRNFCKLDGSKQITNFKRTMMSSQILQVNE 250
Query: 304 --------GVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
G W V+ + F GQ E PEI+ QLVD+ P+
Sbjct: 251 EFYCFDLIGSAFLWHQVR-------CMTAILFLVGQNLEVPEIVSQLVDVASNPQ 298
>gi|198429149|ref|XP_002129315.1| PREDICTED: similar to Pseudouridylate synthase 3 [Ciona
intestinalis]
Length = 510
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 213 DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAA 272
DD ELPY+ +LN LP DI+++AWSPV + +S R+ C R Y+Y F + +DI+ M++AA
Sbjct: 223 DDGELPYVSLLNQALPPDIRILAWSPVKKTFSPRYQCRSRTYRYAFVRGSMDIELMNEAA 282
Query: 273 QYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ-NVQFNDIKEVVDSEPSF---- 327
Q VG HD RN CK++ N + R + V Q N+ DI S S+
Sbjct: 283 QKFVGRHDMRNFCKVSSENAYRTYVRTINSIKVEEFNQTNLPECDICVATISAESYVYKQ 342
Query: 328 ---------KKGQGNEKPEIIQQLVDIEKYPR 350
+ G G P I +++D+EK P+
Sbjct: 343 IRRMMSILGRIGSGEIPPSTIDEMLDVEKNPK 374
>gi|297739353|emb|CBI29343.3| unnamed protein product [Vitis vinifera]
Length = 466
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 212 SDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKA 271
+ + E+ Y+++LN LP+DI+V+ W PVP + ARF CL R YKY+F + L+I AM A
Sbjct: 210 ASEGEIDYMRVLNRVLPKDIRVMGWCPVPIGFHARFSCLSREYKYFFWRGNLNILAMESA 269
Query: 272 AQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPS----- 326
+ VG HDFRN CKM+ N V N++R + + N + + +
Sbjct: 270 GKKFVGEHDFRNFCKMDAVN-VHNYRRHIISFEIAPTNNRYDGNQLWAIKIKGSAFLWHQ 328
Query: 327 --------FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG E P+++ L+D E+ R
Sbjct: 329 VRCMVAVLFMIGQGLESPDVVDALLDTERTSR 360
>gi|14318522|ref|NP_116655.1| pseudouridine synthase DEG1 [Saccharomyces cerevisiae S288c]
gi|399356|sp|P31115.1|PUS3_YEAST RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=Depressed growth-rate protein DEG1; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|836755|dbj|BAA09239.1| depressed growth-rate protein [Saccharomyces cerevisiae]
gi|51013845|gb|AAT93216.1| YFL001W [Saccharomyces cerevisiae]
gi|285811895|tpg|DAA12440.1| TPA: pseudouridine synthase DEG1 [Saccharomyces cerevisiae S288c]
Length = 442
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 92/173 (53%), Gaps = 24/173 (13%)
Query: 196 VVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V++L++RS LT + +D E+PY+ +LN LP DI++ V P P + ARF C+
Sbjct: 160 VISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPNFDARFSCV 218
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG------ 304
R+YKY F L+I+ M KAA Y VG DFRN CK++ + NFKR + +
Sbjct: 219 HRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSE 278
Query: 305 -------VTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
V SA+ Q + ++ F GQ E PEI+ +L DIEK P+
Sbjct: 279 TFYCFDLVGSAFLWHQVRCMMAIL-----FLVGQSLEVPEIVLRLTDIEKTPQ 326
>gi|452844696|gb|EME46630.1| hypothetical protein DOTSEDRAFT_22677 [Dothistroma septosporum
NZE10]
Length = 667
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 45/178 (25%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF--------------- 258
+ELPY++++N LP DI+++AW P PE +SARF+C R Y+Y+F
Sbjct: 189 DELPYIQLINRVLPSDIRILAWCPHTPENFSARFNCKERRYRYFFTNPAFIPLPGSKGVA 248
Query: 259 ----PQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ 313
P G L++ AM +AA+ G HDFRN CK++ + NF+R + HAGV V+
Sbjct: 249 EDGSPDEGCLNVVAMEEAAKMYEGLHDFRNFCKVDPSKQISNFERRIFHAGVHEVNAGVK 308
Query: 314 ----------------------FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
++ ++ +V F GQG+EKP I+Q L+DI K P
Sbjct: 309 GESAASTSPKLYYFEVRGSAFLWHQVRHLV--AILFLVGQGHEKPSIVQDLLDIHKTP 364
>gi|50293511|ref|XP_449167.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528480|emb|CAG62137.1| unnamed protein product [Candida glabrata]
Length = 438
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 93/168 (55%), Gaps = 14/168 (8%)
Query: 196 VVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V++L++RS LT ++ +D E+ Y+ +LN LP DI++ V P P + ARF C
Sbjct: 154 VISLRVRSNLTDEEQKDPRNDHKEIQYVAILNQLLPDDIRISAVCLRP-PNSFDARFSCE 212
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
+R+YKY F + GLD+D M KAA+ G HDFRN CK++ + N+ R + A + +
Sbjct: 213 YRHYKYLFHKDGLDLDRMQKAAKLYEGEHDFRNFCKLDGSKQITNYNRTMISANIKHVYN 272
Query: 311 NVQFNDI--------KEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
+ D+ + + F GQG E+P +I++++D+ P+
Sbjct: 273 DFYCFDLIGSAFLWHQVRCMTAILFLVGQGLEEPTLIEKMLDVTSMPQ 320
>gi|195370371|ref|XP_002045883.1| GM20625 [Drosophila sechellia]
gi|194121623|gb|EDW43666.1| GM20625 [Drosophila sechellia]
Length = 248
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 76/122 (62%), Gaps = 8/122 (6%)
Query: 196 VVTLKIRSKLTSPGEESDD-----NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDC 249
V+++ +RSK P E D +E+ Y +LN LP++I+ VAW P+ YSARFDC
Sbjct: 112 VISIDLRSK--HPPESQLDPTSLSSEIDYCGLLNRVLPKNIQCVAWMPLRSSVYSARFDC 169
Query: 250 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW 309
+ R+Y+Y+FP+ LDI AM KA LV DFRN CKM+V NGV N+ R + A V +
Sbjct: 170 VSRSYRYFFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARVEACD 229
Query: 310 QN 311
+N
Sbjct: 230 EN 231
>gi|323337774|gb|EGA79017.1| Deg1p [Saccharomyces cerevisiae Vin13]
gi|365765842|gb|EHN07347.1| Deg1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 442
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 92/173 (53%), Gaps = 24/173 (13%)
Query: 196 VVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V++L++RS LT + +D E+PY+ +LN LP DI++ V P P + ARF C+
Sbjct: 160 VISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPNFDARFSCV 218
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT---- 306
R+YKY F L+I+ M KAA Y VG DFRN CK++ + NFKR + + +
Sbjct: 219 HRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSE 278
Query: 307 ---------SAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
SA+ Q + ++ F GQ E PEI+ +L DIEK P+
Sbjct: 279 TFYCFDLIGSAFLWHQVRCMMAIL-----FLVGQSLEVPEIVLRLTDIEKTPQ 326
>gi|195382396|ref|XP_002049916.1| GJ20484 [Drosophila virilis]
gi|194144713|gb|EDW61109.1| GJ20484 [Drosophila virilis]
Length = 509
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 196 VVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLF 251
V+++ +RSK + E+ +E+ Y +LN LP++I+ V+W P+ YSARFDC+
Sbjct: 162 VISIDLRSKHAPDVQMEPEALSSEIDYCSLLNRVLPKNIQCVSWMPLRNPAYSARFDCIS 221
Query: 252 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
R Y+Y+FP+ LDI+AM A Q LV DFRN CKM+V NGV N+ R + A +
Sbjct: 222 RTYRYYFPKGDLDIEAMRIACQSLVCHGDFRNFCKMDVHNGVTNYMRNLQGAAI 275
>gi|392299670|gb|EIW10763.1| Deg1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 442
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 92/173 (53%), Gaps = 24/173 (13%)
Query: 196 VVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V++L++RS LT + +D E+PY+ +LN LP DI++ V P P + ARF C+
Sbjct: 160 VISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPNFDARFSCV 218
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT---- 306
R+YKY F L+I+ M KAA Y VG DFRN CK++ + NFKR + + +
Sbjct: 219 HRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSE 278
Query: 307 ---------SAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
SA+ Q + ++ F GQ E PEI+ +L DIEK P+
Sbjct: 279 TFYCFDLIGSAFLWHQVRCMMAIL-----FLVGQSLEVPEIVLRLTDIEKTPQ 326
>gi|326429850|gb|EGD75420.1| hypothetical protein PTSG_06496 [Salpingoeca sp. ATCC 50818]
Length = 460
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 81/153 (52%), Gaps = 20/153 (13%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQY 274
+EL Y K+LN LP +I+VV W V +SARF C R+YKY+F +A +D AM A +
Sbjct: 158 DELDYTKILNGLLPPEIRVVDWGAVDTDFSARFSCNARHYKYFFHRANMDTAAMQAACDH 217
Query: 275 LVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA-------------WQNVQFNDIKEVV 321
LVG HDFRN CK +V GV NF R + A V A + +FN I
Sbjct: 218 LVGEHDFRNFCKADVAGGVTNFVRTIKEARVCPAEIGDASVHSSDGDFDLWEFNIIGHAF 277
Query: 322 DSEPS-------FKKGQGNEKPEIIQQLVDIEK 347
F G+G+E+P +++ L++I++
Sbjct: 278 LWHQVRCMMAVLFMVGRGDEQPGMVRHLLNIDE 310
>gi|190406572|gb|EDV09839.1| tRNA pseudouridine synthase 3 [Saccharomyces cerevisiae RM11-1a]
gi|256268860|gb|EEU04212.1| Deg1p [Saccharomyces cerevisiae JAY291]
gi|323309245|gb|EGA62466.1| Deg1p [Saccharomyces cerevisiae FostersO]
Length = 442
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 92/173 (53%), Gaps = 24/173 (13%)
Query: 196 VVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V++L++RS LT + +D E+PY+ +LN LP DI++ V P P + ARF C+
Sbjct: 160 VISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPNFDARFSCV 218
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT---- 306
R+YKY F L+I+ M KAA Y VG DFRN CK++ + NFKR + + +
Sbjct: 219 HRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSE 278
Query: 307 ---------SAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
SA+ Q + ++ F GQ E PEI+ +L DIEK P+
Sbjct: 279 TFYCFDLIGSAFLWHQVRCMMAIL-----FLVGQSLEVPEIVLRLTDIEKTPQ 326
>gi|448124451|ref|XP_004204922.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
gi|358249555|emb|CCE72621.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
Length = 432
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 95/167 (56%), Gaps = 14/167 (8%)
Query: 196 VVTLKIRSKLTSPGEES---DDNELPYLKMLNNNLPRDIKVVA--WSPVPEKYSARFDCL 250
V++L +RS L ++S D ELPYL +LN+ LP DI+V A P P+ ++ARF CL
Sbjct: 143 VMSLTVRSNLAPEEQDSTSNDGRELPYLAILNSLLPPDIRVTAVCLHPPPD-FNARFSCL 201
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
+R+Y+Y+F LD++ M KAA+ G HDFRN CK++ + N+KR + A V
Sbjct: 202 YRHYRYFFRPHDLDVELMSKAAKKYEGVHDFRNFCKIDGSKQITNYKREILSADVLPYND 261
Query: 311 NVQFNDIKEVV--------DSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
+ ++K + F GQ +E ++I +L++++KYP
Sbjct: 262 ELYMLELKGTAFLWHQVRCMAAVLFLVGQKHESIDVIDELLNVDKYP 308
>gi|323305104|gb|EGA58854.1| Deg1p [Saccharomyces cerevisiae FostersB]
Length = 431
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 92/173 (53%), Gaps = 24/173 (13%)
Query: 196 VVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V++L++RS LT + +D E+PY+ +LN LP DI++ V P P + ARF C+
Sbjct: 149 VISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPNFDARFSCV 207
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT---- 306
R+YKY F L+I+ M KAA Y VG DFRN CK++ + NFKR + + +
Sbjct: 208 HRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSE 267
Query: 307 ---------SAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
SA+ Q + ++ F GQ E PEI+ +L DIEK P+
Sbjct: 268 TFYCFDLIGSAFLWHQVRCMMAIL-----FLVGQSLEVPEIVLRLTDIEKTPQ 315
>gi|50556320|ref|XP_505568.1| YALI0F18216p [Yarrowia lipolytica]
gi|49651438|emb|CAG78377.1| YALI0F18216p [Yarrowia lipolytica CLIB122]
Length = 443
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 96/167 (57%), Gaps = 14/167 (8%)
Query: 196 VVTLKIRSKLTSPGEE----SDDNELPYLKMLNNNLPRDIKVVAWS-PVPEKYSARFDCL 250
V+ LK+RSKL SP E+ +D+ EL Y+ +LN LP DI++ + + +PE + +RF C
Sbjct: 153 VIALKVRSKL-SPEEQQDAANDNKELNYIHILNQLLPPDIRIYSVALRLPEGFDSRFSCE 211
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
+R+Y+Y+F + LDID M +AA+ +G HD+RN CK++ + + R++ A +
Sbjct: 212 YRHYRYFFHKGDLDIDLMRQAAKLYLGEHDYRNFCKVDGSKQLAHHNRVMLEAEIEQLSD 271
Query: 311 NVQFNDIKEVV--------DSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
++ + ++K F GQ EKP +I L++ EKYP
Sbjct: 272 DIYYFNLKGRAFLWHQVRCMMAILFLVGQKLEKPSVITDLLNPEKYP 318
>gi|151940762|gb|EDN59149.1| tRNA-pseudouridine synthase [Saccharomyces cerevisiae YJM789]
Length = 442
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 92/173 (53%), Gaps = 24/173 (13%)
Query: 196 VVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V++L++RS LT + +D E+PY+ +LN LP DI++ V P P + ARF C+
Sbjct: 160 VISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPNFDARFSCV 218
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT---- 306
R+YKY F L+I+ M KAA Y VG DFRN CK++ + NFKR + + +
Sbjct: 219 HRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSE 278
Query: 307 ---------SAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
SA+ Q + ++ F GQ E PEI+ +L DIEK P+
Sbjct: 279 TFYCFDLIGSAFLWHQVRCMMAIL-----FLVGQSLEVPEIVLRLTDIEKTPQ 326
>gi|194882124|ref|XP_001975163.1| GG20714 [Drosophila erecta]
gi|190658350|gb|EDV55563.1| GG20714 [Drosophila erecta]
Length = 497
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 95/176 (53%), Gaps = 25/176 (14%)
Query: 196 VVTLKIRSKLTSPGEESD----DNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCL 250
V+++ +RSK SP + D E+ Y +LN LP++I+ VAW P+ YSARFDC+
Sbjct: 162 VISIDLRSK-HSPEFQLDPTALSTEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSARFDCV 220
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
R+Y+Y+FP+ LDI AM +A L DFRN CKM+V NGV N+ R + A V + +
Sbjct: 221 SRSYRYYFPKGDLDIGAMSQACDLLERHADFRNFCKMDVHNGVTNYMRNLQSARVVACDE 280
Query: 311 N------------VQFN-----DIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
N +Q N I+ ++ GQ E P +I +L+D+E P
Sbjct: 281 NHTNSGYDMYYLEIQANAFLWHQIRCIM--AVLLLVGQKKESPTVISELLDVESNP 334
>gi|259146190|emb|CAY79449.1| Deg1p [Saccharomyces cerevisiae EC1118]
Length = 442
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 92/173 (53%), Gaps = 24/173 (13%)
Query: 196 VVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V++L++RS LT + +D E+PY+ +LN LP DI++ V P P + ARF C+
Sbjct: 160 VISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPNFDARFSCV 218
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT---- 306
R+YKY F L+I+ M KAA Y VG DFRN CK++ + NFKR + + +
Sbjct: 219 HRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSE 278
Query: 307 ---------SAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
SA+ Q + ++ F GQ E PEI+ +L DIEK P+
Sbjct: 279 TFYCFDLIGSAFLWHQVRCMMAIL-----FLVGQSLEVPEIVLRLTDIEKTPQ 326
>gi|302677288|ref|XP_003028327.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8]
gi|300102015|gb|EFI93424.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8]
Length = 296
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 73/111 (65%), Gaps = 4/111 (3%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
V++L +RS L+ + + P+ M+N +LP IK++AWSPV +S+R+ C +R+YK
Sbjct: 115 VISLWVRSALS----QEELLPHPFTYMINRHLPDPIKILAWSPVDLSFSSRYSCTWRHYK 170
Query: 256 YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT 306
Y+FP GLDI AM A YL GTH+FRNLCK++ + F+R + HA ++
Sbjct: 171 YFFPPVGLDIPAMRAACAYLPGTHEFRNLCKIDPTKQLDQFRRDILHASIS 221
>gi|393227193|gb|EJD34883.1| pseudouridine synthase, partial [Auricularia delicata TFB-10046
SS5]
Length = 411
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 70/113 (61%), Gaps = 9/113 (7%)
Query: 194 TPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
+ VV+L IR+ E PY+ MLN LP ++++AW+PV + +SARF+C +R+
Sbjct: 116 SQVVSLWIRTA---------KKEFPYVSMLNRVLPPSLRILAWAPVADTFSARFNCRYRH 166
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT 306
YKY+F G+D+ M A L+G HDFRNLCK++ + NF+R + A ++
Sbjct: 167 YKYFFSPDGIDLARMRAGAALLLGEHDFRNLCKLDAAKQISNFRRRIDRADIS 219
>gi|170097145|ref|XP_001879792.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645195|gb|EDR09443.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 446
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 79/146 (54%), Gaps = 23/146 (15%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGT 278
YL +LN LP I+V+AWSPV K+SARF CL+R+YKY+F GLDI M +AA LVG
Sbjct: 135 YLSILNRLLPDTIRVLAWSPVAPKFSARFSCLYRHYKYFFSPLGLDIPRMQQAALRLVGD 194
Query: 279 HDFRNLCKMNVGNGVVNFKRLVTHAG------------------VTSAWQNVQFNDIKEV 320
HDFRNLCK++ + F+R V A V +A+ Q I +
Sbjct: 195 HDFRNLCKLDPQKQITIFRRKVITAEIEPLSLAENGEGVYVFNLVGTAFLYHQVRHIMAI 254
Query: 321 VDSEPSFKKGQGNEKPEIIQQLVDIE 346
+ F G G E P ++ L+++E
Sbjct: 255 L-----FLVGTGLEPPSVVSSLLNVE 275
>gi|449544039|gb|EMD35013.1| hypothetical protein CERSUDRAFT_85755 [Ceriporiopsis subvermispora
B]
Length = 519
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 63/94 (67%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQY 274
EL Y+ +LNN LP I++ AW+PV ++SARF C +R+YKY+F GLD+DAM AA
Sbjct: 197 TELNYVSLLNNVLPPTIRINAWAPVAPEFSARFSCRYRHYKYFFSPHGLDLDAMRDAASR 256
Query: 275 LVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA 308
LVG HDFRNLCK++ + +F R + A + A
Sbjct: 257 LVGEHDFRNLCKVDPQKQLTSFARRILSAEINPA 290
>gi|349577915|dbj|GAA23082.1| K7_Deg1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 442
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 92/173 (53%), Gaps = 24/173 (13%)
Query: 196 VVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V++L++RS LT + +D E+PY+ +LN LP DI++ V P P + ARF C+
Sbjct: 160 VISLEVRSNLTDEEQGDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPNFDARFSCV 218
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT---- 306
R+YKY F L+I+ M KAA Y VG DFRN CK++ + NFKR + + +
Sbjct: 219 HRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSE 278
Query: 307 ---------SAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
SA+ Q + ++ F GQ E PEI+ +L DIEK P+
Sbjct: 279 TFYCFDLIGSAFLWHQVRCMMAIL-----FLVGQSLEVPEIVLRLTDIEKTPQ 326
>gi|336379040|gb|EGO20196.1| hypothetical protein SERLADRAFT_363593 [Serpula lacrymans var.
lacrymans S7.9]
Length = 444
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 20/167 (11%)
Query: 196 VVTLKIRSKLTSP--GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
VV+L +RS L + +EL Y+ +LN LP I+V+AWSP+ +SARF+C R+
Sbjct: 127 VVSLWVRSALDENRLKDAETRSELRYVSILNRVLPPTIRVLAWSPISSTFSARFNCQSRH 186
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT------- 306
YKY+F LD+ M +AA LVG HDFRNLCK++ + NF R V A ++
Sbjct: 187 YKYFFSPQELDLGLMQQAADRLVGEHDFRNLCKLDPAKQITNFNRRVLLAKISPISDHLC 246
Query: 307 ------SAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEK 347
+A+ Q I ++ F G G E P I+ L+++ K
Sbjct: 247 VFDLRGTAFLYHQVRHIMAIL-----FLVGTGLEHPSIVSTLLNVGK 288
>gi|195397547|ref|XP_002057390.1| GJ17059 [Drosophila virilis]
gi|194147157|gb|EDW62876.1| GJ17059 [Drosophila virilis]
Length = 332
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 66/110 (60%)
Query: 87 NWYKRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRP 146
N +T ++ +I E+G +H++CEL R P + DV LALI +GI I L+ Y +R
Sbjct: 38 NQCLETLTQMMQALIVEIGNSAHNYCELGGRTMPTVGDVSLALINMGINISSLEPYVRRV 97
Query: 147 MRTVFPPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
P + TQ + LS+LQAG K HP ++P YLP PDPHAYIRTP
Sbjct: 98 SHVPIPLPSQQTQQRQLSLLQAGSKASHPHYVPSYLPAMPDPHAYIRTPT 147
>gi|238882564|gb|EEQ46202.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 491
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 196 VVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V+++ +RS +T + E DD E+ Y+ +LN NLP DIKV + P P+ + ARF CL
Sbjct: 199 VISINVRSNITLENQSNPEFDDLEIDYISVLNANLPSDIKVHSICLRPPPD-FDARFSCL 257
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
R+Y+Y F + LDI+ M++ A+ G HDFRN CK++ + NF R + + + Q
Sbjct: 258 SRHYRYIFRKQDLDIELMNQGAKLYQGIHDFRNFCKLDGSKQITNFVREIYQSQIIHLHQ 317
Query: 311 NVQFNDIKEVVDSEPS--------FKKGQGNEKPEIIQQLVDIEKYP 349
+ D+K F GQG E P II L+D K+P
Sbjct: 318 DYYCFDLKGSAFLWHQVRCMVAILFTIGQGLESPSIITDLMDTNKFP 364
>gi|171689408|ref|XP_001909644.1| hypothetical protein [Podospora anserina S mat+]
gi|170944666|emb|CAP70777.1| unnamed protein product [Podospora anserina S mat+]
Length = 635
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 99/191 (51%), Gaps = 44/191 (23%)
Query: 202 RSKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF 258
+ + +P +E +D +E+ Y K+LN LP DIKV+AW+P +PE +SARF C R Y+Y+F
Sbjct: 242 KKQQQNPQKEWEDIVDEINYPKVLNRLLPPDIKVLAWAPTLPEGFSARFSCYERQYRYFF 301
Query: 259 --------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA- 303
LDI AM KAA+Y G HDFRN CK++ G + +F+R +
Sbjct: 302 TNPSMAPTLLAPGEKSGWLDIAAMKKAAKYFEGLHDFRNFCKVDGGKQITSFQRRIFECD 361
Query: 304 ---------GVTSAWQNVQ---------------FNDIKEVVDSEPSFKKGQGNEKPEII 339
GV + W + ++ I+ +V F GQG E+PE++
Sbjct: 362 IEEVEGQDLGVVNFWGGEKKGKVYYFHVRGSAFLWHQIRHMVAI--VFNVGQGLERPEVV 419
Query: 340 QQLVDIEKYPR 350
++L+D+E+ R
Sbjct: 420 RELLDVERNGR 430
>gi|296423394|ref|XP_002841239.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637475|emb|CAZ85430.1| unnamed protein product [Tuber melanosporum]
Length = 483
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 99/201 (49%), Gaps = 46/201 (22%)
Query: 196 VVTLKIRSKLTSPGEESDD-------------------NELPYLKMLNNNLPRDIKVVAW 236
V+ +++RS P + +DD +ELPY ++LN LP+DI+V+AW
Sbjct: 106 VIGVRVRSNRPLPKKPTDDVAEEGGEEGKEKTEFDDEKDELPYPQILNRLLPKDIRVLAW 165
Query: 237 SP-VPEKYSARFDCLFRNYKYWFPQ-----------AGLDIDAMHKAAQYLVGTHDFRNL 284
P P +SARF+C R+Y+Y+F LDID M +AA+ VG HDFRN
Sbjct: 166 CPHPPPTFSARFNCQQRHYRYFFTNPAIVPSPNSTVGNLDIDKMREAAKLYVGDHDFRNF 225
Query: 285 CKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIK----EVVDS-----------EPSFKK 329
CK++ + F R++ HA + Q+ N+ K E+ S F
Sbjct: 226 CKLDASKQITRFDRVIHHADIVELPQSSPNNNPKVYYFELHGSAFLWHQVRHMIAILFLI 285
Query: 330 GQGNEKPEIIQQLVDIEKYPR 350
QG E+P ++ +++DI K PR
Sbjct: 286 AQGLEQPSLVTEMLDISKNPR 306
>gi|291225372|ref|XP_002732682.1| PREDICTED: TBP-associated factor 8-like [Saccoglossus kowalevskii]
Length = 290
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 64/103 (62%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T +I I E+G + +CEL+ R +PML DV ++LIE+G + L +AK+ R +
Sbjct: 41 LTEMIQSYITELGRSAQTYCELSGRTEPMLNDVAVSLIEMGTDLAALTMHAKKSQRVLIQ 100
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTP 195
P P ILQAG K+PHP HIP YLP FPDPH YI+TP
Sbjct: 101 PQEQMRPPVTPRILQAGEKKPHPSHIPDYLPSFPDPHTYIKTP 143
>gi|401840675|gb|EJT43400.1| DEG1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 441
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 97/173 (56%), Gaps = 24/173 (13%)
Query: 196 VVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V++LK+RS LT+ + +D E+ Y+++LN LP DI++ V P P+ + ARF C+
Sbjct: 159 VISLKVRSNLTNEEQLDSANDCREISYVRVLNQLLPDDIRISAVCLRPPPD-FDARFSCV 217
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT---- 306
R+YKY F L+ID M KAA Y +G +DFRN CK++ + NFKR + + +
Sbjct: 218 HRHYKYVFNGKNLNIDKMSKAASYFLGENDFRNFCKLDGSKQITNFKRTMLSSKILPLSD 277
Query: 307 ---------SAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
SA+ Q + ++ F GQ E+PE++ +L+DIEK P+
Sbjct: 278 TFYCFDLIGSAFLWHQVRCMMAIL-----FLAGQELEEPEMVLRLLDIEKTPQ 325
>gi|365760937|gb|EHN02619.1| Deg1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 437
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 97/173 (56%), Gaps = 24/173 (13%)
Query: 196 VVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V++LK+RS LT+ + +D E+ Y+++LN LP DI++ V P P+ + ARF C+
Sbjct: 159 VISLKVRSNLTNEEQLDPANDCREISYVRVLNQLLPDDIRISAVCLRPPPD-FDARFSCV 217
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT---- 306
R+YKY F L+ID M KAA Y +G +DFRN CK++ + NFKR + + +
Sbjct: 218 HRHYKYVFNGKNLNIDKMSKAASYFLGENDFRNFCKLDGSKQITNFKRTMLSSKILPLSD 277
Query: 307 ---------SAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
SA+ Q + ++ F GQ E+PE++ +L+DIEK P+
Sbjct: 278 TFYCFDLIGSAFLWHQVRCMMAIL-----FLAGQELEEPEMVLRLLDIEKTPQ 325
>gi|398409422|ref|XP_003856176.1| hypothetical protein MYCGRDRAFT_89199 [Zymoseptoria tritici IPO323]
gi|339476061|gb|EGP91152.1| hypothetical protein MYCGRDRAFT_89199 [Zymoseptoria tritici IPO323]
Length = 534
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 37/170 (21%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVP-EKYSARFDCLFRNYKYWF------PQAG----- 262
+ELPY+++LN LP DI+++AW P P +SARF+C R Y+Y+F P G
Sbjct: 189 DELPYIQLLNRVLPSDIRILAWCPTPPSDFSARFNCKERRYRYFFTNPAYMPLPGSSASK 248
Query: 263 --------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA------ 308
LDI AM +AA G HDFRN CK++ + NF+R + HAG+
Sbjct: 249 RRGAEDGWLDISAMQQAAAKYEGLHDFRNFCKVDASKQIGNFERRIFHAGIHKVEGTGEG 308
Query: 309 ----WQNVQ-----FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
W V+ ++ ++ +V F GQG E P ++ L+D+EK P
Sbjct: 309 PELYWFEVRGSAFLWHQVRHLVAV--VFLVGQGYEDPSVVDYLLDVEKTP 356
>gi|303275814|ref|XP_003057201.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461553|gb|EEH58846.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 281
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 91/180 (50%), Gaps = 32/180 (17%)
Query: 196 VVTLKIRSKLT------SPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 249
+V+L+ RS+ T P D +EL Y +LN LP DI+V W V E +SARFDC
Sbjct: 88 LVSLRARSRGTRYTPPSPPPPAKDADELDYPSILNRALPDDIRVTGWCYVDEAFSARFDC 147
Query: 250 LFRNYKYWFP--QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRL-------- 299
+R+YKY+F GLD++ M AA+ L G HDFRN CKM+V N + +R+
Sbjct: 148 EWRHYKYFFTLHDGGLDLEKMRDAARRLEGEHDFRNFCKMDVKNVHNHARRILESASSSA 207
Query: 300 ---------VTHAGVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
++ G W V+ + V+ F G G E P +I L+D+EK R
Sbjct: 208 SGAPPRLCYISVKGTAFLWHQVRC--VAAVL-----FLVGLGKEPPSVIDDLLDLEKTTR 260
>gi|164659606|ref|XP_001730927.1| hypothetical protein MGL_1926 [Malassezia globosa CBS 7966]
gi|159104825|gb|EDP43713.1| hypothetical protein MGL_1926 [Malassezia globosa CBS 7966]
Length = 604
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 74/140 (52%), Gaps = 30/140 (21%)
Query: 196 VVTLKIRSKLTS-------------PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEK 242
VV L IRS+ P ++ D ELPY+ LN LP I++ AWSPV
Sbjct: 150 VVALWIRSRCVDERPLRYKTGEAAIPLTDTSDEELPYVATLNRLLPPTIRIQAWSPVRPT 209
Query: 243 YSARFDCLFRNYKY-----------WFPQA------GLDIDAMHKAAQYLVGTHDFRNLC 285
+SARFDC++R+YKY W P++ LD+D M AA LVG HDFRN+C
Sbjct: 210 FSARFDCVYRHYKYFFTLGAPSTLVWQPESLSQFSGRLDLDRMRDAAARLVGEHDFRNMC 269
Query: 286 KMNVGNGVVNFKRLVTHAGV 305
K++ + NF+R + A +
Sbjct: 270 KVDASKQITNFRRRIDGASI 289
>gi|340378747|ref|XP_003387889.1| PREDICTED: tRNA pseudouridine synthase 3-like [Amphimedon
queenslandica]
Length = 434
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 81/153 (52%), Gaps = 19/153 (12%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
ELPYL MLN LP+DIK+ AW+PVP ++SARF+ + R YKY+FP +DI+ M + A+
Sbjct: 152 ELPYLNMLNRVLPKDIKLSAWAPVPPQFSARFNTMHRIYKYYFPMGSMDIELMREGARKF 211
Query: 276 VGTHDFRNLCKM---NVGNGVVNFKRLVTHAGVTSAWQN---VQFNDIKEVVDSEPSFKK 329
+G HDFRN CK ++ + F R + + QN V + + + +F +
Sbjct: 212 IGHHDFRNFCKYDTNDLATQSIKFDRTILDIKIEPLDQNSSVVSSHQLYACTVTGLAFLR 271
Query: 330 -------------GQGNEKPEIIQQLVDIEKYP 349
G E+P II ++DI + P
Sbjct: 272 HQIRCMMSLLFLVGHKLEQPSIIDYMLDISQCP 304
>gi|405964001|gb|EKC29529.1| Transcription initiation factor TFIID subunit 8 [Crassostrea gigas]
Length = 275
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 2/103 (1%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ + E+G S F ELA R + M+ DV++ALIE+G + GL +AKRP ++VF
Sbjct: 40 LTEMLQSFLTELGRSSQAFAELAGRTEGMMTDVVMALIEMGQNLQGLPAHAKRPNKSVFL 99
Query: 152 PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRT 194
PP + P P + LQAG K PHP HIP ++P FPDPH YIRT
Sbjct: 100 PPSHSTPTPNPRT-LQAGDKMPHPSHIPDHMPAFPDPHTYIRT 141
>gi|168049023|ref|XP_001776964.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671665|gb|EDQ58213.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 680
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 85/168 (50%), Gaps = 37/168 (22%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDID------- 266
++E Y+ +LN LP DI+V+ W PVP ++ARF C++R YKY+F GL+ID
Sbjct: 374 EDEYDYVGILNRALPEDIRVLGWCPVPPGFNARFSCMYREYKYFFIDDGLNIDVWTLIYA 433
Query: 267 ------AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA---------GVTSAW-Q 310
M A + G HDF N CKM+ N V N+ R +TH G S W
Sbjct: 434 FNRQYNVMKFACKQFEGEHDFTNFCKMDAAN-VHNYMRTITHFDIIPSNEKWGGKSVWIM 492
Query: 311 NV--------QFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
NV Q + V+ F G G+EKP I+++L+D++K R
Sbjct: 493 NVKGTAFLWHQVRCMAAVL-----FMVGAGHEKPTIVEELLDVKKIVR 535
>gi|363755522|ref|XP_003647976.1| hypothetical protein Ecym_7325 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892012|gb|AET41159.1| hypothetical protein Ecym_7325 [Eremothecium cymbalariae
DBVPG#7215]
Length = 431
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 16/170 (9%)
Query: 151 FPPVAPSTQPKPL-----SILQAGVKQPHPPHIPPYLPLFP-----DPHAYIRTPVVTLK 200
+ +A +P PL +IL+A K P + P F D V++L
Sbjct: 95 YNGLAIQKEPTPLPTVEGTILEAMSKCKLVPSMVPQDYNFSRCGRTDKGVSAMNQVISLS 154
Query: 201 IRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCLFRNYK 255
+RS LT+ + +D E+PY+ +LN LP DI+V V P PE + ARF C +R+YK
Sbjct: 155 VRSNLTAEEQLDPANDSKEIPYVHILNQLLPDDIRVSAVCLRP-PEGFDARFSCKYRHYK 213
Query: 256 YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
Y F + L+ID M +AA+ +G HDFRN CK++ + N+KR++ + +
Sbjct: 214 YLFKKDSLNIDLMQEAAKMYIGEHDFRNFCKLDGSKQITNYKRVILSSQI 263
>gi|328861209|gb|EGG10313.1| hypothetical protein MELLADRAFT_76951 [Melampsora larici-populina
98AG31]
Length = 568
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 74/130 (56%), Gaps = 8/130 (6%)
Query: 185 FPDPHAYIR-TPVVTLKIRSK-LTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEK 242
F DP + R T ++ K L S ELPY+ +LN+ LP IKV+AWSPV +
Sbjct: 205 FRDPEGFERSTDEENEEVHPKILNSSISNKPQEELPYISILNSLLPESIKVIAWSPVSTE 264
Query: 243 YSARFDCLFRNYKYWFPQ------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 296
+ ARF C R+YKY+F + LDI+ M + A+ L+G HDFRNLCK++ + NF
Sbjct: 265 FDARFSCKGRHYKYFFTKFESDLNQSLDIEMMREGAKKLIGEHDFRNLCKLDKSKQIENF 324
Query: 297 KRLVTHAGVT 306
KR + A +
Sbjct: 325 KREIYSAEIN 334
>gi|260797637|ref|XP_002593808.1| hypothetical protein BRAFLDRAFT_214741 [Branchiostoma floridae]
gi|229279038|gb|EEN49819.1| hypothetical protein BRAFLDRAFT_214741 [Branchiostoma floridae]
Length = 286
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 64/105 (60%)
Query: 92 AVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF 151
++T ++ I E+G + +CELA R +PML DV ++LIE+G I GL YA+R R
Sbjct: 40 SLTEMLQSYITEMGRSAKQYCELAGRTEPMLTDVTVSLIEMGADIEGLPAYARRANRLTM 99
Query: 152 PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
+ P +LQ G ++PHP ++P +LP FPDPH YIRTP
Sbjct: 100 TAQPQARTPGNPKVLQTGTRKPHPSYVPEHLPAFPDPHTYIRTPT 144
>gi|409075831|gb|EKM76207.1| hypothetical protein AGABI1DRAFT_108952 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 598
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 63/91 (69%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQY 274
+EL Y+ +LN LP I+++AW+PV E +SARF C +R+YKY+F LDI AM +AA +
Sbjct: 227 HELDYVGILNRLLPPTIRILAWAPVAENFSARFSCKYRHYKYFFSSHLLDISAMREAATH 286
Query: 275 LVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
L+G HDFRNLCK++ + F+R + A +
Sbjct: 287 LIGEHDFRNLCKVDAQKQITMFRRNILRADI 317
>gi|195026984|ref|XP_001986382.1| GH21331 [Drosophila grimshawi]
gi|193902382|gb|EDW01249.1| GH21331 [Drosophila grimshawi]
Length = 503
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 95/181 (52%), Gaps = 29/181 (16%)
Query: 196 VVTLKIRSKLTSPGE-ESDD--NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLF 251
V+++ +RSK + ESD E+ Y +LN LP++I+ V+W P+ YSARFDC+
Sbjct: 161 VISIDLRSKHAPDVQLESDSLATEIDYCSLLNRVLPKNIQCVSWMPLRNHVYSARFDCIS 220
Query: 252 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA-------- 303
R Y+Y+FP+ LDI+AM A +V DFRN CKM+V NGV N+ R + A
Sbjct: 221 RTYRYYFPKGDLDIEAMRMACDLIVCHGDFRNFCKMDVHNGVTNYMRNLQAARIQACEGT 280
Query: 304 ----------GVTSAWQNVQFN-----DIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKY 348
G T + +Q N I+ ++ GQ +E+P II +L+D+
Sbjct: 281 AVEVENDLNSGYTMYYLEIQANAFLWHQIRCIM--AVLLLVGQKHEEPVIISKLLDVVSN 338
Query: 349 P 349
P
Sbjct: 339 P 339
>gi|406603476|emb|CCH45032.1| putative tRNA pseudouridine synthase [Wickerhamomyces ciferrii]
Length = 412
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 26/173 (15%)
Query: 196 VVTLKIRSKLTSPGEESDDN----ELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDC 249
V++LK+RS LT P E+ D N E Y+ +LN LP DIK+ ++ P P+ + ARF C
Sbjct: 127 VISLKVRSNLT-PEEQLDPNLDSKEFDYINILNGILPSDIKIHEISLRP-PQGFDARFSC 184
Query: 250 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV---- 305
R+YKY F Q GLDI+ M KAA+ G+HDFRN CK++ + N++R + + +
Sbjct: 185 TSRHYKYLFHQQGLDIELMQKAAKLYEGSHDFRNFCKIDGSKQISNYERTILKSQILDLG 244
Query: 306 ---------TSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
SA+ Q ++ ++ F GQ E P I+ QL++I++ P
Sbjct: 245 NGLYCFDLEGSAFLWHQVRNMVAIL-----FLVGQKLESPGIVTQLMNIQETP 292
>gi|241955317|ref|XP_002420379.1| tRNA pseudouridine synthase, putative [Candida dubliniensis CD36]
gi|223643721|emb|CAX41457.1| tRNA pseudouridine synthase, putative [Candida dubliniensis CD36]
Length = 444
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 196 VVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V+++ +RS L+ + E DD E+ Y+ +LN NLP DIKV + P PE + ARF CL
Sbjct: 154 VISIDVRSNLSLENQANPEFDDQEIDYISVLNANLPSDIKVHSICLRPPPE-FDARFSCL 212
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
+Y+Y F + L+ID M++ A G HDFRN CK++ + NF R + A + Q
Sbjct: 213 SCHYRYIFRKQDLNIDLMNQGANLYQGIHDFRNFCKLDGSKQITNFVREIYQAQILHLHQ 272
Query: 311 NVQFNDIKEVVDSEPS--------FKKGQGNEKPEIIQQLVDIEKYP 349
+ D+K F GQ E P II L+D+ KYP
Sbjct: 273 DYYCFDLKGSAFLWHQVRCMVAILFSIGQELESPSIITDLMDMTKYP 319
>gi|195060254|ref|XP_001995774.1| GH17580 [Drosophila grimshawi]
gi|193896560|gb|EDV95426.1| GH17580 [Drosophila grimshawi]
Length = 332
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 64/104 (61%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ ++ E+G SH++CEL R P + DV LALI +GI + L+ +++R P
Sbjct: 43 LTQMMQSLLVEIGNSSHNYCELGGRTMPTVGDVNLALINMGINVGSLEAFSRRANVATIP 102
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
A TQ + L++LQAG K HP ++P Y P PDPH YIRTP
Sbjct: 103 LPAQQTQQRQLNLLQAGTKASHPHYVPSYFPPMPDPHTYIRTPT 146
>gi|448122103|ref|XP_004204367.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
gi|358349906|emb|CCE73185.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
Length = 430
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 14/167 (8%)
Query: 196 VVTLKIRSKLTSPGEES---DDNELPYLKMLNNNLPRDIKVVA--WSPVPEKYSARFDCL 250
V++L +RS L ++S D ELPYL +LN+ LP DI+V A P P ++ARF CL
Sbjct: 141 VMSLTVRSNLAPEEQDSTSNDGRELPYLAILNSLLPPDIRVTAVCLHP-PPNFNARFSCL 199
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
+R Y+Y+F LD++ M KAA+ G HDFR+ CK++ + N+KR + A V
Sbjct: 200 YRQYRYFFRPHDLDVELMSKAAKKYEGVHDFRSFCKIDGSKQITNYKREILSADVLPYDD 259
Query: 311 NVQFNDIKEVV--------DSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
+ ++K + F GQ +E ++I +L++++KYP
Sbjct: 260 ELYMLELKGTAFLWHQVRCMAAVLFLVGQKHESIDVIDELLNVDKYP 306
>gi|68490066|ref|XP_711154.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
gi|68490103|ref|XP_711136.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
gi|46432414|gb|EAK91897.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
gi|46432433|gb|EAK91915.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
Length = 489
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 196 VVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V+++ +RS +T + E DD E+ Y+ +LN NLP DIKV + P P+ + ARF CL
Sbjct: 197 VISINVRSNITLENQSNPEFDDLEIDYISVLNANLPSDIKVHSICLRPPPD-FDARFSCL 255
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
R+Y+Y F + LDI+ M++ A+ G HDFRN CK++ + NF R + + + Q
Sbjct: 256 SRHYRYIFRKQDLDIELMNQGAKLYQGIHDFRNFCKLDGSKQITNFVREIYQSQIIHLHQ 315
Query: 311 NVQFNDIKEVVDSEPS--------FKKGQGNEKPEIIQQLVDIEKYP 349
+ D+K F GQ E P II L+D K+P
Sbjct: 316 DYYCFDLKGSAFLWHQVRCMVAILFTIGQSLESPSIITDLMDTNKFP 362
>gi|289742237|gb|ADD19866.1| TBP-associated transcription factor Prodos [Glossina morsitans
morsitans]
Length = 319
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 71/104 (68%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ ++ EVG + +CEL+ R P+L DV +AL+ +GI + G++T+AKR R + P
Sbjct: 42 LTEMLQSMLVEVGQSARSYCELSGRTIPVLGDVTVALVNMGISLQGIETFAKREGRQIIP 101
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
A Q K L++LQAG K HP +I PYLPLFPDPHAY+RTP
Sbjct: 102 MPAQQQQQKQLNLLQAGTKSQHPSYILPYLPLFPDPHAYVRTPT 145
>gi|224066589|ref|XP_002302151.1| predicted protein [Populus trichocarpa]
gi|222843877|gb|EEE81424.1| predicted protein [Populus trichocarpa]
Length = 465
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 91/194 (46%), Gaps = 45/194 (23%)
Query: 196 VVTLKIRSKL------------TSPGEESDD-NELPYLKMLNNNLPRDIKVVAWSPVPEK 242
V+ L +RSKL T P E+ E+ Y+++LN LP+DI++V W PVP
Sbjct: 158 VIALYLRSKLKDIDAHNKHSGETVPEEQDGQPGEIDYVRVLNGVLPKDIRIVGWCPVPSD 217
Query: 243 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNV------------- 289
+SARF CL R YKY+F L++ M A + L+G HDFRN CKM+
Sbjct: 218 FSARFSCLSREYKYFFWNDNLNLLVMETAGKKLIGEHDFRNFCKMDAVKVHNYRRNVMSF 277
Query: 290 ---------GNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDS----------EPSFKKG 330
+G+ + K ++T + + ++ Q IK + F G
Sbjct: 278 EISPCDMSHSSGMGSVKWMITKPSIRTRFEGHQLYAIKIKGSAFLWHQVRCMVAVLFMIG 337
Query: 331 QGNEKPEIIQQLVD 344
QG E PE+I L+D
Sbjct: 338 QGLESPEVIDALLD 351
>gi|194768102|ref|XP_001966152.1| GF19371 [Drosophila ananassae]
gi|190623037|gb|EDV38561.1| GF19371 [Drosophila ananassae]
Length = 322
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 63/104 (60%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ +I E+G +H+FCEL+ R P + DV LALI +GI I LD Y + P
Sbjct: 43 LTQMLQALIVEIGNSAHNFCELSGRTMPTVGDVSLALINMGISISSLDPYMRSEKHAPIP 102
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
TQ + L++LQAG K HP ++P Y P PDPHAYIRTP
Sbjct: 103 LPPQQTQQRQLNLLQAGSKSSHPHYVPSYFPSMPDPHAYIRTPT 146
>gi|366990335|ref|XP_003674935.1| hypothetical protein NCAS_0B04790 [Naumovozyma castellii CBS 4309]
gi|342300799|emb|CCC68563.1| hypothetical protein NCAS_0B04790 [Naumovozyma castellii CBS 4309]
Length = 444
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 196 VVTLKIRSKLTSPGEE----SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDC 249
V++L++RS LT P E+ +D E+ Y+ +LN LP DI+V V P PE + ARF C
Sbjct: 154 VISLRVRSNLT-PEEQLDPANDRREIKYVHILNQLLPDDIRVSAVCLRP-PEGFDARFSC 211
Query: 250 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW 309
R+YKY F GLDI M + A +G HDFRN CK++ + N+KR V A +
Sbjct: 212 ESRHYKYLFSNDGLDISRMQEGATLFLGEHDFRNFCKLDGSKQITNYKRSVISAKILHIR 271
Query: 310 QNVQFNDI--------KEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
++ D+ + F GQG E+P +I + DI K P+
Sbjct: 272 DDLYCLDLVGSAFLWHQVRCMMAHLFLIGQGLEEPSLINDMFDIVKTPQ 320
>gi|289742875|gb|ADD20185.1| pseudouridylate synthase [Glossina morsitans morsitans]
Length = 444
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 21/175 (12%)
Query: 196 VVTLKIRSKLTSPG---EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLF 251
V+++ +RSK E + E+ Y ++N LP++I+ ++W P+ +SARFDC+
Sbjct: 119 VISIDLRSKFPEKQQFEESCLEKEIDYCGIMNRVLPKNIRCISWMPIRNHLFSARFDCIT 178
Query: 252 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA-WQ 310
R Y+Y+FP+ L+I AM A + L DFRNLCKM+V NGV N+ R + A V Q
Sbjct: 179 RTYRYFFPKGNLNITAMQDACKLLQRHTDFRNLCKMDVHNGVTNYVRHIEAANVRLCPHQ 238
Query: 311 N--------VQFNDIKEVVDSEPSFK--------KGQGNEKPEIIQQLVDIEKYP 349
N + + +IK + GQ E+P +I +L+++EK P
Sbjct: 239 NESKNKGYAMHYLEIKANAFLWHQIRCIMTVLLLIGQEKEEPSVINELLNVEKNP 293
>gi|392563519|gb|EIW56698.1| tRNA pseudouridine synthase [Trametes versicolor FP-101664 SS1]
Length = 503
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 64/96 (66%)
Query: 210 EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMH 269
E+++D+ Y+ LN+ LP I+++AWSPV + +SAR C +R+YKY+F GLD+ AM
Sbjct: 181 EDAEDDNTAYVYKLNHILPPTIRILAWSPVADDFSARHSCRWRHYKYFFSPHGLDLAAMS 240
Query: 270 KAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
AA L+G HDFRNLCK++ + F R + HA V
Sbjct: 241 DAASRLLGEHDFRNLCKVDASKQLTVFTRRILHASV 276
>gi|403417441|emb|CCM04141.1| predicted protein [Fibroporia radiculosa]
Length = 543
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 60/90 (66%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
EL Y+ LN+ LP I+++AWSPV +SARF C +R+YKY+F GLD+ AM AA L
Sbjct: 214 ELRYVSQLNHVLPPTIRIIAWSPVAPDFSARFSCRYRHYKYFFSPRGLDLAAMQDAASRL 273
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
VG HDFRNLCK++ + +F R + A +
Sbjct: 274 VGEHDFRNLCKLDPSKQLTSFVRKILSAQI 303
>gi|452983301|gb|EME83059.1| hypothetical protein MYCFIDRAFT_136942 [Pseudocercospora fijiensis
CIRAD86]
Length = 526
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 87/179 (48%), Gaps = 48/179 (26%)
Query: 215 NELPYLKMLNNNLPRDIKVVAW-SPVPEKYSARFDCLFRNYKYWF--------------- 258
+ELPY+++LN LP DI+V+AW + PE +SARF+C R Y+Y+F
Sbjct: 188 DELPYIQLLNRVLPPDIRVLAWCADPPEDFSARFNCKERRYRYFFTNPAFVPLPGCKHKS 247
Query: 259 ----PQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ 313
P G LDI+AM +AA+ G HDFRNLCK++ + +F R + HAG+ VQ
Sbjct: 248 ENERPGEGWLDIEAMDQAAKKYEGLHDFRNLCKVDPSKQIADFSRRIFHAGI----HEVQ 303
Query: 314 FNDIKEVVDSEPS-----------------------FKKGQGNEKPEIIQQLVDIEKYP 349
V S P F GQG E P I+ +L+DI K P
Sbjct: 304 SQGGSVVDPSSPKLFYFEVRGSAFLWHQVRHLVAVLFLVGQGYESPSIVDELLDIGKTP 362
>gi|358338575|dbj|GAA57020.1| tRNA pseudouridine synthase 3, partial [Clonorchis sinensis]
Length = 368
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 101/216 (46%), Gaps = 47/216 (21%)
Query: 196 VVTLKIRSKLTSPGEESDDN-------------ELPYLKMLNNNLPRDIKVVAWSPVPEK 242
VV+L +RS L S DD+ EL Y+ +LN LP DI+++AWSPV
Sbjct: 67 VVSLVVRSALVSGLGIVDDSGTAINERPSIPDVELDYVFLLNKLLPPDIRILAWSPVGAD 126
Query: 243 YSAR-----------FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
+SAR F C R+Y Y+ P +GLDI M +AA+ L GTHDFRN C +N+ +
Sbjct: 127 FSARYSVFFFYNCLRFTCCQRSYTYFIPCSGLDITMMAEAAKRLEGTHDFRNFCSINLEH 186
Query: 292 GVVNFKRLV-----------------THAGVTSAWQNVQFNDIKEVVDSEPSFKKGQGNE 334
+ F R + T ++ ++ ++ +V + G+G E
Sbjct: 187 ELPVFVRRIDSVLVRLEDTSVMCDPTTMCEISITGSGFLYHQVRCIVALLVTI--GRGYE 244
Query: 335 KPEIIQQLVDIEKYPRI----KSAQFPWSSTGATTP 366
P +I L+DIEK P +A +P GA P
Sbjct: 245 SPSLIDDLLDIEKTPAKPQYQMAADYPLILMGAEYP 280
>gi|328873128|gb|EGG21495.1| tRNA pseudouridylate synthase [Dictyostelium fasciculatum]
Length = 510
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E PY++MLN LP I+V+AW+PVP ++ARF L+R YKY+F AGLDI+AM +A +
Sbjct: 202 EYPYVRMLNGVLPPYIRVLAWTPVPFHFNARFSTLYRTYKYYFNPAGLDIEAMKEAGNHF 261
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLV 300
+G+HDF N CK+++ V +F R++
Sbjct: 262 LGSHDFSNFCKIDL-EAVKSFTRVI 285
>gi|440803221|gb|ELR24130.1| tRNA pseudouridine synthase A, putative [Acanthamoeba castellanii
str. Neff]
Length = 488
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 24/163 (14%)
Query: 207 SPGEESD--DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLD 264
+P + SD E+PYLKM+N+ LP DI+V+AW+ VP+ +SARF R YKY+F L
Sbjct: 189 TPLDTSDPRKEEMPYLKMINSALPPDIQVLAWTTVPKDFSARFSTKHRTYKYFFLAENLQ 248
Query: 265 IDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLV-------THAGV------------ 305
++ M +AA+ + G HDFR+ CKM+V N V NF R + +GV
Sbjct: 249 LERMREAAKKIEGEHDFRHFCKMDVVN-VHNFVRTIYSFDIAPAESGVVPGVAEGSMYTM 307
Query: 306 TSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKY 348
T Q ++ ++ + + F G G E+P ++ +L+D+ K+
Sbjct: 308 TICGQAFLWHQVRMM--AAILFLVGSGQEEPTVVDELLDVAKF 348
>gi|254583638|ref|XP_002497387.1| ZYRO0F04334p [Zygosaccharomyces rouxii]
gi|238940280|emb|CAR28454.1| ZYRO0F04334p [Zygosaccharomyces rouxii]
Length = 431
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 18/170 (10%)
Query: 196 VVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKVVAWSPVP-EKYSARFDCLF 251
V++L++RS L+ ++ +D EL Y ++LN+ LP DIK+ A P E + AR+ C +
Sbjct: 148 VISLEVRSNLSDEEQKDPSNDTRELQYAQILNHLLPEDIKISAMCLRPPEGFDARYSCEY 207
Query: 252 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQN 311
R+YKY F GL +D M KAA G HDFRN CK++ + N+ R + + + N
Sbjct: 208 RHYKYLFSGKGLMLDRMQKAAALYHGEHDFRNFCKLDGSKQITNYTRNILGSEIQHISDN 267
Query: 312 VQFNDIKEVVDS-----------EPSFKKGQGNEKPEIIQQLVDIEKYPR 350
+ D+ V S F GQG E+P +I L+D++K P+
Sbjct: 268 MYCFDL---VGSAFLWHQVRCMMAILFLVGQGLEEPSVITNLLDVDKTPQ 314
>gi|443900339|dbj|GAC77665.1| pseudouridylate synthase [Pseudozyma antarctica T-34]
Length = 654
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 73/135 (54%), Gaps = 29/135 (21%)
Query: 213 DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG---------- 262
+D ELPY+++LN LP I++ AWSPV +S+RFDC++R+YKY+FP AG
Sbjct: 237 EDTELPYVQILNRILPPTIRIHAWSPVRADFSSRFDCVYRHYKYFFP-AGPPSLLLAQSS 295
Query: 263 -------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG---VT 306
LDI M AA LVG HDFRNLCK++ + N++R + V+
Sbjct: 296 CSSSAIAEAASTRLDIGRMRDAAARLVGEHDFRNLCKIDASKQITNYRRRIDGVSIDRVS 355
Query: 307 SAW--QNVQFNDIKE 319
S W Q ND E
Sbjct: 356 SHWPTQPSNINDTPE 370
>gi|242247089|ref|NP_001156050.1| transcription initiation factor TFIID subunit 8-like [Acyrthosiphon
pisum]
gi|239790250|dbj|BAH71698.1| ACYPI000342 [Acyrthosiphon pisum]
Length = 282
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 78 TSVEDCYQRNWYKRAVTSVIGL-------VIKEVGGLSHDFCELANRQQPMLADVLLALI 130
T+V N ++ A S + V+ ++G S + E+A R +P+ ADV++ LI
Sbjct: 12 TTVAGILMENGFQAAEPSAMETLVEMLFSVLSQMGNSSRRYAEVAGRLEPLGADVMMGLI 71
Query: 131 ELGI--PIHGLDTYAKRPMRTVFPPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDP 188
++G+ L YAKR R V P PS QP+ S LQAG + PHP ++P Y+P FPDP
Sbjct: 72 DMGMFKNASSLLAYAKRSNRAVLPSPVPSVQPRQTSNLQAGTRLPHPSYMPSYMPAFPDP 131
Query: 189 HAYIRTPV 196
HAYIRTP
Sbjct: 132 HAYIRTPT 139
>gi|409043129|gb|EKM52612.1| hypothetical protein PHACADRAFT_211852 [Phanerochaete carnosa
HHB-10118-sp]
Length = 548
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 212 SDDN-ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
SD+N EL Y+ LNN LP I+V+AWSPV E +SAR++C +R+YKY+F GL+ AM
Sbjct: 224 SDNNDELKYVSSLNNILPPSIRVLAWSPVSEDFSARYNCRYRHYKYFFLSRGLNTKAMCD 283
Query: 271 AAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
A+ LVG HDFRNL K++ + F+R + A +
Sbjct: 284 GAERLVGEHDFRNLHKLDPAKQLTTFRRRILRAEI 318
>gi|380477720|emb|CCF43995.1| tRNA pseudouridine synthase A [Colletotrichum higginsianum]
Length = 482
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 94/196 (47%), Gaps = 54/196 (27%)
Query: 208 PGEESDD--NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWFPQAG-- 262
P +E DD +E+PY+K+LN LP DI+V+AW P P +SARF C R Y+Y+F Q
Sbjct: 126 PEKEWDDIEDEIPYVKVLNRLLPDDIRVIAWCPAPPPGFSARFSCEERQYRYFFTQPAFT 185
Query: 263 -------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA 303
LDI+AM++AA+ VG HDFRN CK++ + +F+R + A
Sbjct: 186 PTAVTATDGAPPDGLREGYLDIEAMNEAARRFVGDHDFRNFCKVDGSKQITSFERRMYEA 245
Query: 304 GVTSAWQNVQ------FNDIKEVVDSEPS-----------------------FKKGQGNE 334
GV Q+V D + D P F GQ E
Sbjct: 246 GVEEX-QDVGSVLPYLGRDAADGNDKLPRVYSFNIRGTAFLWHQIRHMVTILFLVGQRLE 304
Query: 335 KPEIIQQLVDIEKYPR 350
P++I +L+D+EK PR
Sbjct: 305 GPDVITRLLDVEKTPR 320
>gi|344301779|gb|EGW32084.1| hypothetical protein SPAPADRAFT_61166 [Spathaspora passalidarum
NRRL Y-27907]
Length = 411
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 95/174 (54%), Gaps = 26/174 (14%)
Query: 196 VVTLKIRSKLTSPGEESDDN----ELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCL 250
V++L +RS LT P E++D + E+ Y +LN+ LP DI++ A S P K+ ARF C
Sbjct: 113 VISLNVRSSLT-PEEQADSSNDVKEVKYATILNSLLPPDIRITAISLRPPPKFDARFSCE 171
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT---- 306
R+YKY F + LDIDAM++AAQ GTHDFRN CK++ + ++R + A +
Sbjct: 172 SRHYKYLFLKQQLDIDAMNQAAQLYEGTHDFRNFCKVDGSKQISRYERDIYSAKIMPVDG 231
Query: 307 -----------SAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
SA+ Q + V+ F GQG E I+ L+D++K+P
Sbjct: 232 IPDMYCFDLKGSAFLWHQVRCMVAVL-----FLVGQGLEPVSIVSDLMDVDKFP 280
>gi|195456724|ref|XP_002075259.1| GK17025 [Drosophila willistoni]
gi|194171344|gb|EDW86245.1| GK17025 [Drosophila willistoni]
Length = 321
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 64/104 (61%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ +I E+G +H++CEL+ R P + DV LALI +GI I L+ + +R T P
Sbjct: 43 LTQMLQALIVEIGNSAHNYCELSGRTLPTVGDVSLALINMGINISSLEPHLRRETHTPIP 102
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
Q + LS+LQAG K HP ++P Y P PDPHAYIRTP
Sbjct: 103 LPPQQMQQRQLSLLQAGSKSSHPHYVPSYFPAMPDPHAYIRTPT 146
>gi|154341677|ref|XP_001566790.1| putative pseudouridine synthase A-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134064115|emb|CAM40310.1| putative pseudouridine synthase A-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 499
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 12/140 (8%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLV 276
L Y MLNN LP I++V + V +++ ARF C+ R Y+Y+F GL++ AM +AA + +
Sbjct: 144 LDYCSMLNNVLPSTIRIVGCALVDDRFDARFSCVHRTYRYYFCHRGLNLAAMQEAAAFFL 203
Query: 277 GTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDS-----------EP 325
GTH+FRN C+M+V N V NF R V G+ + + + E+ + E
Sbjct: 204 GTHNFRNFCQMDVVN-VSNFTRTVLSVGLHPSEELPELISYLEITANSFLYHQIRCTMEV 262
Query: 326 SFKKGQGNEKPEIIQQLVDI 345
F G+G E P ++Q ++++
Sbjct: 263 LFLVGRGLEAPSVVQTMLEL 282
>gi|72390247|ref|XP_845418.1| pseudouridine synthase A-like protein [Trypanosoma brucei TREU927]
gi|62360588|gb|AAX81000.1| pseudouridine synthase A-like protein, putative [Trypanosoma
brucei]
gi|70801953|gb|AAZ11859.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 428
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 79/141 (56%), Gaps = 16/141 (11%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLV 276
L Y + LNN LP I++V WS V + ARF C R Y+Y+F GL+++AM KA YL
Sbjct: 109 LDYCEKLNNVLPPTIRIVGWSYVNADFDARFSCTGRTYRYYFCNRGLNLEAMRKAVGYLK 168
Query: 277 GTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA-------------WQNVQFNDIKEVVDS 323
G H+FRN CK +V N V N++R V HA + + + +N I+ +
Sbjct: 169 GVHNFRNFCKTDVVN-VNNYERHVRHADIVGSDMLPDLVSYFEIEANSFLYNQIRCTM-- 225
Query: 324 EPSFKKGQGNEKPEIIQQLVD 344
E F G+ E+PE+++QL+D
Sbjct: 226 EVLFLVGRCLEEPEVVKQLLD 246
>gi|261328820|emb|CBH11798.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 458
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 79/141 (56%), Gaps = 16/141 (11%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLV 276
L Y + LNN LP I++V WS V + ARF C R Y+Y+F GL+++AM KA YL
Sbjct: 139 LDYCEKLNNVLPPTIRIVGWSYVNADFDARFSCTGRTYRYYFCNRGLNLEAMRKAVGYLK 198
Query: 277 GTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA-------------WQNVQFNDIKEVVDS 323
G H+FRN CK +V N V N++R V HA + + + +N I+ +
Sbjct: 199 GVHNFRNFCKTDVVN-VNNYERHVRHADIVGSEMLPDLVSYFEIEANSFLYNQIRCTM-- 255
Query: 324 EPSFKKGQGNEKPEIIQQLVD 344
E F G+ E+PE+++QL+D
Sbjct: 256 EVLFLVGRCLEEPEVVKQLLD 276
>gi|255938179|ref|XP_002559860.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584480|emb|CAP92522.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 548
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 51/193 (26%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNY 254
V+ L++R+ +E+ Y+ +LN LP DI+V+AW P P + ARF C R Y
Sbjct: 205 VIGLRVRT-----------DEMNYINVLNRVLPEDIRVLAWCPNPPPGFDARFSCRERRY 253
Query: 255 KYWF------PQAG----------------------LDIDAMHKAAQYLVGTHDFRNLCK 286
KY+F P G LDI+AM +AA++ G+HDFRN CK
Sbjct: 254 KYFFTNPAFSPTPGSIGFQNRAQNGNGPRAEFREGWLDIEAMREAAKHFEGSHDFRNFCK 313
Query: 287 MNVGNGVVNFKRLVTHAGVTSAWQNVQFN---------DIKEVVDSEPSFKKGQGNEKPE 337
++ + NF+R++ H+ S Q FN ++ +V F GQG E P
Sbjct: 314 LDTNKQIDNFERIIHHSISQSIPQVYSFNLHGSAFLWHQVRHMV--AILFLVGQGLESPS 371
Query: 338 IIQQLVDIEKYPR 350
I+ +L+D+ K PR
Sbjct: 372 IVPELLDVAKNPR 384
>gi|119490947|ref|XP_001263134.1| pseudouridylate synthase 3 [Neosartorya fischeri NRRL 181]
gi|119411294|gb|EAW21237.1| pseudouridylate synthase 3 [Neosartorya fischeri NRRL 181]
Length = 610
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 68/132 (51%), Gaps = 35/132 (26%)
Query: 209 GEESDD------NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQA 261
G +DD +E+PY+ MLN LP DI+++AW P P + ARF C R YKY+F Q
Sbjct: 228 GAHADDTWDDIADEIPYISMLNRVLPDDIRILAWCPNPPPGFDARFSCRERQYKYFFTQP 287
Query: 262 G----------------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 293
LDIDAM +AA+Y G HDFRN CK++ +
Sbjct: 288 AFSPTPGPLGFAMRGSGDKNASAQLREGWLDIDAMREAARYFEGVHDFRNFCKLDTSKQI 347
Query: 294 VNFKRLVTHAGV 305
NF+R++ HAG+
Sbjct: 348 ENFERIIYHAGI 359
>gi|365983330|ref|XP_003668498.1| hypothetical protein NDAI_0B02200 [Naumovozyma dairenensis CBS 421]
gi|343767265|emb|CCD23255.1| hypothetical protein NDAI_0B02200 [Naumovozyma dairenensis CBS 421]
Length = 439
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 20/173 (11%)
Query: 194 TPVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFD 248
+ V++LK+RS LT + E+D E+ Y+ +LN LP DI+V V P PE + ARF
Sbjct: 148 SQVISLKVRSNLTDEEQKRPENDPREIRYVHILNQLLPDDIRVSAVCLRP-PEGFDARFS 206
Query: 249 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA 308
C R+YKY F GLDI M +A+ G HDFRN CK++ + N +R + A +
Sbjct: 207 CDSRHYKYLFEADGLDISKMKEASSKYEGDHDFRNFCKLDGSKQITNHRRTIISAKILHV 266
Query: 309 WQNVQFNDIKEVVDSEPSFKK-----------GQGNEKPEIIQQLVDIEKYPR 350
N+ D+ V + + GQG E+ +I+ ++DIEK P+
Sbjct: 267 EGNIYCFDL---VGRAFLWHQVRCMMANLLLVGQGLEEVSLIEDMLDIEKTPQ 316
>gi|395832351|ref|XP_003789235.1| PREDICTED: transcription initiation factor TFIID subunit 8
[Otolemur garnettii]
Length = 310
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|328350038|emb|CCA36438.1| pseudouridylate synthase [Komagataella pastoris CBS 7435]
Length = 422
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 32/178 (17%)
Query: 196 VVTLKIRSKLTSPGEESDDN---ELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V+ L +RS+LT ES +N EL Y+ +LN LP DI++ V P P+ + ARF C
Sbjct: 116 VIGLNVRSRLTPEELESPENDIKELDYINILNQLLPSDIRIHGVCLRP-PKGFDARFSCR 174
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA------- 303
R+YKY F GLD+++M KAA G HDFRN CK++ + N+ R V +
Sbjct: 175 GRHYKYVFQDEGLDLESMKKAAPMFEGVHDFRNFCKVDGAKQMTNYTRAVRSSQILPLEG 234
Query: 304 ----------GVTSAWQNVQ-FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
G W V+ I ++ GQG E P+I+ +L+DI+ +P+
Sbjct: 235 HPGYYVFDLKGTAFLWHQVRCMVAILLMI--------GQGFESPDIVSKLLDIQSHPQ 284
>gi|332234239|ref|XP_003266318.1| PREDICTED: transcription initiation factor TFIID subunit 8 isoform
1 [Nomascus leucogenys]
gi|426353143|ref|XP_004044057.1| PREDICTED: transcription initiation factor TFIID subunit 8 isoform
1 [Gorilla gorilla gorilla]
Length = 307
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|254565011|ref|XP_002489616.1| Non-essential tRNA:pseudouridine synthase [Komagataella pastoris
GS115]
gi|238029412|emb|CAY67335.1| Non-essential tRNA:pseudouridine synthase [Komagataella pastoris
GS115]
Length = 438
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 32/178 (17%)
Query: 196 VVTLKIRSKLTSPGEESDDN---ELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V+ L +RS+LT ES +N EL Y+ +LN LP DI++ V P P+ + ARF C
Sbjct: 132 VIGLNVRSRLTPEELESPENDIKELDYINILNQLLPSDIRIHGVCLRP-PKGFDARFSCR 190
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA------- 303
R+YKY F GLD+++M KAA G HDFRN CK++ + N+ R V +
Sbjct: 191 GRHYKYVFQDEGLDLESMKKAAPMFEGVHDFRNFCKVDGAKQMTNYTRAVRSSQILPLEG 250
Query: 304 ----------GVTSAWQNVQ-FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
G W V+ I ++ GQG E P+I+ +L+DI+ +P+
Sbjct: 251 HPGYYVFDLKGTAFLWHQVRCMVAILLMI--------GQGFESPDIVSKLLDIQSHPQ 300
>gi|104485446|ref|NP_612639.2| transcription initiation factor TFIID subunit 8 [Homo sapiens]
gi|114607434|ref|XP_518472.2| PREDICTED: transcription initiation factor TFIID subunit 8 isoform
2 [Pan troglodytes]
gi|296198153|ref|XP_002746583.1| PREDICTED: transcription initiation factor TFIID subunit 8
[Callithrix jacchus]
gi|297678123|ref|XP_002816932.1| PREDICTED: transcription initiation factor TFIID subunit 8 [Pongo
abelii]
gi|397526891|ref|XP_003833348.1| PREDICTED: transcription initiation factor TFIID subunit 8 [Pan
paniscus]
gi|402866965|ref|XP_003897639.1| PREDICTED: transcription initiation factor TFIID subunit 8 [Papio
anubis]
gi|74723384|sp|Q7Z7C8.1|TAF8_HUMAN RecName: Full=Transcription initiation factor TFIID subunit 8;
AltName: Full=Protein taube nuss; AltName:
Full=TBP-associated factor 43 kDa; AltName:
Full=TBP-associated factor 8; AltName:
Full=Transcription initiation factor TFIID 43 kDa
subunit; Short=TAFII-43; Short=TAFII43; Short=hTAFII43
gi|31323620|gb|AAP47094.1|AF465841_1 TBP-associated factor TAFII43 [Homo sapiens]
gi|380809616|gb|AFE76683.1| transcription initiation factor TFIID subunit 8 [Macaca mulatta]
gi|410330619|gb|JAA34256.1| TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated
factor, 43kDa [Pan troglodytes]
Length = 310
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|348576278|ref|XP_003473914.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Cavia porcellus]
Length = 307
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|440298431|gb|ELP91067.1| tRNA pseudouridine synthase, putative [Entamoeba invadens IP1]
Length = 364
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 22/169 (13%)
Query: 196 VVTLKIRSKLTSP--GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
V+ L +RS L + D + Y +M+N+ LP DI+ + W VP+ +++RF CL R
Sbjct: 112 VIDLWVRSSLKTDIIDYTQHDGDYDYCRMINSTLPVDIRCLGWCGVPDDFNSRFSCLSRT 171
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRL------VTH----- 302
Y Y+F +G D++AM +AAQY VG HDF N CK + N K L VTH
Sbjct: 172 YHYYFDPSGYDVEAMKQAAQYFVGEHDFTNFCKKDPAVDHCNRKVLSFEIEPVTHLSRFV 231
Query: 303 -AGVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
G W V++ F G G + P+ I+ L+D+ + +
Sbjct: 232 VKGTAFLWHQVRYM-------VGALFLVGSGTD-PKTIKDLLDVNNFTK 272
>gi|354487862|ref|XP_003506090.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Cricetulus griseus]
gi|344250709|gb|EGW06813.1| Transcription initiation factor TFIID subunit 8 [Cricetulus
griseus]
Length = 308
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 59 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 118
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 119 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 162
>gi|157816919|ref|NP_001101667.1| transcription initiation factor TFIID subunit 8 [Rattus norvegicus]
gi|149069444|gb|EDM18885.1| rCG43696, isoform CRA_b [Rattus norvegicus]
Length = 308
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 59 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 118
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 119 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 162
>gi|111601403|gb|AAI19679.1| TAF8 protein [Homo sapiens]
gi|111601406|gb|AAI19680.1| TAF8 protein [Homo sapiens]
Length = 311
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|351707918|gb|EHB10837.1| Transcription initiation factor TFIID subunit 8 [Heterocephalus
glaber]
Length = 310
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|344263760|ref|XP_003403964.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Loxodonta africana]
Length = 307
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|389615318|dbj|BAM20640.1| TBP-associated factor 8 [Papilio polytes]
Length = 240
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 64/104 (61%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T + E+G + FCEL+ R +P+L D+++ L+ +GI I G++ YA RP R V
Sbjct: 6 LTEMXQCFFTELGNSARGFCELSGRVEPVLNDIVMGLMNMGISIQGIEQYAARPNRHVIQ 65
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
P +T P+ ++L AG K PHIP +LP PDPHAYIRTP
Sbjct: 66 PPQQATAPRTPAMLSAGAKAKPAPHIPFHLPPLPDPHAYIRTPT 109
>gi|281345743|gb|EFB21327.1| hypothetical protein PANDA_002452 [Ailuropoda melanoleuca]
Length = 297
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 51 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 110
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 111 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 154
>gi|345778765|ref|XP_538919.3| PREDICTED: transcription initiation factor TFIID subunit 8 isoform
2 [Canis lupus familiaris]
Length = 307
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|301757406|ref|XP_002914532.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Ailuropoda melanoleuca]
Length = 307
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|410959172|ref|XP_003986186.1| PREDICTED: transcription initiation factor TFIID subunit 8 [Felis
catus]
Length = 307
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|342181526|emb|CCC91005.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 446
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDA 267
P +E+ L Y MLNN LP I++V W+ V + + ARF C+ R Y+Y+F GL+++A
Sbjct: 118 PADENQKQPLDYCAMLNNVLPPTIRIVGWAYVEDCFDARFSCVGRTYRYYFCHQGLNLEA 177
Query: 268 MHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA 308
M +A YL G H+FR+ CK +V N V N++R V HA + ++
Sbjct: 178 MREAVGYLKGVHNFRSFCKTDVVN-VSNYERHVRHASIVTS 217
>gi|401425633|ref|XP_003877301.1| putative pseudouridine synthase A-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493546|emb|CBZ28834.1| putative pseudouridine synthase A-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 499
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 12/140 (8%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLV 276
L Y MLNN LP I++V + V + + ARF C+ R Y+Y+F GL++ AM +AA + +
Sbjct: 144 LDYCSMLNNVLPSTIRIVGCALVDDAFDARFSCVHRTYRYYFFHRGLNLAAMQEAAAFFL 203
Query: 277 GTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEV-----------VDSEP 325
GTH+FRN CKM+V N V NF R V G+ + + + E+ E
Sbjct: 204 GTHNFRNFCKMDVVN-VSNFVRTVFSVGLYPSEELPELISYLEIRANSFLYHQIRCTMEV 262
Query: 326 SFKKGQGNEKPEIIQQLVDI 345
F G+G E P ++Q L+++
Sbjct: 263 LFLVGRGLEAPSVVQTLLEL 282
>gi|323452423|gb|EGB08297.1| hypothetical protein AURANDRAFT_11850, partial [Aureococcus
anophagefferens]
Length = 266
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 20/168 (11%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
VV L++RS + GE D Y+ MLN LP D++ +AW PV ++SARF C R Y+
Sbjct: 84 VVGLRVRSAARA-GEPLD-----YVNMLNRVLPDDVRALAWRPVVPEFSARFSCASRTYR 137
Query: 256 YWFPQ------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW 309
Y+FP A D+ AM AA LVG HDFRN CKM+V + V NF+R+V A V
Sbjct: 138 YFFPATSPNTGAAYDVPAMAAAAARLVGDHDFRNFCKMDVLH-VKNFRRVVYAADVRKTG 196
Query: 310 QNVQFND-----IKEVVDSEPS--FKKGQGNEKPEIIQQLVDIEKYPR 350
F + +V S + F G+G E P ++ L+D+ + PR
Sbjct: 197 DGFFFEIHGQAFLWHMVRSLVAVLFLVGEGLEPPAVVDALLDVARTPR 244
>gi|11528498|ref|NP_071298.1| transcription initiation factor TFIID subunit 8 [Mus musculus]
gi|81881848|sp|Q9EQH4.1|TAF8_MOUSE RecName: Full=Transcription initiation factor TFIID subunit 8;
AltName: Full=Protein taube nuss; AltName:
Full=TBP-associated factor 8
gi|9886977|gb|AAG01682.1|AF222802_1 taube nuss [Mus musculus]
gi|26337083|dbj|BAC32225.1| unnamed protein product [Mus musculus]
gi|148691619|gb|EDL23566.1| taube nuss, isoform CRA_b [Mus musculus]
Length = 308
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 59 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 118
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 119 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 162
>gi|291396196|ref|XP_002714721.1| PREDICTED: TBP-associated factor 8 [Oryctolagus cuniculus]
Length = 307
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|367054792|ref|XP_003657774.1| hypothetical protein THITE_75432 [Thielavia terrestris NRRL 8126]
gi|347005040|gb|AEO71438.1| hypothetical protein THITE_75432 [Thielavia terrestris NRRL 8126]
Length = 614
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 86/190 (45%), Gaps = 54/190 (28%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQ------------- 260
+E+ Y ++LN LP DI+V+AW+P +P +SARF C R Y+Y+F Q
Sbjct: 231 DEINYPRVLNRLLPPDIRVLAWAPTLPPGFSARFSCWERQYRYFFTQPAFTPLPASLDPD 290
Query: 261 ------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA------GVTSA 308
LDIDAM +AA+ G HDFRN CK++ + FKR V A G SA
Sbjct: 291 GTRGREGWLDIDAMRRAAKLFEGVHDFRNFCKVDGAKQITTFKRRVFEADVVEVEGTGSA 350
Query: 309 WQNVQFNDIK-----EVVDSEPS-----------------------FKKGQGNEKPEIIQ 340
+ D + E + P F GQG EKP II
Sbjct: 351 LPYLALPDFRPEKLAEQGGTHPKVYYFHVRGSAFLWHQIRHMVAILFLVGQGLEKPSIIT 410
Query: 341 QLVDIEKYPR 350
L+D+EK PR
Sbjct: 411 DLLDVEKNPR 420
>gi|449271601|gb|EMC81885.1| Transcription initiation factor TFIID subunit 8, partial [Columba
livia]
Length = 290
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 44 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVETLPAYAKRSQRMVIT 103
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 104 APPV--TNQPVTPKALTAGQNKPHPPHIPGHFPEFPDPHTYIKTPT 147
>gi|155372121|ref|NP_001094670.1| transcription initiation factor TFIID subunit 8 [Bos taurus]
gi|166225540|sp|A7MAZ4.1|TAF8_BOVIN RecName: Full=Transcription initiation factor TFIID subunit 8;
AltName: Full=TBP-associated factor 8
gi|154425553|gb|AAI51256.1| TAF8 protein [Bos taurus]
gi|296474438|tpg|DAA16553.1| TPA: transcription initiation factor TFIID subunit 8 [Bos taurus]
Length = 310
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|26345424|dbj|BAC36363.1| unnamed protein product [Mus musculus]
Length = 308
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 59 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 118
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 119 APPV--TNQPLTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 162
>gi|26352151|dbj|BAC39712.1| unnamed protein product [Mus musculus]
Length = 305
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 59 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 118
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 119 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 162
>gi|194223502|ref|XP_001496879.2| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Equus caballus]
Length = 307
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|18376136|emb|CAD21201.1| related to pseudouridine synthase 3 [Neurospora crassa]
Length = 669
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 87/206 (42%), Gaps = 82/206 (39%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF--------------- 258
+E+PY ++LN LP DI+++AW+P +P +SARF C R Y+Y+F
Sbjct: 270 DEIPYCRVLNRLLPPDIRIMAWAPDLPPNFSARFSCRERQYRYFFTQPAFAPMPSTLEPP 329
Query: 259 ----------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA 308
Q LDID M KAA+ G HDFRN CK++ G + NF R V +
Sbjct: 330 LASSGHKSGGKQGWLDIDMMRKAAKMFEGVHDFRNFCKIDPGKQITNFSRRVFES----- 384
Query: 309 WQNVQFNDIKEVVDSE--------PSFKK------------------------------- 329
DI EV D E P F+
Sbjct: 385 -------DIVEVKDLESDLPYLGLPEFQPPAGSDGPHPKVYYFHVRGSAFLWHQIRHMVA 437
Query: 330 -----GQGNEKPEIIQQLVDIEKYPR 350
GQG E P I+QQL+D+EK PR
Sbjct: 438 VLFLVGQGLEPPSIVQQLLDVEKNPR 463
>gi|355723145|gb|AES07797.1| TAF8 RNA polymerase II, TATA box binding protein -associated
factor, 43kDa [Mustela putorius furo]
Length = 259
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 60 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 119
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 120 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 163
>gi|398019410|ref|XP_003862869.1| pseudouridine synthase A-like protein, putative [Leishmania
donovani]
gi|322501100|emb|CBZ36178.1| pseudouridine synthase A-like protein, putative [Leishmania
donovani]
Length = 499
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 22/144 (15%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLV 276
L Y MLNN LP I++V + V + + ARF C+ R Y+Y+F GL+++AM +AA + +
Sbjct: 144 LDYCSMLNNVLPSTIRIVGCALVDDAFDARFSCVHRTYRYYFFHRGLNLEAMQEAAAFFL 203
Query: 277 GTHDFRNLCKMNVGNGVVNFKRLVTHAGV----------------TSAWQNVQFNDIKEV 320
GTH+FRN CKM+V N V NF R V G+ +++ Q I EV
Sbjct: 204 GTHNFRNFCKMDVVN-VSNFVRTVFSVGLHPSEALPELISYLEIRANSFLYHQIRCIMEV 262
Query: 321 VDSEPSFKKGQGNEKPEIIQQLVD 344
+ F G+G E P ++Q L++
Sbjct: 263 L-----FLVGRGLEVPSVVQTLLE 281
>gi|426251095|ref|XP_004019267.1| PREDICTED: transcription initiation factor TFIID subunit 8 [Ovis
aries]
Length = 328
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 79 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 138
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 139 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 182
>gi|355748559|gb|EHH53042.1| hypothetical protein EGM_13600, partial [Macaca fascicularis]
Length = 337
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|258563566|ref|XP_002582528.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237908035|gb|EEP82436.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 615
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 99/230 (43%), Gaps = 71/230 (30%)
Query: 192 IRTPVVTLKIRSKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFD 248
+ +P L I E+ DD +ELPY++MLN LP DI+++AW P P + ARF
Sbjct: 222 VESPFGGLGIDVSELEVEEKWDDVADELPYIQMLNGVLPEDIRILAWCPRPPPDFDARFS 281
Query: 249 CLFRNYKYWFPQAG--------------------------LDIDAMHKAAQYLVGTHDFR 282
C R Y+Y+F Q LDIDAM + A+ +G+HDFR
Sbjct: 282 CRERRYRYFFTQPAFCPTPGPLGFVKRPGDTPGSKMREGWLDIDAMREGAKRYIGSHDFR 341
Query: 283 NLCKMNVGNGVVNFKRLVTHAGVTS-----------AWQNVQF--NDIKEVVDS----EP 325
N CK++ + NF R ++HA + A Q Q N +E+ DS +P
Sbjct: 342 NFCKVDASKQITNFVRKISHADIQVLDAKNLPPAFLAQQGFQQYENVDRELRDSSDVQDP 401
Query: 326 SFKK-------------------------GQGNEKPEIIQQLVDIEKYPR 350
+ K GQG E P I+ QL+D+ PR
Sbjct: 402 ALKVYYFSVHGSAFLWHQVRHMVAVLFLIGQGLEPPSIVSQLLDVSTNPR 451
>gi|146093784|ref|XP_001467003.1| putative pseudouridine synthase A-like protein [Leishmania infantum
JPCM5]
gi|134071367|emb|CAM70054.1| putative pseudouridine synthase A-like protein [Leishmania infantum
JPCM5]
Length = 499
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 22/144 (15%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLV 276
L Y MLNN LP I++V + V + + ARF C+ R Y+Y+F GL+++AM +AA + +
Sbjct: 144 LDYCSMLNNVLPSTIRIVGCALVDDTFDARFSCVHRTYRYYFFHRGLNLEAMQEAAAFFL 203
Query: 277 GTHDFRNLCKMNVGNGVVNFKRLVTHAGV----------------TSAWQNVQFNDIKEV 320
GTH+FRN CKM+V N V NF R V G+ +++ Q I EV
Sbjct: 204 GTHNFRNFCKMDVVN-VSNFVRTVFSVGLHPSEALPELISYLEIRANSFLYHQIRCIMEV 262
Query: 321 VDSEPSFKKGQGNEKPEIIQQLVD 344
+ F G+G E P ++Q L++
Sbjct: 263 L-----FLVGRGLEVPSVVQTLLE 281
>gi|121706104|ref|XP_001271315.1| pseudouridylate synthase 3 [Aspergillus clavatus NRRL 1]
gi|119399461|gb|EAW09889.1| pseudouridylate synthase 3 [Aspergillus clavatus NRRL 1]
Length = 604
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 95/221 (42%), Gaps = 77/221 (34%)
Query: 205 LTSPGEESDDN---ELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFRNYKYWFPQ 260
L +P E++ D+ E+PY+ MLN LP DI+++AW P P + ARF C R YKY+F Q
Sbjct: 224 LDAPAEDTWDDIADEIPYISMLNRVLPEDIRILAWCPQPPPGFDARFSCRERQYKYFFTQ 283
Query: 261 AG-----------------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
LDIDAM +AA++ G HDFRN CK++
Sbjct: 284 PAFSPTPGPLGLALQAVDSANKIPAKYREGWLDIDAMREAAKHFEGVHDFRNFCKLDTSK 343
Query: 292 GVVNFKRLVTHAGV---------------------------------TSAWQNVQFN--- 315
+ NF+R++ HA + +A Q FN
Sbjct: 344 QIENFERIIYHADIELVDPKHHPLGYVNQPGFQASENSVVGADTVAQATAAQVYVFNLHG 403
Query: 316 ------DIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
++ +V F GQG E P I+ +L+D+ K PR
Sbjct: 404 SAFLWHQVRHMVSI--LFLVGQGLESPSIVAELLDVSKNPR 442
>gi|406695768|gb|EKC99068.1| pseudouridylate synthase [Trichosporon asahii var. asahii CBS 8904]
Length = 532
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 82/155 (52%), Gaps = 28/155 (18%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF---PQAG---LDIDAMH 269
+L Y ++LN+ LP DI+V+AWSP P + +RF C FR+YKY F P G LD+D M
Sbjct: 232 DLGYPRLLNSVLPDDIRVLAWSPAPTDFDSRFSCDFRHYKYAFHIVPSPGAEPLDLDLMT 291
Query: 270 KAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA---------------GVTSAWQNVQF 314
+AA+ L+G HDFRN CK++ + + KR V A G W V+
Sbjct: 292 EAAKLLLGEHDFRNFCKVDGSKQIESHKRTVLQAYFEKESEGVYIFNLVGNAFLWHQVRH 351
Query: 315 NDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
I V+ F G E P ++ L+D+E++P
Sbjct: 352 --IMAVL-----FLVGSRLEPPSVVTDLMDVERFP 379
>gi|440636881|gb|ELR06800.1| hypothetical protein GMDG_02238 [Geomyces destructans 20631-21]
Length = 628
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 87/207 (42%), Gaps = 84/207 (40%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWFPQAG----------- 262
+ELPY +LN LP DI+++AW P P +SARF C R YKY+F Q
Sbjct: 271 DELPYCHLLNRLLPPDIRILAWCPAPPLGFSARFSCKERQYKYFFTQPAFAPPPENPNIK 330
Query: 263 ------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
LDIDAM +AA Y VG+HDFRN CK++ + NF+R +
Sbjct: 331 STNKNTDVKDGWLDIDAMREAAGYFVGSHDFRNFCKIDGSKQIENFERTMF--------- 381
Query: 311 NVQFNDIKEVVDSEPS-------------------------------------------- 326
F DI EV D+ P+
Sbjct: 382 ---FADILEVDDTTPTLDFVGKKEFLPAASITGSSEQISPKVYTFTLHGSAFLWHQVRCM 438
Query: 327 ----FKKGQGNEKPEIIQQLVDIEKYP 349
F GQG EKP II++L+D+E+ P
Sbjct: 439 VAILFLVGQGLEKPTIIKELLDVERNP 465
>gi|169604989|ref|XP_001795915.1| hypothetical protein SNOG_05510 [Phaeosphaeria nodorum SN15]
gi|160706683|gb|EAT86574.2| hypothetical protein SNOG_05510 [Phaeosphaeria nodorum SN15]
Length = 475
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 86/189 (45%), Gaps = 59/189 (31%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFP-------------- 259
+ELPY+++LN LP DI+V AW P PE +SARF C R YKY+F
Sbjct: 219 DELPYIQLLNRVLPPDIRVYAWCPNPPENFSARFSCKERRYKYFFTNPCFAPVPGSAGTY 278
Query: 260 --------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT----- 306
+ LDI AM A + L+G HDFRN+CK++ + NFKR + +AG+
Sbjct: 279 HTPSSPMREGTLDIAAMQLACESLIGLHDFRNMCKIDASKQLTNFKRRIFYAGIEEVSPL 338
Query: 307 --------------------------SAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQ 340
SA+ Q I ++ F GQ E P ++Q
Sbjct: 339 SVPSYLSHGAIAPPDQPKMYAFVLHGSAFLWHQVRSIVAIL-----FLIGQRLEPPSLVQ 393
Query: 341 QLVDIEKYP 349
QL+DIE P
Sbjct: 394 QLLDIETNP 402
>gi|67525425|ref|XP_660774.1| hypothetical protein AN3170.2 [Aspergillus nidulans FGSC A4]
gi|40744565|gb|EAA63741.1| hypothetical protein AN3170.2 [Aspergillus nidulans FGSC A4]
Length = 625
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 28/131 (21%)
Query: 203 SKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF- 258
++ T E+ DD +ELPY+ +LN LP DI+V+AW P PE + AR+ C R+YKY+F
Sbjct: 245 TRETVADEDWDDIADELPYISLLNKALPEDIRVLAWCPNPPEDFDARYSCRERHYKYFFT 304
Query: 259 --------------PQAG----------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 294
P+ G LDIDAM +AA+Y G HDFRN CK++ +
Sbjct: 305 QPAFSPTPGPLGLLPRKGDAPPKYREGWLDIDAMREAAKYFEGVHDFRNFCKVDTSKQIE 364
Query: 295 NFKRLVTHAGV 305
NF+R++ A +
Sbjct: 365 NFERIIYRADI 375
>gi|74187570|dbj|BAE36731.1| unnamed protein product [Mus musculus]
Length = 265
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 59 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 118
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 119 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 162
>gi|255710543|ref|XP_002551555.1| KLTH0A02222p [Lachancea thermotolerans]
gi|238932932|emb|CAR21113.1| KLTH0A02222p [Lachancea thermotolerans CBS 6340]
Length = 443
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 114/243 (46%), Gaps = 29/243 (11%)
Query: 151 FPPVAPSTQPKPL-----SILQAGVKQPHPPHIPPYLPLFP-----DPHAYIRTPVVTLK 200
+ +A +P PL +IL+A P + P F D V++L
Sbjct: 100 YNGLAIQKEPTPLPTVEGTILEAMNACKLVPSMVPQDYNFSRCGRTDKGVSAMNQVISLH 159
Query: 201 IRSKLT---SPGEESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCLFRNYK 255
+RS LT EE+D E+ Y+ +LN LP DI++ V P P + ARF C +R+Y+
Sbjct: 160 VRSNLTREEQQDEENDGREIDYIHILNQLLPDDIRISAVCLRP-PTNFDARFSCQYRHYR 218
Query: 256 YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFN 315
Y F + GLDI M +AA+ G HDFRN CK++ + N+KR + + + S +++
Sbjct: 219 YLFHKDGLDIKKMEEAARMYEGEHDFRNFCKLDGSKQINNYKRNIERSRIISLSEDIYCL 278
Query: 316 DI--------KEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPRIKSAQFPWSSTGATTPN 367
D+ + F GQG E +++ L+D+ R+K Q P + P
Sbjct: 279 DLIGSAFLWHQVRCMMANLFLIGQGLEDTTLLKDLMDV---ARVK--QKPIYDMASDIPL 333
Query: 368 ELF 370
LF
Sbjct: 334 ILF 336
>gi|401884318|gb|EJT48486.1| pseudouridylate synthase [Trichosporon asahii var. asahii CBS 2479]
Length = 532
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 24/153 (15%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF---PQAG---LDIDAMH 269
+L Y ++LN+ LP DI+V+AWSP P + +RF C FR+YKY F P G LD+D M
Sbjct: 232 DLGYPRLLNSVLPDDIRVLAWSPAPTDFDSRFSCDFRHYKYAFHIVPSPGVEPLDLDLMT 291
Query: 270 KAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNV-------------QFND 316
+AA+ L+G HDFRN CK++ + + KR V A + V Q
Sbjct: 292 EAAKLLLGEHDFRNFCKVDGSKQIESHKRTVLQAYFEKESEGVYIFNLVGNAFLWHQVRH 351
Query: 317 IKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
I V+ F G E P ++ L+D+E++P
Sbjct: 352 IMAVL-----FLVGSRLEPPSVVTDLMDVERFP 379
>gi|85083865|ref|XP_957207.1| hypothetical protein NCU01784 [Neurospora crassa OR74A]
gi|28918294|gb|EAA27971.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 608
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 87/206 (42%), Gaps = 82/206 (39%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF--------------- 258
+E+PY ++LN LP DI+++AW+P +P +SARF C R Y+Y+F
Sbjct: 209 DEIPYCRVLNRLLPPDIRIMAWAPDLPPNFSARFSCRERQYRYFFTQPAFAPMPSTLEPP 268
Query: 259 ----------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA 308
Q LDID M KAA+ G HDFRN CK++ G + NF R V +
Sbjct: 269 LASSGHKSGGKQGWLDIDMMRKAAKMFEGVHDFRNFCKIDPGKQITNFSRRVFES----- 323
Query: 309 WQNVQFNDIKEVVDSE--------PSFKK------------------------------- 329
DI EV D E P F+
Sbjct: 324 -------DIVEVKDLESDLPYLGLPEFQPPAGSDGPHPKVYYFHVRGSAFLWHQIRHMVA 376
Query: 330 -----GQGNEKPEIIQQLVDIEKYPR 350
GQG E P I+QQL+D+EK PR
Sbjct: 377 VLFLVGQGLEPPSIVQQLLDVEKNPR 402
>gi|259485874|tpe|CBF83268.1| TPA: pseudouridylate synthase 3 (AFU_orthologue; AFUA_3G13350)
[Aspergillus nidulans FGSC A4]
Length = 664
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 28/131 (21%)
Query: 203 SKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF- 258
++ T E+ DD +ELPY+ +LN LP DI+V+AW P PE + AR+ C R+YKY+F
Sbjct: 284 TRETVADEDWDDIADELPYISLLNKALPEDIRVLAWCPNPPEDFDARYSCRERHYKYFFT 343
Query: 259 --------------PQAG----------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 294
P+ G LDIDAM +AA+Y G HDFRN CK++ +
Sbjct: 344 QPAFSPTPGPLGLLPRKGDAPPKYREGWLDIDAMREAAKYFEGVHDFRNFCKVDTSKQIE 403
Query: 295 NFKRLVTHAGV 305
NF+R++ A +
Sbjct: 404 NFERIIYRADI 414
>gi|108743218|dbj|BAE95388.1| pseudouridine synthase [Saccharomyces bayanus]
Length = 202
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 82/150 (54%), Gaps = 21/150 (14%)
Query: 216 ELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQ 273
E+PY+++LN LP DI++ V P P + ARF C R+YKY F LDI M KAA
Sbjct: 1 EIPYVQILNQLLPDDIRISAVCLRP-PPGFDARFSCTNRHYKYVFNGKHLDITKMSKAAS 59
Query: 274 YLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG-------------VTSAWQNVQFNDIKEV 320
Y +G +DFRN CK++ + NFKR + A V SA+ Q + +
Sbjct: 60 YFLGENDFRNFCKLDGSKQLTNFKRSIVSAKILPVSDTFYCFDLVGSAFLWHQVRCMMAI 119
Query: 321 VDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
+ F GQ +E+PEI+ +L+DIEK P+
Sbjct: 120 L-----FLVGQTHEEPEIVLRLLDIEKTPQ 144
>gi|148691620|gb|EDL23567.1| taube nuss, isoform CRA_c [Mus musculus]
Length = 259
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 59 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 118
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 119 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 162
>gi|336468412|gb|EGO56575.1| hypothetical protein NEUTE1DRAFT_83903 [Neurospora tetrasperma FGSC
2508]
gi|350289332|gb|EGZ70557.1| pseudouridine synthase [Neurospora tetrasperma FGSC 2509]
Length = 540
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 87/194 (44%), Gaps = 58/194 (29%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF--------------- 258
+E+PY ++LN LP DI+++AW+P +P +SARF C R Y+Y+F
Sbjct: 141 DEIPYCRVLNRLLPPDIRIMAWAPDLPPNFSARFSCRERQYRYFFTQPAFAPMPSTLEPP 200
Query: 259 ----------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT-- 306
Q LDID M KAA+ G HDFRN CK++ G + NF R + + +
Sbjct: 201 LASSGQKSGGKQGWLDIDMMRKAAKMFEGVHDFRNFCKIDPGKQITNFSRRIFESDIVEV 260
Query: 307 ----SAWQNVQFNDIKEVVDSEPSFKK--------------------------GQGNEKP 336
S + + + S+ S K GQG E P
Sbjct: 261 KDLESDLPYLGLPEFQPPAGSDGSHPKVYYFHVRGSAFLWHQIRHMVAVLFLVGQGLEPP 320
Query: 337 EIIQQLVDIEKYPR 350
I+QQL+D+EK PR
Sbjct: 321 SIVQQLLDVEKNPR 334
>gi|224007503|ref|XP_002292711.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971573|gb|EED89907.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 162
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 17/141 (12%)
Query: 222 MLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDF 281
+LNN LP I+++ W PV ++SARF C R Y+Y+FP+ LD+ AM + QY++G HDF
Sbjct: 1 VLNNVLPPSIRILGWCPVSPEFSARFSCGQRTYRYFFPRRNLDLSAMAQGLQYMMGRHDF 60
Query: 282 RNLCKMNV----GNGVV---------NFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPSFK 328
RNLCKMN G V + R + H + Q ++ I+ ++ F
Sbjct: 61 RNLCKMNCEQNEGEHPVIQPTEQSKPSSSRDMCHVEIVG--QAFLWHQIRCIMSI--LFY 116
Query: 329 KGQGNEKPEIIQQLVDIEKYP 349
G+ E P+I+QQL DI+ P
Sbjct: 117 VGRQLETPQIVQQLFDIQTNP 137
>gi|157872401|ref|XP_001684749.1| putative pseudouridine synthase A-like protein [Leishmania major
strain Friedlin]
gi|68127819|emb|CAJ06260.1| putative pseudouridine synthase A-like protein [Leishmania major
strain Friedlin]
Length = 498
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 22/145 (15%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLV 276
L Y MLNN LP I++V + V + + ARF C+ R Y+Y+F GL++ AM +AA + +
Sbjct: 144 LDYCSMLNNVLPSTIRIVGCALVDDAFDARFSCVHRTYRYYFFHRGLNLAAMQEAAAFFL 203
Query: 277 GTHDFRNLCKMNVGNGVVNFKRLVTHAGV----------------TSAWQNVQFNDIKEV 320
GTH+FRN CKM+V N V NF R V G+ +++ Q I EV
Sbjct: 204 GTHNFRNFCKMDVVN-VSNFVRTVFSVGLHPSEALPELISYLEIRANSFLYHQIRCIMEV 262
Query: 321 VDSEPSFKKGQGNEKPEIIQQLVDI 345
+ F G+G E P ++Q L+++
Sbjct: 263 L-----FLVGRGLEVPSVVQTLLEL 282
>gi|149069443|gb|EDM18884.1| rCG43696, isoform CRA_a [Rattus norvegicus]
Length = 269
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 59 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 118
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 119 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 162
>gi|149069445|gb|EDM18886.1| rCG43696, isoform CRA_c [Rattus norvegicus]
Length = 213
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 59 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 118
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 119 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 162
>gi|330804770|ref|XP_003290364.1| hypothetical protein DICPUDRAFT_154861 [Dictyostelium purpureum]
gi|325079531|gb|EGC33127.1| hypothetical protein DICPUDRAFT_154861 [Dictyostelium purpureum]
Length = 449
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E PY+KMLN LP +I+V+ W+P+P +++RF LFR YKY+F +D++ M +A +
Sbjct: 184 EFPYVKMLNGVLPPEIRVLGWAPIPFHFNSRFSTLFRTYKYFFTLNNMDLNLMKEAGNHY 243
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
+G HDF N CKM++ N V +FKR++ +
Sbjct: 244 LGEHDFSNFCKMDIEN-VKSFKRVILEFSI 272
>gi|355561692|gb|EHH18324.1| hypothetical protein EGK_14898, partial [Macaca mulatta]
Length = 337
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|119624485|gb|EAX04080.1| taube nuss homolog (mouse), isoform CRA_b [Homo sapiens]
Length = 338
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|119624483|gb|EAX04078.1| taube nuss homolog (mouse), isoform CRA_a [Homo sapiens]
gi|119624484|gb|EAX04079.1| taube nuss homolog (mouse), isoform CRA_a [Homo sapiens]
Length = 338
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|260942163|ref|XP_002615380.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720]
gi|238850670|gb|EEQ40134.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720]
Length = 447
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 100/221 (45%), Gaps = 36/221 (16%)
Query: 158 TQPKPL-----SILQAGVKQPHPPHIPPYLPLFP-----DPHAYIRTPVVTLKIRSKLTS 207
+P PL ILQA K P P F D V++L +RS L+
Sbjct: 104 NEPTPLPTVEEEILQAMTKAKLVPEADPASCNFSRCGRTDKGVSALNQVISLDVRSALSK 163
Query: 208 ---PGEESDDNELPYLKMLNNNLPRDIKVVA--WSPVPEKYSARFDCLFRNYKYWFPQAG 262
+E D ELPYL +LN LP DI++ A P P ++ARF C +R+YKY F +
Sbjct: 164 EEHADKEKDVKELPYLTILNALLPPDIRITAVCLRP-PPNFNARFSCKYRHYKYLFKKTD 222
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVD 322
LD+D M +AA G HDFRN CK++ + N R V A + F D V D
Sbjct: 223 LDVDLMQEAALKYEGPHDFRNFCKIDGSKQITNHCREVYSARIE------HFKDDFYVFD 276
Query: 323 SEPS--------------FKKGQGNEKPEIIQQLVDIEKYP 349
+ + F GQ E P I+ L+++ K+P
Sbjct: 277 LKGTAFLWHQVRCMVAVLFSVGQKLESPSIVDDLLNVSKFP 317
>gi|389623455|ref|XP_003709381.1| tRNA-pseudouridine synthase [Magnaporthe oryzae 70-15]
gi|351648910|gb|EHA56769.1| tRNA-pseudouridine synthase [Magnaporthe oryzae 70-15]
Length = 694
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 82/194 (42%), Gaps = 58/194 (29%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQ------------ 260
D E+ Y KMLN LP DI+V+AW P P +SAR C R Y+Y+F Q
Sbjct: 310 DKEIKYCKMLNAVLPVDIRVLAWCPNPPPGFSARHSCHERQYRYFFTQPIFSPVPARLDG 369
Query: 261 -------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTS 307
LD+DAM +AA+ G HDFRN CK++ + NFKRL+ A +
Sbjct: 370 VMGYKEPGSTHKDGYLDLDAMREAARLFEGEHDFRNFCKIDASKQISNFKRLIREASIVE 429
Query: 308 AWQNVQFNDIKEVVDSEPS--------------------------------FKKGQGNEK 335
+ + D PS F GQ EK
Sbjct: 430 VPEAASSLPYLDTPDFRPSGEDSQARPKVYYFHVRGSAFLWHQIRHMIAVLFLVGQRLEK 489
Query: 336 PEIIQQLVDIEKYP 349
P I+ +L+DIEKYP
Sbjct: 490 PSIVSELLDIEKYP 503
>gi|16553063|dbj|BAB71460.1| unnamed protein product [Homo sapiens]
Length = 259
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQDRPHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|440469549|gb|ELQ38657.1| hypothetical protein OOU_Y34scaffold00533g41 [Magnaporthe oryzae
Y34]
gi|440485616|gb|ELQ65557.1| hypothetical protein OOW_P131scaffold00480g7 [Magnaporthe oryzae
P131]
Length = 625
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 82/194 (42%), Gaps = 58/194 (29%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQ------------ 260
D E+ Y KMLN LP DI+V+AW P P +SAR C R Y+Y+F Q
Sbjct: 241 DKEIKYCKMLNAVLPVDIRVLAWCPNPPPGFSARHSCHERQYRYFFTQPIFSPVPARLDG 300
Query: 261 -------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTS 307
LD+DAM +AA+ G HDFRN CK++ + NFKRL+ A +
Sbjct: 301 VMGYKEPGSTHKDGYLDLDAMREAARLFEGEHDFRNFCKIDASKQISNFKRLIREASIVE 360
Query: 308 AWQNVQFNDIKEVVDSEPS--------------------------------FKKGQGNEK 335
+ + D PS F GQ EK
Sbjct: 361 VPEAASSLPYLDTPDFRPSGEDSQARPKVYYFHVRGSAFLWHQIRHMIAVLFLVGQRLEK 420
Query: 336 PEIIQQLVDIEKYP 349
P I+ +L+DIEKYP
Sbjct: 421 PSIVSELLDIEKYP 434
>gi|357624160|gb|EHJ75039.1| hypothetical protein KGM_19152 [Danaus plexippus]
Length = 242
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 64/104 (61%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T +I + EVG + +CEL+ R +P+L DV +AL+ +GI I G++ YA RP R V
Sbjct: 6 LTEIIQCFLAEVGNSAKGYCELSGRVEPVLGDVKMALVNMGISIQGIEQYAARPNRHVIQ 65
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
+ P+ ++L AG K PHIP +LP PDPHAYIRTP
Sbjct: 66 APQQAFVPRTPAMLSAGSKAKPAPHIPFHLPPLPDPHAYIRTPT 109
>gi|343425503|emb|CBQ69038.1| related to DEG1-pseudouridine synthase [Sporisorium reilianum SRZ2]
Length = 652
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 32/144 (22%)
Query: 213 DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ------------ 260
+D ELPY+ +LN LP I++ AWSPV +S+RFDC +R+YKY+FP
Sbjct: 205 EDTELPYVSILNRILPPSIRIQAWSPVRSNFSSRFDCTYRHYKYFFPSGPPSIFYPPASS 264
Query: 261 --------------AG---LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA 303
AG LDI M AA+ L+G HDFRNLCK++ + N++R +
Sbjct: 265 TSTASASAGMPSQDAGATRLDIGRMRDAARRLLGEHDFRNLCKVDASKQITNYRRRIDGV 324
Query: 304 G---VTSAWQNVQFNDIKEVVDSE 324
V++ W + + VD +
Sbjct: 325 SIDRVSTHWPSTHCRITDDAVDGK 348
>gi|198468843|ref|XP_001354834.2| GA20122 [Drosophila pseudoobscura pseudoobscura]
gi|198146597|gb|EAL31889.2| GA20122 [Drosophila pseudoobscura pseudoobscura]
Length = 323
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 62/104 (59%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ I E+G +H++CEL+ R + DV +ALI +G I L++Y +R
Sbjct: 43 LTEMLQAFISELGNSAHNYCELSGRTMATVGDVSMALINMGQNIGSLESYLRREQHAPIQ 102
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
TQ + LS+LQAG K HPP++P Y P PDPHAYIRTP
Sbjct: 103 LPPQQTQQRTLSLLQAGTKASHPPYVPSYFPPMPDPHAYIRTPT 146
>gi|66805521|ref|XP_636482.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4]
gi|60464862|gb|EAL62978.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4]
Length = 491
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 74/112 (66%), Gaps = 14/112 (12%)
Query: 213 DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAA 272
DD ELPY+KMLN LP +I+++AW+PVP ++ARF L R YKY+F GLD++ M +A+
Sbjct: 205 DDEELPYIKMLNGVLPPEIRILAWAPVPFHFNARFSTLSRTYKYFFNPNGLDLNLMKEAS 264
Query: 273 QYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSE 324
+ +G H++ N CK++V V +F R++ +QF DI++V +SE
Sbjct: 265 KLYLGEHNYINFCKIDV--NVKSFMRVI-----------LQF-DIEKVENSE 302
>gi|195166878|ref|XP_002024261.1| GL14948 [Drosophila persimilis]
gi|194107634|gb|EDW29677.1| GL14948 [Drosophila persimilis]
Length = 323
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 62/104 (59%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ I E+G +H++CEL+ R + DV +ALI +G I L++Y +R
Sbjct: 43 LTEMLQAFISELGNSAHNYCELSGRTMATVGDVSMALINMGQNIGSLESYLRREQHAPIQ 102
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
TQ + LS+LQAG K HPP++P Y P PDPHAYIRTP
Sbjct: 103 LPPQQTQQRTLSLLQAGTKASHPPYVPSYFPPMPDPHAYIRTPT 146
>gi|148691618|gb|EDL23565.1| taube nuss, isoform CRA_a [Mus musculus]
Length = 222
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 59 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 118
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 119 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 162
>gi|37046785|gb|AAH57895.1| Taf8 protein [Mus musculus]
Length = 221
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 59 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 118
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 119 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 162
>gi|367011433|ref|XP_003680217.1| hypothetical protein TDEL_0C01170 [Torulaspora delbrueckii]
gi|359747876|emb|CCE91006.1| hypothetical protein TDEL_0C01170 [Torulaspora delbrueckii]
Length = 437
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 194 TPVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDC 249
+ V++L +RS L+ + ++D E+ Y+ +LN LP DI+V A S P K + ARF C
Sbjct: 150 SQVISLFVRSNLSEEEQSDPKNDSKEIQYVNILNQLLPEDIRVSAVSLRPPKGFDARFSC 209
Query: 250 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA------ 303
+R+Y+Y F + GLD+ M +AA G HDFRN CK++ + N+ R + A
Sbjct: 210 QYRHYRYLFHKDGLDVGRMDQAAALFKGEHDFRNFCKLDGSKQITNYARNIISAKIIPLS 269
Query: 304 ---------GVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
G W V+ F GQG E +I ++D++K PR
Sbjct: 270 GDFYCFDLIGSAFLWHQVR-------CMMANLFLVGQGLENVSLISDMLDVDKTPR 318
>gi|339243255|ref|XP_003377553.1| putative tRNA pseudouridine synthase tag-124 [Trichinella spiralis]
gi|316973638|gb|EFV57202.1| putative tRNA pseudouridine synthase tag-124 [Trichinella spiralis]
Length = 471
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 130/316 (41%), Gaps = 83/316 (26%)
Query: 89 YKRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMR 148
+ R I L++ +G FC N Q + + + ALIE + I L+T
Sbjct: 31 FSRYCRRHIALMVAYLGWDLDGFCAQNNSQNTVESKIFKALIETKL-IQSLETANYSRCG 89
Query: 149 TVFPPVAPSTQPKPLSILQ-----AGVKQPHPPHIPPYLPLFPDPHAYIRTPVVTLKIRS 203
V+ +Q L + GV +P Y P P P S
Sbjct: 90 RTDKTVSAFSQVLSLDVRSNQTTGVGVFEPDG-----YCPNEPKP-------------TS 131
Query: 204 KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGL 263
+ T+P E EL Y K+LN+ LP++I+V+AW+PV ++AR++C R YKY+FP+ L
Sbjct: 132 RKTTPKSE----ELDYAKILNSVLPQEIRVLAWAPVERTFNARYNCTSRQYKYFFPKGAL 187
Query: 264 DIDA------------------------------MHKAAQYLVGTHDFRNLCKMN----- 288
++ M +A++ L+G HDFRN CK++
Sbjct: 188 NLKVSTVVDFLHFSAIVALFSNFRRGTICVYFQLMEQASKRLIGEHDFRNFCKIDMSKNE 247
Query: 289 ---------------VGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPSFKKGQGN 333
V G +N + L V +A+ Q I V+ F G+G
Sbjct: 248 IQSCVRTVFDVQFTKVNAGGLNSRTLCCFTIVANAFLWHQIRCIMSVL-----FAIGEGK 302
Query: 334 EKPEIIQQLVDIEKYP 349
E+P++I+ L++ E P
Sbjct: 303 EQPDVIEWLLNTELCP 318
>gi|410076082|ref|XP_003955623.1| hypothetical protein KAFR_0B01890 [Kazachstania africana CBS 2517]
gi|372462206|emb|CCF56488.1| hypothetical protein KAFR_0B01890 [Kazachstania africana CBS 2517]
Length = 436
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 12/167 (7%)
Query: 196 VVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLF 251
V++L++RS LT + ++D E+ Y+ +LN LP DI+V A S P + ARF C
Sbjct: 154 VISLRVRSNLTEEEQMDPQNDVREIQYVTILNQLLPADIRVFAVSLRPPPGFDARFSCKA 213
Query: 252 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQN 311
R+YKY F +GL++ M +AA++ G HDFRN CK++ + N+KR + A + N
Sbjct: 214 RHYKYIFHNSGLNLTKMEEAAKFFEGEHDFRNFCKIDGSKQITNYKRTILSAKILKISNN 273
Query: 312 VQFNDI--------KEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
D+ + F GQ E+P++I ++D+ K P+
Sbjct: 274 FYCFDLIGSAFLWHQVRCMMANLFLVGQELEEPQLIPDMMDVVKTPQ 320
>gi|326933891|ref|XP_003213031.1| PREDICTED: transcription initiation factor TFIID subunit 8-like,
partial [Meleagris gallopavo]
Length = 256
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 57 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVETLPAYAKRSQRMVIT 116
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHP HIP Y P FPDPH YI+TP
Sbjct: 117 APPV--TNQPVTPKALTAGQNKPHPSHIPGYFPEFPDPHTYIKTPT 160
>gi|328770686|gb|EGF80727.1| hypothetical protein BATDEDRAFT_3084 [Batrachochytrium
dendrobatidis JAM81]
Length = 289
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 88/176 (50%), Gaps = 31/176 (17%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
VV++ +R+ + D ++LPYL +LN LP DI+V+AWSPV + ARF C R Y
Sbjct: 90 VVSVWVRTARPGDRDTLDWDQLPYLNILNRLLPDDIRVLAWSPVDPIFDARFTCSHRKYN 149
Query: 256 YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMN-----------------------VGNG 292
Y+F AGLD+ AM AA VGTHD R++CK++ V
Sbjct: 150 YFFDGAGLDLIAMRDAASRFVGTHDCRHICKIDPTKAAREGFFVRTIMECDIVPVPVDGA 209
Query: 293 VVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKY 348
F LV G W V+ ++ ++ F G+G E P++I ++D+ K+
Sbjct: 210 PDRFHVLVVK-GRAFLWHQVR--NMMALL-----FLIGRGMEMPDMISDMLDLTKH 257
>gi|297290827|ref|XP_001085409.2| PREDICTED: transcription initiation factor TFIID subunit 8 [Macaca
mulatta]
gi|332234241|ref|XP_003266319.1| PREDICTED: transcription initiation factor TFIID subunit 8 isoform
2 [Nomascus leucogenys]
gi|426353145|ref|XP_004044058.1| PREDICTED: transcription initiation factor TFIID subunit 8 isoform
2 [Gorilla gorilla gorilla]
gi|194381676|dbj|BAG64207.1| unnamed protein product [Homo sapiens]
Length = 234
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 101 IKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF--PPVAPST 158
I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V PPV +
Sbjct: 6 ISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPV--TN 63
Query: 159 QPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 64 QPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 101
>gi|119186911|ref|XP_001244062.1| hypothetical protein CIMG_03503 [Coccidioides immitis RS]
Length = 537
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 94/230 (40%), Gaps = 71/230 (30%)
Query: 192 IRTPVVTLKIRSKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFD 248
+ +P+ L I E DD +ELPY++MLN LP DI+++AW P P + ARF
Sbjct: 219 VESPLGGLDIDVSDLEAEEAWDDIADELPYIQMLNGVLPEDIRILAWCPHPPPGFDARFS 278
Query: 249 CLFRNYKYWFPQAG--------------------------LDIDAMHKAAQYLVGTHDFR 282
C R Y+Y+F Q LDIDAM + A+ +G+HDFR
Sbjct: 279 CRERRYRYFFTQPAFCPTPGPFGFLKRPGDTSGAKMREGWLDIDAMREGAKRFIGSHDFR 338
Query: 283 NLCKMNVGNGVVNFKRLVTHAGV--------------TSAWQNVQFNDIKEVVDSEPS-- 326
N CK++ + NF R ++HA + +Q + +E S
Sbjct: 339 NFCKVDASKQITNFVRKISHADIQVLDASKLPPAFLAQQGFQQFEHPGQQERAASGSHNA 398
Query: 327 --------------------------FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG E P I+ +L+D+ K PR
Sbjct: 399 ALKVYYFSVHGSAFLWHQVRHMVGILFLIGQGLEPPSIVSELLDVSKNPR 448
>gi|27666416|ref|XP_234348.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Rattus norvegicus]
gi|109479568|ref|XP_001080948.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Rattus norvegicus]
Length = 308
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ + E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 59 LTEMLQSYLSEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVGILPAYAKRSQRMVIT 118
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 119 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 162
>gi|407852041|gb|EKG05708.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi]
Length = 526
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 13/160 (8%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
V +L +R+ + P + L Y MLN+ LP I++V W+ V + + ARF C+ R Y+
Sbjct: 201 VFSLTVRAS-SWPTDSPQKPALDYCAMLNSALPVTIRIVGWAYVDDTFDARFSCVGRTYR 259
Query: 256 YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFN 315
Y+F GL+++AM AA L G H+FRN CK +V N V N++R V G+ ++ +
Sbjct: 260 YYFCHRGLNVEAMGNAAARLKGVHNFRNFCKTDVVN-VSNYERDVRSVGIFASEALPELV 318
Query: 316 DIKEV-----------VDSEPSFKKGQGNEKPEIIQQLVD 344
E+ E F G+G E PE++ QL++
Sbjct: 319 SYLEIHANSFLYHQIRCTMEVLFLVGRGLEDPEVVTQLLE 358
>gi|116199417|ref|XP_001225520.1| hypothetical protein CHGG_07864 [Chaetomium globosum CBS 148.51]
gi|88179143|gb|EAQ86611.1| hypothetical protein CHGG_07864 [Chaetomium globosum CBS 148.51]
Length = 553
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 89/191 (46%), Gaps = 57/191 (29%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQ------------- 260
+E+ Y ++LN LP DI+V+AW+P +PE +SARF C R Y+Y+F Q
Sbjct: 198 DEINYPRILNRLLPPDIRVLAWAPTLPEDFSARFSCRERQYRYFFTQPAFAPLPISVDPE 257
Query: 261 ------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTS------- 307
LDIDAM KAA+ G HDFRN CK++ + NFKR + A V
Sbjct: 258 RKKGSEGWLDIDAMRKAAKLFEGVHDFRNFCKVDGVKQISNFKRRMFEADVVEVEDAGSA 317
Query: 308 ----AWQNVQ------------------------FNDIKEVVDSEPSFKKGQGNEKPEII 339
A Q + ++ I+ +V F GQG EKP I+
Sbjct: 318 LPYLAQQGFKPESLVGGTTYPKVYYFHVRGSAFLWHQIRHMV--AILFLVGQGLEKPSIV 375
Query: 340 QQLVDIEKYPR 350
L+D+EK PR
Sbjct: 376 TDLLDVEKNPR 386
>gi|345778767|ref|XP_003431774.1| PREDICTED: transcription initiation factor TFIID subunit 8 isoform
1 [Canis lupus familiaris]
Length = 234
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 101 IKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF--PPVAPST 158
I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V PPV +
Sbjct: 6 ISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPV--TN 63
Query: 159 QPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 64 QPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPT 101
>gi|353237530|emb|CCA69501.1| related to DEG1-pseudouridine synthase [Piriformospora indica DSM
11827]
Length = 423
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 71/114 (62%), Gaps = 10/114 (8%)
Query: 203 SKLTSPGEESDDNELP-----YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW 257
+++T P + S +E P Y+++LN LP I+V+AW+PV + +SARF+C +R+YKY+
Sbjct: 141 AEVTPPTQPSTKSEPPELEVKYIQVLNRILPPSIRVLAWAPVDDTFSARFNCRYRHYKYF 200
Query: 258 F-----PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT 306
F P + L+ID M AA LVG HDFRN CK++ + + R V A ++
Sbjct: 201 FQPLNPPASPLNIDKMRNAASLLVGEHDFRNFCKLDGSKQIERYDRRVVSATIS 254
>gi|321261750|ref|XP_003195594.1| pseudouridylate synthase [Cryptococcus gattii WM276]
gi|317462068|gb|ADV23807.1| pseudouridylate synthase, putative [Cryptococcus gattii WM276]
Length = 511
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 39/176 (22%)
Query: 202 RSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--- 258
+SK+ P + +E PY K+LN+ LP I+V+AWSP+P + +RF C +R+Y+Y F
Sbjct: 194 KSKIVQPTRQP--SEFPYPKLLNSVLPPSIRVLAWSPIPSSFDSRFSCTYRHYRYAFHTR 251
Query: 259 -----PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW---- 309
P+ LD++ M + AQ L+G HD+RN CK++ + N R GV AW
Sbjct: 252 PTPTSPE--LDLELMSQGAQLLLGEHDYRNFCKLDGSKQIENHTR-----GVLKAWFEGG 304
Query: 310 --QNVQ--------------FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
Q V ++ ++ +V F G E P I+ L+D+E++P
Sbjct: 305 ESQGVGEGMMVFNLIGTAFLWHQVRHIVAV--LFLIGAKLEPPSIVSDLLDVERFP 358
>gi|392870780|gb|EAS32613.2| tRNA pseudouridine(38-40) synthase [Coccidioides immitis RS]
Length = 614
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 29/143 (20%)
Query: 192 IRTPVVTLKIRSKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFD 248
+ +P+ L I E DD +ELPY++MLN LP DI+++AW P P + ARF
Sbjct: 219 VESPLGGLDIDVSDLEAEEAWDDIADELPYIQMLNGVLPEDIRILAWCPHPPPGFDARFS 278
Query: 249 CLFRNYKYWFPQAG--------------------------LDIDAMHKAAQYLVGTHDFR 282
C R Y+Y+F Q LDIDAM + A+ +G+HDFR
Sbjct: 279 CRERRYRYFFTQPAFCPTPGPFGFLKRPGDTSGAKMREGWLDIDAMREGAKRFIGSHDFR 338
Query: 283 NLCKMNVGNGVVNFKRLVTHAGV 305
N CK++ + NF R ++HA +
Sbjct: 339 NFCKVDASKQITNFVRKISHADI 361
>gi|327307008|ref|XP_003238195.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892]
gi|326458451|gb|EGD83904.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892]
Length = 614
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 64/121 (52%), Gaps = 30/121 (24%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG----------- 262
+ELPY+++LN LP DI+V+AW P +P + ARF C R Y+Y+F Q
Sbjct: 239 DELPYIQILNGALPEDIRVLAWCPHLPPDFDARFSCRQRRYRYFFTQPAFCPTPGTRGIV 298
Query: 263 ------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
LDI+AM KAAQY VG+HDFRN CK++ + NF R + A
Sbjct: 299 RSPELKDDLSLARPREGWLDIEAMRKAAQYFVGSHDFRNFCKVDTSKQITNFVRRILRAD 358
Query: 305 V 305
+
Sbjct: 359 I 359
>gi|71665382|ref|XP_819661.1| pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70884973|gb|EAN97810.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi]
Length = 429
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 13/160 (8%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
V +L +R+ + P + L Y MLN+ LP I++V W+ V + + ARF C+ R Y+
Sbjct: 104 VFSLTVRAS-SWPTDSPQKPALDYCAMLNSALPVTIRIVGWAYVDDTFDARFSCVGRTYR 162
Query: 256 YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFN 315
Y+F GL+++AM AA L G H+FRN CK +V N V N++R V G+ ++ +
Sbjct: 163 YYFCHRGLNVEAMGNAAARLKGVHNFRNFCKTDVVN-VSNYERDVRSVGIFASEAFPELV 221
Query: 316 DIKEV-----------VDSEPSFKKGQGNEKPEIIQQLVD 344
E+ E F G+G E PE++ QL++
Sbjct: 222 SYLEIHANSFLYHQIRCTMEVLFLVGRGLEDPEVVTQLLE 261
>gi|453086473|gb|EMF14515.1| pseudouridine synthase [Mycosphaerella populorum SO2202]
Length = 546
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 44/177 (24%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVP-EKYSARFDCLFRNYKYWF--------------- 258
+ELPY++++N LP DI+++AW P P + +SARF+C R Y+Y+F
Sbjct: 196 DELPYIQLINRVLPPDIRILAWCPEPGDGFSARFNCKERRYRYFFTNPAYAPLPGGKPWE 255
Query: 259 ---PQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV-------TS 307
P G LDI+AM+ AA+ G HDFRNLCK++ + N++R + HAG+ ++
Sbjct: 256 NGKPGEGFLDIEAMNVAAKKYEGLHDFRNLCKVDPSKQITNWERRIFHAGIHEVGPHSSA 315
Query: 308 AWQNVQ---------------FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
A N ++ ++ +V F GQG+E+P ++ L++++K P
Sbjct: 316 AVSNGDTPKLYYFEVRGSAFLWHQVRHLV--AILFLVGQGHEQPSVVDDLLNVQKTP 370
>gi|358367989|dbj|GAA84607.1| pseudouridylate synthase 3 [Aspergillus kawachii IFO 4308]
Length = 609
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 64/118 (54%), Gaps = 27/118 (22%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVP-EKYSARFDCLFRNYKYWFPQ------------- 260
+ELPY+ MLN LP DI+V+AW P P E + ARF C R+YKY+F Q
Sbjct: 242 DELPYVSMLNKVLPEDIRVLAWCPRPPEGFDARFSCGERHYKYFFTQPAFSPTPGASGFV 301
Query: 261 -------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
LDI+AM KAA+Y GTHDFRN CK++V + +F R + A +
Sbjct: 302 PRDGSGKPPKLREGWLDIEAMRKAAKYFEGTHDFRNFCKLDVTKQIESFYRDIFRADI 359
>gi|310794568|gb|EFQ30029.1| tRNA pseudouridine synthase A [Glomerella graminicola M1.001]
Length = 570
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 90/186 (48%), Gaps = 51/186 (27%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWFPQAG---------- 262
++E+ Y+K+LN LP DI++ AW P P +SARF C R Y+Y+F Q
Sbjct: 226 NDEIQYVKVLNRLLPDDIRITAWCPSPPPDFSARFSCEERQYRYFFTQPAFTPTAATSDG 285
Query: 263 ---------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT------- 306
LDI+AM++AAQ VG HDFRN CK++ + NF+R + A V
Sbjct: 286 TPSGLREGYLDIEAMNEAAQRFVGDHDFRNFCKVDGSKQITNFERRMFEASVGEVRDVGS 345
Query: 307 -------SAWQNVQ---------------FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVD 344
SA Q ++ I+ +V F GQ E+PE++ +L+D
Sbjct: 346 ALPYLGCSAADGGQLPKVYSFNIRGTAFLWHQIRHMVTI--LFLVGQRLERPELVTELLD 403
Query: 345 IEKYPR 350
+EK PR
Sbjct: 404 VEKSPR 409
>gi|317027085|ref|XP_001400055.2| pseudouridylate synthase 3 [Aspergillus niger CBS 513.88]
gi|350634868|gb|EHA23230.1| hypothetical protein ASPNIDRAFT_37245 [Aspergillus niger ATCC 1015]
Length = 608
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 64/118 (54%), Gaps = 27/118 (22%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVP-EKYSARFDCLFRNYKYWFPQ------------- 260
+ELPY+ MLN LP DI+V+AW P P E + ARF C R+YKY+F Q
Sbjct: 242 DELPYVSMLNKVLPEDIRVLAWCPRPPEGFDARFSCGERHYKYFFTQPAFSPTPGASGFV 301
Query: 261 -------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
LDI+AM KAA+Y GTHDFRN CK++V + +F R + A +
Sbjct: 302 PRDGTGKPPKLREGWLDIEAMRKAAKYFEGTHDFRNFCKLDVTKQIESFYRDIFRADI 359
>gi|380094960|emb|CCC07462.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 666
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 66/196 (33%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF--------------- 258
+E+PY ++LN LP DI+++AW+P +P +SARF C R Y+Y+F
Sbjct: 269 DEVPYCRVLNRLLPPDIRIMAWAPALPPNFSARFSCRERQYRYFFTQPAFAPMPSSLEPL 328
Query: 259 -----PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ 313
Q LDI M +AA+ G HDFRN CK++ G + NF R + + + V+
Sbjct: 329 AKKQEKQGWLDIGKMREAAKMFEGVHDFRNFCKIDPGKQITNFSRRIFESDI------VE 382
Query: 314 FNDIKEVV-------------DSEPSFKK--------------------------GQGNE 334
D++ + SE S K GQG E
Sbjct: 383 VKDVESDLPYLGLPEFQPLAGGSEGSHPKVYYFHVRGSAFLWHQIRHMVAVLFLVGQGLE 442
Query: 335 KPEIIQQLVDIEKYPR 350
P I+QQL+D+EK PR
Sbjct: 443 PPSIVQQLLDVEKNPR 458
>gi|159127305|gb|EDP52420.1| pseudouridylate synthase 3 [Aspergillus fumigatus A1163]
Length = 610
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 34/136 (25%)
Query: 204 KLTSPGEESDD-----NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYW 257
++TS G+ D +E+PY+ +LN LP DI+++AW P P + ARF C R YKY+
Sbjct: 224 EMTSGGQADDTWDDIADEIPYISILNRVLPDDIRILAWCPNPPPGFDARFSCRERQYKYF 283
Query: 258 FPQAG----------------------------LDIDAMHKAAQYLVGTHDFRNLCKMNV 289
F Q LDIDAM +AA+Y G HDFRN CK++
Sbjct: 284 FTQPAFSPTPGPLGFAMRGSGDKNASTHLREGWLDIDAMREAARYFEGVHDFRNFCKLDT 343
Query: 290 GNGVVNFKRLVTHAGV 305
+ NF+R++ HA +
Sbjct: 344 SKQIENFERIIYHADI 359
>gi|156040419|ref|XP_001587196.1| hypothetical protein SS1G_12226 [Sclerotinia sclerotiorum 1980]
gi|154696282|gb|EDN96020.1| hypothetical protein SS1G_12226 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 592
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 90/194 (46%), Gaps = 59/194 (30%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWFPQAG----------- 262
+E+PY ++LN LP DI+++AW P P +SARF C R Y+Y+F Q
Sbjct: 222 DEIPYPQVLNRLLPPDIRILAWCPSPPVDFSARFSCRERRYRYFFTQPAFSPIPSQLEHG 281
Query: 263 ----------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV------T 306
LDI+AM +AA+ G HDFRN CK++ G + NF+R + +A + T
Sbjct: 282 ASASKMKDGWLDIEAMREAAKLYEGLHDFRNFCKVDPGKQITNFERRIFYANIEEVKDYT 341
Query: 307 SAWQNVQF-----NDIKEVVDSEPS--------------------------FKKGQGNEK 335
S+ V + I+ +D E F GQG EK
Sbjct: 342 SSLAYVNGDSFLDDSIRSKIDGESKAPKVYTFDLHGSAFLWHQVRHMVAILFLVGQGLEK 401
Query: 336 PEIIQQLVDIEKYP 349
P ++ +L+D+EK P
Sbjct: 402 PSVVSELLDVEKNP 415
>gi|449490633|ref|XP_002187090.2| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Taeniopygia guttata]
Length = 244
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 96 VIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF--PP 153
+I I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V PP
Sbjct: 1 MIQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVETLPAYAKRSQRMVITAPP 60
Query: 154 VAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
V + QP L AG +PHPPHIP + P FPDPH YI+TP
Sbjct: 61 V--TNQPVTPKALTAGQNKPHPPHIPGHFPEFPDPHTYIKTPT 101
>gi|242781979|ref|XP_002479909.1| pseudouridylate synthase 3 [Talaromyces stipitatus ATCC 10500]
gi|218720056|gb|EED19475.1| pseudouridylate synthase 3 [Talaromyces stipitatus ATCC 10500]
Length = 621
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 90/210 (42%), Gaps = 74/210 (35%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG----------- 262
+ELPY+++LN LPRDI+++AW P P + ARF C R Y+Y+F Q
Sbjct: 250 DELPYIQILNGVLPRDIRILAWCPNPPPDFDARFSCRERQYRYFFTQPAFNPVPGELGFL 309
Query: 263 ------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
LDI+AM +A + +G HDFRN C+++ + NF+R++ HA
Sbjct: 310 RSAAHHRGIAKKELRDGWLDIEAMREACKQYIGRHDFRNFCRVDTSKQIENFERIIYHAS 369
Query: 305 VTSAWQNV---------QFNDIKEVVD---------SEPS-------------------- 326
+ N +F + +VD PS
Sbjct: 370 IDLVDPNQHPLGFVGSKEFQPTRNLVDLDNEGNVNEERPSTPLVYTFTLHGSAFLWHQVR 429
Query: 327 ------FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG E P I+ +L+D+ K+PR
Sbjct: 430 HMVAILFLVGQGVEDPSIVSELLDVSKHPR 459
>gi|71663014|ref|XP_818505.1| pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70883761|gb|EAN96654.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi]
Length = 409
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 13/160 (8%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
V +L +R+ + P + L Y MLN+ LP I++V W+ V + + ARF C+ R Y+
Sbjct: 84 VFSLTVRAS-SWPTDSPQKPPLDYCAMLNSALPVTIRIVGWAYVDDTFDARFSCVGRTYR 142
Query: 256 YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFN 315
Y+F GL+++AM AA L G H+FRN CK +V N V N++R V G+ ++ +
Sbjct: 143 YYFCHRGLNVEAMGNAAARLKGVHNFRNFCKTDVVN-VSNYERDVRSVGIFASEAFPELV 201
Query: 316 DIKEV-----------VDSEPSFKKGQGNEKPEIIQQLVD 344
E+ E F G+G E PE++ QL++
Sbjct: 202 SYLEIHANSFLYHQIRCTMEVLFLVGRGLEDPEVVTQLLE 241
>gi|303317424|ref|XP_003068714.1| pseudouridylate synthase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240108395|gb|EER26569.1| pseudouridylate synthase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 610
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 75/156 (48%), Gaps = 29/156 (18%)
Query: 179 PPYLPLFPDPHAYIRTPVVTLKIRSKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAW 236
P P P + +P+ L I E DD +ELPY++MLN LP DI+++AW
Sbjct: 202 PVKTPDIPSSVTPVESPLGGLDIDVCDLEAEEAWDDIADELPYIQMLNGVLPEDIRILAW 261
Query: 237 SP-VPEKYSARFDCLFRNYKYWFPQAG--------------------------LDIDAMH 269
P P + ARF C R Y+Y+F Q LDIDAM
Sbjct: 262 CPHPPPGFDARFSCRERRYRYFFTQPAFCPTPGPFGFLKRPGDTSGAKMREGWLDIDAMR 321
Query: 270 KAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
+ A+ +G+HDFRN CK++ + NF R ++HA +
Sbjct: 322 EGAKRFIGSHDFRNFCKVDASKQITNFVRKISHADI 357
>gi|367035286|ref|XP_003666925.1| hypothetical protein MYCTH_58299 [Myceliophthora thermophila ATCC
42464]
gi|347014198|gb|AEO61680.1| hypothetical protein MYCTH_58299 [Myceliophthora thermophila ATCC
42464]
Length = 558
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 86/190 (45%), Gaps = 54/190 (28%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQ------------- 260
+E+ Y ++LN LP DI+V+AW+P +P +SARF C R Y+Y+F Q
Sbjct: 179 DEINYPRVLNRLLPPDIRVLAWAPTLPAGFSARFSCWERQYRYFFTQPAFTPLPASLDPE 238
Query: 261 -------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT------S 307
LDI AM +AA+ G HDFRN CK++ + NF R V A + S
Sbjct: 239 GKRGGKEGWLDIGAMRQAAKLFEGVHDFRNFCKVDGAKQITNFTRRVFEADIVEVKDTGS 298
Query: 308 AWQNVQFNDIKEVVDSEPS---------------------------FKKGQGNEKPEIIQ 340
A + D K ++ + F GQG EKP ++
Sbjct: 299 ALPYLDLPDFKADGSADGTAYPKVYYFHVRGSAFLWHQIRHMVAVLFLIGQGLEKPSLVT 358
Query: 341 QLVDIEKYPR 350
L+D+EKYPR
Sbjct: 359 DLLDVEKYPR 368
>gi|115391499|ref|XP_001213254.1| hypothetical protein ATEG_04076 [Aspergillus terreus NIH2624]
gi|114194178|gb|EAU35878.1| hypothetical protein ATEG_04076 [Aspergillus terreus NIH2624]
Length = 613
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 29/120 (24%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQ------------- 260
+ELPY+ +LN LP DI+V+AW P PE + ARF C R YKY+F Q
Sbjct: 246 DELPYINLLNRVLPEDIRVLAWCPHPPEGFDARFSCRERQYKYFFTQPAFSPTPGPGGFA 305
Query: 261 ------AG---------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
AG LDI+AM +AA+ VG HDFRN CK++ + NF+R++ H+ +
Sbjct: 306 PRANDKAGSVPKYREGWLDIEAMREAARMFVGRHDFRNFCKLDTSKQIENFERIIYHSDI 365
>gi|340054160|emb|CCC48454.1| putative pseudouridine synthase A-like protein [Trypanosoma vivax
Y486]
Length = 439
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
++L +R+ + P +E L Y MLNN LP I++V W+ V + ARF C+ R Y+
Sbjct: 98 ALSLTVRAS-SWPWDEQQKTPLDYCNMLNNVLPPTIRIVGWTYVDSSFDARFSCVGRTYR 156
Query: 256 YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA 308
Y+F GL+++AM AA L GTH+FRN CK +V N V N++R V A + +
Sbjct: 157 YYFCHRGLNLEAMRDAAALLKGTHNFRNFCKTDVVN-VDNYERHVRRAEIVKS 208
>gi|126309865|ref|XP_001370623.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Monodelphis domestica]
Length = 307
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ + E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYLSEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVETLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG + HPPHIP + P FPDPH YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNKSHPPHIPSHFPEFPDPHTYIKTPT 164
>gi|336272077|ref|XP_003350796.1| hypothetical protein SMAC_02466 [Sordaria macrospora k-hell]
Length = 603
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 66/196 (33%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF--------------- 258
+E+PY ++LN LP DI+++AW+P +P +SARF C R Y+Y+F
Sbjct: 206 DEVPYCRVLNRLLPPDIRIMAWAPALPPNFSARFSCRERQYRYFFTQPAFAPMPSSLEPL 265
Query: 259 -----PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ 313
Q LDI M +AA+ G HDFRN CK++ G + NF R + + + V+
Sbjct: 266 AKKQEKQGWLDIGKMREAAKMFEGVHDFRNFCKIDPGKQITNFSRRIFESDI------VE 319
Query: 314 FNDIKEVV-------------DSEPSFKK--------------------------GQGNE 334
D++ + SE S K GQG E
Sbjct: 320 VKDVESDLPYLGLPEFQPLAGGSEGSHPKVYYFHVRGSAFLWHQIRHMVAVLFLVGQGLE 379
Query: 335 KPEIIQQLVDIEKYPR 350
P I+QQL+D+EK PR
Sbjct: 380 PPSIVQQLLDVEKNPR 395
>gi|238489663|ref|XP_002376069.1| pseudouridylate synthase 3 [Aspergillus flavus NRRL3357]
gi|220698457|gb|EED54797.1| pseudouridylate synthase 3 [Aspergillus flavus NRRL3357]
Length = 656
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 67/121 (55%), Gaps = 30/121 (24%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQ------------- 260
+ELPY+ +LN LP DI+V+AW P PE + ARF C R+YKY+F Q
Sbjct: 286 DELPYVSILNRVLPEDIRVLAWCPHPPEGFDARFSCRERHYKYFFTQPAFSPTPGPLGFT 345
Query: 261 ------AG----------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
AG LDI+AM +AA+Y G HDFRN CK++ + NF+R++ H+
Sbjct: 346 SRANNKAGDSRAKYREGWLDIEAMREAAKYFEGVHDFRNFCKLDTSKQIENFERVIYHSD 405
Query: 305 V 305
+
Sbjct: 406 I 406
>gi|326482502|gb|EGE06512.1| pseudouridylate synthase [Trichophyton equinum CBS 127.97]
Length = 440
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 30/121 (24%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG----------- 262
+ELPY+++LN LP DI+V+AW P +P + ARF C R Y+Y+F Q
Sbjct: 239 DELPYIQILNGALPEDIRVLAWCPHLPPDFDARFSCRQRRYRYFFTQPAFCPTPGARGIV 298
Query: 263 ------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
LDI+AM +AAQY VG+HDFRN CK++ + NF R + A
Sbjct: 299 RSPELKDDLSLARPREGWLDIEAMREAAQYFVGSHDFRNFCKVDTSKQITNFVRRILRAD 358
Query: 305 V 305
+
Sbjct: 359 I 359
>gi|71021049|ref|XP_760755.1| hypothetical protein UM04608.1 [Ustilago maydis 521]
gi|46100185|gb|EAK85418.1| hypothetical protein UM04608.1 [Ustilago maydis 521]
Length = 913
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 34/131 (25%)
Query: 213 DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFP------------- 259
+ ELPY+++LN LP I++ AWSPV +S+RFDC++R+YKY+FP
Sbjct: 254 EGTELPYVQILNRILPSSIRIQAWSPVRSNFSSRFDCVYRHYKYFFPAGPPRLFYPRSKT 313
Query: 260 ---------------QAG---LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVT 301
AG LDI M AA+ L+G HDFRNLCK++ + N++R +
Sbjct: 314 INGEDGVAFSVGGGQDAGATRLDIALMRDAARRLLGEHDFRNLCKIDASKQITNYRRRID 373
Query: 302 HAG---VTSAW 309
V+S W
Sbjct: 374 GVSIDRVSSHW 384
>gi|388857792|emb|CCF48686.1| related to DEG1-pseudouridine synthase [Ustilago hordei]
Length = 650
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 63/112 (56%), Gaps = 27/112 (24%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ--------------- 260
ELPY+++LN LP I++ AWSPV +SARFDC +R+YKY+FP
Sbjct: 200 ELPYVQILNRILPPTIRIQAWSPVRANFSARFDCTYRHYKYFFPSGPPSVFLPPNSPFPS 259
Query: 261 -----AG-------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLV 300
AG LDI M AA+ L+G HDFRNLCK++ + N++R +
Sbjct: 260 SSSTSAGVDAEATRLDIGLMRDAAKRLLGEHDFRNLCKVDASKQITNYRRRI 311
>gi|317137489|ref|XP_003190065.1| pseudouridylate synthase 3 [Aspergillus oryzae RIB40]
Length = 617
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 67/121 (55%), Gaps = 30/121 (24%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQ------------- 260
+ELPY+ +LN LP DI+V+AW P PE + ARF C R+YKY+F Q
Sbjct: 247 DELPYVSILNRVLPEDIRVLAWCPHPPEGFDARFSCRERHYKYFFTQPAFSPTPGPLGFT 306
Query: 261 ------AG----------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
AG LDI+AM +AA+Y G HDFRN CK++ + NF+R++ H+
Sbjct: 307 SRANNKAGDSRAKYREGWLDIEAMREAAKYFEGVHDFRNFCKLDTSKQIENFERVIYHSD 366
Query: 305 V 305
+
Sbjct: 367 I 367
>gi|407919213|gb|EKG12467.1| Pseudouridine synthase I TruA [Macrophomina phaseolina MS6]
Length = 609
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 66/114 (57%), Gaps = 23/114 (20%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVP-EKYSARFDCLFRNYKYWF------PQAG----- 262
+E+PY ++LNN LP DI+V+AW P P + +SARF+C R YKY+F P G
Sbjct: 229 DEMPYCRVLNNVLPPDIRVLAWCPNPGDSFSARFNCKERRYKYFFTNPAFAPTPGAAGVY 288
Query: 263 -----------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
LDI AM +AA YL G HDFRN CK++ + NF+R + HA +
Sbjct: 289 GGGEQSMREGWLDIAAMREAASYLEGLHDFRNFCKVDPAKQITNFERRIFHASI 342
>gi|189193015|ref|XP_001932846.1| pseudouridylate synthase 3 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187978410|gb|EDU45036.1| pseudouridylate synthase 3 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 599
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 87/197 (44%), Gaps = 67/197 (34%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF--------------- 258
+ELPY+++LN LP DI+V AW P P +SARF C R YKY+F
Sbjct: 225 DELPYIQLLNRVLPPDIRVYAWCPNPPADFSARFSCKERRYKYFFTNPCFAPVPGSSGRY 284
Query: 259 ------PQA----GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV--- 305
PQA LDI+AM + +LVG HDFRN CK++ + NF+R + HA +
Sbjct: 285 NTSSTPPQAMREGWLDINAMKQGCAHLVGLHDFRNFCKIDASKQLTNFQRRIFHADIEEV 344
Query: 306 ---------------------------------TSAWQNVQFNDIKEVVDSEPSFKKGQG 332
SA+ Q + V+ F GQG
Sbjct: 345 SPLSVPAFLSHPALTAPGLPASEAPKLYSFTLHGSAFLWHQVRSLIAVL-----FLIGQG 399
Query: 333 NEKPEIIQQLVDIEKYP 349
E P+II QL+DIE P
Sbjct: 400 LESPDIIPQLLDIEANP 416
>gi|149237835|ref|XP_001524794.1| tRNA pseudouridine synthase 3 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451391|gb|EDK45647.1| tRNA pseudouridine synthase 3 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 491
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 33/178 (18%)
Query: 196 VVTLKIRSKLTSPGEESD----DNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDC 249
V+++K+RS LT P E+ D E+ Y ++N NLP DIKV + P PE + ARF C
Sbjct: 196 VISIKLRSNLT-PQEQQDPAFDAKEVDYFTVINANLPADIKVHAICLRP-PENFDARFSC 253
Query: 250 LFRNYKYWFPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA----- 303
R+Y+Y F + LDID M +AA+Y G HDFRN CK++ + +F R + +
Sbjct: 254 KERHYRYLFRKTSTLDIDLMAQAAEYYEGLHDFRNFCKLDGSKQLTSFVRDIRRSKIIPL 313
Query: 304 ------------GVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
G W V+ F GQ E PEI++ L+D+ K+P
Sbjct: 314 DSDGNLYCFDLIGNAFLWHQVR-------CMVAILFLVGQKLESPEIVKDLMDVTKFP 364
>gi|71896307|ref|NP_001026094.1| transcription initiation factor TFIID subunit 8 [Gallus gallus]
gi|75571472|sp|Q5ZMS1.1|TAF8_CHICK RecName: Full=Transcription initiation factor TFIID subunit 8;
AltName: Full=TBP-associated factor 8
gi|53126644|emb|CAG30972.1| hypothetical protein RCJMB04_1f12 [Gallus gallus]
Length = 244
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 101 IKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF--PPVAPST 158
I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V PPV +
Sbjct: 6 ISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVETLPAYAKRSQRMVITAPPV--TN 63
Query: 159 QPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
QP L AG +PHP HIP Y P FPDPH YI+TP
Sbjct: 64 QPVTPKALTAGQNKPHPSHIPGYFPEFPDPHTYIKTPT 101
>gi|108743226|dbj|BAE95392.1| pseudouridine synthase [Saccharomyces bayanus]
Length = 215
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 80/150 (53%), Gaps = 21/150 (14%)
Query: 216 ELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQ 273
E+PY+++LN LP DI++ V P P + ARF C R+YKY F LDI M KAA
Sbjct: 1 EIPYVQILNQLLPDDIRISAVCLRP-PPGFDARFSCTRRHYKYVFNGRHLDITKMSKAAS 59
Query: 274 YLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG-------------VTSAWQNVQFNDIKEV 320
Y +G +DFRN CK++ + FKR + A V SA+ Q + +
Sbjct: 60 YFLGENDFRNFCKLDGSKQLTKFKRTIVSAEILPVSDTFYCFDLVGSAFLWHQVRCMMAI 119
Query: 321 VDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
+ F GQ +E+PEI+ L+DIEK P+
Sbjct: 120 L-----FLVGQTHEEPEIVLCLLDIEKTPQ 144
>gi|70999131|ref|XP_754287.1| pseudouridylate synthase 3 [Aspergillus fumigatus Af293]
gi|66851924|gb|EAL92249.1| pseudouridylate synthase 3 [Aspergillus fumigatus Af293]
Length = 610
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 69/136 (50%), Gaps = 34/136 (25%)
Query: 204 KLTSPGEESDD-----NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYW 257
++TS G D +E+PY+ +LN LP DI+++AW P P + ARF C R YKY+
Sbjct: 224 EMTSGGHADDTWDDIADEIPYISILNRVLPDDIRILAWCPNPPPGFDARFSCRERQYKYF 283
Query: 258 FPQAG----------------------------LDIDAMHKAAQYLVGTHDFRNLCKMNV 289
F Q LDIDAM +AA+Y G HDFRN CK++
Sbjct: 284 FTQPAFSPTPGPLGFAMRGSGDKNASTHLREGWLDIDAMREAARYFEGVHDFRNFCKLDT 343
Query: 290 GNGVVNFKRLVTHAGV 305
+ NF+R++ HA +
Sbjct: 344 SKQIENFERIIYHADI 359
>gi|429862259|gb|ELA36915.1| pseudouridylate synthase 3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 500
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 85/169 (50%), Gaps = 38/169 (22%)
Query: 212 SDDNELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
SD+ E+ Y+K LN LP DI+++AW P P +SARF C R +A I+AM
Sbjct: 185 SDEKEIDYIKTLNRLLPDDIRILAWCPSPPPGFSARFSCEERQ------RATSTIEAMDA 238
Query: 271 AAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ-------------------- 310
AAQ VG HDFRN CK++ G + NF+R + AGV
Sbjct: 239 AAQLFVGDHDFRNFCKVDGGKQITNFERRMFEAGVEEVKDVGSALPYLGLSSADGSKLPK 298
Query: 311 ----NVQ-----FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
N++ ++ I+ +V F GQ EKPE++ +L+D+EK PR
Sbjct: 299 VYSFNIRGTAFLWHQIRHMVSI--LFLVGQRLEKPELVAELLDVEKTPR 345
>gi|315055729|ref|XP_003177239.1| tRNA pseudouridine synthase 3 [Arthroderma gypseum CBS 118893]
gi|311339085|gb|EFQ98287.1| tRNA pseudouridine synthase 3 [Arthroderma gypseum CBS 118893]
Length = 616
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 65/119 (54%), Gaps = 30/119 (25%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF--------------- 258
+ELPY+++LN LP DI+V+AW P +P + ARF C R Y+Y+F
Sbjct: 241 DELPYIQILNGALPEDIRVLAWCPHLPADFDARFSCRQRRYRYFFTQPAFCPTPGARGIV 300
Query: 259 -------------PQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA 303
P+ G LDI+AM +AAQY VG+HDFRN CK++ + NF R + A
Sbjct: 301 RAPELKDDPSSPRPREGWLDIEAMREAAQYFVGSHDFRNFCKVDTSKQITNFVRRILRA 359
>gi|302656723|ref|XP_003020113.1| hypothetical protein TRV_05887 [Trichophyton verrucosum HKI 0517]
gi|291183894|gb|EFE39489.1| hypothetical protein TRV_05887 [Trichophyton verrucosum HKI 0517]
Length = 614
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 30/121 (24%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG----------- 262
+ELPY+++LN LP DI+V+AW P +P + ARF C R Y+Y+F Q
Sbjct: 239 DELPYIQILNGALPEDIRVLAWCPHLPPDFDARFSCRQRRYRYFFTQPAFCPTPGARGIV 298
Query: 263 ------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
LDI+AM +AAQY VG+HDFRN CK++ + NF R + A
Sbjct: 299 RSSELKDDLSLARLREGWLDIEAMREAAQYFVGSHDFRNFCKVDTSKQITNFVRRILRAD 358
Query: 305 V 305
+
Sbjct: 359 I 359
>gi|302495964|ref|XP_003009994.1| hypothetical protein ARB_03805 [Arthroderma benhamiae CBS 112371]
gi|291173519|gb|EFE29349.1| hypothetical protein ARB_03805 [Arthroderma benhamiae CBS 112371]
Length = 409
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 88/213 (41%), Gaps = 79/213 (37%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQ------------- 260
+ELPY+++LN LP DI+V+AW P +P + ARF C R Y+Y+F Q
Sbjct: 34 DELPYIQILNGALPEDIRVLAWCPHLPPDFDARFSCRQRRYRYFFTQPAFCPTPGARGIV 93
Query: 261 ----------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
LDI+AM +AAQY VG+HDFRN CK++ + NF R + A
Sbjct: 94 RSSELKDDLSLERPREGWLDIEAMREAAQYFVGSHDFRNFCKVDTSKQITNFVRRILRAD 153
Query: 305 V---------------------------TSAWQNVQFNDIKEVVDSEPSFK--------- 328
+ T +N+ NDI SF
Sbjct: 154 IELVDPQRTPLGFVQMPGFEPFENGSRNTGVPENI--NDINPAAGKVYSFTVHGTAFLWH 211
Query: 329 -----------KGQGNEKPEIIQQLVDIEKYPR 350
GQG E P I+ +L+D+ K PR
Sbjct: 212 QIRHMVGILFLVGQGLEHPSIVPELLDVTKNPR 244
>gi|150865972|ref|XP_001385404.2| pseudouridine synthase [Scheffersomyces stipitis CBS 6054]
gi|149387228|gb|ABN67375.2| pseudouridine synthase [Scheffersomyces stipitis CBS 6054]
Length = 465
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 88/173 (50%), Gaps = 26/173 (15%)
Query: 196 VVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVA--WSPVPEKYSARFDCL 250
V++L +RS L + E+D E+ YL ++N LP DI++ A P P K+ ARF C
Sbjct: 157 VISLVVRSNLNEEEQLLKENDHKEIKYLSIINALLPPDIRMTAVCLRP-PPKFDARFSCD 215
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
+R+Y+Y F + LDI+ M++A +G+HDFRN CK++ + N+ R V +
Sbjct: 216 YRHYRYLFKKHDLDIELMNEACIKYIGSHDFRNFCKIDGSKQITNYVREVYSMKI----- 270
Query: 311 NVQFNDIKEVVDSEPS--------------FKKGQGNEKPEIIQQLVDIEKYP 349
+ D VD + S F GQ E II+ L D+EKYP
Sbjct: 271 -IHLKDDFYAVDLKGSAFLWHQVRCMVAILFLIGQKLEATTIIEDLFDLEKYP 322
>gi|320038677|gb|EFW20612.1| pseudouridylate synthase 3 [Coccidioides posadasii str. Silveira]
Length = 588
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 27/118 (22%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG----------- 262
+ELPY++MLN LP DI+++AW P P + ARF C R Y+Y+F Q
Sbjct: 244 DELPYIQMLNGVLPEDIRILAWCPHPPPGFDARFSCRERRYRYFFTQPAFCPTPGPFGFL 303
Query: 263 ---------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
LDIDAM + A+ +G+HDFRN CK++ + NF R ++HA +
Sbjct: 304 KRPGDTSGAKMREGWLDIDAMREGAKRFIGSHDFRNFCKVDASKQITNFVRKISHADI 361
>gi|296824052|ref|XP_002850540.1| pseudouridylate synthase 3 [Arthroderma otae CBS 113480]
gi|238838094|gb|EEQ27756.1| pseudouridylate synthase 3 [Arthroderma otae CBS 113480]
Length = 614
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 89/211 (42%), Gaps = 75/211 (35%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG----------- 262
+ELPY+++LN LP DI+V+AW P P + ARF C R Y+Y+F Q
Sbjct: 239 DELPYIQILNGALPDDIRVLAWCPHPPPDFDARFSCRQRRYRYFFTQPAFCPAPGARGIV 298
Query: 263 ------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA- 303
LDI+AM +AAQ+ VG+HDFRN CK++ + NF R + A
Sbjct: 299 RAPELKQDLSLPKLREGWLDIEAMREAAQHFVGSHDFRNFCKVDTSKQITNFVRRILRAD 358
Query: 304 -----------GVTSAWQNVQFND-------IKEVVDSEPSFKK---------------- 329
G QF++ + V D+ P+ K
Sbjct: 359 IELVDPQKTPLGFVQMPGFEQFDNSPRNTGVSESVSDTSPAAAKVYSFTVHGTAFLWHQI 418
Query: 330 ----------GQGNEKPEIIQQLVDIEKYPR 350
GQG E P I+ QL+D+ K PR
Sbjct: 419 RHMVGILFLVGQGLEPPSIVPQLLDVTKNPR 449
>gi|326474345|gb|EGD98354.1| pseudouridylate synthase [Trichophyton tonsurans CBS 112818]
Length = 614
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 30/121 (24%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG----------- 262
+ELPY+++LN LP DI+V+AW P +P + ARF C R Y+Y+F Q
Sbjct: 239 DELPYIQILNGALPEDIRVLAWCPHLPPDFDARFSCRQRRYRYFFTQPAFCPTPGARGIV 298
Query: 263 ------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
LDI+AM +AAQY VG+HDFRN CK++ + NF R + A
Sbjct: 299 RSPELKDDLSLARPREGWLDIEAMREAAQYFVGSHDFRNFCKVDTSKQITNFVRRILRAD 358
Query: 305 V 305
+
Sbjct: 359 I 359
>gi|301122837|ref|XP_002909145.1| tRNA pseudouridine synthase, putative [Phytophthora infestans
T30-4]
gi|262099907|gb|EEY57959.1| tRNA pseudouridine synthase, putative [Phytophthora infestans
T30-4]
Length = 510
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 81/165 (49%), Gaps = 32/165 (19%)
Query: 209 GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAM 268
GEE E+ Y +N LP DI+V A + ++SARFDC R Y+Y+F + LDI+ M
Sbjct: 174 GEEKTLTEVDYASHINRALPADIRVYAVASCRPEFSARFDCKARMYRYFFVRRDLDIEKM 233
Query: 269 HKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTH-----------------------AGV 305
AAQYLVG HDFRN C+++ V F+R V G
Sbjct: 234 RTAAQYLVGKHDFRNFCRIDPNCHV--FERNVRSFEIVECPGQRADDPSQQMYRCEVFGR 291
Query: 306 TSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
W V+ + EV+ F G G E+P II +L+DI + PR
Sbjct: 292 AFLWHQVRC--MVEVL-----FLIGSGREEPSIIPKLLDIAQTPR 329
>gi|347838967|emb|CCD53539.1| similar to pseudouridylate synthase 3 [Botryotinia fuckeliana]
Length = 608
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 90/194 (46%), Gaps = 59/194 (30%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWFPQ------------- 260
+E+PY ++LN LP DI+++AW P P +SARF C R Y+Y+F Q
Sbjct: 255 DEIPYPQVLNRLLPPDIRILAWCPSPPIDFSARFSCRERRYRYFFTQPAFSPIPSQLEHG 314
Query: 261 --------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV------T 306
LDIDAM +AA+ G HDFRN CK++ G + NF+R + +A + T
Sbjct: 315 TSASKMKDGWLDIDAMREAARLYEGLHDFRNFCKVDPGKQITNFERRIFYANIEEVDDYT 374
Query: 307 SAWQNVQ---FND--IKEVVDSEPS--------------------------FKKGQGNEK 335
S+ V F D ++ D E F GQG EK
Sbjct: 375 SSLAYVNGGSFLDESVRSKADGEIKAPKIYTFDLHGSAFLWHQVRHMVAILFLVGQGLEK 434
Query: 336 PEIIQQLVDIEKYP 349
P ++ +L+D+EK P
Sbjct: 435 PSVVTELLDVEKNP 448
>gi|154320712|ref|XP_001559672.1| hypothetical protein BC1G_01828 [Botryotinia fuckeliana B05.10]
Length = 575
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 90/194 (46%), Gaps = 59/194 (30%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWFPQAG----------- 262
+E+PY ++LN LP DI+++AW P P +SARF C R Y+Y+F Q
Sbjct: 222 DEIPYPQVLNRLLPPDIRILAWCPSPPIDFSARFSCRERRYRYFFTQPAFSPIPSQLEHG 281
Query: 263 ----------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV------T 306
LDIDAM +AA+ G HDFRN CK++ G + NF+R + +A + T
Sbjct: 282 TSASKMKDGWLDIDAMREAARLYEGLHDFRNFCKVDPGKQITNFERRIFYANIEEVDDYT 341
Query: 307 SAWQNVQ---FND--IKEVVDSEPS--------------------------FKKGQGNEK 335
S+ V F D ++ D E F GQG EK
Sbjct: 342 SSLAYVNGGSFLDESVRSKADGEIKAPKIYTFDLHGSAFLWHQVRHMVAILFLVGQGLEK 401
Query: 336 PEIIQQLVDIEKYP 349
P ++ +L+D+EK P
Sbjct: 402 PSVVTELLDVEKNP 415
>gi|392572819|gb|EIW65963.1| hypothetical protein TREMEDRAFT_35686 [Tremella mesenterica DSM
1558]
Length = 472
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 43/180 (23%)
Query: 200 KIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF- 258
+I+SK T + EL Y ++LN+ LP I+V+AW+PV E + +RF C +R+YKY F
Sbjct: 155 RIKSKTTK------EEELSYPRLLNSVLPPSIRVLAWAPVEEDFDSRFSCEYRHYKYIFH 208
Query: 259 --------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA- 303
P LDI M AAQ L+GTHDFRN CK++ +++ R + A
Sbjct: 209 RKIPGFHSTPNKHPPSRELDIPLMTLAAQSLIGTHDFRNFCKLDGSKQLLSHVRRILQAY 268
Query: 304 --------------GVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
G W V+ I ++ F G E P ++ L+D+EK+P
Sbjct: 269 FEPSSPDTIVFNLIGTAFLWHQVRH--IVAIL-----FLIGSHLESPTLVSNLLDVEKFP 321
>gi|327271299|ref|XP_003220425.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Anolis carolinensis]
Length = 330
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + CE R QP L+D+++ LIE+G + L YAKR R V
Sbjct: 84 MTEMLQSYISEIGRSAKSVCEHTARTQPTLSDIVVTLIEMGFNVETLPAYAKRSQRMVIT 143
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHP HIP + P FPDPH YI+TP
Sbjct: 144 APPV--TNQPVTPKALTAGQNKPHPSHIPGHFPEFPDPHTYIKTPT 187
>gi|358057869|dbj|GAA96114.1| hypothetical protein E5Q_02775 [Mixia osmundae IAM 14324]
Length = 834
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 61/93 (65%), Gaps = 2/93 (2%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA--GLDIDAMHKAA 272
+EL Y+ +LN LP I+++ WS V ++ RF CL+R YKY+F + GL++D M +AA
Sbjct: 239 DELDYVGILNRILPASIRILGWSAVDAEFDGRFACLWRQYKYFFSLSPLGLELDPMREAA 298
Query: 273 QYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
L G HDFR++CK++ + N++RLV A +
Sbjct: 299 SRLEGEHDFRHMCKIDASKQITNYRRLVLSATI 331
>gi|390596437|gb|EIN05839.1| pseudouridine synthase [Punctularia strigosozonata HHB-11173 SS5]
Length = 538
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 58/91 (63%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E Y+ MLN LP I+V+AWSPV +SAR +C +R+YKY+F L+IDAM AA L
Sbjct: 210 EFRYISMLNRVLPPTIRVLAWSPVAPDFSARHNCKYRHYKYFFDAERLNIDAMRDAASRL 269
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT 306
VG HDFRNL ++ + +F R + A ++
Sbjct: 270 VGEHDFRNLSTLDPSKQLTSFNRRILRAEIS 300
>gi|270010530|gb|EFA06978.1| hypothetical protein TcasGA2_TC009938 [Tribolium castaneum]
Length = 287
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 68/104 (65%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T +I + EVG LS +CEL+ R +P++ADV+LA +E+G + L Y K +V P
Sbjct: 40 LTEMIQCFLTEVGALSKSYCELSGRSEPVVADVILAFVEMGHNFNDLMVYTKGMKHSVLP 99
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
P+ P K L++L AG K P PP+IP +LP FPDPHAY+RTP
Sbjct: 100 PLQPQQPQKQLNMLPAGSKHPLPPYIPQHLPQFPDPHAYVRTPT 143
>gi|330914180|ref|XP_003296528.1| hypothetical protein PTT_06654 [Pyrenophora teres f. teres 0-1]
gi|311331289|gb|EFQ95392.1| hypothetical protein PTT_06654 [Pyrenophora teres f. teres 0-1]
Length = 599
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 87/197 (44%), Gaps = 67/197 (34%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF--------------- 258
+ELPY+++LN LP DI+V AW P P +SARF C R YKY+F
Sbjct: 225 DELPYIQLLNRVLPPDIRVYAWCPNPPADFSARFSCKERRYKYFFTNPCFAPVPGSSGRY 284
Query: 259 ------PQA----GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV--- 305
PQA LDI+AM + +LVG HDFRN CK++ + NF+R + HA +
Sbjct: 285 NTSSTSPQAMREGWLDINAMKQGCAHLVGLHDFRNFCKIDASKQLTNFQRRIFHADIEEV 344
Query: 306 ---------------------------------TSAWQNVQFNDIKEVVDSEPSFKKGQG 332
SA+ Q + V+ F GQG
Sbjct: 345 SPLSVPAFLSHPALSTPGLPASEAPKLYSFTLHGSAFLWHQVRSLIAVL-----FLIGQG 399
Query: 333 NEKPEIIQQLVDIEKYP 349
E P+II +L+DIE P
Sbjct: 400 LESPDIIPKLLDIEANP 416
>gi|393219515|gb|EJD05002.1| tRNA pseudouridine synthase [Fomitiporia mediterranea MF3/22]
Length = 523
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 63/93 (67%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
EL YL +LN LP I+++AWSPV +S+RF+C R+YKY+F GL IDAM AA L
Sbjct: 199 ELRYLTILNRILPPSIRIIAWSPVSSSFSSRFNCKHRHYKYFFSPEGLSIDAMRDAAARL 258
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA 308
VG HDFRNLCK++ + F+R ++ A ++ A
Sbjct: 259 VGDHDFRNLCKLDPSKQLTVFRRNISRADISPA 291
>gi|405122442|gb|AFR97209.1| pseudouridylate synthase [Cryptococcus neoformans var. grubii H99]
Length = 499
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 39/176 (22%)
Query: 202 RSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--- 258
+SK+ P + +E PY K+LN+ LP I+++AWSP+P + +RF C +R+Y+Y F
Sbjct: 181 KSKIVRPPRQP--SEFPYPKLLNSVLPPSIRILAWSPIPSSFDSRFSCTYRHYRYAFHTR 238
Query: 259 -----PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW---- 309
P+ +D++ M + AQ L+G HD+RN CK++ + N R GV AW
Sbjct: 239 PTPTSPE--VDLELMRQGAQLLLGEHDYRNFCKLDGSKQIENHTR-----GVLKAWFEGG 291
Query: 310 --QNVQ--------------FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
Q V ++ ++ ++ F G E P I+ L+D+E++P
Sbjct: 292 ESQGVGEGMMVFNLIGTAFLWHQVRHIIAV--LFLVGAKLEPPSIVSDLLDVERFP 345
>gi|403168693|ref|XP_003328281.2| hypothetical protein PGTG_09575 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167621|gb|EFP83862.2| hypothetical protein PGTG_09575 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 593
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 62/93 (66%), Gaps = 6/93 (6%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF-----PQA-GLDIDAMHKAA 272
Y ++N+ LP ++V+AWSPV + ARF C R+YKY+F PQA GLDI+AM++AA
Sbjct: 247 YHTIINSILPNSVRVLAWSPVHHDFDARFSCQARHYKYFFSLYESPQAPGLDIEAMNRAA 306
Query: 273 QYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
L+G HDFRN CK++ + +F+R + A +
Sbjct: 307 DRLIGEHDFRNFCKIDPSKQLAHFRRKILSAEI 339
>gi|407416983|gb|EKF37879.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi
marinkellei]
Length = 459
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 12/139 (8%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLV 276
L Y MLN+ LP I++V W+ V + + ARF C+ R Y+Y+F GL++ AM AA L
Sbjct: 154 LDYCAMLNSALPVTIRIVGWAYVDDSFDARFSCVGRTYRYYFCHRGLNVKAMGDAAARLK 213
Query: 277 GTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEV-----------VDSEP 325
G H+FRN CK +V N V N++R V G+ ++ + E+ E
Sbjct: 214 GVHNFRNFCKTDVVN-VSNYERDVRSVGIFASETLPELVSYFEIHANSFLYHQIRCTMEV 272
Query: 326 SFKKGQGNEKPEIIQQLVD 344
F G+G E PE++ QL++
Sbjct: 273 LFLVGRGLEDPEVVTQLLE 291
>gi|189239427|ref|XP_974753.2| PREDICTED: similar to TBP-associated factor 8 CG7128-PA [Tribolium
castaneum]
Length = 272
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 68/104 (65%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T +I + EVG LS +CEL+ R +P++ADV+LA +E+G + L Y K +V P
Sbjct: 40 LTEMIQCFLTEVGALSKSYCELSGRSEPVVADVILAFVEMGHNFNDLMVYTKGMKHSVLP 99
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
P+ P K L++L AG K P PP+IP +LP FPDPHAY+RTP
Sbjct: 100 PLQPQQPQKQLNMLPAGSKHPLPPYIPQHLPQFPDPHAYVRTPT 143
>gi|451993927|gb|EMD86399.1| hypothetical protein COCHEDRAFT_1115979 [Cochliobolus
heterostrophus C5]
Length = 605
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 62/121 (51%), Gaps = 30/121 (24%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFP-------------- 259
+ELPY+++LN LP DI+V AW P P +SARF C R YKY+F
Sbjct: 225 DELPYIQLLNRVLPPDIRVYAWCPNPPPDFSARFSCKERRYKYFFTNPCFAPVPGSSGLY 284
Query: 260 ---------------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
+ LDIDAM + Q+L+G HDFRN CK++ + NF R + HA
Sbjct: 285 NPNTPISSENKPKMREGWLDIDAMKQGCQHLIGLHDFRNFCKIDASKQITNFHRRIFHAD 344
Query: 305 V 305
+
Sbjct: 345 I 345
>gi|58271292|ref|XP_572802.1| pseudouridylate synthase [Cryptococcus neoformans var. neoformans
JEC21]
gi|57229061|gb|AAW45495.1| pseudouridylate synthase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 514
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 35/174 (20%)
Query: 202 RSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--- 258
+SK+ P + +E PY K+LN+ LP I+++AWSP+P + +RF C +R+Y+Y F
Sbjct: 197 KSKVIQPPRQP--SEFPYPKLLNSVLPPSIRILAWSPIPASFDSRFSCTYRHYRYAFHTR 254
Query: 259 ---PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW------ 309
LD++ M + AQ L+G HD+RN CK++ + N R GV AW
Sbjct: 255 PTPTSPELDLELMRQGAQLLLGEHDYRNFCKLDGSKQIENHTR-----GVLKAWFEGGKS 309
Query: 310 QNVQ--------------FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
Q V ++ ++ ++ F G E P I+ L+D++++P
Sbjct: 310 QGVGDGMMVFNLIGTAFLWHQVRHIIAV--LFLVGAKLEPPSIVSDLLDVKRFP 361
>gi|134114618|ref|XP_774017.1| hypothetical protein CNBH0640 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256647|gb|EAL19370.1| hypothetical protein CNBH0640 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 514
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 35/174 (20%)
Query: 202 RSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--- 258
+SK+ P + +E PY K+LN+ LP I+++AWSP+P + +RF C +R+Y+Y F
Sbjct: 197 KSKVIQPPRQP--SEFPYPKLLNSVLPPSIRILAWSPIPASFDSRFSCTYRHYRYAFHTR 254
Query: 259 ---PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW------ 309
LD++ M + AQ L+G HD+RN CK++ + N R GV AW
Sbjct: 255 PTPTSPELDLELMRQGAQLLLGEHDYRNFCKLDGSKQIENHTR-----GVLKAWFEGGES 309
Query: 310 QNVQ--------------FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
Q V ++ ++ ++ F G E P I+ L+D++++P
Sbjct: 310 QGVGDGMMVFNLIGTAFLWHQVRHIIAV--LFLVGAKLEPPSIVSDLLDVKRFP 361
>gi|26340678|dbj|BAC34001.1| unnamed protein product [Mus musculus]
Length = 322
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 59 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 118
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + QP L AG +PHPPHIP + P FP PH YI+TP
Sbjct: 119 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPVPHTYIKTPT 162
>gi|402224351|gb|EJU04414.1| pseudouridine synthase [Dacryopinax sp. DJM-731 SS1]
Length = 506
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 17/149 (11%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFP-QAGLDIDAMHKAA 272
+ E+PY ++LN LP I+V+AWSPV + ARF C+ R+YKY+F GLD+ M AA
Sbjct: 196 EGEIPYARVLNRVLPPSIRVLAWSPVHSDFEARFSCIGRHYKYFFRLHPGLDLSRMRDAA 255
Query: 273 QYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ---------NVQ-----FNDIK 318
+ GTHD+RN C+++ G V + R + + + NVQ ++ I+
Sbjct: 256 ARMKGTHDWRNFCRLDGSKGDVRYVRTIEDVTLEPVAKDEDPTLYVLNVQGHGFLWHQIR 315
Query: 319 EVVDSEPSFKKGQGNEKPEIIQQLVDIEK 347
+ + F GQG E P ++ +++ ++
Sbjct: 316 HI--AAVLFLVGQGLEHPSVVTSMLNTDQ 342
>gi|46138645|ref|XP_391013.1| hypothetical protein FG10837.1 [Gibberella zeae PH-1]
Length = 538
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 78/160 (48%), Gaps = 43/160 (26%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWF--------PQAG--- 262
+EL Y ++LN LP DI+++AW P P +SARF C R Y+Y+F P AG
Sbjct: 184 DELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFTPEPSAGGAR 243
Query: 263 ---LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKE 319
LDI+AM AA+ G HDFRN CK++ G + NF+R + A DI+E
Sbjct: 244 NGWLDIEAMRDAAKRYEGDHDFRNFCKIDPGKQITNFERTIYEA------------DIEE 291
Query: 320 VVD--------SEPSFKKGQGNEKPEIIQQLVDIEKYPRI 351
V D S P F +G D KYP++
Sbjct: 292 VQDVSSALPYLSSPQFAPAEG--------LPTDDAKYPKV 323
>gi|432867147|ref|XP_004071050.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Oryzias latipes]
Length = 308
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 64/108 (59%), Gaps = 8/108 (7%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R P L+D +L LIE+G + L YAKR R V
Sbjct: 63 LTEMMQSYITEIGRCAKAYCEHTARSVPTLSDAVLTLIEMGFNVDTLPVYAKRSQRMVIT 122
Query: 152 -PPV--APSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV AP T PK LS AG K+ HP HIP +LP FPDPH YI+TP
Sbjct: 123 APPVTNAPGT-PKSLS---AGQKRTHPSHIPSHLPEFPDPHTYIKTPT 166
>gi|408390631|gb|EKJ70023.1| hypothetical protein FPSE_09868 [Fusarium pseudograminearum CS3096]
Length = 538
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 78/160 (48%), Gaps = 43/160 (26%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWF--------PQAG--- 262
+EL Y ++LN LP DI+++AW P P +SARF C R Y+Y+F P AG
Sbjct: 184 DELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFTPEPSAGGSR 243
Query: 263 ---LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKE 319
LDI+AM AA+ G HDFRN CK++ G + NF+R + A DI+E
Sbjct: 244 NGWLDIEAMRDAAKRYEGDHDFRNFCKIDPGKQITNFERTIYEA------------DIEE 291
Query: 320 VVD--------SEPSFKKGQGNEKPEIIQQLVDIEKYPRI 351
V D S P F +G D KYP++
Sbjct: 292 VRDVSSALPYLSSPQFAPAEG--------LPTDDAKYPKV 323
>gi|213406756|ref|XP_002174149.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|212002196|gb|EEB07856.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 426
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 37/176 (21%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVP-EKYSARFDCLFRNY 254
VV+L +R S++ + Y +LN LP DI+V+A+SP P E + ARF C+ R+Y
Sbjct: 138 VVSLNVRY--------SEERPIAYCDVLNRLLPEDIRVIAYSPNPPEGFDARFSCVRRHY 189
Query: 255 KYWF----PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA------- 303
KY F P LDI+ M +AA +G HDFRN CK++ + N+ R + H+
Sbjct: 190 KYLFLKQYPGGELDIERMSQAAALYLGEHDFRNFCKIDASKQITNYNRGILHSKIICVDP 249
Query: 304 ----------GVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
G W V+ + ++ F GQ E +I+ +L+++EK P
Sbjct: 250 QKQLYAFDLQGTAFLWHQVRC--MMAIL-----FLVGQHLEPVDIVSELLNVEKNP 298
>gi|154276726|ref|XP_001539208.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414281|gb|EDN09646.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 555
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 88/217 (40%), Gaps = 81/217 (37%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFRNYKYWFPQ------------- 260
+ELPY+ +LN LP DI+V+AW P P + ARF C R Y+Y+F Q
Sbjct: 187 DELPYITILNRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFL 246
Query: 261 -----------------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFK 297
LDI+AM K A+YL+G+HDFRN CK++ + N
Sbjct: 247 KRGREENCLGEGSGAPHNEQFREGWLDIEAMRKGAKYLIGSHDFRNFCKVDPSKQITNHV 306
Query: 298 RLVTHAGVT---------SAWQNVQFNDIKEVVD--------SEPS-------------- 326
R + HA + S + +F D +PS
Sbjct: 307 RHIYHADIELLDPKTKPLSYLRQHEFTTFDTENDKAAANGSIGDPSSNLKVYSITIHGSA 366
Query: 327 -------------FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG E P II +L+D+EK+PR
Sbjct: 367 FLWHQVRHLAAILFLVGQGLEAPSIIPELLDVEKHPR 403
>gi|451856829|gb|EMD70120.1| hypothetical protein COCSADRAFT_167047 [Cochliobolus sativus
ND90Pr]
Length = 605
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 62/121 (51%), Gaps = 30/121 (24%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFP-------------- 259
+ELPY+++LN LP DI+V AW P P ++SARF C R YKY+F
Sbjct: 225 DELPYIQLLNRVLPPDIRVYAWCPNPPPEFSARFSCKERRYKYFFTNPCFAPVPGSSGLY 284
Query: 260 ---------------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
+ LDI AM K Q+L+G HDFRN CK++ + NF R + HA
Sbjct: 285 NSNISASSENKPKMREGWLDIAAMKKGCQHLIGLHDFRNFCKVDASKQITNFHRRIFHAD 344
Query: 305 V 305
+
Sbjct: 345 I 345
>gi|321473927|gb|EFX84893.1| hypothetical protein DAPPUDRAFT_194178 [Daphnia pulex]
Length = 201
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ + E+G S +CEL+ R +P++ DV++AL+ +GI + L++YA+R R V P
Sbjct: 44 LTEMMQSFLTELGHSSRLYCELSARVEPVVGDVVMALVSMGIKHNSLESYAQRARRLVLP 103
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPVVTLKIRSKLTSPGEES 212
+ K + ILQ G K+PHP HIP +LP FPD HA + K+ +E
Sbjct: 104 TPTQAVATKQIGILQTGQKRPHPSHIPDHLPAFPDSHAANAEAIKAAKL-------DQEK 156
Query: 213 DDNEL 217
++NE+
Sbjct: 157 ENNEM 161
>gi|147900173|ref|NP_001080509.1| transcription initiation factor TFIID subunit 8 [Xenopus laevis]
gi|82176771|sp|Q7ZYA2.1|TAF8_XENLA RecName: Full=Transcription initiation factor TFIID subunit 8;
AltName: Full=TBP-associated factor 8
gi|27696376|gb|AAH43877.1| Tbn-prov protein [Xenopus laevis]
Length = 293
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 92 AVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF 151
++T ++ + E+G + +CE R QP L D+++ LIE+G + L YAKR R V
Sbjct: 50 SLTEMLQSYLSEIGRSAKSYCEHTARTQPTLPDIVVTLIEMGFNVDSLPAYAKRSQRMVI 109
Query: 152 --PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + P L AG +PHP HIP + P FPDPH YI+TP
Sbjct: 110 TAPPV--TNNPVVPKALSAGDNKPHPAHIPSHFPEFPDPHTYIKTPT 154
>gi|302899152|ref|XP_003047991.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256728923|gb|EEU42278.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 530
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 85/185 (45%), Gaps = 50/185 (27%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWF--------PQAG--- 262
+EL Y ++LN LP DI+++AW P P +SARF C R Y+Y+F P AG
Sbjct: 178 DELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFTPEPTAGGAK 237
Query: 263 ---LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA------GVTSA---WQ 310
LDI+AM AA+ G HDFRN CK++ G + NF R + A V+SA
Sbjct: 238 NGWLDIEAMRDAAKRYEGEHDFRNFCKIDPGKQITNFVRNIFEADIKEVRDVSSALPYLS 297
Query: 311 NVQFNDIKEVVDSEPSFKK--------------------------GQGNEKPEIIQQLVD 344
Q+ VVD + K GQ EKPE+I L+D
Sbjct: 298 GSQYAPAGGVVDKDAVHPKVYMFQVRGSAFLWHQIRHMVGVLFLVGQRLEKPEVISTLLD 357
Query: 345 IEKYP 349
+ K P
Sbjct: 358 VAKSP 362
>gi|403215491|emb|CCK69990.1| hypothetical protein KNAG_0D02400 [Kazachstania naganishii CBS
8797]
Length = 418
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 196 VVTLKIRSKLTSPGEE----SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDC 249
V++L +RS L SP E+ +D EL Y+ M+N+ LP DI+V V P P + AR C
Sbjct: 164 VISLTVRSNL-SPEEQRDPANDHQELQYVHMINHLLPDDIRVSAVCLRP-PADFDARHSC 221
Query: 250 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW 309
R+Y+Y F LD++ M +AA+ G HDFRN CK++ + N++R + +
Sbjct: 222 KHRHYRYLFKAEQLDLEKMREAAKLYEGEHDFRNFCKIDGSKQITNYRRRIISGDIIRVN 281
Query: 310 QNVQFNDIKEVV--------DSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
++ D+ F GQG EKP I+ L++I+ P+
Sbjct: 282 EDFYCFDLVGTAFLWHQVRCMMACLFLVGQGLEKPSIVTDLMNIDLMPQ 330
>gi|358396017|gb|EHK45404.1| hypothetical protein TRIATDRAFT_284330 [Trichoderma atroviride IMI
206040]
Length = 655
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 94/217 (43%), Gaps = 66/217 (30%)
Query: 200 KIRSKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFRNYKY 256
K +SK +P + DD +E+PY +LN LP++I+++AW P P +SARF C R Y+Y
Sbjct: 268 KKQSKPKAPPKPFDDIRDEIPYPHVLNRLLPKEIRILAWCPAPPPDFSARFSCRERQYRY 327
Query: 257 WFPQAG----------------------------LDIDAMHKAAQYLVGTHDFRNLCKMN 288
+F Q LDI+AM AA+ G HDFRNLCK++
Sbjct: 328 FFTQPAFAPMPSLIEDSAAAKKGDQDEKLMKPGWLDIEAMRDAAKRYEGEHDFRNLCKVD 387
Query: 289 VGNGVVNFKRLVTHAGVTSA---------WQNVQFNDIKEVVDSEPSFKK---------- 329
+ NFKR + + + + F + S +F K
Sbjct: 388 PAKQITNFKRRMFESDIVEVKDAASALPYLKAAGFAPENLDLSSGEAFPKVYYFHVRGSA 447
Query: 330 ----------------GQGNEKPEIIQQLVDIEKYPR 350
GQG EKP +I +L+DIEK PR
Sbjct: 448 FLWHQIRHMVAVLFLVGQGLEKPSLISELLDIEKNPR 484
>gi|190346281|gb|EDK38328.2| hypothetical protein PGUG_02426 [Meyerozyma guilliermondii ATCC
6260]
Length = 431
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 196 VVTLKIRSKLT-----SPGEESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFD 248
V++L++RS LT PG +D E+PY+ +LN+ LP I++ + +P P + ARF
Sbjct: 138 VISLEVRSGLTEEQRSQPG--ADQKEIPYITILNSLLPPSIRITGICLNP-PPGFDARFS 194
Query: 249 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA 308
C +R+Y+Y F + LD++AM +AA+ G HDFRN CK++ + N+ R + A +
Sbjct: 195 CSYRHYRYIFRRYDLDLEAMTEAAKKYEGEHDFRNFCKIDGSKQITNYGRTILSANIMPL 254
Query: 309 WQNVQFNDIKEVVDSEPS--------FKKGQGNEKPEIIQQLVDIEKYP 349
+ D+K F G+ EKP ++ +L++++ P
Sbjct: 255 KDDYYVFDLKGTAFLWHQVRCMMGILFLVGRKLEKPSLVDELLNVDVNP 303
>gi|146417456|ref|XP_001484697.1| hypothetical protein PGUG_02426 [Meyerozyma guilliermondii ATCC
6260]
Length = 431
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 196 VVTLKIRSKLT-----SPGEESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFD 248
V++L++RS LT PG +D E+PY+ +LN+ LP I++ + +P P + ARF
Sbjct: 138 VISLEVRSGLTEEQRSQPG--ADQKEIPYITILNSLLPPSIRITGICLNP-PPGFDARFS 194
Query: 249 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA 308
C +R+Y+Y F + LD++AM +AA+ G HDFRN CK++ + N+ R + A +
Sbjct: 195 CSYRHYRYIFRRYDLDLEAMTEAAKKYEGEHDFRNFCKIDGSKQITNYGRTILSANIMPL 254
Query: 309 WQNVQFNDIKEVVDSEPS--------FKKGQGNEKPEIIQQLVDIEKYP 349
+ D+K F G+ EKP ++ +L++++ P
Sbjct: 255 KDDYYVFDLKGTAFLWHQVRCMMGILFLVGRKLEKPSLVDELLNVDVNP 303
>gi|367000836|ref|XP_003685153.1| hypothetical protein TPHA_0D00760 [Tetrapisispora phaffii CBS 4417]
gi|357523451|emb|CCE62719.1| hypothetical protein TPHA_0D00760 [Tetrapisispora phaffii CBS 4417]
Length = 434
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 20/171 (11%)
Query: 196 VVTLKIRSKLTSPGEESDDN----ELPYLKMLNNNLPRDIKVVA--WSPVPEKYSARFDC 249
+++L +RS+L P E+ D N E+ Y +LN LP I++ A +P P+ + ARF+C
Sbjct: 155 IISLDMRSEL-PPAEQVDANFDHKEINYTAILNQILPPAIRITAVCLNP-PKDFDARFNC 212
Query: 250 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW 309
+ R+YKY+F LDI M +AA++ G +DFRN CK++ + N++R + ++
Sbjct: 213 ISRHYKYFFKLDNLDITLMREAAKHFEGENDFRNFCKLDGSKQIKNYERTIFSFDISKVK 272
Query: 310 QNVQFNDI----------KEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
+++ DI + +V F GQ E I++ L+D+ KYPR
Sbjct: 273 EDIYCFDIIASAFLWHQVRYMV--AILFLVGQKLEPSSIVKDLLDVNKYPR 321
>gi|407035846|gb|EKE37872.1| pseudouridine synthase, putative [Entamoeba nuttalli P19]
Length = 366
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 84/170 (49%), Gaps = 24/170 (14%)
Query: 196 VVTLKIRSKLTSPG--EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
VV L +RS L + EL Y +MLN LP DI+ + W VP+ +++RF C R
Sbjct: 112 VVDLWVRSNLKDETILYTKREGELDYCRMLNGLLPTDIRCLGWCGVPDDFNSRFSCQSRT 171
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMN--VGNGV--VN---------FKRLV 300
Y Y+F + D+ M +AAQ +G HDF N CK + V + V VN R V
Sbjct: 172 YHYYFDPSSYDVPKMKEAAQLFLGEHDFTNFCKKDPAVSHCVRRVNSFEVEETDGLSRFV 231
Query: 301 THAGVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
G W V++ +V + F GQG PE I+QL+D+E Y +
Sbjct: 232 V-CGTAFVWHQVRY-----MVGA--LFAIGQG-ANPESIKQLLDVEHYTK 272
>gi|67484392|ref|XP_657416.1| pseudouridine synthase [Entamoeba histolytica HM-1:IMSS]
gi|56474668|gb|EAL52030.1| pseudouridine synthase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449706882|gb|EMD46641.1| tRNA pseudouridine synthase, putative [Entamoeba histolytica KU27]
Length = 366
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 84/170 (49%), Gaps = 24/170 (14%)
Query: 196 VVTLKIRSKLTSPG--EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
VV L +RS L + EL Y +MLN LP DI+ + W VP+ +++RF C R
Sbjct: 112 VVDLWVRSNLKDETILYTKREGELDYCRMLNGLLPTDIRCLGWCGVPDDFNSRFSCQSRT 171
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMN--VGNGV--VN---------FKRLV 300
Y Y+F + D+ M +AAQ +G HDF N CK + V + V VN R V
Sbjct: 172 YHYYFDPSSYDVPKMKEAAQLFLGEHDFTNFCKKDPAVSHCVRRVNSFEVEETDGLSRFV 231
Query: 301 THAGVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
G W V++ +V + F GQG PE I+QL+D+E Y +
Sbjct: 232 V-CGTAFVWHQVRY-----MVGA--LFAIGQG-ANPESIKQLLDVEHYTK 272
>gi|198426359|ref|XP_002130657.1| PREDICTED: similar to tRNA pseudouridine synthase 3 (tRNA-uridine
isomerase 3) (tRNA pseudouridylate synthase 3) [Ciona
intestinalis]
Length = 557
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 105/212 (49%), Gaps = 37/212 (17%)
Query: 213 DDNELPYLKMLNNNLPRDIKVVAWSPVP-EKYSARFDCLFRNYKYWFPQAGLDIDAMHKA 271
++NE + MLN LP +IKV+AW+PV E++SAR CL R Y+Y+F + DI AM++A
Sbjct: 248 EENEYEFTGMLNRVLPAEIKVLAWAPVENEEFSARKHCLGREYRYYFHRGNADITAMNEA 307
Query: 272 AQYLVGTHDFRNLCKMNVGNGVVNFKRLVTH-----------AG---------VTSAWQN 311
A+ G HDFRN K+NV N V +R + H AG + S +
Sbjct: 308 AKLFCGLHDFRNFGKVNVVNCVNYVRR-INHFEISFCDEEKGAGPYRMCFARIIGSGFIY 366
Query: 312 VQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPRIKSAQFPWSSTGATTPNELFR 371
Q + V+ + G G EKPEII +L +IEK+P+ PW G P+ L
Sbjct: 367 HQVRSMMAVL-----YLIGVGLEKPEIITELFNIEKHPKK-----PW--FGLVKPHALVL 414
Query: 372 RVFLLSFLAW--VDQYRIRQTAHC-NIFTNLC 400
+ L W V+Q R H N + NL
Sbjct: 415 FNSIYPDLKWRIVNQDAQRVLEHFQNFWGNLA 446
>gi|342871954|gb|EGU74369.1| hypothetical protein FOXB_15103 [Fusarium oxysporum Fo5176]
Length = 546
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 62/106 (58%), Gaps = 15/106 (14%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWF--------PQAG--- 262
+EL Y ++LN LP DI+++AW P P +SARF C R Y+Y+F P AG
Sbjct: 192 DELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFTPEPSAGGAR 251
Query: 263 ---LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
LDI+AM +AA+ G HDFRN CK++ G + NF R + A +
Sbjct: 252 NGWLDIEAMREAAKRYEGEHDFRNFCKIDPGKQITNFVRTIYEADI 297
>gi|346473635|gb|AEO36662.1| hypothetical protein [Amblyomma maculatum]
Length = 206
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 58/94 (61%)
Query: 103 EVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFPPVAPSTQPKP 162
E+ S FCEL+ R + DV +ALIE+GI + L ++AKRP R P T+
Sbjct: 8 ELARSSRAFCELSGRTVILSGDVFVALIEMGINVESLWSFAKRPNRITLPTPGLQTRSPT 67
Query: 163 LSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
ILQAG K+P PPHIP ++ FPDPHAYIRTP
Sbjct: 68 PKILQAGDKKPLPPHIPEHMAPFPDPHAYIRTPT 101
>gi|226288982|gb|EEH44494.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb18]
Length = 574
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 76/159 (47%), Gaps = 41/159 (25%)
Query: 188 PHAY---IRTPVVTLK-IRSKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSPV-P 240
P AY TP+V S+ + +E DD +ELPY+ +LN LP DI+V+AW P P
Sbjct: 163 PDAYRSGAETPLVGASGCASEESDNEDEWDDIADELPYITILNKVLPEDIRVLAWCPNPP 222
Query: 241 EKYSARFDCLFRNYKYWFPQ----------------------------------AGLDID 266
+ ARF C R Y+Y+F Q LDI+
Sbjct: 223 SDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGSDQKSSGSDSYPSTELREGWLDIE 282
Query: 267 AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
AM + A+YL+GTHDFRN CK++ + N R + HA +
Sbjct: 283 AMREGARYLIGTHDFRNFCKIDPSKQITNHVRHIYHADI 321
>gi|225560228|gb|EEH08510.1| pseudouridylate synthase [Ajellomyces capsulatus G186AR]
Length = 625
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 90/217 (41%), Gaps = 81/217 (37%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFRNYKYWFPQ------------- 260
+ELPY+ +LN LP DI+V+AW P P + ARF C R Y+Y+F Q
Sbjct: 257 DELPYITILNRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFL 316
Query: 261 -----------------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFK 297
LDI+AM + A+YL+G+HDFRN CK++ + N
Sbjct: 317 KRGREENCLWEGSGAPHNEQFREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHV 376
Query: 298 RLVTHAGVT---------SAWQNVQF------NDIKEVVDS--EPS-------------- 326
R + HA + S + +F ND S +PS
Sbjct: 377 RHIYHADIELLDPKTKPLSYLRQHEFTTFDTENDKAAANGSIDDPSSNLKVYSITIHGSA 436
Query: 327 -------------FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG E P II +L+D+EK+PR
Sbjct: 437 FLWHQVRHLAAILFLVGQGLEAPSIIPELLDVEKHPR 473
>gi|396496281|ref|XP_003844707.1| similar to pseudouridylate synthase 3 [Leptosphaeria maculans JN3]
gi|312221288|emb|CBY01228.1| similar to pseudouridylate synthase 3 [Leptosphaeria maculans JN3]
Length = 597
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 81/203 (39%), Gaps = 74/203 (36%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWFP-------------- 259
+ELPY++ LN LP DI+V AW P P +SARF C R YKY+F
Sbjct: 219 DELPYIQHLNRVLPPDIRVYAWCPNPPPDFSARFSCKERRYKYFFTNPSFAPVPGSSGVY 278
Query: 260 -------------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV- 305
+ LDI+AM K Q L+G HDFRN CK++ + NF+R + HA +
Sbjct: 279 NTHTSSPTATRTREGWLDIEAMRKGCQQLIGLHDFRNFCKIDASKQLSNFQRRIFHADIE 338
Query: 306 ----------------TSAWQNVQFNDIKEVVDSEPS----------------------- 326
S W N V+ +P
Sbjct: 339 EVSPLSIPSFLSHPALQSPWAN------SPAVEQQPKLYSFTLHGSAFLWHQVRSLIAVL 392
Query: 327 FKKGQGNEKPEIIQQLVDIEKYP 349
F GQG E P +I L+DI P
Sbjct: 393 FLIGQGLEPPSLISSLLDISANP 415
>gi|225681814|gb|EEH20098.1| pseudouridylate synthase [Paracoccidioides brasiliensis Pb03]
Length = 641
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 66/133 (49%), Gaps = 37/133 (27%)
Query: 210 EESDD--NELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFRNYKYWFPQ------ 260
+E DD +ELPY+ +LN LP DI+V+AW P P + ARF C R Y+Y+F Q
Sbjct: 256 DEWDDIADELPYITILNRVLPEDIRVLAWCPNPPSDFDARFSCRERRYRYFFTQPAFSPT 315
Query: 261 ----------------------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNG 292
LDI+AM + A+YL+GTHDFRN CK++
Sbjct: 316 PGPLGFLKRGSDQKSSGSDSSPSTELREGWLDIEAMREGARYLIGTHDFRNFCKIDPSKQ 375
Query: 293 VVNFKRLVTHAGV 305
+ N R + HA +
Sbjct: 376 ITNHVRHIYHADI 388
>gi|295671354|ref|XP_002796224.1| tRNA pseudouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284357|gb|EEH39923.1| tRNA pseudouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 700
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 67/139 (48%), Gaps = 43/139 (30%)
Query: 210 EESDD--------NELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFRNYKYWFPQ 260
EESD+ +ELPY+ +LN LP DI+V+AW P P + ARF C R Y+Y+F Q
Sbjct: 306 EESDNEGGWDDIADELPYITILNRVLPEDIRVLAWCPNPPSDFDARFSCRERRYRYFFTQ 365
Query: 261 ----------------------------------AGLDIDAMHKAAQYLVGTHDFRNLCK 286
LDI+AM + A+YL+GTHDFRN CK
Sbjct: 366 PAFSPTPGPLGFLKRGSDQKSSVSGSSPITELREGWLDIEAMREGARYLIGTHDFRNFCK 425
Query: 287 MNVGNGVVNFKRLVTHAGV 305
++ + N R + HA +
Sbjct: 426 IDPSKQITNHVRHIYHADI 444
>gi|167377399|ref|XP_001734387.1| tRNA pseudouridine synthase [Entamoeba dispar SAW760]
gi|165904128|gb|EDR29463.1| tRNA pseudouridine synthase, putative [Entamoeba dispar SAW760]
Length = 366
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 81/173 (46%), Gaps = 30/173 (17%)
Query: 196 VVTLKIRSKLTSPG--EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
VV L +RS L + EL Y +MLN LP DI+ + W VP+ +++RF C R
Sbjct: 112 VVDLWVRSNLKDETILYTKREGELDYCRMLNGLLPIDIRCLGWCGVPDDFNSRFSCQSRT 171
Query: 254 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG----------------NGVVNFK 297
Y Y+F + D+ M +AAQ +G HDF N CK + NG+ F
Sbjct: 172 YHYYFDPSSYDVPKMKEAAQLFLGEHDFTNFCKKDPAVPHCIRRVNSFEVEEINGLSRF- 230
Query: 298 RLVTHAGVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
G W V++ +V + F GQG PE I+QL+D+E Y +
Sbjct: 231 ---VVCGTAFVWHQVRY-----MVGA--LFAIGQG-ANPESIKQLLDVEHYTK 272
>gi|425778119|gb|EKV16263.1| Pseudouridylate synthase 3 [Penicillium digitatum PHI26]
Length = 616
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 35/154 (22%)
Query: 210 EESDD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF------PQ 260
+E DD +E+ Y+ +LN LP DI+V+AW P P + ARF C R YKY+F P
Sbjct: 237 KEWDDVADEMNYINVLNRVLPEDIRVLAWCPNPPPGFDARFSCRERRYKYFFTNPAFTPT 296
Query: 261 AG----------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKR 298
G LDI+AM +AA++ G HDFRN CK++ + NF+R
Sbjct: 297 PGSVGFQNRAQNGNGPRSELREGWLDIEAMREAAKHFEGLHDFRNFCKLDTNKQIDNFER 356
Query: 299 LVTHAGVTSAWQNVQFNDIKEVVDSEPSFKKGQG 332
++ H+ + + N + N + V +P F+ +G
Sbjct: 357 IIHHSSIEAV--NAKVNPVGYV--GQPGFQAKEG 386
>gi|406864676|gb|EKD17720.1| pseudouridylate synthase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 1054
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 86/196 (43%), Gaps = 61/196 (31%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFRNYKYWFPQAG----------- 262
+E+PY +LN LP DI+++AW P P+ +SARF C R Y+Y+F Q
Sbjct: 689 DEIPYCSLLNRLLPPDIRILAWCPAPPQDFSARFSCRERQYRYFFTQPAFMPTPPQLEVP 748
Query: 263 -----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
L+I M +AA+ G HDFRN CK++ G + NF+R + +A +
Sbjct: 749 TQKGQTVAMEGKMRDGWLNIKKMREAAKLFEGIHDFRNFCKVDPGKQISNFERRIFYADI 808
Query: 306 ------TSAWQNVQFNDI-----KEVVDSEPS---------------------FKKGQGN 333
TS V D ++ V+ + F GQG
Sbjct: 809 EEVDDSTSGLAFVNGADFAPHSTRQAVNPKVYTFTLHGSAFLWHQVRHMVAVLFLVGQGL 868
Query: 334 EKPEIIQQLVDIEKYP 349
EKP I+ +L+D+E P
Sbjct: 869 EKPSIVSELLDVETNP 884
>gi|425781472|gb|EKV19436.1| Pseudouridylate synthase 3 [Penicillium digitatum Pd1]
Length = 616
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 35/154 (22%)
Query: 210 EESDD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF------PQ 260
+E DD +E+ Y+ +LN LP DI+V+AW P P + ARF C R YKY+F P
Sbjct: 237 KEWDDVADEMNYINVLNRVLPEDIRVLAWCPNPPPGFDARFSCRERRYKYFFTNPAFTPT 296
Query: 261 AG----------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKR 298
G LDI+AM +AA++ G HDFRN CK++ + NF+R
Sbjct: 297 PGSVGFQNRAQNGNGPRSELREGWLDIEAMREAAKHFEGLHDFRNFCKLDTNKQIDNFER 356
Query: 299 LVTHAGVTSAWQNVQFNDIKEVVDSEPSFKKGQG 332
++ H+ + + N + N + V +P F+ +G
Sbjct: 357 IIHHSSIEAV--NAKVNPVGYV--GQPGFQAKEG 386
>gi|62859677|ref|NP_001016717.1| transcription initiation factor TFIID subunit 8 [Xenopus (Silurana)
tropicalis]
gi|134026122|gb|AAI35895.1| TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated
factor, 43kDa [Xenopus (Silurana) tropicalis]
Length = 274
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 92 AVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF 151
++T ++ + E+G + +CE R QP L D+++ LIE+G + L YAKR R V
Sbjct: 31 SLTEMLQSYLSEIGRSAKSYCEHTARTQPTLPDIVVTLIEMGFNVESLPAYAKRSQRMVI 90
Query: 152 --PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + P L AG + HP HIP + P FPDPH YI+TP
Sbjct: 91 TAPPV--TNNPVVPKALSAGQNKQHPAHIPSHFPEFPDPHTYIKTPT 135
>gi|123913133|sp|Q28J24.1|TAF8_XENTR RecName: Full=Transcription initiation factor TFIID subunit 8;
AltName: Full=TBP-associated factor 8
gi|89267860|emb|CAJ82344.1| taube nuss homolog (TAFII43) [Xenopus (Silurana) tropicalis]
Length = 293
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 92 AVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF 151
++T ++ + E+G + +CE R QP L D+++ LIE+G + L YAKR R V
Sbjct: 50 SLTEMLQSYLSEIGRSAKSYCEHTARTQPTLPDIVVTLIEMGFNVESLPAYAKRSQRMVI 109
Query: 152 --PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV + P L AG + HP HIP + P FPDPH YI+TP
Sbjct: 110 TAPPV--TNNPVVPKALSAGQNKQHPAHIPSHFPEFPDPHTYIKTPT 154
>gi|388583265|gb|EIM23567.1| pseudouridine synthase [Wallemia sebi CBS 633.66]
Length = 434
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 77/152 (50%), Gaps = 26/152 (17%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFP------QAGLDIDAMH 269
E +L++LN+ LP I+++AWSPV + ARFDC R+YKY+F GLDI M+
Sbjct: 130 EYNFLQILNSLLPPTIRILAWSPVKNSFDARFDCKERHYKYYFDIKESPLGPGLDIHLMN 189
Query: 270 KAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT---------------SAWQNVQF 314
A + + G HDFRN CK++ + NF R + A + SA+ Q
Sbjct: 190 GALELIKGEHDFRNFCKVDASKQIKNFHRRINDAWIDPPEAGSNLHCVNLRGSAFLYHQV 249
Query: 315 NDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIE 346
I V+ F G G EK EII L+ ++
Sbjct: 250 RCIMAVL-----FLVGCGREKVEIINDLMRVK 276
>gi|358389001|gb|EHK26594.1| hypothetical protein TRIVIDRAFT_134370, partial [Trichoderma virens
Gv29-8]
Length = 462
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 85/200 (42%), Gaps = 64/200 (32%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWFPQAG----------- 262
+E+PY +LN LP++I+++AW P P +SARF C R Y+Y+F Q
Sbjct: 109 DEIPYPHVLNRLLPKEIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFAPTPSHIEGV 168
Query: 263 --------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA 308
LDI+AM AA+ G HDFRNLCK++ + NFKR + + +
Sbjct: 169 PMKQRTRKIMKPGWLDIEAMRDAAKRYEGEHDFRNLCKIDPAKQITNFKRRMFESDIVEV 228
Query: 309 ---------WQNVQFNDIKEVVDSEPS-----------------------------FKKG 330
+ F +D PS F G
Sbjct: 229 KDAASALPYLKAAGFAPEDVALDDSPSGGVYPKVYYFHVRGSAFLWHQIRHMVAVLFLVG 288
Query: 331 QGNEKPEIIQQLVDIEKYPR 350
QG E+P ++ +L+D+EK PR
Sbjct: 289 QGLEQPSLVSELLDVEKNPR 308
>gi|325090241|gb|EGC43551.1| pseudouridylate synthase [Ajellomyces capsulatus H88]
Length = 626
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 86/217 (39%), Gaps = 81/217 (37%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFRNYKYWFPQ------------- 260
+ELPY+ +LN LP DI+V+AW P P + ARF C R Y+Y+F Q
Sbjct: 258 DELPYITILNRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFL 317
Query: 261 -----------------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFK 297
LDI+AM + A+YL+G+HDFRN CK++ + N
Sbjct: 318 KRGREENCLGEGSGAPHNEQFREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHV 377
Query: 298 RLVTHAGVT-----------------SAWQNVQFNDIKEVVDSEPS-------------- 326
R + HA + + + + +PS
Sbjct: 378 RHIYHADIELLDPKTKPLSYLRQHEFTTFDTENYKAAANGSIDDPSSNLKVYSITIHGSA 437
Query: 327 -------------FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG E P II +L+D+EK+PR
Sbjct: 438 FLWHQVRHLAAILFLVGQGLEAPSIIPELLDVEKHPR 474
>gi|403375889|gb|EJY87920.1| Pseudouridine synthase [Oxytricha trifallax]
Length = 482
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 24/158 (15%)
Query: 213 DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAA 272
DDN Y ++LN+ LP DI+++++S VP + +RF C++R YKY+F Q ++I+ M +AA
Sbjct: 180 DDN---YCQVLNHCLPADIRMISFSEVPAHFDSRFSCIYREYKYFFVQQNMNIEKMKQAA 236
Query: 273 QYLVGTHDFRNLCKMNVGNGV------VNFKRLVTHAGVTSAWQNVQFN--DIKEVVDSE 324
+ +G HDFRN CK + + NF R + + NVQ I VV
Sbjct: 237 RKYLGIHDFRNFCKKDESVKLEDDEDDQNFMRRIYRFDIVQQHINVQNEKLSIWHVVIRG 296
Query: 325 PS-------------FKKGQGNEKPEIIQQLVDIEKYP 349
+ F G+G E +I L DIEK P
Sbjct: 297 SAFLWHQVRCMMAVLFMIGRGEEDESVIDLLYDIEKLP 334
>gi|298705212|emb|CBJ28643.1| pseudouridylate synthase 3 [Ectocarpus siliculosus]
Length = 472
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 51/74 (68%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E+ Y +LN LP ++ +AW+PV E +SARF C R Y+Y+F +D+ AM++AA +
Sbjct: 371 EIDYCGILNRVLPPGVRTLAWAPVTEGFSARFSCSDRTYRYFFMARDMDVKAMNEAASKI 430
Query: 276 VGTHDFRNLCKMNV 289
VG+HDFRNLCK+
Sbjct: 431 VGSHDFRNLCKIGT 444
>gi|240278982|gb|EER42488.1| pseudouridylate synthase [Ajellomyces capsulatus H143]
Length = 626
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 86/217 (39%), Gaps = 81/217 (37%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFRNYKYWFPQ------------- 260
+ELPY+ +LN LP DI+V+AW P P + ARF C R Y+Y+F Q
Sbjct: 258 DELPYITILNRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFL 317
Query: 261 -----------------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFK 297
LDI+AM + A+YL+G+HDFRN CK++ + N
Sbjct: 318 KRGREENCLGEGSGAPHNEQFREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHV 377
Query: 298 RLVTHAGVT-----------------SAWQNVQFNDIKEVVDSEPS-------------- 326
R + HA + + + + +PS
Sbjct: 378 RHIYHADIELLDPKTKPLSYLRQHEFTTFDTENYKAAANGSIDDPSSNLKVYSITIHGSA 437
Query: 327 -------------FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG E P II +L+D+EK+PR
Sbjct: 438 FLWHQVRHLAAILFLVGQGLEAPSIIPELLDVEKHPR 474
>gi|212526856|ref|XP_002143585.1| pseudouridylate synthase 3 [Talaromyces marneffei ATCC 18224]
gi|210072983|gb|EEA27070.1| pseudouridylate synthase 3 [Talaromyces marneffei ATCC 18224]
Length = 630
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 91/209 (43%), Gaps = 74/209 (35%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWF------PQAG----- 262
+ELPY+++LN LP+DI+++AW P P + ARF C R Y+Y+F P AG
Sbjct: 262 DELPYIQVLNGVLPQDIRILAWCPNPGPDFDARFSCRERQYRYFFTQPAFNPIAGELGFL 321
Query: 263 ------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
LDI+AM +A ++ VG HDFRN C+++ + NF+R++ A
Sbjct: 322 RSAAHHRGIAKKELRDGWLDIEAMREACKHYVGRHDFRNFCRVDTSKQIENFERIIYRAS 381
Query: 305 V------TSAWQNVQFNDIK------------EVVDSEPS-------------------- 326
+ T+ V D + V + +PS
Sbjct: 382 IDLVDPRTNPLGYVGSKDFQPTRNPVDMPNGSNVNEEQPSTPLVYTFTLHGSAFLWHQVR 441
Query: 327 ------FKKGQGNEKPEIIQQLVDIEKYP 349
F GQG E P I+ +L+DI K P
Sbjct: 442 HMVAVLFLVGQGVESPSIVPELLDISKNP 470
>gi|346975263|gb|EGY18715.1| tRNA pseudouridine synthase [Verticillium dahliae VdLs.17]
Length = 580
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 80/186 (43%), Gaps = 57/186 (30%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG----------- 262
+ELPY K LN LP DI+++AW P PE +SARF C R Y+Y+F Q
Sbjct: 227 DELPYCKTLNRLLPPDIRILAWCPSTPEGFSARFSCTERQYRYYFTQPAFAPAPEGLTPP 286
Query: 263 ------------------------LDIDAMHKAAQYLVGTHDFRNLCK------------ 286
LDIDAM AA+ G HDFRN CK
Sbjct: 287 KGPSQPRKKKDAAPPPPPRPKVGYLDIDAMRNAAKKFEGLHDFRNFCKPETAAAAAAHGG 346
Query: 287 -MNVGNGVVNFKRLVTHA-GVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVD 344
G V K H G W Q + V+ F GQG E+PE++ +L+D
Sbjct: 347 GRGGSGGGVTPKVYYLHVRGSAFLWH--QIRHMVSVL-----FLVGQGLERPEVVDELLD 399
Query: 345 IEKYPR 350
+E++PR
Sbjct: 400 VERHPR 405
>gi|325186551|emb|CCA21092.1| tRNA pseudouridine synthase putative [Albugo laibachii Nc14]
Length = 493
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 83/168 (49%), Gaps = 20/168 (11%)
Query: 200 KIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC-LFRNYKYWF 258
++R K T G E+ Y LN LP DI+V + P +SARF+C R+Y+Y+F
Sbjct: 171 RVRVK-TQDGRIRKITEVDYAASLNRTLPSDIRVYSVVNAPNNFSARFNCDRGRSYRYFF 229
Query: 259 PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIK 318
+ LDI+ M AA G HDFRN C+++ F R V + S+ + N +
Sbjct: 230 MKKDLDIEKMRLAAIGFEGLHDFRNFCRIDT--NCQTFDRNVRSFKIKSSDEIGDKNPYR 287
Query: 319 EVVDSEPS----------------FKKGQGNEKPEIIQQLVDIEKYPR 350
++ E F GQG E+P I+++++DIEKYPR
Sbjct: 288 QMYYFEIHGNAFLWHQVRCMVSILFLIGQGREEPSIVKKMLDIEKYPR 335
>gi|302412567|ref|XP_003004116.1| tRNA pseudouridine synthase [Verticillium albo-atrum VaMs.102]
gi|261356692|gb|EEY19120.1| tRNA pseudouridine synthase [Verticillium albo-atrum VaMs.102]
Length = 553
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 66/143 (46%), Gaps = 42/143 (29%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG----------- 262
+ELPY K LN LP DI+++AW P PE +SARF C R Y+Y+F Q
Sbjct: 192 DELPYCKTLNRLLPPDIRILAWCPSTPEGFSARFSCTERQYRYYFTQPAFAPAPEGLTPP 251
Query: 263 ------------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKR 298
LDIDAM AA+ G HDFRN CK++ G + NF R
Sbjct: 252 KGPSQPRKKKDAAPPPPPRPKVGYLDIDAMRAAAKKFEGLHDFRNFCKVDGGKQLTNFMR 311
Query: 299 LVTHAGVTSAWQNVQFNDIKEVV 321
+ A + V+ +D+ V
Sbjct: 312 RMFEADI------VEVDDVASAV 328
>gi|156395386|ref|XP_001637092.1| predicted protein [Nematostella vectensis]
gi|156224201|gb|EDO45029.1| predicted protein [Nematostella vectensis]
Length = 255
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRT-VF 151
+T ++ + E+ + +CEL++R +P L DV +ALI++G + + YAKR R V
Sbjct: 36 MTEMLQSYLSELARSAKTYCELSSRVRPTLGDVRMALIDMGADLDSIPVYAKRTHRLHVN 95
Query: 152 PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPVV 197
P+ P P L+ G K+P PP+IPP+LP FPDPH+Y++TP
Sbjct: 96 NPLKSRVPPAP-KALETGPKEPCPPYIPPHLPSFPDPHSYVKTPTT 140
>gi|237844499|ref|XP_002371547.1| hypothetical protein TGME49_020220 [Toxoplasma gondii ME49]
gi|211969211|gb|EEB04407.1| hypothetical protein TGME49_020220 [Toxoplasma gondii ME49]
Length = 370
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 60/114 (52%), Gaps = 21/114 (18%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGT 278
Y +LN LP DI++VA +PV + ARFDC R YKY+F GLD+ MH+AAQ VG
Sbjct: 18 YAAVLNAVLPGDIRIVASAPVSPTFDARFDCTGRVYKYFFHSEGLDLQRMHQAAQRFVGE 77
Query: 279 HDFRNLCKMN------------------VGNGVVNFKRLVTHAGVTSAWQNVQF 314
H+FR CK++ G+GV + T AG + W V+F
Sbjct: 78 HNFRYFCKLDPRQYRNPRRTLTSFAVESAGDGVCA---VATIAGRSFLWHQVRF 128
>gi|452825099|gb|EME32098.1| tRNA pseudouridine synthase A [Galdieria sulphuraria]
Length = 433
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
VV+L +RS + P + + EL Y ++LN LP I + W+ V + ARF +R Y
Sbjct: 131 VVSLTVRSHIIPPS--NGEVELDYPRILNGVLPSGIWITGWTSVDPDFHARFSASYRVYH 188
Query: 256 YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLV 300
Y+F L++ AM +AAQ+ VG HDFRN CK +V V +F+R++
Sbjct: 189 YYFRPEHLNLSAMQRAAQFFVGEHDFRNFCKADVTQ-VQSFRRVI 232
>gi|67084085|gb|AAY66977.1| proline rich salivary secreted protein [Ixodes scapularis]
Length = 257
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 65/110 (59%), Gaps = 7/110 (6%)
Query: 92 AVTSVIGLV---IKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMR 148
AV S++ ++ + E+ S FCEL+ R Q + DV +ALIE GI + L + KR R
Sbjct: 38 AVESLVEMLQSCLSEIARSSRAFCELSGRTQVLSGDVFVALIEAGINVESLWAFVKRSNR 97
Query: 149 TVFPPVAPSTQPKPLS--ILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
P PS P+ + ILQAG K+ PP+IP +L FPDPHAYIRTP
Sbjct: 98 ITLP--TPSMTPRSSTPKILQAGEKKSLPPYIPEHLIPFPDPHAYIRTPT 145
>gi|223646924|gb|ACN10220.1| Transcription initiation factor TFIID subunit 8 [Salmo salar]
gi|223672787|gb|ACN12575.1| Transcription initiation factor TFIID subunit 8 [Salmo salar]
Length = 308
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 7/120 (5%)
Query: 82 DCYQRNWYKRAVTSVIGLV---IKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHG 138
+C + K AV S+ ++ I EVG + +CE R P L+D ++ LIE+G ++
Sbjct: 49 ECGFESAEKAAVESLTEMIQSYISEVGRCAKAYCEHTARITPTLSDTVVTLIEMGFNVNT 108
Query: 139 LDTYAKRPMRTVF--PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
L YAKR R V PPV + P L AG K+ HP HIP + P FPDPH YI+TP
Sbjct: 109 LPVYAKRSQRMVITAPPV--TNAPVIPKALIAGQKRTHPSHIPSHFPEFPDPHTYIKTPT 166
>gi|41053603|ref|NP_956580.1| transcription initiation factor TFIID subunit 8 [Danio rerio]
gi|29436446|gb|AAH49422.1| TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated
factor [Danio rerio]
Length = 268
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I EVG + CE R P L+DV++ L+E+G + L YAKR R V
Sbjct: 63 LTEMMQSYITEVGRCAKANCEHTARSTPTLSDVVITLVEMGFNVDTLPVYAKRSQRMVIT 122
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PP+ + P L AG K+ HP HIP + P FPDPH YIRTP
Sbjct: 123 APPI--TNAPVVPKSLTAGQKRTHPAHIPSHFPDFPDPHTYIRTPT 166
>gi|241998644|ref|XP_002433965.1| secreted salivary gland peptide, putative [Ixodes scapularis]
gi|215495724|gb|EEC05365.1| secreted salivary gland peptide, putative [Ixodes scapularis]
Length = 257
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 65/110 (59%), Gaps = 7/110 (6%)
Query: 92 AVTSVIGLV---IKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMR 148
AV S++ ++ + E+ S FCEL+ R Q + DV +ALIE GI + L + KR R
Sbjct: 38 AVESLVEMLQSCLAEIARSSRAFCELSGRTQVLSGDVFVALIEAGINVESLWAFVKRSNR 97
Query: 149 TVFPPVAPSTQPKPLS--ILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
P PS P+ + ILQAG K+ PP+IP +L FPDPHAYIRTP
Sbjct: 98 ITLP--TPSMTPRSSTPKILQAGEKKSLPPYIPEHLIPFPDPHAYIRTPT 145
>gi|401403432|ref|XP_003881470.1| hypothetical protein NCLIV_012350 [Neospora caninum Liverpool]
gi|325115883|emb|CBZ51437.1| hypothetical protein NCLIV_012350 [Neospora caninum Liverpool]
Length = 475
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 48/70 (68%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGT 278
Y +LN LP DI++VA +PVP + ARFDC R YKY+F GLD+ MH+AAQ VG
Sbjct: 149 YAAVLNAVLPGDIRIVASAPVPPGFDARFDCTGRVYKYFFHSEGLDLPRMHRAAQRFVGE 208
Query: 279 HDFRNLCKMN 288
H+FR CK++
Sbjct: 209 HNFRYFCKLD 218
>gi|348502796|ref|XP_003438953.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Oreochromis niloticus]
Length = 308
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 63/108 (58%), Gaps = 8/108 (7%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R P L+D ++ LIE+G + L YAKR R V
Sbjct: 63 LTEMLQSYITEIGRCAKAYCEHTARSVPTLSDTVVTLIEMGFNVDTLPIYAKRSQRMVIT 122
Query: 152 -PPV--APSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PPV AP T PK LS AG K+ HP HIP + P FPDPH YI+TP
Sbjct: 123 APPVTNAPVT-PKALS---AGQKRTHPAHIPSHFPEFPDPHTYIKTPT 166
>gi|19074961|ref|NP_586467.1| tRNA PSEUDOURIDINE SYNTHASE A [Encephalitozoon cuniculi GB-M1]
gi|19069686|emb|CAD26071.1| tRNA PSEUDOURIDINE SYNTHASE A [Encephalitozoon cuniculi GB-M1]
Length = 339
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
E D E Y MLNN+LP DI+VV W+PVP+ +SARF C+ R Y+Y+F + GLDID M K
Sbjct: 137 EDDYKEYKYDVMLNNHLPPDIRVVGWAPVPDTFSARFTCIQRQYRYYFHKKGLDIDRMSK 196
Query: 271 AAQYLVGTHDFRNLCKMNVGNG 292
AA + G F K + N
Sbjct: 197 AASEIKGMSSFYCFSKHSDKNA 218
>gi|449328632|gb|AGE94909.1| tRNA pseudouridine synthase a [Encephalitozoon cuniculi]
Length = 339
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
E D E Y MLNN+LP DI+VV W+PVP+ +SARF C+ R Y+Y+F + GLDID M K
Sbjct: 137 EDDYKEYKYDVMLNNHLPPDIRVVGWAPVPDTFSARFTCIQRQYRYYFHKKGLDIDRMSK 196
Query: 271 AAQYLVGTHDFRNLCKMNVGNG 292
AA + G F K + N
Sbjct: 197 AASEIKGMSSFYCFSKHSDKNA 218
>gi|313229675|emb|CBY18490.1| unnamed protein product [Oikopleura dioica]
Length = 402
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 24/187 (12%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDN----ELPYLKMLNNNLPRDIKVVAWSPVPEK 242
D + V++L + S+L+ +E ++N E ++ ++N LP DI + +W+P+
Sbjct: 122 DKGVHAVNNVISLFVNSRLSE--DEINENVTVGERNFVAIINRQLPDDIWITSWAPISFD 179
Query: 243 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG------------ 290
+SARF C R+Y Y F +GLD++ M +AA YL+G HDFRN + +
Sbjct: 180 FSARFSCKSRHYNYIFDSSGLDVELMKEAASYLIGEHDFRNFSQAQLERQNTVRVCFAAD 239
Query: 291 -NGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
V N + + S + Q ++ G EK I+++L+D+EKYP
Sbjct: 240 IKQVPNMSSMCVFSIKASGFLYHQIRLTMAILAL-----VGNKLEKSTIVKELLDVEKYP 294
Query: 350 RIKSAQF 356
R S ++
Sbjct: 295 RRPSYKY 301
>gi|348675907|gb|EGZ15725.1| hypothetical protein PHYSODRAFT_346666 [Phytophthora sojae]
Length = 553
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 21/168 (12%)
Query: 200 KIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFP 259
K + +L S GE E+ Y +N LP DI+V + + ++SARFDC R Y+Y+F
Sbjct: 209 KFQVRLES-GEIKTLTEVDYASHINRALPADIRVYSVASCRPEFSARFDCKARMYRYFFV 267
Query: 260 QAGLDIDAMHKAAQYLVGTHDFRNLCKMN-----VGNGVVNFKRLVTHAGVTSAWQNVQ- 313
+ LDI+ M AAQ+LVG HDFRN C+++ V +F+ +V G + + Q
Sbjct: 268 RRDLDIEKMRTAAQFLVGKHDFRNFCRIDPNCHVYERNVRSFE-IVECPGQRADDPSQQM 326
Query: 314 -----------FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
++ ++ +V E F G G E+P II +L+DI + PR
Sbjct: 327 FRCEVFGRAFLWHQVRCMV--EVLFLIGSGQEEPSIIPRLLDIAQTPR 372
>gi|320591696|gb|EFX04135.1| pseudouridylate synthase 3 [Grosmannia clavigera kw1407]
Length = 522
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 65/137 (47%), Gaps = 36/137 (26%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVP-EKYSARFDCLFRNY 254
VV L++RS + Y K+LN LP DI+V+AW P +SARF C R Y
Sbjct: 133 VVALRVRS----------NKRAVYAKVLNRLLPPDIRVLAWCATPPADFSARFSCRERQY 182
Query: 255 KYWF-------------------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNV 289
+Y+F P LDIDAM AA VG HDFRN CK++
Sbjct: 183 RYFFTQPAYFTEDGSRPGPTSSAGSASQPPDGWLDIDAMRDAATRFVGLHDFRNFCKVDP 242
Query: 290 GNGVVNFKRLVTHAGVT 306
+ NF+R + AG+T
Sbjct: 243 SKQITNFERRIFAAGIT 259
>gi|261201021|ref|XP_002626911.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis SLH14081]
gi|239593983|gb|EEQ76564.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis SLH14081]
Length = 718
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 95/244 (38%), Gaps = 85/244 (34%)
Query: 192 IRTPVVTLKIRSKLTSPGEESDDN---ELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARF 247
+ +P+ L S E+ D+ ELPY+ +LN LP DI+V+AW P P + ARF
Sbjct: 311 VESPLGGLSFSGSENSDTEDDWDDIADELPYITILNRVLPEDIRVLAWCPNPPPDFDARF 370
Query: 248 DCLFRNYKYWF-----------------------------------PQAG-LDIDAMHKA 271
C R Y+Y+F P+ G LDI+AM +
Sbjct: 371 SCRERRYRYFFTQPAFSPTPGPLGFLKRGRQEQGSERSPNGAHTEQPREGWLDIEAMREG 430
Query: 272 AQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV-------------------------- 305
A+YL+G+HDFRN CK++ + N R + HA +
Sbjct: 431 AKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIELLDPKTKPLSYLGQPGFRPLKSEHD 490
Query: 306 -----TSAWQNVQFNDIKEVVDSEPS--------------FKKGQGNEKPEIIQQLVDIE 346
S W N + S F GQG E P II +L+D+E
Sbjct: 491 RTTANESTWDTSTSNIKIYTITIHGSAFLWHQVRHLAAILFLVGQGLEPPSIIPELLDVE 550
Query: 347 KYPR 350
+ PR
Sbjct: 551 RNPR 554
>gi|346324635|gb|EGX94232.1| pseudouridylate synthase 3 [Cordyceps militaris CM01]
Length = 547
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 86/190 (45%), Gaps = 56/190 (29%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWFPQ------------- 260
+E+PY +LN LP DI+++AW P P +SARF C R Y+Y+F Q
Sbjct: 182 DEIPYPMVLNRLLPPDIRILAWCPSPPPNFSARFSCRERQYRYFFTQPVFSPEPSYGTGT 241
Query: 261 -----AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKR----------------- 298
LDIDAM AA+ G DFRNLCK++ + N+ R
Sbjct: 242 GTTHPGWLDIDAMRDAAKRFEGDQDFRNLCKIDPAKLITNWSRTIFESDIVEVRDAASAL 301
Query: 299 -LVTHAGV-------TSAWQNVQF----------NDIKEVVDSEPSFKKGQGNEKPEIIQ 340
VT AG TS++ V + + I+ +V F G EKP I+
Sbjct: 302 PYVTAAGFAPSALVGTSSFPKVYYFHVRGSAFLWHQIRHMVAV--LFLVGLRLEKPSIVS 359
Query: 341 QLVDIEKYPR 350
+L+D+ KYPR
Sbjct: 360 ELLDVNKYPR 369
>gi|387915796|gb|AFK11507.1| transcription initiation factor TFIID subunit 8 [Callorhinchus
milii]
Length = 317
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 8/109 (7%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ + E+G + +CE + R QP L+DV++ L E+G + + YAKR R V
Sbjct: 72 LTEMLQSYLCEIGRSAKVYCEHSARTQPTLSDVVVTLAEMGFNVDTVQAYAKRSQRMVIT 131
Query: 152 -PPVA--PSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPVV 197
PPV P+T P+ LS G K+ HP +IP + P FPDPH YI+TP +
Sbjct: 132 APPVTNTPAT-PRALST---GQKRQHPSYIPSHFPEFPDPHTYIKTPTI 176
>gi|443730194|gb|ELU15820.1| hypothetical protein CAPTEDRAFT_183324 [Capitella teleta]
Length = 292
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Query: 92 AVTSVIGLVIK---EVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMR 148
A+ ++I +VI E+G S EL+ R + M DV LALIE+G I L +YAK
Sbjct: 38 ALETLIEMVISFLTELGRSSRALSELSCRTEVMPGDVALALIEMGQRIDELVSYAKSTKH 97
Query: 149 TVFPPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRT 194
VF P + Q P ILQ G K+ HP HIP YLP FPDPH YI T
Sbjct: 98 NVFIPPGHAPQQPPPRILQVGEKKGHPTHIPDYLPSFPDPHTYITT 143
>gi|327351094|gb|EGE79951.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis ATCC 18188]
Length = 718
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 95/244 (38%), Gaps = 85/244 (34%)
Query: 192 IRTPVVTLKIRSKLTSPGEESDDN---ELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARF 247
+ +P+ L S E+ D+ ELPY+ +LN LP DI+V+AW P P + ARF
Sbjct: 311 VESPLGGLSFSGSENSDTEDDWDDIADELPYITILNRVLPEDIRVLAWCPNPPPDFDARF 370
Query: 248 DCLFRNYKYWF-----------------------------------PQAG-LDIDAMHKA 271
C R Y+Y+F P+ G LDI+AM +
Sbjct: 371 SCRERRYRYFFTQPAFSPTPGPLGFLKRGRQEQGSERSPNGAHTEQPREGWLDIEAMREG 430
Query: 272 AQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV-------------------------- 305
A+YL+G+HDFRN CK++ + N R + HA +
Sbjct: 431 AKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIELLDPKTKPLSYLGQPGFGPLKSEHD 490
Query: 306 -----TSAWQNVQFNDIKEVVDSEPS--------------FKKGQGNEKPEIIQQLVDIE 346
S W N + S F GQG E P II +L+D+E
Sbjct: 491 RTTANESTWDTSTSNIKIYTITIHGSAFLWHQVRHLAAILFLVGQGLEPPSIIPELLDVE 550
Query: 347 KYPR 350
+ PR
Sbjct: 551 RNPR 554
>gi|239607141|gb|EEQ84128.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis ER-3]
Length = 664
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 95/244 (38%), Gaps = 85/244 (34%)
Query: 192 IRTPVVTLKIRSKLTSPGEESDDN---ELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARF 247
+ +P+ L S E+ D+ ELPY+ +LN LP DI+V+AW P P + ARF
Sbjct: 257 VESPLGGLSFSGSENSDTEDDWDDIADELPYITILNRVLPEDIRVLAWCPNPPPDFDARF 316
Query: 248 DCLFRNYKYWF-----------------------------------PQAG-LDIDAMHKA 271
C R Y+Y+F P+ G LDI+AM +
Sbjct: 317 SCRERRYRYFFTQPAFSPTPGPLGFLKRGRQEQGSERSPNGAHTEQPREGWLDIEAMREG 376
Query: 272 AQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV-------------------------- 305
A+YL+G+HDFRN CK++ + N R + HA +
Sbjct: 377 AKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIELLDPKTKPLSYLGQPGFRPLKSEHD 436
Query: 306 -----TSAWQNVQFNDIKEVVDSEPS--------------FKKGQGNEKPEIIQQLVDIE 346
S W N + S F GQG E P II +L+D+E
Sbjct: 437 RTTANESTWDTSTSNIKIYTITIHGSAFLWHQVRHLAAILFLVGQGLEPPSIIPELLDVE 496
Query: 347 KYPR 350
+ PR
Sbjct: 497 RNPR 500
>gi|82186140|sp|Q6P0T2.1|TAF8_DANRE RecName: Full=Transcription initiation factor TFIID subunit 8;
AltName: Full=Protein taube nuss-like; AltName:
Full=TBP-associated factor 8
gi|41107674|gb|AAH65457.1| Taf8 protein [Danio rerio]
Length = 308
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I EVG + CE R P L+DV++ L+E+G + L YAKR R V
Sbjct: 63 LTEMMQSYITEVGRCAKANCEHTARSTPTLSDVVITLVEMGFNVDTLPVYAKRSQRMVIT 122
Query: 152 -PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
PP+ + P L AG K+ HP HIP + P FPDPH YIRTP
Sbjct: 123 APPI--TNAPVVPKSLTAGQKRTHPAHIPSHFPDFPDPHTYIRTPT 166
>gi|281200681|gb|EFA74899.1| tRNA pseudouridylate synthase [Polysphondylium pallidum PN500]
Length = 1052
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E ++KMLN LP I+V+ WSP+P ++ARF L+R YKY+F + LD++ M +A +
Sbjct: 876 EFQFVKMLNGVLPPYIRVLGWSPIPFHFNARFSTLYRTYKYFFDPSNLDLNLMKEAGKSY 935
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLV 300
+G HDF N CK+++ V +F R++
Sbjct: 936 IGEHDFSNFCKIDL-ESVKSFTRVI 959
>gi|313245560|emb|CBY40253.1| unnamed protein product [Oikopleura dioica]
Length = 402
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 24/187 (12%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDN----ELPYLKMLNNNLPRDIKVVAWSPVPEK 242
D + V++L + S+L+ +E ++N E ++ ++N LP DI + +W+ +
Sbjct: 122 DKGVHAVNNVISLFVNSRLSE--DEINENVTVGERNFVAIINRQLPDDIWITSWAQISSD 179
Query: 243 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG------------ 290
+SARF+C R+Y Y F +GLD++ M +AA YL+G HDFRN + +
Sbjct: 180 FSARFNCKSRHYNYIFDSSGLDVELMKEAASYLIGEHDFRNFSQAQLERQNTVRVCFAAD 239
Query: 291 -NGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
V N + + S + Q ++ G EK I+++L+D+EKYP
Sbjct: 240 IKQVPNMSSMCVFSIKASGFLYHQIRLTMAIL-----ALVGNKLEKSTIVKELLDVEKYP 294
Query: 350 RIKSAQF 356
R S ++
Sbjct: 295 RRPSYKY 301
>gi|357017355|gb|AET50706.1| hypothetical protein [Eimeria tenella]
Length = 319
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 14/110 (12%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGT 278
Y+ +LN LP DI+V+A + VP + ARFDCLFR YKY+F AGLDI M AA+ +G
Sbjct: 18 YVPLLNRLLPPDIRVLAATQVPPTFDARFDCLFRVYKYFFGTAGLDISRMRAAAKQFLGM 77
Query: 279 HDFRNLCKMNVGNGVVNFKRLV--------------THAGVTSAWQNVQF 314
H+F CK++ ++R++ T GV+ W V++
Sbjct: 78 HNFLRFCKVDRKQERSLWRRIIRFDLELQEDGFGVATIVGVSFLWHQVRY 127
>gi|400597275|gb|EJP65010.1| pseudouridine synthase 3 [Beauveria bassiana ARSEF 2860]
Length = 776
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 89/189 (47%), Gaps = 55/189 (29%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWFPQAG----------- 262
+E+PY +LN LP +I+++AW P P +SARF C R Y+Y+F Q
Sbjct: 186 DEIPYPMVLNRLLPPEIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFAPEPSDDGGG 245
Query: 263 ------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKR------------------ 298
LDI AM AA+ G DFRN+CK++ + N+ R
Sbjct: 246 GAKSGWLDIAAMRDAAKRFEGEQDFRNVCKVDPAKLITNWSRTIFESDIVEVQDAATALP 305
Query: 299 LVTHAGVTSA------------WQNVQ-----FNDIKEVVDSEPSFKKGQGNEKPEIIQQ 341
VT AG + A + +V+ ++ I+ +V F GQG EKP I+ +
Sbjct: 306 YVTGAGFSPAHLEKGGKFPRVYYFHVRGSAFLWHQIRHMVAV--LFLVGQGLEKPSIVTE 363
Query: 342 LVDIEKYPR 350
L+D++KYPR
Sbjct: 364 LLDVDKYPR 372
>gi|386002925|ref|YP_005921224.1| tRNA pseudouridine synthase A [Methanosaeta harundinacea 6Ac]
gi|357210981|gb|AET65601.1| tRNA pseudouridine synthase A [Methanosaeta harundinacea 6Ac]
Length = 269
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%)
Query: 221 KMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHD 280
+++N+ LP D+ AW+PVPE +SAR L+R Y+Y P GLD++AM +AA L+G HD
Sbjct: 76 RVVNSRLPTDVWAWAWAPVPENFSARHAALWREYRYHLPGGGLDLEAMREAAGELLGVHD 135
Query: 281 FRNLCKMNVGNGVVNFKRL 299
FRNL G + N +L
Sbjct: 136 FRNLSSEKRGPSIRNLMKL 154
>gi|402076494|gb|EJT71917.1| tRNA-pseudouridine synthase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 672
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 87/207 (42%), Gaps = 75/207 (36%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFRNYKYWFPQ------------- 260
+E+ Y K+LN LP DI+ +AW P P +SARF C R Y+Y+F Q
Sbjct: 265 DEIKYCKLLNRTLPPDIRALAWCPTPPPGFSARFSCRERQYRYFFTQPAFAPAPAVLEGA 324
Query: 261 ------AG----------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
AG L I+AM +AA++ G+HDFRN CK++ + NF+R V A
Sbjct: 325 HHPSSSAGSGGRRVKDGYLGIEAMREAARHFEGSHDFRNFCKIDASKQIGNFERRVLEAD 384
Query: 305 V------TSAWQNVQFNDIKEVVDSEPS-------------------------------- 326
+ TSA + + D E + +
Sbjct: 385 IVEVPDTTSA---LPYLDRPEFLPGQDGNGDSLAVDPPRPRVYYFHVRGTAFLWHQIRHM 441
Query: 327 ----FKKGQGNEKPEIIQQLVDIEKYP 349
F GQG EKP ++ L+D+ +YP
Sbjct: 442 VAVLFLVGQGLEKPSVVADLLDVSRYP 468
>gi|444317471|ref|XP_004179393.1| hypothetical protein TBLA_0C00580 [Tetrapisispora blattae CBS 6284]
gi|387512434|emb|CCH59874.1| hypothetical protein TBLA_0C00580 [Tetrapisispora blattae CBS 6284]
Length = 435
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 24/175 (13%)
Query: 194 TPVVTLKIRSKLTSPGEES---DDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFD 248
+ V++L +RS L++ + + D +E+ Y+ +LN LP DI++ V P P ++ARF
Sbjct: 150 SQVISLNVRSNLSNEEQLNPLKDSDEIHYVDILNQVLPADIRISAVCLRP-PSGFNARFS 208
Query: 249 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG---- 304
C + + + + LDI+ M AA+ G HDFRN CK++ + N+ R + A
Sbjct: 209 CYKSSLQVFIRKKNLDIEKMKIAAKLYQGEHDFRNFCKLDGSKQITNYNRTIISADILPI 268
Query: 305 ---------VTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
V SA+ Q + ++ F GQG E+P +I ++DIEK PR
Sbjct: 269 NGDFYCFDLVGSAFLWHQVRCMMAIL-----FLIGQGLEEPSLINLMLDIEKTPR 318
>gi|384248918|gb|EIE22401.1| tRNA pseudouridine synthase, partial [Coccomyxa subellipsoidea
C-169]
Length = 277
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 87/173 (50%), Gaps = 31/173 (17%)
Query: 196 VVTLKIRSKLTSPGEESD------DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 249
VV L +RS G ++D D E+ Y LN LP DI+V+ W+PVPE +SAR
Sbjct: 78 VVALWLRS-----GAKADEPALGVDEEMDYAVTLNRALPDDIRVLGWTPVPEGFSARCS- 131
Query: 250 LFRNYKYWFPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTH-----A 303
Y+ Q G LD+ AM +AA + VG HDFRN CK++ + V +F+R +
Sbjct: 132 -----SYFIVQRGDLDLAAMQEAAGHFVGDHDFRNFCKVDAQH-VSSFRRTILDFRIVPV 185
Query: 304 GVTSAWQ-------NVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
G+ A Q F + + G+G E P+I+++L+D+E P
Sbjct: 186 GLQGAAQVCALHVRGTAFLWHQVRCMAAVLLLVGRGLESPDIVRRLLDVEVTP 238
>gi|19115377|ref|NP_594465.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe
972h-]
gi|74698445|sp|Q9UTB3.1|YL85_SCHPO RecName: Full=Putative tRNA pseudouridine synthase C25B8.05
gi|6469292|emb|CAB61771.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe]
Length = 450
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 36/175 (20%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
V++L +R P + Y +LN LP DI++ ++ PE + ARF C R+YK
Sbjct: 158 VISLNVRHSERRP--------IIYCDVLNRLLPADIRITGYAFPPEGFDARFSCKQRHYK 209
Query: 256 YWF----PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA-------- 303
Y F P LDID M++AA +G HDFRN CK++ + N+ R + +
Sbjct: 210 YLFTKDYPGGSLDIDRMNEAAALYLGEHDFRNFCKIDASKQITNYHRRILSSKVICIDPS 269
Query: 304 ---------GVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
G W V+ + ++ F GQ E +I L+DI+K P
Sbjct: 270 TGLYAFDLQGTAFLWHQVRC--MMAIL-----FLIGQKLEPASLINDLLDIKKVP 317
>gi|322698560|gb|EFY90329.1| putative pseudouridine synthase 3 [Metarhizium acridum CQMa 102]
Length = 564
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 22/113 (19%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWFPQ------------- 260
+EL Y ++LN LP DI+++AW P P +SARF C R Y+Y+F Q
Sbjct: 208 DELCYPRILNRLLPDDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFAPDPASLDLS 267
Query: 261 -------AG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
AG LDIDAM AA+ G HDFRN CK++ + NF+R + + +
Sbjct: 268 GASKPLKAGWLDIDAMRDAAKRYEGEHDFRNFCKIDPAKQITNFRRRIFESDI 320
>gi|341038783|gb|EGS23775.1| pseudouridylate synthase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 590
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 88/200 (44%), Gaps = 66/200 (33%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF--------------- 258
+E+ Y ++LN LP DI+++AW+P +P +SAR+ C R Y+Y+F
Sbjct: 207 DEINYPRVLNRLLPPDIRILAWAPTLPPNFSARYSCYERQYRYFFTNPAFSPLPPSLDPG 266
Query: 259 -----------PQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG-- 304
P+ G LDIDAM AA+ G HDFRN CK++ + NF R V A
Sbjct: 267 LASSDGNDPNKPREGWLDIDAMRMAAKLFEGVHDFRNFCKVDGAKQISNFTRRVFEADIV 326
Query: 305 -VTSAWQNVQFNDIKEVVDSEPS---------------------------------FKKG 330
V A ++ F + + D PS F G
Sbjct: 327 EVDDATSSLPF--LTQRPDLLPSGFDRSDRYPKVYYFHVRGSAFLWHQIRHMVSVLFAIG 384
Query: 331 QGNEKPEIIQQLVDIEKYPR 350
QG EKP ++ +L+D + +PR
Sbjct: 385 QGLEKPSLVTELLDADSHPR 404
>gi|213511346|ref|NP_001135355.1| transcription initiation factor TFIID subunit 8 [Salmo salar]
gi|209736040|gb|ACI68889.1| Transcription initiation factor TFIID subunit 8 [Salmo salar]
Length = 308
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 92 AVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF 151
++T +I I EVG + +CE R P L+D ++ L E+G + L YAKR R V
Sbjct: 62 SLTEMIQSYISEVGRCAKAYCEHTARITPTLSDAVVTLNEMGFNVDTLPGYAKRSQRMVI 121
Query: 152 --PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTP 195
PPV + P L AG K+ HP HIP + P FPDPH YI+TP
Sbjct: 122 TAPPV--TNAPVIPKALIAGQKRSHPSHIPSHFPEFPDPHTYIKTP 165
>gi|125544113|gb|EAY90252.1| hypothetical protein OsI_11824 [Oryza sativa Indica Group]
Length = 403
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 222 MLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDF 281
L +N+ +D K+ + ARF CL R YKY F + L+I M KAA +G HD+
Sbjct: 161 FLRSNI-KDAKLDVLDNKSGDFLARFSCLGREYKYLFWKGDLNISEMQKAALKFIGEHDY 219
Query: 282 RNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPS-------------FK 328
RN CKM+ N V N++R +T +++ Q ++++ + + F
Sbjct: 220 RNFCKMDAAN-VSNYRRHITDFNISAYDQRSNYDELWAITIKGSAFLWHQVRCMVAVLFL 278
Query: 329 KGQGNEKPEIIQQLVDIEKYPR 350
GQG E P I+ L+DI K PR
Sbjct: 279 IGQGLESPCIVDSLLDITKTPR 300
>gi|40882706|gb|AAR96247.1| putative pseudouridine synthase [Oryza sativa Japonica Group]
gi|108708473|gb|ABF96268.1| tRNA pseudouridine synthase A family protein [Oryza sativa Japonica
Group]
Length = 411
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 222 MLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDF 281
L +N+ +D K+ + ARF CL R YKY F + L+I M KAA +G HD+
Sbjct: 161 FLRSNI-KDAKLDVLDNKSGDFLARFSCLGREYKYLFWKGDLNISEMQKAALKFIGEHDY 219
Query: 282 RNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPS-------------FK 328
RN CKM+ N V N++R +T +++ Q ++++ + + F
Sbjct: 220 RNFCKMDAAN-VSNYRRHITDFNISAYDQRSNYDELWAITIKGSAFLWHQVRCMVAVLFL 278
Query: 329 KGQGNEKPEIIQQLVDIEKYPR 350
GQG E P I+ L+DI K PR
Sbjct: 279 IGQGLETPCIVDSLLDITKTPR 300
>gi|222625021|gb|EEE59153.1| hypothetical protein OsJ_11064 [Oryza sativa Japonica Group]
Length = 403
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 222 MLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDF 281
L +N+ +D K+ + ARF CL R YKY F + L+I M KAA +G HD+
Sbjct: 161 FLRSNI-KDAKLDVLDNKSGDFLARFSCLGREYKYLFWKGDLNISEMQKAALKFIGEHDY 219
Query: 282 RNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPS-------------FK 328
RN CKM+ N V N++R +T +++ Q ++++ + + F
Sbjct: 220 RNFCKMDAAN-VSNYRRHITDFNISAYDQRSNYDELWAITIKGSAFLWHQVRCMVAVLFL 278
Query: 329 KGQGNEKPEIIQQLVDIEKYPR 350
GQG E P I+ L+DI K PR
Sbjct: 279 IGQGLETPCIVDSLLDITKTPR 300
>gi|219117902|ref|XP_002179737.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408790|gb|EEC48723.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 216
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 26/152 (17%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL-FRNYKYWFPQAGLDIDAMHKAAQY 274
E Y K+LNN LP DI+V+ W PV + +SARF ++ + LD++AM +
Sbjct: 53 EHAYDKILNNLLPDDIRVLGWIPVSDDFSARFSATSRTYRYFFRRRRTLDVEAMRQGLHR 112
Query: 275 LVGTHDFRNLCKMNVGNGVVNFKRLVTHA-----------------GVTSAWQNVQFNDI 317
+ GTHDFRN CKM+V V NF+R + A G W +++
Sbjct: 113 MQGTHDFRNFCKMDV-EKVYNFERRIDKAEIVNMERDTGVSYFLIVGQAFLWHQIRYM-- 169
Query: 318 KEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
+ F GQG E PE++ ++DI + P
Sbjct: 170 -----ASILFAIGQGLETPELVTAMLDIAQNP 196
>gi|340515588|gb|EGR45841.1| hypothetical protein TRIREDRAFT_80941 [Trichoderma reesei QM6a]
Length = 604
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 87/216 (40%), Gaps = 80/216 (37%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFRNYKYWFPQAG----------- 262
+E+PY +LN LP++I+++AW P P +SARF C R Y+Y+F Q
Sbjct: 217 DEIPYPHVLNRLLPKEIRILAWCPSPPPGFSARFSCRERQYRYFFTQPAFAPAPSHVDNT 276
Query: 263 ---------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVT 301
LDIDAM AA+ G HDFRNLCK++ + NFKR +
Sbjct: 277 AAAAAATGQGGANGKAVKSGWLDIDAMRDAAKRYEGEHDFRNLCKIDPAKQITNFKRRMF 336
Query: 302 HAGVTS----------------AWQNVQFNDIKEVVDSEPSFKK---------------- 329
+ + A +N++ D S +K
Sbjct: 337 ESDIVEVEDAASALPYLQAAGFAPENLEALDSSSSSSSASGARKGMYPKVYYFHVRGSAF 396
Query: 330 ---------------GQGNEKPEIIQQLVDIEKYPR 350
GQG EKP ++ +L+D++K PR
Sbjct: 397 LWHQIRHMVAVLFLVGQGLEKPSVVSELLDVDKNPR 432
>gi|322709808|gb|EFZ01383.1| putative pseudouridine synthase 3 [Metarhizium anisopliae ARSEF 23]
Length = 564
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 22/113 (19%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWFPQ------------- 260
+EL Y ++LN LP DI+++AW P P +SARF C R Y+Y+F Q
Sbjct: 208 DELCYPRILNRLLPDDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFAPDPTSLDLS 267
Query: 261 -------AG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
AG LDIDAM AA+ G HDFRN CK++ + NF R + + +
Sbjct: 268 GASKPLKAGWLDIDAMRDAAKRYEGEHDFRNFCKIDPAKQITNFHRRIFESDI 320
>gi|159487841|ref|XP_001701931.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii]
gi|158281150|gb|EDP06906.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii]
Length = 287
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 34/159 (21%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQY 274
E Y +++N LP +++++ W+PVP ++AR C R ++ + Q LDI AM AA +
Sbjct: 119 QEFDYPRLINKALPPEVRILGWTPVPADFNAR--CGGRAGEWVYQQHSLDIQAMRTAAAH 176
Query: 275 LVGTHDFRNLCKMNVGNGVVNFKRLV----------------------THAGVTSAWQNV 312
+G HDFRN CK +V V +F+R + T G W V
Sbjct: 177 FIGEHDFRNFCKPDVAT-VRSFRRRILSFTVEPVTTSAADAAHQVYALTVRGTAFLWHQV 235
Query: 313 Q-FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
+ I +V G+G E P+++ +L+D+E PR
Sbjct: 236 RCMAAILLMV--------GRGQEAPDVVARLLDVEACPR 266
>gi|429962244|gb|ELA41788.1| tRNA pseudouridine synthase A [Vittaforma corneae ATCC 50505]
Length = 327
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 196 VVTLKIRSKLTSPGE-----ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 250
VV++++ S+L +P ESD E PY LN LP DI++ W+PVP+ ++AR+DC+
Sbjct: 95 VVSVEVNSRLENPNRSYQIIESDHEEYPYDVALNMLLPDDIRITGWAPVPDNFNARYDCI 154
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNL 284
R+YKY+F LD+ M +A + + DF +L
Sbjct: 155 QRHYKYFFALGSLDLKKMEEAVEKICQMDDFYHL 188
>gi|389743086|gb|EIM84271.1| pseudouridine synthase [Stereum hirsutum FP-91666 SS1]
Length = 717
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 61/130 (46%), Gaps = 41/130 (31%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG-------------- 262
L Y+K LN LP I+V AWSPV +S+RF+C +R+YKY+F +
Sbjct: 255 LRYMKTLNRLLPPTIRVHAWSPVDADFSSRFNCQYRHYKYFFTNSSFDIFPSASSSSSSS 314
Query: 263 ---------------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 295
LDI M +AA LVGTHDFRNLCK++ G +
Sbjct: 315 APTPGPSPPPTPANPTMNEAPVPHGVELDIARMQEAAARLVGTHDFRNLCKLDAGKQIEV 374
Query: 296 FKRLVTHAGV 305
F+R + A V
Sbjct: 375 FERTILSATV 384
>gi|302851624|ref|XP_002957335.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri
f. nagariensis]
gi|300257294|gb|EFJ41544.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri
f. nagariensis]
Length = 642
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 41/182 (22%)
Query: 196 VVTLKIRS--KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
VV L +RS ++ P E + E Y +++N LP D++V+ W+ VPE +++R+
Sbjct: 147 VVALNLRSVARVDEP-EAPLELEYDYPRLVNKALPPDVRVLGWTAVPENFNSRY-----V 200
Query: 254 YKYWFPQA---GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKR------------ 298
Y P++ LDIDAM AA VG HDFRN CK +V V +F+R
Sbjct: 201 YHPDPPESCRYSLDIDAMRAAAARFVGEHDFRNFCKPDVAT-VRSFRRRILSFTLDPVPT 259
Query: 299 ----------LVTHAGVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKY 348
+T G W V+ + V+ G+G E+PE++ +L+D+E +
Sbjct: 260 SSSDGAHRVFAITVRGTAFLWHQVRC--MAAVL-----LMVGRGQERPEVVSELLDVEAH 312
Query: 349 PR 350
PR
Sbjct: 313 PR 314
>gi|123976924|ref|XP_001330657.1| tRNA pseudouridine synthase A family protein [Trichomonas vaginalis
G3]
gi|121897278|gb|EAY02404.1| tRNA pseudouridine synthase A family protein [Trichomonas vaginalis
G3]
Length = 353
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 36/179 (20%)
Query: 196 VVTLKIRS-------KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 248
V+++++RS + G + E+ Y ++LN LP I+V + V ++ARFD
Sbjct: 84 VISVRVRSVCPTGLGSIPREGAKVQKEEMNYAQILNGILPPSIRVTGVAYVKPDFNARFD 143
Query: 249 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKM------------------NVG 290
C R Y+Y+F + +ID M +AA++L+G HD+R CK + G
Sbjct: 144 CATRGYRYFFHKFDKNIDLMKEAAEHLLGEHDYRAFCKFSPDSTKHCVRKIYKCEFGDAG 203
Query: 291 NGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
GV F+ + G W ++ I ++ F G G EKP I ++L++ KYP
Sbjct: 204 GGVWYFEIV----GSGFIWHQIRC--IASIL-----FAVGNGFEKPSITKELLNTAKYP 251
>gi|410900294|ref|XP_003963631.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
isoform 2 [Takifugu rubripes]
Length = 268
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 55/104 (52%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ I EVG + +CE R P L+D ++ LIE+G L YAKR R V
Sbjct: 63 LTEMMQSFITEVGRSAKAYCEHTARSIPTLSDTVVTLIEMGFNAETLPVYAKRSQRMVIT 122
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
+ P L AG K+ HP +IP + P FPDPH YI+TP
Sbjct: 123 APPVTNPPVTPKALTAGHKRSHPGYIPSHFPEFPDPHTYIKTPT 166
>gi|410900292|ref|XP_003963630.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
isoform 1 [Takifugu rubripes]
Length = 308
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 55/104 (52%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ I EVG + +CE R P L+D ++ LIE+G L YAKR R V
Sbjct: 63 LTEMMQSFITEVGRSAKAYCEHTARSIPTLSDTVVTLIEMGFNAETLPVYAKRSQRMVIT 122
Query: 153 PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
+ P L AG K+ HP +IP + P FPDPH YI+TP
Sbjct: 123 APPVTNPPVTPKALTAGHKRSHPGYIPSHFPEFPDPHTYIKTPT 166
>gi|412990717|emb|CCO18089.1| predicted protein [Bathycoccus prasinos]
Length = 473
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 41/174 (23%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF-----------PQAG--- 262
+ Y+ LN LP D++ + W VP+ +S+RF+C R Y+Y F P+ G
Sbjct: 159 IDYVGNLNRALPDDVRALCWYAVPDGFSSRFNCTSRRYEYHFTRVVRQNLAPPPRGGEEA 218
Query: 263 --------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV----TSAWQ 310
LD+ M +A + LVGTHDFRN CKMNV + ++ R + + T
Sbjct: 219 GKCEPEEILDVGRMREACEKLVGTHDFRNFCKMNVKD-CRDYTRHIKECRIEKKNTERTT 277
Query: 311 NVQFNDIKEVVDSEPS--------------FKKGQGNEKPEIIQQLVDIEKYPR 350
+ V+ E S F+ G + P+II L+D+ K PR
Sbjct: 278 GALLRETDWVLIIEGSSFLWHMVRCIAAVLFQVGLRADAPDIIDDLLDLTKTPR 331
>gi|428184071|gb|EKX52927.1| hypothetical protein GUITHDRAFT_161113 [Guillardia theta CCMP2712]
Length = 419
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 25/161 (15%)
Query: 205 LTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLD 264
+++ G+ ELPYL+M+N LP I+ +AW F C R+YKY+F +A ++
Sbjct: 137 VSALGQVVSLRELPYLQMINALLPPTIRAIAW----------FACSMRSYKYFFVRADMN 186
Query: 265 IDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV-------TSAWQNVQFNDI 317
I+ M AA+ L G+HDFRN CK++ + F R + + T + +V DI
Sbjct: 187 IEGMRAAAKLLEGSHDFRNFCKIDSSKPNLTFTRHIISFDIIPVVEQETESRYSVWSMDI 246
Query: 318 KEV--------VDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
K + F G+G + + ++DI + P+
Sbjct: 247 KATAFLWHQVRAMAAILFAVGRGELEENFVSYMLDISRCPQ 287
>gi|378727214|gb|EHY53673.1| hypothetical protein HMPREF1120_01858 [Exophiala dermatitidis
NIH/UT8656]
Length = 713
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 37/146 (25%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFRNYKYWF------PQAG----- 262
+ELPY +LN LP DI+V+AW P P + ARF C R YKY+F P G
Sbjct: 300 DELPYANILNAILPPDIRVLAWCPDPPPNFDARFSCRQRRYKYFFTNPAFCPTPGPRGLR 359
Query: 263 -------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA 303
LDI+ M +AA+ L G HDFRNLCK++ + + +R +T+A
Sbjct: 360 STSAVAEGDEKQSQIREGWLDIEKMREAAKKLEGLHDFRNLCKIDPSKQMPSCERRITYA 419
Query: 304 GVTSAWQNVQFNDIKEVVDSEPSFKK 329
+ V++ D ++ S P+ +
Sbjct: 420 DI------VEWEDTGKMFSSHPALNQ 439
>gi|396082522|gb|AFN84131.1| tRNA pseudouridine synthase A [Encephalitozoon romaleae SJ-2008]
Length = 312
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 49/71 (69%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
+ D E Y MLNN LP DI+V+ W+PVP+ ++ARF C+ R Y+Y+F + GLDI+ M++
Sbjct: 114 KDDHKEYKYDIMLNNYLPSDIRVIGWAPVPDTFNARFTCIQRQYRYYFHKEGLDINEMNQ 173
Query: 271 AAQYLVGTHDF 281
AA + ++F
Sbjct: 174 AASRIKDINNF 184
>gi|253744705|gb|EET00865.1| Pseudouridylate synthase, putative [Giardia intestinalis ATCC
50581]
Length = 507
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 24/157 (15%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG-LDIDAMHKAAQY 274
E+ Y+ +N LP I+V+ W+PV E +SAR R Y Y F Q G L+I M +A
Sbjct: 204 EIDYVSAINMRLPETIRVLGWAPVDENFSARHSTSSRRYIYTFGQVGSLNIQRMAEACTT 263
Query: 275 LVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPSFKK----- 329
LVG HDFRN+CK ++ N V F+R++ + Q + + V + S
Sbjct: 264 LVGFHDFRNICKPSLDN-VKTFERVIFSCQLEIDGQPYECEGSRAAVSEDSSLSLVVCGS 322
Query: 330 -----------------GQGNEKPEIIQQLVDIEKYP 349
G E P II L+D+ ++P
Sbjct: 323 AFLYHQVRCIASLLLHIGAELEPPSIISDLLDVTRFP 359
>gi|401828224|ref|XP_003888404.1| tRNA pseudouridine synthase domain-containing protein
[Encephalitozoon hellem ATCC 50504]
gi|392999676|gb|AFM99423.1| tRNA pseudouridine synthase domain-containing protein
[Encephalitozoon hellem ATCC 50504]
Length = 314
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
E D E Y MLNN+LP DI+V+ W+PVP+ ++ARF C+ R Y+Y+F + GL+I+ M++
Sbjct: 114 EDDYREYKYDIMLNNHLPSDIRVIGWAPVPDTFNARFTCVQRQYRYYFHKEGLNINEMNE 173
Query: 271 AAQYLVGTHDFRNLCK 286
AA + +F K
Sbjct: 174 AASRIKRMENFYYFSK 189
>gi|72039431|ref|XP_797171.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Strongylocentrotus purpuratus]
Length = 285
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 15/131 (11%)
Query: 72 GTCAEV---TSVEDCYQRNWYKRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLA 128
TC+E T EDC + + ++ I E+G S +CELA R PM+ D+ +A
Sbjct: 23 ATCSEAGFTTGDEDCLE------TLAEIMQSYITELGQSSRAYCELACRSLPMVTDIGMA 76
Query: 129 LIELGIPIHGLDTYAKRPMRTVFPP---VAPSTQPKPLSILQAGVKQPHPPHIPPYLPLF 185
+ + G+ L +A+R + + P + P++ P S LQ G + HP +I +LP F
Sbjct: 77 MSQSGVDASELKQFARRKNKIIIPKQDRLRPTSDP---SGLQVGQRNKHPSYIYDHLPAF 133
Query: 186 PDPHAYIRTPV 196
PD H YI+TP
Sbjct: 134 PDSHTYIQTPT 144
>gi|449017039|dbj|BAM80441.1| pseudouridine synthase 3 [Cyanidioschyzon merolae strain 10D]
Length = 467
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 23/175 (13%)
Query: 196 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
VV+L +R P + N Y+ +LN LP ++V AW+PV + +SARF R YK
Sbjct: 159 VVSLLVRC----PPPGTGTNFYDYIHLLNRELPASVRVYAWAPVADDFSARFSAYSRTYK 214
Query: 256 YWFPQAGLD--IDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA----W 309
Y+ P D I +M AA+ +VG HDF N CK + N +R++ V A +
Sbjct: 215 YFVPNVFSDEGICSMVAAAKKMVGRHDFANFCKFDAETTKGNTERVILQCTVELAKDEFY 274
Query: 310 QNVQFNDIKEVVDSEPSF-------------KKGQGNEKPEIIQQLVDIEKYPRI 351
+ + I E +F + G+G E ++ L+ ++ PRI
Sbjct: 275 RALFPRGILEFTIEGQAFLYHQVRFMIALLLEIGRGTENISLVDSLLGLDGSPRI 329
>gi|303391559|ref|XP_003074009.1| tRNA pseudouridine synthase A [Encephalitozoon intestinalis ATCC
50506]
gi|303303158|gb|ADM12649.1| tRNA pseudouridine synthase A [Encephalitozoon intestinalis ATCC
50506]
Length = 317
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
ESD E Y +LN++LP DI+V+ W+PVP+ +SARF C+ R Y+Y+F + LD D M +
Sbjct: 113 ESDYKEYKYDMILNSHLPSDIRVIGWAPVPDTFSARFTCIQRQYRYYFHKEDLDADRMRE 172
Query: 271 AAQYLVGTHDFRNLCKMNVGNG 292
A + +F K + N
Sbjct: 173 MASRIKKMENFYYFSKHSDKNA 194
>gi|145527104|ref|XP_001449352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416940|emb|CAK81955.1| unnamed protein product [Paramecium tetraurelia]
Length = 414
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 48/71 (67%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGT 278
Y ++LN LP DI+++ V EK++AR+DC+ R YKY+F + +I+ M +A +G
Sbjct: 128 YAQILNRVLPEDIQILDECIVDEKFNARYDCIKRVYKYYFYKMDYNIELMTEAMLLFIGE 187
Query: 279 HDFRNLCKMNV 289
HDFRN CK++V
Sbjct: 188 HDFRNFCKLDV 198
>gi|308161029|gb|EFO63491.1| Pseudouridylate synthase, putative [Giardia lamblia P15]
Length = 515
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 24/159 (15%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG-LDIDAMHKAA 272
+ E+ Y+ +N LP I+V+ W+PV E +SAR R+Y Y F Q G L+I M +A
Sbjct: 209 EQEIDYVSAINMRLPETIRVLGWAPVDENFSARHSTSSRHYIYTFGQIGSLNIRRMAEAC 268
Query: 273 QYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPSFKK--- 329
LVG HDFRN+CK ++ + + F+R++ + Q + + + V+ S
Sbjct: 269 TKLVGFHDFRNICKPSL-DSIKTFERVIFSCYLEIDGQPYECENDRMVIKENSSLSLVVC 327
Query: 330 -------------------GQGNEKPEIIQQLVDIEKYP 349
G E P +I L++IE +P
Sbjct: 328 GSAFLYHQIRCIASLLLHIGAELEPPSLISDLLNIENFP 366
>gi|387592744|gb|EIJ87768.1| hypothetical protein NEQG_01840 [Nematocida parisii ERTm3]
gi|387595370|gb|EIJ92994.1| hypothetical protein NEPG_01949 [Nematocida parisii ERTm1]
Length = 326
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF---PQAGLDIDAMHK 270
+ + PY M+N +LP DI+V+ W V +++SARF C+ R Y+Y+F P + L+I+ M
Sbjct: 99 EKDYPYDIMINQHLPNDIRVLGWMFVDKEFSARFTCISREYEYYFSKRPASILNIETMKD 158
Query: 271 AAQYLVGTHDFRNLCK 286
A++ L+GTH F LCK
Sbjct: 159 ASKKLLGTHWFGRLCK 174
>gi|403170719|ref|XP_003330029.2| hypothetical protein PGTG_10939 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168860|gb|EFP85610.2| hypothetical protein PGTG_10939 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 210
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF-----PQA-GLDIDAMHKAA 272
Y ++N+ L ++V+AW PV + RF C R+YKY+F PQA GLDI+AM AA
Sbjct: 66 YNTIINSILHNSVRVLAWLPVHHDFDTRFSCQARHYKYFFSLYKSPQAPGLDIEAMKWAA 125
Query: 273 QYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
L+G HDF N K++ + +F+R + A +
Sbjct: 126 HRLIGEHDFHNFFKIDPSKQLTHFRRKILSAEI 158
>gi|342321070|gb|EGU13008.1| Pseudouridine synthase [Rhodotorula glutinis ATCC 204091]
Length = 670
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 41/133 (30%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFP-------------- 259
D E+PY+ +LN +LP I++ AWSP+ +S+R+ C++R+YKY+F
Sbjct: 222 DVEIPYVTLLNKHLPPSIRMHAWSPISATFSSRYSCIWRHYKYFFSTSPISPLLASRFDF 281
Query: 260 -----QAG----------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNG 292
AG LD+D M A + LVG HDFRNLCK++
Sbjct: 282 GAAYEAAGALPEHAAEWQERLRRVDWNGLQLDVDLMRDAVKRLVGEHDFRNLCKIDPPKQ 341
Query: 293 VVNFKRLVTHAGV 305
+ R V A +
Sbjct: 342 LKLHIRTVNSASI 354
>gi|330507400|ref|YP_004383828.1| tRNA pseudouridine synthase A [Methanosaeta concilii GP6]
gi|328928208|gb|AEB68010.1| tRNA pseudouridine synthase A [Methanosaeta concilii GP6]
Length = 271
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 46/80 (57%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
+ D +L + +N LPRDI AWS P +SAR++ L+R Y+Y GLD D M +
Sbjct: 66 DEDKIDLTRPRCVNGRLPRDIWTWAWSIAPVGFSARWNALWREYQYLLWHPGLDRDLMEE 125
Query: 271 AAQYLVGTHDFRNLCKMNVG 290
AA L+G HDFRN VG
Sbjct: 126 AADMLLGEHDFRNFSSAKVG 145
>gi|118350997|ref|XP_001008777.1| tRNA pseudouridine synthase A family protein [Tetrahymena
thermophila]
gi|89290544|gb|EAR88532.1| tRNA pseudouridine synthase A family protein [Tetrahymena
thermophila SB210]
Length = 481
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 28/142 (19%)
Query: 230 DIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNV 289
DI+++ S V ++ARFDC R YKY+F + +DI M +AA +G HDFRN CK++V
Sbjct: 196 DIRILGCSKVDPAFNARFDCQKRIYKYYFFENQMDIQRMKEAANLFLGEHDFRNFCKIDV 255
Query: 290 GNGVVNFKRLVTHAGVTSAWQNV----------------------QFNDIKEVVDSEPSF 327
+N+ R++ + N Q ++ ++ F
Sbjct: 256 LQ-TLNYVRIIYQLDIEEVQANFGTLDPRSKLYVATIQGSAFLWHQIRNMMAIL-----F 309
Query: 328 KKGQGNEKPEIIQQLVDIEKYP 349
G+ E+P I+ +L+DI+K P
Sbjct: 310 LVGRKQEEPSIVTELLDIQKNP 331
>gi|209882282|ref|XP_002142578.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris
RN66]
gi|209558184|gb|EEA08229.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris
RN66]
Length = 332
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 22/109 (20%)
Query: 197 VTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY 256
+++ +R++ TSP Y +M+N LP DI+++ + V +SARFDC R YKY
Sbjct: 90 ISINLRTRDTSP--------YNYQEMINGVLPWDIRILGFCQVNNNFSARFDCDSRVYKY 141
Query: 257 -------------WFPQAGLD-IDAMHKAAQYLVGTHDFRNLCKMNVGN 291
+FP+ ++ ID M+K+ + +GTHDFR CKM++ N
Sbjct: 142 IFPIDQIQNFEHNYFPKLNINHIDQMNKSCKQFIGTHDFRVFCKMDIKN 190
>gi|159118829|ref|XP_001709633.1| Pseudouridylate synthase, putative [Giardia lamblia ATCC 50803]
gi|157437750|gb|EDO81959.1| Pseudouridylate synthase, putative [Giardia lamblia ATCC 50803]
Length = 531
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG-LDIDAMHKAA 272
+ E+ Y+ +N LP I+V+ W+PV E +SAR R Y Y F + G L+I M +A
Sbjct: 225 EQEIDYVSAINMRLPETIRVLGWAPVDENFSARHSTSSRRYVYMFGEVGSLNIRRMAEAC 284
Query: 273 QYLVGTHDFRNLCKMNVGNGVVNFKRLV 300
LVG HDFRN+CK ++ + + F+R++
Sbjct: 285 TKLVGFHDFRNICKPSL-DSIKTFERVI 311
>gi|378754991|gb|EHY65019.1| hypothetical protein NERG_02075 [Nematocida sp. 1 ERTm2]
Length = 326
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ---AGLDIDAMHKA 271
E PY +LN +LP DI+V+ W V +++SARF C+ R Y+Y+F + + L I+ M
Sbjct: 99 KEYPYDLILNQHLPEDIRVLGWMFVDDQFSARFSCISREYEYYFSRRAGSSLSIEKMADE 158
Query: 272 AQYLVGTHDFRNLCK 286
+Q L+GTH F LCK
Sbjct: 159 SQKLLGTHWFGRLCK 173
>gi|378754020|gb|EHY64195.1| hypothetical protein NERG_02759, partial [Nematocida sp. 1 ERTm2]
Length = 194
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ---AGLDIDAMHKA 271
E PY +LN +LP DI+V+ W V +++SARF C+ R Y+Y+F + + L I+ M
Sbjct: 99 KEYPYDLILNQHLPEDIRVLGWMFVDDQFSARFSCISREYEYYFSKRAGSSLSIEKMADE 158
Query: 272 AQYLVGTHDFRNLCK 286
+Q L+GTH F LCK
Sbjct: 159 SQNLLGTHWFGRLCK 173
>gi|430768618|ref|NP_001258914.1| tRNA pseudouridine(38/39) synthase isoform 2 [Homo sapiens]
Length = 273
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 19/102 (18%)
Query: 268 MHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT--------SAWQN----VQFN 315
M AAQ VGTHDFRNLCKM+V NGV+NF+R + A V WQ QF
Sbjct: 1 MDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFE 60
Query: 316 DIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIEKYPR 350
+ F GQG EKPEII +L++IEK P+
Sbjct: 61 VTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQ 102
>gi|88603643|ref|YP_503821.1| tRNA pseudouridine synthase ACD [Methanospirillum hungatei JF-1]
gi|88189105|gb|ABD42102.1| tRNA pseudouridine synthase A [Methanospirillum hungatei JF-1]
Length = 276
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTH 279
++ LN LP DI V AW+ PE + R+D + R Y+Y+F + DI+AM AA +GTH
Sbjct: 86 VRALNGQLPPDIWVSAWAYAPESFYPRYDVIIRTYRYYFSRPPSDINAMRDAAGLFLGTH 145
Query: 280 DFRNLCKMNVGNGVVN 295
DFR ++ G V
Sbjct: 146 DFRCFARIEPGKSPVK 161
>gi|66361768|ref|XP_627406.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium
parvum Iowa II]
gi|46228868|gb|EAK89738.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium
parvum Iowa II]
Length = 283
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 82/183 (44%), Gaps = 47/183 (25%)
Query: 197 VTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY 256
V L+ R+K P Y++MLN LP DI+V+ + V +SARFDC +R YKY
Sbjct: 59 VNLRTRAKNLEP--------YNYMEMLNGVLPWDIRVIGYCEVRPDFSARFDCEYRLYKY 110
Query: 257 WFPQAG-------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV---------- 293
+FP + M+ AA+ +GTHD+R CKM++ N
Sbjct: 111 FFPLNHERTKISKFPKIPPEQVPLMNVAAKQFLGTHDYRRFCKMDLKNRKNQTYIRTIYE 170
Query: 294 --VNFK------RLVTHAGVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEII-QQLVD 344
+NF + T G W V+ + ++ F+ GQ PE+I Q L D
Sbjct: 171 FDINFVDENRTFAVATIKGSAFLWHQVRL--MMGIL-----FEIGQQKFNPEVITQMLTD 223
Query: 345 IEK 347
+E+
Sbjct: 224 VEQ 226
>gi|300175988|emb|CBK22205.2| unnamed protein product [Blastocystis hominis]
Length = 399
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 206 TSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF----------RNYK 255
++P + E Y +LN LP I++ W PV +SAR+ C R Y+
Sbjct: 96 SAPSSSTPVTEFDYASVLNKVLPPTIRITGWCPVDRSFSARYSCCGEDWAANLSAGRVYR 155
Query: 256 YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT 306
Y+F + D++ M A + G HDFRN C+++ N V +F R V V
Sbjct: 156 YYFLRRNYDVELMRSAVKLFEGEHDFRNFCRIDAVN-VCDFTRTVFRGDVV 205
>gi|441644257|ref|XP_004090575.1| PREDICTED: tRNA pseudouridine(38/39) synthase isoform 2 [Nomascus
leucogenys]
Length = 273
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 19/102 (18%)
Query: 268 MHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT--------SAWQN----VQFN 315
M AAQ VGTHDFRNLCKM+V NGVVNF+R + A V WQ QF
Sbjct: 1 MDYAAQKYVGTHDFRNLCKMDVANGVVNFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFE 60
Query: 316 DIKEVVDSEPS-------FKKGQGNEKPEIIQQLVDIEKYPR 350
+ F GQG EKPE+I +L++IEK P+
Sbjct: 61 VTGQAFLYHQVRCMMAILFLIGQGMEKPELIDELLNIEKNPQ 102
>gi|324511961|gb|ADY44966.1| Transcription initiation factor TFIID subunit 8 [Ascaris suum]
Length = 373
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 61/110 (55%), Gaps = 9/110 (8%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTY-----AKRPM 147
+T +I I E+G ++ F ELA R +DV++ALI+LGI + L + ++ +
Sbjct: 55 LTHMISSYILEMGVVTRQFTELAGRTISTPSDVVMALIDLGIAVTELPDFLAKCRSQGSL 114
Query: 148 RTVFPPV-APSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
P V AP P PL + G +PH PHIP LP FPDPH YIRT +
Sbjct: 115 VIAQPKVQAPPATPIPLRV---GNARPHHPHIPDSLPPFPDPHTYIRTEI 161
>gi|195996285|ref|XP_002108011.1| hypothetical protein TRIADDRAFT_52057 [Trichoplax adhaerens]
gi|190588787|gb|EDV28809.1| hypothetical protein TRIADDRAFT_52057 [Trichoplax adhaerens]
Length = 192
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 92 AVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIE-LGIPIHGL-DTYAKRPMRT 149
+T +I V+ E+G S FCE+++R +P L DV LI +G I + + Y P R
Sbjct: 33 TITEMIQSVLCEIGRCSQSFCEISSRTKPTLCDVEQTLINTVGFTIQDVANYYLHAPTRK 92
Query: 150 VFPP--VAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
+ P + +QPK ++ G P P +IP +LP P PH YIRTP
Sbjct: 93 ITSPEKLNEKSQPK---LMTVGTPLPLPSYIPDHLPPLPSPHTYIRTPT 138
>gi|300709217|ref|XP_002996775.1| hypothetical protein NCER_100100 [Nosema ceranae BRL01]
gi|239606099|gb|EEQ83104.1| hypothetical protein NCER_100100 [Nosema ceranae BRL01]
Length = 313
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 15/106 (14%)
Query: 196 VVTLKIRSKLTSPG-----EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 250
V ++KI+S L + D++E Y +LNN LP DI+V+ W+PV + +SARF C+
Sbjct: 95 VASVKIKSLLRENTSRYFLNDDDNHEFNYQAILNNYLPEDIRVIGWAPVEDGFSARFTCI 154
Query: 251 FRNYKYWFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCK 286
R Y+Y+F + DI+ M + Q ++ +F NL K
Sbjct: 155 KRKYRYYFTNPFVKIKNQIRLKYDINKMEEMCQKILTLKNFYNLSK 200
>gi|67624003|ref|XP_668284.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54659475|gb|EAL38050.1| hypothetical protein Chro.80602 [Cryptosporidium hominis]
Length = 210
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 39/160 (24%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG-------------LDID 266
++MLN LP DI+V+ + V +SARFDC +R YKY+FP +
Sbjct: 1 MEMLNGVLPWDIRVIGYCEVRPDFSARFDCEYRLYKYFFPLNHERTKISKFPKIPPEQVP 60
Query: 267 AMHKAAQYLVGTHDFRNLCKMNVGNGV------------VNFK------RLVTHAGVTSA 308
M AA+ +GTHD+R CKM++ N +NF + T G
Sbjct: 61 LMDIAAKQFLGTHDYRRFCKMDLKNRKNQTYIRTIYEFDINFVDENRTFAVATIKGSAFL 120
Query: 309 WQNVQFNDIKEVVDSEPSFKKGQGNEKPEII-QQLVDIEK 347
W V+ + F+ GQ PE+I Q L D+E+
Sbjct: 121 WHQVR-------LMMGILFEIGQQKFNPEVITQMLTDVEQ 153
>gi|428671151|gb|EKX72069.1| tRNA pseudouridine synthase A, putative [Babesia equi]
Length = 264
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFR 282
+N +LP+ I+V + + VP +SAR DC +R YKY+F +DI M +A QY VG H+F
Sbjct: 126 INKHLPKYIRVNSIAIVPPNFSARGDCTYRIYKYYFQPENMDIYLMREACQYFVGHHNFT 185
Query: 283 NLCKMNVGN 291
CK + N
Sbjct: 186 QFCKTDKRN 194
>gi|307352726|ref|YP_003893777.1| tRNA pseudouridine synthase A [Methanoplanus petrolearius DSM
11571]
gi|307155959|gb|ADN35339.1| tRNA pseudouridine synthase A [Methanoplanus petrolearius DSM
11571]
Length = 261
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTH 279
+ +N LP DI+ W+ VPE ++ RF+ R Y+Y+FP LD M AA+YL G H
Sbjct: 76 VSAINRKLPGDIRCRGWAGVPEGFNPRFEVSERIYRYFFPDGNLDWGKMSLAAEYLPGVH 135
Query: 280 DFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVV-------DSEPSFKKGQG 332
DF ++ N +R + A + + + F E S + G G
Sbjct: 136 DFSRFARVEGKNP----ERKIFLAEIIPDKEGIIFEIRGESFLWNMVRCISHALWLVGSG 191
Query: 333 NEKPEIIQQLVDIEKYPRIKSA 354
+E PE+I + PR +A
Sbjct: 192 SESPEVISAALSNTDGPRFPAA 213
>gi|374628788|ref|ZP_09701173.1| tRNA pseudouridine synthase A [Methanoplanus limicola DSM 2279]
gi|373906901|gb|EHQ35005.1| tRNA pseudouridine synthase A [Methanoplanus limicola DSM 2279]
Length = 260
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFR 282
+N LP DI A++ V + Y+ R+D R Y+Y+F + GLD ++M KA+QY+ G HDF
Sbjct: 79 INEKLPGDIWCFAYAEVDDSYNPRYDVFSRKYRYYFYEEGLDHESMQKASQYIKGVHDFT 138
Query: 283 NLCKM 287
+ K+
Sbjct: 139 SFAKI 143
>gi|325105198|ref|YP_004274852.1| tRNA pseudouridine synthase A [Pedobacter saltans DSM 12145]
gi|324974046|gb|ADY53030.1| tRNA pseudouridine synthase A [Pedobacter saltans DSM 12145]
Length = 258
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 33/194 (17%)
Query: 194 TPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253
T V + + + E S+++E+ +LK +N+ LP DI V V E ARFD + R+
Sbjct: 56 TGVHATQFYAHFDTEKEFSENSEIRFLKGINSLLPYDIAVKHLHQVHEDAHARFDAIRRS 115
Query: 254 YKY--------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN---- 295
Y+Y W + L++DAM+ A Y++ DF CK N GN N
Sbjct: 116 YEYHIHFNKNPFKTYTSWLHKEPLNVDAMNIGASYILDYEDFGAFCKANAGNFTNNCIVS 175
Query: 296 -FKRLVTHAGVTSAWQNVQF--NDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPRIK 352
+ V + G+ +F N ++ +V + G+G PE I+ +++ +K
Sbjct: 176 RAEWEVKNDGIIFHITANRFLRNMVRAIVGTLTDI--GKGKYAPEHIKHIIESKKR---- 229
Query: 353 SAQFPWSSTGATTP 366
SS GA+ P
Sbjct: 230 ------SSAGASVP 237
>gi|384248464|gb|EIE21948.1| hypothetical protein COCSUDRAFT_66754 [Coccomyxa subellipsoidea
C-169]
Length = 624
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 101 IKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP-PVAP-ST 158
+ E+G SH + ELA R L+DVLLA ++G+ + L YA F PVA
Sbjct: 42 VAELGTASHSYAELACRTSTNLSDVLLAFEDMGVRMEDLIQYANAEEEVPFACPVAKYPV 101
Query: 159 QPKPLSILQAGVKQPHPP-HIPPYLPLFPDPHAYIRTPV 196
+P+++ ++ PP H+P YLP FPD H Y+ TP
Sbjct: 102 SKRPVTLPTFADRKEEPPMHVPEYLPAFPDKHTYVATPA 140
>gi|70952957|ref|XP_745611.1| tRNA pseudouridine synthase [Plasmodium chabaudi chabaudi]
gi|56525989|emb|CAH74339.1| tRNA pseudouridine synthase, putative [Plasmodium chabaudi
chabaudi]
Length = 279
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 199 LKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF 258
L IR K+ P E YLK LN L ++I++V VP + AR +C+ R Y Y+F
Sbjct: 49 LTIRLKIKYPHLSISIIEKIYLKELNKKL-KNIQIVHIQCVPNNFDARLNCIQRTYLYFF 107
Query: 259 PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ----- 313
+I M++AA+ +G HDF N CK ++F R + + QN
Sbjct: 108 VNKNYNIPRMNEAAKIFLGEHDFSNFCKK--RKNTISFIRTIHKFEIKRIDQNFYYFKIK 165
Query: 314 -----FNDIKEVVDSEPSFKKGQGNE 334
+N I+ +V S KGQ +E
Sbjct: 166 GTSFLYNQIRHMVASLFLVGKGQLDE 191
>gi|341902834|gb|EGT58769.1| hypothetical protein CAEBREN_14997 [Caenorhabditis brenneri]
Length = 494
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 101 IKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFPPVAPSTQP 160
IK +G S CE+A R DV LI +GIP+ L + + + + AP P
Sbjct: 100 IKRIGEQSRLACEIAGRTIVTPGDVWFGLINMGIPVKTLADFHQDQLGSALTVHAPEITP 159
Query: 161 --KPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
L+ G +PHP ++ +LP FPDPH YI+T +
Sbjct: 160 PDAKTQALRIGTPRPHPNYVYDWLPPFPDPHTYIKTEI 197
>gi|116754296|ref|YP_843414.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT]
gi|121692939|sp|A0B7V0.1|TRUA_METTP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|116665747|gb|ABK14774.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT]
Length = 267
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
E D L + +++N+ LP D+ A + P +SAR+ L+R Y+Y+ +D+ A+ +
Sbjct: 66 EEDRAYLAFPRVINSLLPSDVWAWARAVAPVGFSARWSALWREYRYFLFSPDIDLSAVRE 125
Query: 271 AAQYLVGTHDFRNLCKMNV 289
AA +LVGTHDFRN V
Sbjct: 126 AAGHLVGTHDFRNFSMSKV 144
>gi|156088547|ref|XP_001611680.1| tRNA pseudouridine synthase A family protein [Babesia bovis]
gi|154798934|gb|EDO08112.1| tRNA pseudouridine synthase A family protein [Babesia bovis]
Length = 248
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 181 YLPLFPDPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVP 240
Y FPDP +P T+ + P + + K +N +LPR I+V VP
Sbjct: 75 YASFFPDP-CPPNSPCSTVSPDERGVGPCYRIN----TFTKAINKHLPRGIRVNWVKHVP 129
Query: 241 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
+ +S+R +C FR YKY+F +D+ + A ++ +G H+F CK + N
Sbjct: 130 DDFSSRRNCTFRVYKYFFQLGSMDLSLIQDACRHFLGQHNFNQFCKTDNRN 180
>gi|341900979|gb|EGT56914.1| hypothetical protein CAEBREN_14346 [Caenorhabditis brenneri]
Length = 509
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 101 IKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFPPVAPSTQP 160
IK +G S CE+A R DV LI +GIP+ L + + + + AP P
Sbjct: 114 IKRIGEQSRLACEIAGRTIVTPGDVWFGLINMGIPVKTLADFHQDQLGSALTVHAPEITP 173
Query: 161 --KPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
L+ G +PHP ++ +LP FPDPH YI+T +
Sbjct: 174 PDAKTQALRIGTPRPHPNYVYDWLPPFPDPHTYIKTEI 211
>gi|333026542|ref|ZP_08454606.1| putative tRNA pseudouridine synthase A [Streptomyces sp. Tu6071]
gi|332746394|gb|EGJ76835.1| putative tRNA pseudouridine synthase A [Streptomyces sp. Tu6071]
Length = 284
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 17/88 (19%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFP-QAG---------------- 262
LK L LP+D++V +P PE + ARF ++R Y Y QAG
Sbjct: 81 LKRLAGRLPKDVRVWRVAPAPEGFEARFSAIWRRYAYRVADQAGGVDPLLRGHVLWHDRP 140
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LDIDAM++AA+ L+G HDF CK G
Sbjct: 141 LDIDAMNEAAEGLLGEHDFAAYCKKREG 168
>gi|302519630|ref|ZP_07271972.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB78]
gi|318058099|ref|ZP_07976822.1| tRNA pseudouridine synthase A [Streptomyces sp. SA3_actG]
gi|302428525|gb|EFL00341.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB78]
Length = 284
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 17/88 (19%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFP-QAG---------------- 262
LK L LP+D++V +P PE + ARF ++R Y Y QAG
Sbjct: 81 LKRLAGRLPKDVRVWRVAPAPEGFDARFSAIWRRYAYRVADQAGGVDPLLRGHVLWHDRP 140
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LDIDAM++AA+ L+G HDF CK G
Sbjct: 141 LDIDAMNEAAEGLLGEHDFAAYCKKREG 168
>gi|318079697|ref|ZP_07987029.1| tRNA pseudouridine synthase A [Streptomyces sp. SA3_actF]
Length = 282
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 17/88 (19%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFP-QAG---------------- 262
LK L LP+D++V +P PE + ARF ++R Y Y QAG
Sbjct: 79 LKRLAGRLPKDVRVWRVAPAPEGFDARFSAIWRRYAYRVADQAGGVDPLLRGHVLWHDRP 138
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LDIDAM++AA+ L+G HDF CK G
Sbjct: 139 LDIDAMNEAAEGLLGEHDFAAYCKKREG 166
>gi|391330744|ref|XP_003739814.1| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Metaseiulus occidentalis]
Length = 247
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T V+ + E+ + + EL R + ADV LA+++ GI + GL + +RP +
Sbjct: 40 LTEVLQATLIEICHSAKAYAELGGRTEASGADVCLAIVDSGIRMEGLKEFIRRPRKVTL- 98
Query: 153 PVAPSTQPKPLS--ILQAGVKQPHPPHIPPYLPLFPDPHAYI-----RTPVVT-LKIRSK 204
AP QP+ + LQ G ++ P +IP + P FPD HAY+ R PV + IR K
Sbjct: 99 -SAPMAQPRVSTPRTLQTGERKNLPNYIPDHFPPFPDSHAYVHTSTHRQPVTEYVAIREK 157
Query: 205 LTS 207
L S
Sbjct: 158 LAS 160
>gi|399215855|emb|CCF72543.1| unnamed protein product [Babesia microti strain RI]
Length = 270
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 215 NELPYLKMLNNN-----LPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMH 269
N +P L ++N N LP DI + PV +S R+DC R YKY+F L I M
Sbjct: 82 NNIPKLHLMNINRLNKYLPNDICITKIFPVHSTFSCRYDCKGRIYKYFFNSTNLKICEMA 141
Query: 270 KAAQYLVGTHDFRNLCKMNVG 290
+AAQ +G HDF+ K N G
Sbjct: 142 EAAQLFIGEHDFKLFSKRNRG 162
>gi|402593372|gb|EJW87299.1| bromodomain associated family protein [Wuchereria bancrofti]
Length = 261
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRT--- 149
+T +I I E+ + E A R +D ++AL++LG + L + K
Sbjct: 90 LTHMINSYINELAVTTRQMTEHAGRTISTPSDTIMALVDLGTAVSSLPAFLKEATSKGSL 149
Query: 150 VFPPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
V P P L+ G +P PPHIP +LP FPDPH Y+RT +
Sbjct: 150 VIAPPRVQQASHPQQQLRVGSSRPRPPHIPDWLPPFPDPHTYVRTDI 196
>gi|284161452|ref|YP_003400075.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631]
gi|284011449|gb|ADB57402.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631]
Length = 262
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 221 KMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHD 280
+M N +LP D+ AW+ V EK++ R R Y Y P G DI AM KA++ L+GTHD
Sbjct: 74 RMFNAHLPEDVTFWAWTEVDEKFNPR-HAKSRTYVYVMPAEGYDISAMRKASKLLLGTHD 132
Query: 281 FRNLCK 286
F N K
Sbjct: 133 FSNFTK 138
>gi|170577083|ref|XP_001893875.1| Bromodomain associated family protein [Brugia malayi]
gi|158599850|gb|EDP37289.1| Bromodomain associated family protein [Brugia malayi]
Length = 349
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRT--- 149
+T +I I E+ + E A R +D ++AL++LG + L + K
Sbjct: 55 LTHMINSYINELAVTTRQMTEHAGRTISTPSDTIMALVDLGTAVSSLPAFLKEATSKGSL 114
Query: 150 VFPPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
V P P L+ G +P PPHIP +LP FPDPH Y+RT +
Sbjct: 115 VIAPPRVQQASHPQQQLRVGSSRPRPPHIPDWLPPFPDPHTYVRTDI 161
>gi|27262396|gb|AAN87479.1| tRNA pseudouridine synthase A [Heliobacillus mobilis]
Length = 249
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 30/147 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------WFPQAGLD 264
+N+ LP+DI VV V E + +RF L ++Y+Y +P L
Sbjct: 75 MNSLLPKDIAVVKAETVAEDFHSRFGALGKHYRYSIYNHRIHSPFHHRYSYQVYPP--LH 132
Query: 265 IDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKE----- 319
+ AM +AA Y VGTHDFR C G+ V +F R + H +T +N+ D+
Sbjct: 133 VAAMQEAAGYFVGTHDFRGFCA--TGSPVKDFVRTIWHCTLTVTEENLLLMDVMGDGFLY 190
Query: 320 ---VVDSEPSFKKGQGNEKPEIIQQLV 343
+ + G+G PE I Q++
Sbjct: 191 NMVRIITGTLVDVGKGKIAPESIPQII 217
>gi|295838433|ref|ZP_06825366.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB74]
gi|197695769|gb|EDY42702.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB74]
Length = 284
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 19/89 (21%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------WFPQA 261
LK L LP+D++V +P PE + ARF ++R Y Y W +
Sbjct: 81 LKRLAGRLPKDVRVWRVAPAPEGFDARFSAIWRRYAYRVADQPGGADPLLRGHVLWHDRP 140
Query: 262 GLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LDIDAM++AA+ L+G HDF CK G
Sbjct: 141 -LDIDAMNEAAEGLLGEHDFAAYCKKREG 168
>gi|29831498|ref|NP_826132.1| tRNA pseudouridine synthase A [Streptomyces avermitilis MA-4680]
gi|38258718|sp|Q82DM1.1|TRUA_STRAW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|29608614|dbj|BAC72667.1| putative pseudouridine synthase [Streptomyces avermitilis MA-4680]
Length = 285
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 19/101 (18%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------- 256
PGE +++ LK L LP+D++V + + P ++ARF ++R Y Y
Sbjct: 79 PGELWAEHQEKLLKRLAGRLPKDVRVWSLTEAPSGFNARFSAIWRRYAYRVTDNTGGVDP 138
Query: 257 -------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W LD+DAM++AA+ LVG HDF CK G
Sbjct: 139 LLRSHVLWHDWP-LDVDAMNEAARRLVGEHDFAAYCKKREG 178
>gi|440792079|gb|ELR13307.1| hypothetical protein ACA1_238410 [Acanthamoeba castellanii str.
Neff]
Length = 302
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 57/117 (48%), Gaps = 16/117 (13%)
Query: 101 IKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFPP--VAPST 158
I+EVG +H + ELA R + DV L ELG+ + L Y+ T FP AP
Sbjct: 11 IEEVGHRAHLYAELAGRIEANFNDVRLTFDELGLDLRELSHYSATLDETPFPKGTRAPLH 70
Query: 159 QPKPLSILQAGVK--------------QPHPPHIPPYLPLFPDPHAYIRTPVVTLKI 201
P L++ + VK +P PPHIPP+LP FP HAYI +P ++
Sbjct: 71 PPSSLAMPEWPVKKKKGRAAPGLKDPEEPLPPHIPPFLPAFPSKHAYIASPAYQERL 127
>gi|294630922|ref|ZP_06709482.1| tRNA pseudouridine synthase A [Streptomyces sp. e14]
gi|292834255|gb|EFF92604.1| tRNA pseudouridine synthase A [Streptomyces sp. e14]
Length = 284
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 19/89 (21%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------WFPQA 261
LK L LPRD++V A P P ++ARF ++R Y Y W
Sbjct: 90 LKRLAGRLPRDVRVWALRPAPSGFNARFSAVWRRYAYRVTDNPGGVDPLLRGHVLWHDWP 149
Query: 262 GLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD+DAM++AA+ L+G HDF CK G
Sbjct: 150 -LDVDAMNEAARRLLGEHDFAAYCKKREG 177
>gi|456389439|gb|EMF54879.1| truA protein [Streptomyces bottropensis ATCC 25435]
Length = 288
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 19/89 (21%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------WFPQA 261
LK L LPRD++V A P ++ARF ++R Y Y W A
Sbjct: 90 LKRLAGRLPRDVRVWALREAPSGFNARFSAVWRRYAYRVTDNPGGVDPLLRSHVLWHDWA 149
Query: 262 GLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD+DAM++AA+ L+G HDF CK G
Sbjct: 150 -LDVDAMNEAARLLLGEHDFAAYCKRREG 177
>gi|308464256|ref|XP_003094396.1| CRE-TAF-8 protein [Caenorhabditis remanei]
gi|308247818|gb|EFO91770.1| CRE-TAF-8 protein [Caenorhabditis remanei]
Length = 504
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 50/192 (26%)
Query: 10 SLLKSSVVALLAEVGFDAADNAALETLVEICQACKYTCLTVTAKVLSSHKEREKEDRIGE 69
++L+ V A+ + GFD + ALETL+ + +C + +
Sbjct: 68 NVLEQVVTAMCYKSGFDDIEEGALETLMLLFHSCSF---------------------FSQ 106
Query: 70 SEGTCAEVTSVEDCYQRNWYKRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLAL 129
+G + IK +G S CE+A R DV AL
Sbjct: 107 KKGFIVKFPD---------------------IKRIGEQSRLGCEVAGRTIVSPGDVWFAL 145
Query: 130 IELGIPIHGLDTYAKRPM---RTVFPP--VAPSTQPKPLSILQAGVKQPHPPHIPPYLPL 184
I +GI + L + + + TV PP + P + + L I G +PHP ++ +LP
Sbjct: 146 INMGISVKELSDFQQDQIVSSLTVHPPEIIPPEAKTQALRI---GTPRPHPNYVFEWLPP 202
Query: 185 FPDPHAYIRTPV 196
PDPH YI+T +
Sbjct: 203 LPDPHTYIKTEI 214
>gi|294101662|ref|YP_003553520.1| tRNA pseudouridine synthase A [Aminobacterium colombiense DSM
12261]
gi|293616642|gb|ADE56796.1| tRNA pseudouridine synthase A [Aminobacterium colombiense DSM
12261]
Length = 271
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 25/151 (16%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDID 266
+N LP ++++ PV E +SARF L+R Y+Y W+ + D
Sbjct: 78 INFYLPETVRIMGVFPVEESFSARFCALWREYRYYIWHGPAFPPYLAQRAWWNRWQWDKT 137
Query: 267 AMHKAAQYLVGTHDFRNLCKM-----NVGNGVVNFKRLVT-HAGVTSAWQN-VQFNDIKE 319
A+ KA +YL GTH+F+ C + + ++ K L + H V + N N ++
Sbjct: 138 AVKKACEYLEGTHNFKAFCPIKECPEDTVRTILRIKYLRSGHLSVITVRGNSFLMNMVRS 197
Query: 320 VVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
+V S G+G PE I++L+D EK R
Sbjct: 198 IVGSLDLV--GKGKNDPEWIKELLDDEKKDR 226
>gi|221054442|ref|XP_002258360.1| tRNA pseudouridine synthase [Plasmodium knowlesi strain H]
gi|193808429|emb|CAQ39132.1| tRNA pseudouridine synthase, putative [Plasmodium knowlesi strain
H]
Length = 306
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 198 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW 257
L IR K+ P D + Y+K +N L ++++V+ VP + AR +C+ R Y Y+
Sbjct: 68 ALTIRLKIRHPHMTLQDIQRVYVKEINKKL-KNMQVIDIRSVPNFFDARLNCIHRTYLYF 126
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDI 317
F + D + + + VG HDF N CK + F+R + V +N + I
Sbjct: 127 FIDKNYNFDRIKQGCKLFVGEHDFSNFCKKRKNSTC--FRRTILKFEVRRMDKNFHYFKI 184
Query: 318 K 318
K
Sbjct: 185 K 185
>gi|268529374|ref|XP_002629813.1| C. briggsae CBR-TAF-8 protein [Caenorhabditis briggsae]
Length = 482
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 101 IKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFPPVAPSTQP 160
IK +GG S CE+A R DV L+ +GI + L + + + + AP P
Sbjct: 102 IKRIGGQSRLACEMAGRTLVSPGDVWFGLVNMGIHVRELSDFHQDQVISALTVHAPEIIP 161
Query: 161 KPL--SILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
L+ G +PHP ++ +LP PDPH YI+T +
Sbjct: 162 PEAKNQALRIGTPRPHPNYVYEWLPPLPDPHTYIKTEI 199
>gi|288560959|ref|YP_003424445.1| tRNA pseudouridine synthase A TruA [Methanobrevibacter ruminantium
M1]
gi|288543669|gb|ADC47553.1| tRNA pseudouridine synthase A TruA [Methanobrevibacter ruminantium
M1]
Length = 290
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFR 282
+NN+LP DI+++AW+PV + RF R Y+Y + LDID + K A+ GTHDF
Sbjct: 79 INNSLPDDIQIIAWAPVRFGFKPRF-AKRRWYRYILFEEDLDIDLLRKTAEVFKGTHDFT 137
Query: 283 NLCK 286
N K
Sbjct: 138 NFTK 141
>gi|406835551|ref|ZP_11095145.1| tRNA pseudouridine synthase A [Schlesneria paludicola DSM 18645]
Length = 316
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAG 262
+L L LP +I V P PE ++AR+D + Y+Y + ++
Sbjct: 114 FLHGLAQYLPDEIVVRDVQPAPEGFNARYDAQRKWYRYVIHNSVIRRPFLRNAVLWQRSR 173
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVD 322
LD DAMH A QYLVGTHDFR C + + R + HA V+ A + D+ V
Sbjct: 174 LDHDAMHAAVQYLVGTHDFR--CFESNWPNRSSSVRTIMHASVSRAAGWDVWEDLAPTVP 231
Query: 323 SEPSFKKG 330
EP G
Sbjct: 232 GEPRQASG 239
>gi|304314991|ref|YP_003850138.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis
str. Marburg]
gi|302588450|gb|ADL58825.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis
str. Marburg]
Length = 273
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA-GLDIDAMHKAAQYLVG 277
++ +N+ LP DIKV+AW+ V + R+ L R+Y+Y + +DIDAM KAA++ G
Sbjct: 75 HVNQINDLLPHDIKVLAWASVMYPFKVRY-PLERHYRYILHRGESMDIDAMAKAAEHFRG 133
Query: 278 THDFRNLCKMNVGNGV--VNFKR--------LVTHAGVTSAWQNVQ 313
THDF N + N + +N R LV G + WQ V+
Sbjct: 134 THDFSNFSRRRDRNPIRKINDVRVSEDDNSILVDVYGESFLWQMVR 179
>gi|393907354|gb|EFO16573.2| bromodomain associated family protein [Loa loa]
Length = 339
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMR---- 148
+T ++ I E+ + E A R +D ++AL++LG + L ++ K
Sbjct: 46 LTHMVNSYINELAATTRQMTEHAGRTISTPSDTIMALVDLGTAVSNLPSFLKEATSKGSL 105
Query: 149 TVFPP---VAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
+ PP A TQ + L+ G +P P H+P +LP FPDPH Y+RT +
Sbjct: 106 VIAPPRVQQASHTQQQ----LRVGSSRPRPSHVPDWLPPFPDPHTYVRTDI 152
>gi|327401434|ref|YP_004342273.1| tRNA pseudouridine synthase A [Archaeoglobus veneficus SNP6]
gi|327316942|gb|AEA47558.1| tRNA pseudouridine synthase A [Archaeoglobus veneficus SNP6]
Length = 290
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 221 KMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHD 280
+++N NLP DI V AW+ VP+ ++ R+ R Y Y DI AM KAA+ L+GTHD
Sbjct: 100 RVINANLPDDIVVWAWAKVPDDFNPRY-ATSRTYIYVLYSREYDISAMRKAAKLLLGTHD 158
Query: 281 FRNLCKMNVGNG 292
F N K G G
Sbjct: 159 FTNFTK-KFGEG 169
>gi|269862295|ref|XP_002650782.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
gi|220065627|gb|EED43275.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
Length = 241
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%)
Query: 210 EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMH 269
++ D ELPY +LN LP I+V W+PVP +SAR +C R Y Y+F +
Sbjct: 52 KKHDAKELPYDLILNKVLPPQIRVKGWAPVPWNFSARHNCCQRRYTYFFTCPPQLLPKYQ 111
Query: 270 KAAQYLVGTHDFRNLCKMNVGNGVVNFK 297
+A + + T DF N C + + FK
Sbjct: 112 EAGRIIYKTEDFYNFCTHSKVDANYKFK 139
>gi|68072249|ref|XP_678038.1| tRNA pseudouridine synthase [Plasmodium berghei strain ANKA]
gi|56498378|emb|CAH98757.1| tRNA pseudouridine synthase, putative [Plasmodium berghei]
Length = 281
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Query: 193 RTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 252
R +T+++++K P E YLK LN L ++I+++ VP + AR +C+ R
Sbjct: 46 RMNALTIRLKNKY--PHLSISIIEKIYLKELNKKL-KNIQIIHIQCVPNNFDARLNCIQR 102
Query: 253 NYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNV 312
Y Y+F +I M++A + +G H+F N CK N +F R + + + QN
Sbjct: 103 TYVYFFINKNYNITKMNEATKIFLGEHNFSNFCKKRKNN--TSFIRTIHKFEIKNIDQNF 160
Query: 313 QFNDIK 318
+ IK
Sbjct: 161 YYFKIK 166
>gi|269866402|ref|XP_002652261.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
gi|220062857|gb|EED41795.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
Length = 268
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%)
Query: 210 EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMH 269
++ D ELPY +LN LP I+V W+PVP +SAR +C R Y Y+F +
Sbjct: 169 KKHDAKELPYDLILNKVLPPQIRVKGWAPVPWNFSARHNCCQRRYTYFFTCPPQLLPKYQ 228
Query: 270 KAAQYLVGTHDFRNLCKMNVGNGVVNFK 297
+A + + T DF N C + + FK
Sbjct: 229 EAGRIIYKTEDFYNFCTHSKVDANYKFK 256
>gi|383823735|ref|ZP_09978924.1| tRNA pseudouridine synthase A [Mycobacterium xenopi RIVM700367]
gi|383338725|gb|EID17088.1| tRNA pseudouridine synthase A [Mycobacterium xenopi RIVM700367]
Length = 292
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 32/136 (23%)
Query: 182 LPLFPDPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPE 241
+P+ PHAY R+P S+ LP ++ L LP D++V P+
Sbjct: 77 VPVEALPHAYPRSP--------------RRSEPEFLPLVRRLGRFLPTDVRVRDIRRAPK 122
Query: 242 KYSARFDCLFRNYKYWF--------PQAG---------LDIDAMHKAAQYLVGTHDFRNL 284
+ ARF L R+Y Y PQ LDID M A++ LVG HDF
Sbjct: 123 GFDARFSALRRHYVYRLSTAPYGAEPQQARYVTVWPRELDIDVMAAASRELVGLHDFAAF 182
Query: 285 CKMNVGNGVV-NFKRL 299
C+ VG + + +RL
Sbjct: 183 CRHRVGATTIRDLQRL 198
>gi|269862152|ref|XP_002650725.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
gi|220065712|gb|EED43331.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
Length = 319
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%)
Query: 210 EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMH 269
++ D ELPY +LN LP I+V W+PVP +SAR +C R Y Y+F +
Sbjct: 176 KKHDAKELPYDLILNKVLPPQIRVKGWAPVPWNFSARHNCCQRRYTYFFTCPPQLLPKYQ 235
Query: 270 KAAQYLVGTHDFRNLCKMNVGNGVVNFK 297
+A + + T DF N C + + FK
Sbjct: 236 EAGRIIYKTEDFYNFCTHSKVDANYKFK 263
>gi|312092893|ref|XP_003147495.1| bromodomain associated family protein [Loa loa]
Length = 390
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMR---- 148
+T ++ I E+ + E A R +D ++AL++LG + L ++ K
Sbjct: 97 LTHMVNSYINELAATTRQMTEHAGRTISTPSDTIMALVDLGTAVSNLPSFLKEATSKGSL 156
Query: 149 TVFPP---VAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
+ PP A TQ + L+ G +P P H+P +LP FPDPH Y+RT +
Sbjct: 157 VIAPPRVQQASHTQQQ----LRVGSSRPRPSHVPDWLPPFPDPHTYVRTDI 203
>gi|268608385|ref|ZP_06142112.1| tRNA pseudouridine synthase A [Ruminococcus flavefaciens FD-1]
Length = 257
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 16/85 (18%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQ 260
L + + +N LP DI +++ VP + ARFDC + Y Y + +
Sbjct: 73 LGFCRGVNGELPDDISILSCEEVPIDFHARFDCKGKEYIYKMHCSESKDPFAPDMKFHYR 132
Query: 261 AGLDIDAMHKAAQYLVGTHDFRNLC 285
DI+A KAAQY VGTHDF + C
Sbjct: 133 RPFDIEAARKAAQYFVGTHDFSSFC 157
>gi|418471395|ref|ZP_13041218.1| tRNA pseudouridine synthase A [Streptomyces coelicoflavus ZG0656]
gi|371548040|gb|EHN76378.1| tRNA pseudouridine synthase A [Streptomyces coelicoflavus ZG0656]
Length = 284
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 19/101 (18%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------- 256
P E ++ + LK L LPRD++V A P ++ARF ++R Y Y
Sbjct: 78 PREVWAEHHVKLLKRLAGRLPRDVRVWALREAPSGFNARFSAVWRRYAYRVTDNPGGVDP 137
Query: 257 -------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W LD+DAM++AA+ L+G HDF CK G
Sbjct: 138 LLRGHVLWHDWP-LDVDAMNEAARGLLGEHDFAAYCKKREG 177
>gi|375093454|ref|ZP_09739719.1| pseudouridylate synthase I [Saccharomonospora marina XMU15]
gi|374654187|gb|EHR49020.1| pseudouridylate synthase I [Saccharomonospora marina XMU15]
Length = 295
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 32/139 (23%)
Query: 209 GEESDDNELPYLKML----NNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------W- 257
G D+ +P L L N LP D++V+A P + ARF + R+Y Y W
Sbjct: 91 GLAVDEQGVPDLARLRHRWNRILPPDVRVLAADVAPTGFDARFSAMRRHYLYKVSDAPWG 150
Query: 258 -----------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV-NFKRLVTHAGV 305
+P+A L ++ M+KAA YL+G HDF CK G + + +RL
Sbjct: 151 VDPLRRRDTLAWPRA-LAVETMNKAAHYLIGLHDFAAFCKQREGATTIRHLQRL------ 203
Query: 306 TSAWQNVQFNDIKEVVDSE 324
+W+ V ++I +V ++
Sbjct: 204 --SWRRVDEHEIHAIVSAD 220
>gi|71998708|ref|NP_001022514.1| Protein TAF-8, isoform b [Caenorhabditis elegans]
gi|33300435|emb|CAE18043.1| Protein TAF-8, isoform b [Caenorhabditis elegans]
Length = 497
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 101 IKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFPPVAPSTQP 160
IK +G S CE+A R DV L+ +GI ++ L + + + + AP P
Sbjct: 105 IKRIGEQSRFACEVAGRTIVTPGDVWFGLVNMGIKVNQLSDFHQDQIISALTVHAPEIIP 164
Query: 161 KPL--SILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
L+ G +PHP ++ +LP PDPH YI+T +
Sbjct: 165 PEAKNQALRIGTPRPHPSYVYEWLPPLPDPHTYIKTEI 202
>gi|71998704|ref|NP_001022513.1| Protein TAF-8, isoform a [Caenorhabditis elegans]
gi|17645991|emb|CAD18882.1| Protein TAF-8, isoform a [Caenorhabditis elegans]
Length = 495
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 101 IKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFPPVAPSTQP 160
IK +G S CE+A R DV L+ +GI ++ L + + + + AP P
Sbjct: 105 IKRIGEQSRFACEVAGRTIVTPGDVWFGLVNMGIKVNQLSDFHQDQIISALTVHAPEIIP 164
Query: 161 KPL--SILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
L+ G +PHP ++ +LP PDPH YI+T +
Sbjct: 165 PEAKNQALRIGTPRPHPSYVYEWLPPLPDPHTYIKTEI 202
>gi|219853269|ref|YP_002467701.1| tRNA pseudouridine synthase ACD [Methanosphaerula palustris E1-9c]
gi|254789642|sp|B8GFU5.1|TRUA_METPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|219547528|gb|ACL17978.1| tRNA pseudouridine synthase A [Methanosphaerula palustris E1-9c]
Length = 280
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTH 279
++ LN L D+ ++ VP + RFD + R Y+Y+F LDI AM +AA L+GTH
Sbjct: 76 VEALNGQLSPDLWCNGFAEVPPSFHPRFDAISRTYRYFFADWPLDIRAMDQAAAALIGTH 135
Query: 280 DFRNLCKMN 288
DF L ++
Sbjct: 136 DFSRLARVR 144
>gi|335419695|ref|ZP_08550744.1| tRNA pseudouridine synthase A [Salinisphaera shabanensis E1L3A]
gi|334896227|gb|EGM34381.1| tRNA pseudouridine synthase A [Salinisphaera shabanensis E1L3A]
Length = 259
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF-----PQA---- 261
E + +E +L N LP DI + PVP+ + ARF + R Y+YW P A
Sbjct: 66 EVERSERAWLLGTNRYLPEDIALQWVVPVPQAFHARFGAVAREYRYWILDRTAPSALWRN 125
Query: 262 -------GLDIDAMHKAAQYLVGTHDF 281
LD+DAM AAQ+LVG HDF
Sbjct: 126 RAYHSHHRLDVDAMQTAAQHLVGYHDF 152
>gi|290958122|ref|YP_003489304.1| tRNA-pseudouridine synthase [Streptomyces scabiei 87.22]
gi|260647648|emb|CBG70753.1| putative tRNA-pseudouridine synthase [Streptomyces scabiei 87.22]
Length = 287
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 19/89 (21%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------WFPQA 261
LK L LPRD++V A P ++ARF ++R Y Y W
Sbjct: 90 LKRLAGRLPRDVRVWALREAPSGFNARFSAIWRRYAYRVTDNPGGVDPLLRGHVLWHDWP 149
Query: 262 GLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD+DAM++AA+ L+G HDF CK G
Sbjct: 150 -LDVDAMNEAARLLLGEHDFAAYCKRREG 177
>gi|302536280|ref|ZP_07288622.1| tRNA pseudouridine synthase A [Streptomyces sp. C]
gi|302445175|gb|EFL16991.1| tRNA pseudouridine synthase A [Streptomyces sp. C]
Length = 287
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------WFPQAG 262
L+ L LP DI+V + PE ++ARF ++R Y Y + Q
Sbjct: 89 LRRLAGRLPHDIRVWKAAEAPEGFNARFSAIWRRYAYRVGDHRAGVDPLRRGHVLWHQWP 148
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD+DAM++AA LVG HDF CK G
Sbjct: 149 LDVDAMNEAAAALVGEHDFAAYCKKREG 176
>gi|21223110|ref|NP_628889.1| tRNA pseudouridine synthase A [Streptomyces coelicolor A3(2)]
gi|289769686|ref|ZP_06529064.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24]
gi|8134769|sp|O86776.1|TRUA_STRCO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|3449243|emb|CAA20387.1| putative pseudouridylate synthase [Streptomyces coelicolor A3(2)]
gi|289699885|gb|EFD67314.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24]
Length = 284
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 23/103 (22%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------- 256
P E ++ + LK L LPRD++V A P ++ARF ++R Y Y
Sbjct: 78 PREVWAEHHVKLLKRLAGRLPRDVRVWALREAPSGFNARFSAVWRRYAYRVTDNPGGVDP 137
Query: 257 -------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W +P LD+DAM+ AA+ L+G HDF CK G
Sbjct: 138 LLRGHVLWHDWP---LDVDAMNAAARGLLGEHDFAAYCKKREG 177
>gi|365157295|ref|ZP_09353569.1| tRNA pseudouridine synthase A [Bacillus smithii 7_3_47FAA]
gi|363625441|gb|EHL76480.1| tRNA pseudouridine synthase A [Bacillus smithii 7_3_47FAA]
Length = 247
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 27/153 (17%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF-----------------DCLFRNYKYWF 258
E ++++LN+ P DI + V + + ARF D L R Y Y F
Sbjct: 73 ETKWVQVLNSIFPEDIAAIQVEAVDDAFHARFSATGKEYRYRLYTTPHRDPLKRFYAYHF 132
Query: 259 PQAGLDIDAMHKAAQYLVGTHDFRNLC--KMNVGNGVVNFKRL-VTHAGVTSAWQNVQ-- 313
P + L+I+AM +AA+YL GTHDF + C K V + V +++ + G +Q V
Sbjct: 133 PYS-LNIEAMEEAARYLTGTHDFTSFCSAKTEVKDKVRTIRKIAIVQEGEEIVFQLVGNG 191
Query: 314 --FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVD 344
+N ++ +V + + G G PE I ++++
Sbjct: 192 FLYNMVRIIVGT--LLECGTGKRSPEEIPEILE 222
>gi|325675475|ref|ZP_08155159.1| tRNA pseudouridine synthase A [Rhodococcus equi ATCC 33707]
gi|325553446|gb|EGD23124.1| tRNA pseudouridine synthase A [Rhodococcus equi ATCC 33707]
Length = 296
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 17/93 (18%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA-----------------G 262
++ L LPRD++V A S PE + ARF + R+Y+Y A
Sbjct: 98 VRRLARFLPRDVRVKAVSFAPEHFDARFSAIRRHYEYRLTTAPYGAEPLRARDTVAWPKD 157
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 295
+D+DAM KA+ L+G HDF CK G V
Sbjct: 158 VDVDAMRKASSRLLGLHDFAAFCKRREGATTVR 190
>gi|229083731|ref|ZP_04216052.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-44]
gi|228699589|gb|EEL52253.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-44]
Length = 268
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 25/111 (22%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + V KI KL+ P K LN LP DI + VPE++ AR
Sbjct: 76 DAGVHALNQVANFKIEEKLSEP---------KVKKYLNQYLPNDISITDVEQVPERFHAR 126
Query: 247 FDCLFRNYKY--W--------------FPQAGLDIDAMHKAAQYLVGTHDF 281
++ + Y Y W Q L+I++M KAAQYL+G+HDF
Sbjct: 127 YNSKAKTYLYKIWNEEHTNPFMRKYSMHVQKKLNIESMQKAAQYLIGSHDF 177
>gi|358053246|ref|ZP_09147016.1| tRNA pseudouridine synthase A [Staphylococcus simiae CCM 7213]
gi|357257265|gb|EHJ07552.1| tRNA pseudouridine synthase A [Staphylococcus simiae CCM 7213]
Length = 267
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N+ LP DI V S V E++ R+DCL + Y+Y QA LD+D
Sbjct: 78 MNSALPNDIYVTKVSVVDEQFHCRYDCLGKRYRYKVYQAAHRNPFQSGLKTYIPDTLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AA+ +GTHDF C
Sbjct: 138 KMNEAAKQFIGTHDFTGFC 156
>gi|119718091|ref|YP_925056.1| tRNA pseudouridine synthase A [Nocardioides sp. JS614]
gi|119538752|gb|ABL83369.1| tRNA pseudouridine synthase A [Nocardioides sp. JS614]
Length = 268
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 19/89 (21%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------WFPQA 261
++ LN LP D++V P + ARF L+R Y Y +P+A
Sbjct: 78 VRRLNGRLPADVRVRRAVEAPAGFDARFGALWRRYAYRIADTPAVVDPLTRSHVLAWPRA 137
Query: 262 GLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD+DAM+ A+ +LVG HDF + CK G
Sbjct: 138 -LDLDAMNAASAFLVGRHDFASFCKQREG 165
>gi|429194985|ref|ZP_19187042.1| tRNA pseudouridine synthase A [Streptomyces ipomoeae 91-03]
gi|428669271|gb|EKX68237.1| tRNA pseudouridine synthase A [Streptomyces ipomoeae 91-03]
Length = 288
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 23/103 (22%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------- 256
P E D++ LK L L RD++V A P ++ARF ++R Y Y
Sbjct: 78 PREVWDEHHGKLLKRLAGRLARDVRVWALREAPSGFNARFSAVWRRYAYRVTDNPGGVDP 137
Query: 257 -------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W +P LD+DAM++AA+ L+G HDF CK G
Sbjct: 138 LLRNHVLWHDWP---LDVDAMNEAARGLLGEHDFAAYCKRREG 177
>gi|345309051|ref|XP_001518012.2| PREDICTED: transcription initiation factor TFIID subunit 8-like
[Ornithorhynchus anatinus]
Length = 295
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 87 NWY---KRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYA 143
N+Y +R + V+ ++ E G S + + + L +++ + L YA
Sbjct: 49 NYYLARRRTLQVVVSSLLTEAGFESAEKASV---------ETLTEMLQSCFNVETLPAYA 99
Query: 144 KRPMRTVF--PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
KR R V PPV + P L AG + HP HIP + P FPDPH YI+TP
Sbjct: 100 KRSQRMVITAPPV--TNHPVTPKALTAGQNKSHPSHIPSHFPEFPDPHTYIKTPT 152
>gi|302558965|ref|ZP_07311307.1| tRNA pseudouridine synthase A [Streptomyces griseoflavus Tu4000]
gi|302476583|gb|EFL39676.1| tRNA pseudouridine synthase A [Streptomyces griseoflavus Tu4000]
Length = 285
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 19/101 (18%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------- 256
P E ++ LK L LPRD++V A P ++ARF ++R Y Y
Sbjct: 79 PREVWAEHHTKLLKRLAGRLPRDVRVWALREAPAGFNARFSAVWRRYAYRVTDNPGGVDP 138
Query: 257 -------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W LD+DAM++AA+ L+G HDF CK G
Sbjct: 139 LLRGHVLWHDWP-LDVDAMNEAARGLLGEHDFAAYCKRREG 178
>gi|339445580|ref|YP_004711584.1| pseudouridylate synthase [Eggerthella sp. YY7918]
gi|338905332|dbj|BAK45183.1| pseudouridylate synthase [Eggerthella sp. YY7918]
Length = 279
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 40/86 (46%), Gaps = 17/86 (19%)
Query: 217 LPYLKMLNNNLPRD-IKVVAWSPVPEKYSARFDCLFRNYKY----------------WFP 259
LP L+ N L D I V P +SARFD R Y Y WF
Sbjct: 102 LPSLRRSLNALTHDAITVREVEPKRLGFSARFDAQAREYHYYLCVDSTNPIFMRDFSWFV 161
Query: 260 QAGLDIDAMHKAAQYLVGTHDFRNLC 285
GLD+ AM K AQYL+G HDF++ C
Sbjct: 162 PGGLDLTAMEKGAQYLLGEHDFKSFC 187
>gi|156097182|ref|XP_001614624.1| tRNA pseudouridine synthase [Plasmodium vivax Sal-1]
gi|148803498|gb|EDL44897.1| tRNA pseudouridine synthase, putative [Plasmodium vivax]
Length = 241
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 198 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW 257
L IR K+ P D + Y+K +N L + ++V+ VP + AR +C+ R Y Y+
Sbjct: 3 ALTIRLKIRHPHMALQDLQRVYVKEINKKL-KHMQVIDMRSVPNFFDARLNCIHRTYLYF 61
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDFRNLCK 286
F + + M + + +G HDF N CK
Sbjct: 62 FMDKNYNFERMKEGCKLFLGEHDFSNFCK 90
>gi|297618350|ref|YP_003703509.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM
12680]
gi|297146187|gb|ADI02944.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM
12680]
Length = 244
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDC-----------------LFRNYKYWFPQAGLDI 265
LN+ LP DI+V+ E + R+ +RN Y++PQ LD+
Sbjct: 79 LNSVLPSDIRVLKSEKAKEGFHPRYQARAKAYRYLIYRQEEGRTFYRNLAYYYPQP-LDL 137
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLV 300
AM KAA+Y+ GTHDF C G+GV N+ R V
Sbjct: 138 PAMAKAARYMEGTHDFMAFCAS--GSGVRNYVRTV 170
>gi|298674065|ref|YP_003725815.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303]
gi|298287053|gb|ADI73019.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303]
Length = 277
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 18/201 (8%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
++D+ L +++N+ LP I A++ VP++++ R R Y Y DI +
Sbjct: 70 DTDNPRLAVPRVINSQLPESIWAWAYAVVPDEFNPRHGAFSRRYLYIMSGEEYDISRIRT 129
Query: 271 AAQYLVGTHDFRNLCKMNVGNGVV-NFKRLVTHAGVTSAWQNVQFND-----IKEVVDSE 324
A++YL+GTHDF N C G V +R+ T ++Q + ++++V +
Sbjct: 130 ASKYLIGTHDFANFCTPVKGKSTVRTVQRINIRVKGTLTLIDIQADSFLWKMVRKIVTA- 188
Query: 325 PSFKKGQGNEKPEIIQQLVDIEKYPRIKSAQFPWSSTGATTPNELFRRVFLLSFLAW-VD 383
G G E ++Q+++ E Y + P S G + + V L + W VD
Sbjct: 189 -LMMVGYGTRDTEWLEQMLNPEYY---EEGIEPAPSYGL-----ILKDVDYLQPIEWEVD 239
Query: 384 QYRIRQTAHCNIFTNLCTFYV 404
Y I Q A + +L + V
Sbjct: 240 DYSI-QKARNQLHQHLIRYRV 259
>gi|383639942|ref|ZP_09952348.1| tRNA pseudouridine synthase A [Streptomyces chartreusis NRRL 12338]
Length = 284
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 19/89 (21%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------WFPQA 261
LK L LPRD++V A P ++ARF ++R Y Y W
Sbjct: 90 LKRLAGRLPRDVRVWALREAPSGFNARFSAIWRRYAYRVTDNPGGVDPLLRNHVLWHDWP 149
Query: 262 GLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD+DAM++AA+ L+G HDF CK G
Sbjct: 150 -LDVDAMNEAARRLLGEHDFAAYCKKREG 177
>gi|302553571|ref|ZP_07305913.1| tRNA pseudouridine synthase A [Streptomyces viridochromogenes DSM
40736]
gi|302471189|gb|EFL34282.1| tRNA pseudouridine synthase A [Streptomyces viridochromogenes DSM
40736]
Length = 284
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 19/101 (18%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------- 256
P E ++ LK L LPRD++V A P ++ARF ++R Y Y
Sbjct: 78 PREVWAEHHQKLLKRLAGRLPRDVRVWALREAPSGFNARFSAVWRRYAYRVTDNPGGVDP 137
Query: 257 -------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W LD+DAM++AA+ L+G HDF CK G
Sbjct: 138 LLRNHVLWHDWP-LDVDAMNEAARRLLGEHDFAAYCKKREG 177
>gi|406945195|gb|EKD76770.1| tRNA pseudouridine synthase A [uncultured bacterium]
Length = 262
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 18/88 (20%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-------------- 256
E++ E ++ N+NLP D+ V+ + ARF L R Y+Y
Sbjct: 68 EAERTERSWVFGANSNLPSDVSVLWAKKTTSDFHARFSALSRTYRYIICNQPVRPGIFNK 127
Query: 257 ---WFPQAGLDIDAMHKAAQYLVGTHDF 281
W+ + LD+D+MH+AAQYL+G HDF
Sbjct: 128 TVGWYYKP-LDVDSMHRAAQYLLGEHDF 154
>gi|72163015|ref|YP_290672.1| tRNA pseudouridine synthase A [Thermobifida fusca YX]
gi|71916747|gb|AAZ56649.1| tRNA pseudouridine synthase [Thermobifida fusca YX]
Length = 296
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA-----------------G 262
L+ L LP D++V A +P P + ARF LFR Y Y A
Sbjct: 103 LRRLAGVLPPDVRVTAVAPAPPGFDARFSALFRRYVYRVSDAPGGVDPLRRHEVLWHRRP 162
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN-FKRL 299
LD+D M++AA L+G HDF C+ G V +RL
Sbjct: 163 LDVDRMNEAAAALLGEHDFAAYCRKREGASTVRELQRL 200
>gi|365860335|ref|ZP_09400148.1| tRNA pseudouridine synthase A [Streptomyces sp. W007]
gi|364010187|gb|EHM31114.1| tRNA pseudouridine synthase A [Streptomyces sp. W007]
Length = 284
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------- 256
++E L+ L LP D+++ +P P ++ARF L+R Y Y
Sbjct: 83 EHEEKLLRRLAGRLPLDVRIWRAAPAPAGFNARFSALWRRYAYRVGDRPGGVDPLTRGHV 142
Query: 257 -WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W + LD+DAM++AA +VG HDF CK G
Sbjct: 143 LWHDRP-LDVDAMNEAAALMVGEHDFAAYCKKREG 176
>gi|126180241|ref|YP_001048206.1| tRNA pseudouridine synthase ACD [Methanoculleus marisnigri JR1]
gi|166228738|sp|A3CXX4.1|TRUA_METMJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|125863035|gb|ABN58224.1| tRNA pseudouridine synthase A [Methanoculleus marisnigri JR1]
Length = 270
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTH 279
++ LN LP DI W+ P+ + R+ + R Y+Y+F G D AMH+AAQ +G H
Sbjct: 76 IEALNRVLPADIWCTGWAEAPDGFHPRYSAVSRTYRYYFSAPG-DAAAMHEAAQEFLGRH 134
Query: 280 DFRNLCKMNVGN 291
DF + N
Sbjct: 135 DFSAFARAGDRN 146
>gi|397781563|ref|YP_006546036.1| tRNA pseudouridine synthase A [Methanoculleus bourgensis MS2]
gi|396940065|emb|CCJ37320.1| tRNA pseudouridine synthase A [Methanoculleus bourgensis MS2]
Length = 268
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTH 279
++ LN LP DI AW+ VP+++ R+ + R Y+Y+F ++ MH+AA VG H
Sbjct: 76 IRSLNRVLPEDIWCTAWAGVPDRFHPRYSAMSRTYRYFFFPVPGNVALMHEAAGEFVGRH 135
Query: 280 DFRNLCKMN 288
DF +
Sbjct: 136 DFSAFARAG 144
>gi|340348973|ref|ZP_08671997.1| tRNA pseudouridine synthase A [Prevotella nigrescens ATCC 33563]
gi|339612539|gb|EGQ17342.1| tRNA pseudouridine synthase A [Prevotella nigrescens ATCC 33563]
Length = 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 210 EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG------- 262
E D +L Y LN LPRD+ V A PV + ARF R Y Y+
Sbjct: 69 EAIDCKQLCY--KLNRLLPRDVAVTAVFPVGNELHARFSATSRTYHYYMHHGRNPFLKAY 126
Query: 263 -------LDIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
LD D M+KAA YLVG HDF+ CK N
Sbjct: 127 SCEMPYVLDYDRMNKAASYLVGEHDFKCFCKAGGDN 162
>gi|66808731|ref|XP_638088.1| hypothetical protein DDB_G0285493 [Dictyostelium discoideum AX4]
gi|60466532|gb|EAL64584.1| hypothetical protein DDB_G0285493 [Dictyostelium discoideum AX4]
Length = 374
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+ VI L I+++G +H++ EL+ R DV A ++ I IH L + + F
Sbjct: 34 LADVIQLDIQDIGIRAHEYSELSCRTDSNFFDVKQAFEDMAINIHELQQFLLQSDEIPFA 93
Query: 153 PVAPSTQPKPLSILQAGVKQPHPP------------HIPPYLPLFPDPHAYIRTPV 196
V P P PL Q V+QP P HIP +LP FP+ H + +TP+
Sbjct: 94 QVVP---PFPL---QGSVEQPSKPSPYKTEEQEFPLHIPSFLPSFPEKHTFSKTPL 143
>gi|124486487|ref|YP_001031103.1| tRNA pseudouridine synthase ACD [Methanocorpusculum labreanum Z]
gi|166228737|sp|A2SU30.1|TRUA_METLZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|124364028|gb|ABN07836.1| tRNA pseudouridine synthase A [Methanocorpusculum labreanum Z]
Length = 281
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTH 279
++ LN +LP DI + + V E++ R+ R+Y+Y+FP D+ M AA L+GTH
Sbjct: 76 IEALNFHLPDDIWCIGAAEVDEEFYPRYAARERSYRYYFPYPA-DVSRMQDAASRLIGTH 134
Query: 280 DFRNLCKMNVGNGVVNFKRLVTHAGV 305
+F KM G V R VT A V
Sbjct: 135 NFSGFAKMEAGRDPV---RTVTRAEV 157
>gi|325832022|ref|ZP_08165119.1| tRNA pseudouridine synthase A [Eggerthella sp. HGA1]
gi|325486343|gb|EGC88795.1| tRNA pseudouridine synthase A [Eggerthella sp. HGA1]
Length = 284
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 40/93 (43%), Gaps = 17/93 (18%)
Query: 217 LPYLKMLNNNLPRD-IKVVAWSPVPEKYSARFDCLFRNYKY----------------WFP 259
LP L+ N L D I V P +SARFD R Y Y WF
Sbjct: 107 LPSLRRSLNALTHDAITVREVEPKKLGFSARFDAQAREYHYHLCVDSTCPIFMKDFSWFV 166
Query: 260 QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNG 292
GLDI AM AQYL+G HDF++ C G
Sbjct: 167 PGGLDITAMEAGAQYLLGEHDFKSFCMAASAEG 199
>gi|317488484|ref|ZP_07947035.1| tRNA pseudouridine synthase A [Eggerthella sp. 1_3_56FAA]
gi|316912416|gb|EFV33974.1| tRNA pseudouridine synthase A [Eggerthella sp. 1_3_56FAA]
Length = 280
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 40/93 (43%), Gaps = 17/93 (18%)
Query: 217 LPYLKMLNNNLPRD-IKVVAWSPVPEKYSARFDCLFRNYKY----------------WFP 259
LP L+ N L D I V P +SARFD R Y Y WF
Sbjct: 103 LPSLRRSLNALTHDAITVREVEPKKLGFSARFDAQAREYHYHLCVDSTCPIFMKDFSWFV 162
Query: 260 QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNG 292
GLDI AM AQYL+G HDF++ C G
Sbjct: 163 PGGLDITAMEAGAQYLLGEHDFKSFCMAASAEG 195
>gi|291562779|emb|CBL41595.1| pseudouridylate synthase I [butyrate-producing bacterium SS3/4]
Length = 255
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 23/115 (20%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V I +++ GE + + LN LP DI+V++ VPE++ +R
Sbjct: 54 DAGVHARGQVANFHINAEICPDGEAARE-------YLNRYLPDDIRVLSAKIVPERFHSR 106
Query: 247 FDCLFRNYKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNLC 285
+ Y Y+ LD+ AM +AA++L+G HDF++ C
Sbjct: 107 LSATSKTYGYYVETGDKKNVFERKYVYGCGKKLDVKAMRQAAEFLIGEHDFKSFC 161
>gi|411002550|ref|ZP_11378879.1| tRNA pseudouridine synthase A [Streptomyces globisporus C-1027]
Length = 284
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------- 256
++E L+ L LP D+++ +P P ++ARF L+R Y Y
Sbjct: 83 EHEEKLLRRLAGRLPLDVRIWRAAPAPAGFNARFSALWRRYAYRVGDRPGGVDPLTRGHV 142
Query: 257 -WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W + LD+DAM++AA +VG HDF CK G
Sbjct: 143 LWHDRP-LDLDAMNEAAALMVGEHDFAAYCKKREG 176
>gi|329938203|ref|ZP_08287654.1| tRNA pseudouridine synthase A [Streptomyces griseoaurantiacus M045]
gi|329302692|gb|EGG46582.1| tRNA pseudouridine synthase A [Streptomyces griseoaurantiacus M045]
Length = 288
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 23/91 (25%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------W--FP 259
LK L LPRD++V A P + ARF ++R Y Y W +P
Sbjct: 90 LKRLAGRLPRDVRVWALREAPAGFDARFSAVWRRYAYRVTDNPGGVDPLLRGHVLWHDWP 149
Query: 260 QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD+DAM++AA+ L+G HDF CK G
Sbjct: 150 ---LDVDAMNEAARGLLGEHDFAAYCKKREG 177
>gi|428162436|gb|EKX31580.1| hypothetical protein GUITHDRAFT_122224 [Guillardia theta CCMP2712]
Length = 326
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLD--------TYAK 144
+T ++ I+EVG SH ELA R Q L DV AL ++G + L YAK
Sbjct: 33 LTEILIKYIEEVGYQSHSLAELAGRTQDNLLDVRSALQDVGTTLPELYLFMQRNELRYAK 92
Query: 145 RPMRTVFPPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRT 194
+R FP P P+P + PPH+P +LP FP H Y+ T
Sbjct: 93 AEVR--FPVSRP---PRPRERFGQEEAEELPPHVPSFLPPFPSKHTYLAT 137
>gi|257790805|ref|YP_003181411.1| tRNA pseudouridine synthase A [Eggerthella lenta DSM 2243]
gi|257474702|gb|ACV55022.1| tRNA pseudouridine synthase A [Eggerthella lenta DSM 2243]
Length = 255
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 40/93 (43%), Gaps = 17/93 (18%)
Query: 217 LPYLKMLNNNLPRD-IKVVAWSPVPEKYSARFDCLFRNYKY----------------WFP 259
LP L+ N L D I V P +SARFD R Y Y WF
Sbjct: 78 LPSLRRSLNALTHDAITVREVEPKKLGFSARFDAQAREYHYHLCVDSTCPIFMKDFSWFV 137
Query: 260 QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNG 292
GLDI AM AQYL+G HDF++ C G
Sbjct: 138 PGGLDITAMEAGAQYLLGEHDFKSFCMAASAEG 170
>gi|300857811|ref|YP_003782794.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
FRC41]
gi|375287978|ref|YP_005122519.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
3/99-5]
gi|384506086|ref|YP_005682755.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
C231]
gi|384508176|ref|YP_005684844.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
I19]
gi|386739747|ref|YP_006212927.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
31]
gi|387135943|ref|YP_005691923.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
42/02-A]
gi|387138003|ref|YP_005693982.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|392399951|ref|YP_006436551.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
Cp162]
gi|300685265|gb|ADK28187.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
FRC41]
gi|302205546|gb|ADL09888.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
C231]
gi|308275782|gb|ADO25681.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
I19]
gi|348606388|gb|AEP69661.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
42/02-A]
gi|349734481|gb|AEQ05959.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|371575267|gb|AEX38870.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
3/99-5]
gi|384476441|gb|AFH90237.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
31]
gi|390531029|gb|AFM06758.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
Cp162]
Length = 291
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 50/118 (42%), Gaps = 25/118 (21%)
Query: 190 AYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 249
A+ P + L RS D + ++ L LP D++V A + PE + ARF
Sbjct: 70 AHFDVPAIALDTRSI--------DGDPRNLVRRLARLLPEDVRVHACTLAPEGFDARFSA 121
Query: 250 LFRNYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNVG 290
L R+Y Y P+ L DIDAM AA L+G HDF CK G
Sbjct: 122 LRRHYVYRLTTHPRGALPTRATDTAHWPKRIDIDAMQAAADVLIGLHDFAAFCKHREG 179
>gi|386318612|ref|YP_006014775.1| tRNA pseudouridine synthase A [Staphylococcus pseudintermedius
ED99]
gi|323463783|gb|ADX75936.1| tRNA pseudouridine synthase A [Staphylococcus pseudintermedius
ED99]
Length = 267
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA----------------GLDID 266
+N+ LP DI V S + + R+DC+ + Y+Y QA LDI+
Sbjct: 79 MNSALPDDIYVHDVSFIDRDFHCRYDCVGKRYRYSIYQAEHRNPFWSQLKTFEPKALDIE 138
Query: 267 AMHKAAQYLVGTHDFRNLC 285
AM +AAQY VGTH+F C
Sbjct: 139 AMQRAAQYFVGTHNFTTFC 157
>gi|182436598|ref|YP_001824317.1| tRNA pseudouridine synthase A [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|238689026|sp|B1W3X8.1|TRUA_STRGG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|178465114|dbj|BAG19634.1| putative pseudouridine synthase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 284
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------- 256
++E L+ L LP D+++ +P P ++ARF L+R Y Y
Sbjct: 83 EHEEKLLRRLAGRLPLDVRIWRAAPAPAGFNARFSALWRRYAYRVGDRPGGVDPLTRGHV 142
Query: 257 -WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W + LD+DAM++AA +VG HDF CK G
Sbjct: 143 LWHDRP-LDLDAMNEAAALMVGEHDFAAYCKKREG 176
>gi|326777220|ref|ZP_08236485.1| tRNA pseudouridine synthase A [Streptomyces griseus XylebKG-1]
gi|326657553|gb|EGE42399.1| tRNA pseudouridine synthase A [Streptomyces griseus XylebKG-1]
Length = 284
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------- 256
++E L+ L LP D+++ +P P ++ARF L+R Y Y
Sbjct: 83 EHEEKLLRRLAGRLPLDVRIWRAAPAPAGFNARFSALWRRYAYRVGDRPGGVDPLTRGHV 142
Query: 257 -WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W + LD+DAM++AA +VG HDF CK G
Sbjct: 143 LWHDRP-LDLDAMNEAAALMVGEHDFAAYCKKREG 176
>gi|379714682|ref|YP_005303019.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
316]
gi|377653388|gb|AFB71737.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
316]
Length = 318
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 51/123 (41%), Gaps = 25/123 (20%)
Query: 190 AYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 249
A+ P + L RS D + ++ L LP D++V A + PE + ARF
Sbjct: 97 AHFDVPAIALDTRSI--------DGDPRNLVRRLARLLPEDVRVHACTLAPEGFDARFSA 148
Query: 250 LFRNYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNG 292
L R+Y Y P+ L DIDAM AA L+G HDF CK G
Sbjct: 149 LRRHYVYRLTTHPRGALPTRATDTAHWPKRIDIDAMQAAADVLIGLHDFAAFCKHREGAT 208
Query: 293 VVN 295
+
Sbjct: 209 TIR 211
>gi|307107300|gb|EFN55543.1| hypothetical protein CHLNCDRAFT_133992 [Chlorella variabilis]
Length = 593
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 196 VVTLKIRSKL-TSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNY 254
VV L +RS T + D EL Y +LN LP+DI+V+ W+ VP+ +SARF +R Y
Sbjct: 146 VVALLLRSAARTGEVQPEADVELDYPSLLNRVLPQDIRVLGWADVPDDFSARFSAQYREY 205
Query: 255 KY 256
KY
Sbjct: 206 KY 207
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV----TSAWQNVQFNDI- 317
LD+ M +AA + +G HDFRN CK++V V NF+R V V AW + +
Sbjct: 286 LDVGRMQEAAAFFLGEHDFRNFCKVDVAQ-VTNFRRRVLDCRVEELPACAWGGRRLLQLH 344
Query: 318 ---------KEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
+ + G+G E P I+ L+D ++ PR
Sbjct: 345 IRGTAFLWHQVRCMAAVLLMVGRGEEPPGIVATLLDPQQVPR 386
>gi|319893169|ref|YP_004150044.1| tRNA pseudouridine synthase A [Staphylococcus pseudintermedius
HKU10-03]
gi|317162865|gb|ADV06408.1| tRNA pseudouridine synthase A [Staphylococcus pseudintermedius
HKU10-03]
Length = 267
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA----------------GLDID 266
+N+ LP DI V S + + R+DC+ + Y+Y QA LDI+
Sbjct: 79 MNSALPDDIYVHDVSFIDRDFHCRYDCVGKRYRYSIYQAEHRNPFWSQLKTFEPKALDIE 138
Query: 267 AMHKAAQYLVGTHDFRNLC 285
AM +AAQY VGTH+F C
Sbjct: 139 AMQRAAQYFVGTHNFTTFC 157
>gi|383313577|ref|YP_005374432.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
P54B96]
gi|384503997|ref|YP_005680667.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
1002]
gi|384510271|ref|YP_005689849.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
PAT10]
gi|385806846|ref|YP_005843243.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
267]
gi|387140031|ref|YP_005696009.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
1/06-A]
gi|389849750|ref|YP_006351985.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
258]
gi|302330101|gb|ADL20295.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
1002]
gi|341824210|gb|AEK91731.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
PAT10]
gi|355391822|gb|AER68487.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
1/06-A]
gi|380869078|gb|AFF21552.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
P54B96]
gi|383804239|gb|AFH51318.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
267]
gi|388247056|gb|AFK16047.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
258]
Length = 319
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 51/123 (41%), Gaps = 25/123 (20%)
Query: 190 AYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 249
A+ P + L RS D + ++ L LP D++V A + PE + ARF
Sbjct: 98 AHFDVPAIALDTRSI--------DGDPRNLVRRLARLLPEDVRVHACTLAPEGFDARFSA 149
Query: 250 LFRNYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNG 292
L R+Y Y P+ L DIDAM AA L+G HDF CK G
Sbjct: 150 LRRHYVYRLTTHPRGALPTRATDTAHWPKRIDIDAMQAAADVLIGLHDFAAFCKHREGAT 209
Query: 293 VVN 295
+
Sbjct: 210 TIR 212
>gi|441205032|ref|ZP_20972393.1| pseudouridine synthase [Mycobacterium smegmatis MKD8]
gi|440629052|gb|ELQ90843.1| pseudouridine synthase [Mycobacterium smegmatis MKD8]
Length = 253
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 29/169 (17%)
Query: 212 SDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG--------- 262
+D P ++ L LP D++V P + ARF L R+Y Y A
Sbjct: 53 TDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETR 112
Query: 263 --------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV-NFKRL--VTHAGVTSAWQN 311
LD+DAM+ AAQ L+G +DF C+ G + + +RL V + +A+
Sbjct: 113 FVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVT 172
Query: 312 VQ---FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPRIKSAQFP 357
+N ++ +V + K G+G PE +L+ +S++FP
Sbjct: 173 ADAFCWNMVRSLVGA--LLKVGEGRRSPEWTAELLGATS----RSSEFP 215
>gi|312140887|ref|YP_004008223.1| tRNA pseudouridine synthase a [Rhodococcus equi 103S]
gi|311890226|emb|CBH49544.1| tRNA pseudouridine synthase A [Rhodococcus equi 103S]
Length = 274
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 17/93 (18%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA-----------------G 262
++ L LPRD++V A S PE + ARF + R+Y+Y A
Sbjct: 76 VRRLARFLPRDVRVKAVSFAPEHFDARFSAIRRHYEYRLTTAPYGAEPLRARDTVAWPKD 135
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 295
+D+DAM +A+ L+G HDF CK G V
Sbjct: 136 VDVDAMREASSRLLGLHDFAAFCKRREGATTVR 168
>gi|21227597|ref|NP_633519.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1]
gi|452210068|ref|YP_007490182.1| tRNA pseudouridine synthase A [Methanosarcina mazei Tuc01]
gi|34395892|sp|Q8PWT1.1|TRUA_METMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|20905982|gb|AAM31191.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1]
gi|452099970|gb|AGF96910.1| tRNA pseudouridine synthase A [Methanosarcina mazei Tuc01]
Length = 269
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
++D L +++N+ LP I V A + VP + AR + R+Y+Y G DI M +
Sbjct: 68 DTDRPNLAIPRIINSGLPPTIWVWAHAEVPYDFDARRHAVSRHYRYVISGEGYDISKMRE 127
Query: 271 AAQYLVGTHDFRNLCKMN 288
A++ L+GTHDF N + N
Sbjct: 128 ASKLLLGTHDFENFSRSN 145
>gi|406666891|ref|ZP_11074654.1| tRNA pseudouridine synthase A [Bacillus isronensis B3W22]
gi|405385174|gb|EKB44610.1| tRNA pseudouridine synthase A [Bacillus isronensis B3W22]
Length = 249
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 20/93 (21%)
Query: 216 ELP---YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-W-------------- 257
E+P + K LN LPRDI+V+ V E + AR+D + Y+Y W
Sbjct: 70 EIPPEKFQKALNVQLPRDIRVLHMEQVKEDFHARYDVSGKRYRYIWDCSTVQSPFRRHYT 129
Query: 258 FPQAGL--DIDAMHKAAQYLVGTHDFRNLCKMN 288
G+ +++AM +AAQ +VGTHDF C N
Sbjct: 130 VETGGVKPNVEAMREAAQAIVGTHDFSCFCAAN 162
>gi|118473191|ref|YP_885908.1| tRNA pseudouridine synthase A [Mycobacterium smegmatis str. MC2
155]
gi|118174478|gb|ABK75374.1| tRNA pseudouridine synthase A [Mycobacterium smegmatis str. MC2
155]
Length = 291
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 43/193 (22%)
Query: 188 PHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 247
PHAY R T P +D P ++ L LP D++V P + ARF
Sbjct: 81 PHAYPRH-----------TRP---TDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARF 126
Query: 248 DCLFRNYKYWFPQAG-----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
L R+Y Y A LD+DAM+ AAQ L+G +DF C+ G
Sbjct: 127 SALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAG 186
Query: 291 NGVV-NFKRL--VTHAGVTSAWQNVQ---FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVD 344
+ + +RL V + +A+ +N ++ +V + K G+G PE +L+
Sbjct: 187 ATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGA--LLKVGEGRRSPEWTAELLG 244
Query: 345 IEKYPRIKSAQFP 357
+S++FP
Sbjct: 245 ATS----RSSEFP 253
>gi|453075587|ref|ZP_21978373.1| tRNA pseudouridine synthase TruA [Rhodococcus triatomae BKS 15-14]
gi|452763013|gb|EME21300.1| tRNA pseudouridine synthase TruA [Rhodococcus triatomae BKS 15-14]
Length = 262
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + V I S+ E D+ ++ L LP D++V A PVP ++ AR
Sbjct: 26 DAGVHASGQVAHCDIGSRRDGDLSEHLDDPDRLVRRLARFLPPDVRVTAIGPVPAEFDAR 85
Query: 247 FDCLFRNYKYWFPQA-----------------GLDIDAMHKAAQYLVGTHDFRNLCKMNV 289
F + R+Y+Y A LD+DAM A+ L+G HDF C+
Sbjct: 86 FSAIRRHYEYRITTARYGAEPLRARDTVSVPKKLDLDAMRAASHALLGLHDFAAFCRRRE 145
Query: 290 GNGVVN 295
G V
Sbjct: 146 GATTVR 151
>gi|110803601|ref|YP_698382.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
gi|110684102|gb|ABG87472.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
Length = 248
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGL 263
+K +N LP DI+V E++ ARF+ + Y+Y W + L
Sbjct: 80 IKYINEYLPEDIRVKEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKL 139
Query: 264 DIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
D++AM + A+YL+GTHDF++ + N
Sbjct: 140 DLEAMEEGAKYLLGTHDFKSFTSLKSKN 167
>gi|386841908|ref|YP_006246966.1| tRNA pseudouridine synthase A [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374102209|gb|AEY91093.1| tRNA pseudouridine synthase A [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451795202|gb|AGF65251.1| tRNA pseudouridine synthase A [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 287
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 19/89 (21%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------WFPQA 261
LK L LP+D++V A P ++ARF ++R Y Y W
Sbjct: 90 LKRLAGRLPKDVRVWALREAPSGFNARFSAVWRRYAYRVTDNPGGVDPLLRGHVLWHDWP 149
Query: 262 GLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD+DAM++AA+ L+G HDF CK G
Sbjct: 150 -LDVDAMNEAARTLLGEHDFAAYCKKREG 177
>gi|239990059|ref|ZP_04710723.1| tRNA pseudouridine synthase A [Streptomyces roseosporus NRRL 11379]
gi|291447073|ref|ZP_06586463.1| tRNA pseudouridine synthase A [Streptomyces roseosporus NRRL 15998]
gi|291350020|gb|EFE76924.1| tRNA pseudouridine synthase A [Streptomyces roseosporus NRRL 15998]
Length = 284
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------- 256
++E L+ L LP D++V +P P ++ARF L+R Y Y
Sbjct: 83 EHEEKLLRRLAGRLPLDVRVWRAAPAPAGFNARFSALWRRYAYRVGDRPGGVDPLTRGHV 142
Query: 257 -WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W + LD+D+M++AA +VG HDF CK G
Sbjct: 143 LWHDRP-LDLDSMNEAAALMVGEHDFAAYCKKREG 176
>gi|399985910|ref|YP_006566258.1| Pseudouridylate synthase [Mycobacterium smegmatis str. MC2 155]
gi|399230470|gb|AFP37963.1| Pseudouridylate synthase [Mycobacterium smegmatis str. MC2 155]
Length = 302
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 43/193 (22%)
Query: 188 PHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 247
PHAY R T P +D P ++ L LP D++V P + ARF
Sbjct: 92 PHAYPRH-----------TRP---TDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARF 137
Query: 248 DCLFRNYKYWFPQAG-----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
L R+Y Y A LD+DAM+ AAQ L+G +DF C+ G
Sbjct: 138 SALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAG 197
Query: 291 NGVV-NFKRL--VTHAGVTSAWQNVQ---FNDIKEVVDSEPSFKKGQGNEKPEIIQQLVD 344
+ + +RL V + +A+ +N ++ +V + K G+G PE +L+
Sbjct: 198 ATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGA--LLKVGEGRRSPEWTAELLG 255
Query: 345 IEKYPRIKSAQFP 357
+S++FP
Sbjct: 256 ATS----RSSEFP 264
>gi|455651233|gb|EMF29979.1| tRNA pseudouridine synthase A [Streptomyces gancidicus BKS 13-15]
Length = 249
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 19/101 (18%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------- 256
P E ++ LK L LP+D++V A P + ARF ++R Y Y
Sbjct: 43 PREVWAEHRAKLLKRLAGRLPKDVRVWALREAPAGFDARFSAIWRRYAYRVTDNPGGVDP 102
Query: 257 -------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W LD+DAM++AA+ L+G HDF CK G
Sbjct: 103 LLRNHVLWHDWP-LDVDAMNEAARGLLGEHDFAAYCKKREG 142
>gi|348672737|gb|EGZ12557.1| hypothetical protein PHYSODRAFT_415093 [Phytophthora sojae]
Length = 329
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 82 DCYQRNWYKRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLAL-------IELGI 134
D Q++ A+T ++ I+ +GG + D ELA R QP DV+ AL +E+
Sbjct: 77 DAVQKSAAD-ALTEILAKYIQRIGGAAKDIAELAGRTQPKATDVVQALQDLEPAPVEIKD 135
Query: 135 PIHGLDTYAKRPM-RTV--FPPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAY 191
+ L+T AKRP R V FP + + G ++ PPH+P +LP P+ H Y
Sbjct: 136 LVKTLET-AKRPFPRDVPAFPARKRDISGNTIEQAKIGRREGLPPHVPSFLPPLPNRHTY 194
>gi|254492043|ref|ZP_05105220.1| tRNA pseudouridine synthase A [Methylophaga thiooxidans DMS010]
gi|224462740|gb|EEF79012.1| tRNA pseudouridine synthase A [Methylophaga thiooxydans DMS010]
Length = 259
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 16/83 (19%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WF 258
+E +L +N NLP+DI V PV ++++ARF + R Y+Y W+
Sbjct: 70 SERGWLLGINANLPKDINVAWMKPVDDEFNARFTAIKRRYRYLILNRLSRSAVHHNRMWW 129
Query: 259 PQAGLDIDAMHKAAQYLVGTHDF 281
LDI+ M AA LVG HDF
Sbjct: 130 HHHPLDIERMQAAADQLVGKHDF 152
>gi|445114845|ref|ZP_21378052.1| tRNA pseudouridine(38-40) synthase [Prevotella nigrescens F0103]
gi|444840563|gb|ELX67592.1| tRNA pseudouridine(38-40) synthase [Prevotella nigrescens F0103]
Length = 260
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 210 EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG------- 262
E D +L Y LN LPRD+ V A PV + ARF R Y Y+
Sbjct: 69 EAIDCKQLCY--KLNRLLPRDVAVTAVFPVGNELHARFSATSRTYHYYMHHGRNPFLKAY 126
Query: 263 -------LDIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
LD D M++AA YLVG HDF+ CK N
Sbjct: 127 SCEMPYVLDYDRMNEAASYLVGEHDFKCFCKAGGDN 162
>gi|168211805|ref|ZP_02637430.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
gi|170710235|gb|EDT22417.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
Length = 248
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGL 263
++ +N LP DI+V E++ ARF+ + Y+Y W + L
Sbjct: 80 IEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKL 139
Query: 264 DIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
D++AM + A+YL+GTHDF++ + N
Sbjct: 140 DLEAMEEGAKYLLGTHDFKSFTSLKSKN 167
>gi|323490654|ref|ZP_08095859.1| tRNA pseudouridine synthase A [Planococcus donghaensis MPA1U2]
gi|323395746|gb|EGA88587.1| tRNA pseudouridine synthase A [Planococcus donghaensis MPA1U2]
Length = 247
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 18/101 (17%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG-------------- 262
+ +LK LN LP DI+V + V + AR+ + Y+Y + ++
Sbjct: 74 IGWLKALNVLLPEDIRVHSIEEVDTSFHARYHTTGKTYRYKWDRSQIISPFTRSLMVHVK 133
Query: 263 --LDIDAMHKAAQYLVGTHDFRNLCKMN--VGNGVVNFKRL 299
LD++AM KA+Q +VGTHDF + C N V + V +RL
Sbjct: 134 QPLDVEAMKKASQAIVGTHDFSSFCAANTAVVDKVRTVRRL 174
>gi|168208061|ref|ZP_02634066.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|168215906|ref|ZP_02641531.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
gi|169341141|ref|ZP_02863234.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
gi|422345695|ref|ZP_16426609.1| tRNA pseudouridine synthase A 1 [Clostridium perfringens WAL-14572]
gi|422873893|ref|ZP_16920378.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
gi|169299748|gb|EDS81800.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
gi|170660642|gb|EDT13325.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|182381869|gb|EDT79348.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
gi|373227360|gb|EHP49674.1| tRNA pseudouridine synthase A 1 [Clostridium perfringens WAL-14572]
gi|380305126|gb|EIA17407.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
Length = 248
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGL 263
++ +N LP DI+V E++ ARF+ + Y+Y W + L
Sbjct: 80 IEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKL 139
Query: 264 DIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
D++AM + A+YL+GTHDF++ + N
Sbjct: 140 DLEAMEEGAKYLLGTHDFKSFTSLKSKN 167
>gi|433636546|ref|YP_007270173.1| tRNA pseudouridine synthase A [Mycobacterium canettii CIPT
140070017]
gi|432168139|emb|CCK65671.1| tRNA pseudouridine synthase A [Mycobacterium canettii CIPT
140070017]
Length = 297
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 209 GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--------PQ 260
G D LP L+ L LP D++++ + P + ARF L R+Y Y PQ
Sbjct: 99 GHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQ 158
Query: 261 AG---------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV-NFKRL 299
LD+DAM A++ L+G HDF C+ G + + +RL
Sbjct: 159 QARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGTTTIRDLQRL 207
>gi|119872780|ref|YP_930787.1| tRNA pseudouridine synthase ACD [Pyrobaculum islandicum DSM 4184]
gi|166228754|sp|A1RU12.1|TRUA_PYRIL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|119674188|gb|ABL88444.1| Pseudouridylate synthase [Pyrobaculum islandicum DSM 4184]
Length = 255
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 202 RSKLTSPGEESDDN------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 255
R T PG + N +LP + ++N+ LPR + A + VP+ ++ R FR+Y
Sbjct: 38 RGSRTDPGVSAVANTVMVSQKLP-IALVNSKLPRGVWAWAIAEVPQSFNPR-RAKFRHYL 95
Query: 256 YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCK 286
Y P G D+ +MH+AA+ L GTHDF + +
Sbjct: 96 YVAPHWGEDLGSMHEAAEVLAGTHDFASFIQ 126
>gi|18309973|ref|NP_561907.1| tRNA pseudouridine synthase A [Clostridium perfringens str. 13]
gi|24212547|sp|Q8XLQ0.1|TRUA1_CLOPE RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|18144651|dbj|BAB80697.1| tRNA-pseudouridine synthase I [Clostridium perfringens str. 13]
Length = 248
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGL 263
++ +N LP DI+V E++ ARF+ + Y+Y W + L
Sbjct: 80 IEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKL 139
Query: 264 DIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
D++AM + A+YL+GTHDF++ + N
Sbjct: 140 DLEAMEEGAKYLLGTHDFKSFTSLKSKN 167
>gi|168213913|ref|ZP_02639538.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str.
F4969]
gi|170714597|gb|EDT26779.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str.
F4969]
Length = 248
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGL 263
++ +N LP DI+V E++ ARF+ + Y+Y W + L
Sbjct: 80 IEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKL 139
Query: 264 DIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
D++AM + A+YL+GTHDF++ + N
Sbjct: 140 DLEAMEEGAKYLLGTHDFKSFTSLKSKN 167
>gi|225377724|ref|ZP_03754945.1| hypothetical protein ROSEINA2194_03375 [Roseburia inulinivorans DSM
16841]
gi|225210401|gb|EEG92755.1| hypothetical protein ROSEINA2194_03375 [Roseburia inulinivorans DSM
16841]
Length = 245
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 18/83 (21%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARF-----------------DCLFRNYKYWFPQAG 262
L LN+ LP DI V+A V E++ +R+ D R Y+Y + +
Sbjct: 77 LSYLNHYLPDDIAVIAVEQVDERFHSRYAAKKKTYRYHIHMGEISDVFERKYEYQYEKT- 135
Query: 263 LDIDAMHKAAQYLVGTHDFRNLC 285
LD++ M +AA YL+GTHDF + C
Sbjct: 136 LDVERMKEAASYLIGTHDFTSFC 158
>gi|443625111|ref|ZP_21109562.1| putative Pseudouridine synthase [Streptomyces viridochromogenes
Tue57]
gi|443341374|gb|ELS55565.1| putative Pseudouridine synthase [Streptomyces viridochromogenes
Tue57]
Length = 288
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 19/89 (21%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------WFPQA 261
LK L LP+D++V A P ++ARF ++R Y Y W
Sbjct: 91 LKRLAGRLPKDVRVWALREAPSGFNARFSAVWRRYAYRVTDNPGGVDPLLRNHVLWHDWP 150
Query: 262 GLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD+DAM++AA+ L+G HDF CK G
Sbjct: 151 -LDVDAMNEAARGLLGEHDFAAYCKKREG 178
>gi|312135434|ref|YP_004002772.1| tRNA pseudouridine synthase a [Caldicellulosiruptor owensensis OL]
gi|311775485|gb|ADQ04972.1| tRNA pseudouridine synthase A [Caldicellulosiruptor owensensis OL]
Length = 244
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 18/80 (22%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDC-----------------LFRNYKYWFPQAGLDI 265
LN+ LP DI V VP +SAR+ L RNY Y++P LD+
Sbjct: 79 LNSVLPGDISVKDAVEVPLDFSARYSAKQKTYKYLIYNKKSRPALLRNYAYYYPYE-LDV 137
Query: 266 DAMHKAAQYLVGTHDFRNLC 285
DAM +A +Y +G +DF++ C
Sbjct: 138 DAMQRACEYFIGEYDFKSFC 157
>gi|344996365|ref|YP_004798708.1| tRNA pseudouridine synthase A [Caldicellulosiruptor lactoaceticus
6A]
gi|343964584|gb|AEM73731.1| tRNA pseudouridine synthase A [Caldicellulosiruptor lactoaceticus
6A]
Length = 244
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 18/80 (22%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDC-----------------LFRNYKYWFPQAGLDI 265
LN+ LP DI V VP +SAR+ L RNY Y++P LD+
Sbjct: 79 LNSVLPGDISVKDAVEVPLDFSARYSAKQKTYKYLIYNKKSRPALLRNYAYYYPYE-LDV 137
Query: 266 DAMHKAAQYLVGTHDFRNLC 285
DAM +A +Y +G +DF++ C
Sbjct: 138 DAMQRACEYFIGEYDFKSFC 157
>gi|291437810|ref|ZP_06577200.1| pseudouridylate synthase [Streptomyces ghanaensis ATCC 14672]
gi|291340705|gb|EFE67661.1| pseudouridylate synthase [Streptomyces ghanaensis ATCC 14672]
Length = 284
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 19/89 (21%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------WFPQA 261
LK L LP+D++V A P + ARF ++R Y Y W
Sbjct: 90 LKRLAGRLPKDVRVWALREAPAGFDARFSAVWRRYAYRVTDNPGGVDPLLRGHVLWHDWP 149
Query: 262 GLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD+DAM++AA+ L+G HDF CK G
Sbjct: 150 -LDVDAMNEAARGLLGEHDFAAYCKRREG 177
>gi|167770549|ref|ZP_02442602.1| hypothetical protein ANACOL_01895 [Anaerotruncus colihominis DSM
17241]
gi|167667144|gb|EDS11274.1| tRNA pseudouridine synthase A [Anaerotruncus colihominis DSM 17241]
Length = 246
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGL 263
++ +N +LP DI V VPE + R+DC + Y Y F + L
Sbjct: 76 VRAMNVHLPSDIAVTGCREVPEAFHPRYDCKGKRYLYRIYNGTVRDPFSADLALFWKYPL 135
Query: 264 DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT 306
D M AAQ VGTHDF C + G+GV + R VT A VT
Sbjct: 136 DERRMDAAAQGFVGTHDFAAFC--SSGSGVQDTVRTVTDASVT 176
>gi|408529900|emb|CCK28074.1| tRNA pseudouridine synthase A [Streptomyces davawensis JCM 4913]
Length = 281
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 19/94 (20%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------WFPQA 261
LK L LP+D++V A + PE ++ARF L+R Y Y W
Sbjct: 91 LKRLAGRLPKDVRVWALTEAPEGFNARFAALWRRYIYRVGDRPGGVDPLLRSHVLWHDWE 150
Query: 262 GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 295
LD+D M AA+ LVG HDF K G V
Sbjct: 151 -LDVDVMDAAAKSLVGEHDFAAYAKKREGASTVR 183
>gi|389816155|ref|ZP_10207342.1| tRNA pseudouridine synthase A [Planococcus antarcticus DSM 14505]
gi|388465419|gb|EIM07737.1| tRNA pseudouridine synthase A [Planococcus antarcticus DSM 14505]
Length = 247
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 16/86 (18%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG---------------- 262
+LK LN LP DI+V + V + AR+ + Y+Y + +G
Sbjct: 76 WLKALNVLLPEDIRVSSIEEVDVSFHARYHTTGKTYRYKWDCSGIISPFTRNHMVHVKQP 135
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMN 288
LDI+AM AA+ L+GTHDF + C N
Sbjct: 136 LDIEAMRTAARALIGTHDFSSFCAAN 161
>gi|289449159|ref|ZP_06438903.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
CPHL_A]
gi|289422117|gb|EFD19318.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
CPHL_A]
Length = 256
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 209 GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--------PQ 260
G D LP L+ L LP D++++ + P + ARF L R+Y Y PQ
Sbjct: 58 GHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQ 117
Query: 261 AG---------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV-NFKRL 299
LD+DAM A++ L+G HDF C+ G + + +RL
Sbjct: 118 QARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRL 166
>gi|121639375|ref|YP_979599.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148663320|ref|YP_001284843.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Ra]
gi|224991871|ref|YP_002646560.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Tokyo
172]
gi|254552559|ref|ZP_05143006.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289445055|ref|ZP_06434799.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T46]
gi|289571689|ref|ZP_06451916.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T17]
gi|289576191|ref|ZP_06456418.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis K85]
gi|289752179|ref|ZP_06511557.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T92]
gi|289755588|ref|ZP_06514966.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
EAS054]
gi|289759618|ref|ZP_06518996.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T85]
gi|289763637|ref|ZP_06523015.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis GM
1503]
gi|297636114|ref|ZP_06953894.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN 4207]
gi|297733114|ref|ZP_06962232.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN R506]
gi|306777802|ref|ZP_07416139.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu001]
gi|306782521|ref|ZP_07420858.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu002]
gi|306809459|ref|ZP_07446127.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu007]
gi|313660445|ref|ZP_07817325.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN
V2475]
gi|339633460|ref|YP_004725102.1| tRNA pseudouridine synthase A [Mycobacterium africanum GM041182]
gi|340628426|ref|YP_004746878.1| putative tRNA pseudouridine synthase A TRUA [Mycobacterium canettii
CIPT 140010059]
gi|378773236|ref|YP_005172969.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Mexico]
gi|385992688|ref|YP_005910986.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CCDC5180]
gi|385996324|ref|YP_005914622.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CCDC5079]
gi|424806025|ref|ZP_18231456.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
W-148]
gi|424949083|ref|ZP_18364779.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis NCGM2209]
gi|448824813|ref|NP_217972.3| Probable tRNA pseudouridine synthase a TruA (pseudouridylate
synthase I) (pseudouridine synthase I) (uracil
hydrolyase) [Mycobacterium tuberculosis H37Rv]
gi|449065566|ref|YP_007432649.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Korea
1168P]
gi|31620228|emb|CAD95671.1| PROBABLE TRNA PSEUDOURIDINE SYNTHASE A TRUA (PSEUDOURIDYLATE
SYNTHASE I) (PSEUDOURIDINE SYNTHASE I) (URACIL
HYDROLYASE) [Mycobacterium bovis AF2122/97]
gi|121495023|emb|CAL73509.1| Probable tRNA pseudouridine synthase A truA [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|148507472|gb|ABQ75281.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Ra]
gi|224774986|dbj|BAH27792.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Tokyo
172]
gi|289417974|gb|EFD15214.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T46]
gi|289540622|gb|EFD45200.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis K85]
gi|289545443|gb|EFD49091.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T17]
gi|289692766|gb|EFD60195.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T92]
gi|289696175|gb|EFD63604.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
EAS054]
gi|289711143|gb|EFD75159.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis GM
1503]
gi|289715182|gb|EFD79194.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T85]
gi|308213887|gb|EFO73286.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu001]
gi|308324838|gb|EFP13689.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu002]
gi|308344299|gb|EFP33150.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu007]
gi|326905301|gb|EGE52234.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
W-148]
gi|339296278|gb|AEJ48389.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
CCDC5079]
gi|339299881|gb|AEJ51991.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
CCDC5180]
gi|339332816|emb|CCC28539.1| putative tRNA pseudouridine synthase A TRUA (pseudouridylate
synthase I) [Mycobacterium africanum GM041182]
gi|340006616|emb|CCC45803.1| putative tRNA pseudouridine synthase A TRUA (pseudouridylate
synthase I) (pseudouridine synthase I) (uracil
hydrolyase) [Mycobacterium canettii CIPT 140010059]
gi|341603396|emb|CCC66077.1| probable tRNA pseudouridine synthase A truA [Mycobacterium bovis
BCG str. Moreau RDJ]
gi|356595557|gb|AET20786.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Mexico]
gi|358233598|dbj|GAA47090.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis NCGM2209]
gi|379029823|dbj|BAL67556.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis str.
Erdman = ATCC 35801]
gi|440582948|emb|CCG13351.1| putative TRNA PSEUDOURIDINE SYNTHASE A TRUA (PSEUDOURIDYLATE
SYNTHASE I) (PSEUDOURIDINE SYNTHASE I) (URACIL
HYDROLYASE) [Mycobacterium tuberculosis 7199-99]
gi|444897011|emb|CCP46277.1| Probable tRNA pseudouridine synthase a TruA (pseudouridylate
synthase I) (pseudouridine synthase I) (uracil
hydrolyase) [Mycobacterium tuberculosis H37Rv]
gi|449034074|gb|AGE69501.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Korea
1168P]
Length = 256
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 209 GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--------PQ 260
G D LP L+ L LP D++++ + P + ARF L R+Y Y PQ
Sbjct: 58 GHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQ 117
Query: 261 AG---------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV-NFKRL 299
LD+DAM A++ L+G HDF C+ G + + +RL
Sbjct: 118 QARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRL 166
>gi|307726601|ref|YP_003909814.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1003]
gi|307587126|gb|ADN60523.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1003]
Length = 270
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-------------- 256
E + ++ +++ N+ LP+ I V P+PE + ARF R Y Y
Sbjct: 67 ELERADVSWVRGTNSFLPKTISVQWAKPMPEAFHARFSAFERTYYYVLYVHPVRSPMLAG 126
Query: 257 ---WFPQAGLDIDAMHKAAQYLVGTHDF 281
W A LDIDAMH AA +L+G HDF
Sbjct: 127 RAGWV-HAALDIDAMHAAAAHLIGEHDF 153
>gi|306835272|ref|ZP_07468304.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49726]
gi|304568865|gb|EFM44398.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49726]
Length = 293
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 48/116 (41%), Gaps = 29/116 (25%)
Query: 190 AYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 249
A++ P L+ RS PG ++ L LP D++V PE + ARF
Sbjct: 78 AHVDVPQEMLEQRSVAGDPGT--------IVRRLAKLLPEDVRVHGCEFAPEGFDARFSA 129
Query: 250 LFRNYKY-------------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCK 286
L R+Y Y WF +DIDAM AA LVG HDF CK
Sbjct: 130 LRRHYVYRITTSPRGALPTRARDTAEWFKP--VDIDAMQDAATALVGLHDFAAFCK 183
>gi|182625331|ref|ZP_02953105.1| tRNA pseudouridine synthase A [Clostridium perfringens D str.
JGS1721]
gi|177909489|gb|EDT71936.1| tRNA pseudouridine synthase A [Clostridium perfringens D str.
JGS1721]
Length = 248
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGL 263
++ +N LP DI++ E++ ARF+ + Y+Y W + L
Sbjct: 80 IEYINEYLPEDIRITEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKL 139
Query: 264 DIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
D++AM + A+YL+GTHDF++ + N
Sbjct: 140 DLEAMEEGAKYLLGTHDFKSFTSLKSKN 167
>gi|258646072|ref|ZP_05733541.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470]
gi|260403447|gb|EEW96994.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470]
Length = 246
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDID 266
LN +LP DI + E++ +RF L + Y+Y W LDI+
Sbjct: 79 LNGDLPDDIALKHMETAEERFHSRFSTLEKTYRYRIRTSTEKNVFERRFVWQYGKSLDIE 138
Query: 267 AMHKAAQYLVGTHDFRNLC 285
AM KAA +L+GT+DF + C
Sbjct: 139 AMKKAAAFLIGTYDFTSFC 157
>gi|312127288|ref|YP_003992162.1| tRNA pseudouridine synthase a [Caldicellulosiruptor hydrothermalis
108]
gi|311777307|gb|ADQ06793.1| tRNA pseudouridine synthase A [Caldicellulosiruptor hydrothermalis
108]
Length = 244
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 18/80 (22%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDC-----------------LFRNYKYWFPQAGLDI 265
LN+ LP DI + VP +SAR+ L RNY Y++P LD+
Sbjct: 79 LNSVLPGDISIKDAVEVPLNFSARYSAKQKTYKYLIYNKNSRPALLRNYAYYYPYQ-LDV 137
Query: 266 DAMHKAAQYLVGTHDFRNLC 285
DAM +A +Y +G +DF++ C
Sbjct: 138 DAMQRACEYFIGEYDFKSFC 157
>gi|254383143|ref|ZP_04998497.1| tRNA pseudouridine synthase A [Streptomyces sp. Mg1]
gi|194342042|gb|EDX23008.1| tRNA pseudouridine synthase A [Streptomyces sp. Mg1]
Length = 283
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------WFPQAG 262
L+ L LP D++V + P+ ++ARF ++R Y Y + Q
Sbjct: 89 LRRLAGRLPHDVRVWKVAEAPQGFNARFSAIWRRYAYRVGDHQGGVDPLRRGHVLWHQWP 148
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD+DAM++AA L+G HDF CK G
Sbjct: 149 LDVDAMNRAAAALLGEHDFAAYCKKREG 176
>gi|15843050|ref|NP_338087.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CDC1551]
gi|148824665|ref|YP_001289419.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis F11]
gi|161511525|ref|NP_857124.2| tRNA pseudouridine synthase A [Mycobacterium bovis AF2122/97]
gi|253800500|ref|YP_003033501.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN 1435]
gi|254234047|ref|ZP_04927372.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis C]
gi|254366056|ref|ZP_04982101.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis str.
Haarlem]
gi|289747288|ref|ZP_06506666.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
02_1987]
gi|298526939|ref|ZP_07014348.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis
94_M4241A]
gi|308377357|ref|ZP_07441941.2| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu008]
gi|308378330|ref|ZP_07482228.2| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu009]
gi|308379519|ref|ZP_07668975.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu010]
gi|375297726|ref|YP_005101993.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN 4207]
gi|383309182|ref|YP_005361993.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis RGTB327]
gi|386000244|ref|YP_005918543.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CTRI-2]
gi|392388058|ref|YP_005309687.1| truA [Mycobacterium tuberculosis UT205]
gi|392433938|ref|YP_006474982.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN 605]
gi|397675409|ref|YP_006516944.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Rv]
gi|54039781|sp|P65847.1|TRUA_MYCBO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|54042086|sp|P65846.1|TRUA_MYCTU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|13883394|gb|AAK47901.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CDC1551]
gi|124599576|gb|EAY58680.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis C]
gi|134151569|gb|EBA43614.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis str.
Haarlem]
gi|148723192|gb|ABR07817.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis F11]
gi|253322003|gb|ACT26606.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN
1435]
gi|289687816|gb|EFD55304.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
02_1987]
gi|298496733|gb|EFI32027.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis
94_M4241A]
gi|308348190|gb|EFP37041.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu008]
gi|308352914|gb|EFP41765.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu009]
gi|308356757|gb|EFP45608.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu010]
gi|328460231|gb|AEB05654.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN
4207]
gi|344221291|gb|AEN01922.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CTRI-2]
gi|378546609|emb|CCE38888.1| truA [Mycobacterium tuberculosis UT205]
gi|380723135|gb|AFE18244.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis RGTB327]
gi|392055347|gb|AFM50905.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN
605]
gi|395140314|gb|AFN51473.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Rv]
Length = 297
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 209 GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--------PQ 260
G D LP L+ L LP D++++ + P + ARF L R+Y Y PQ
Sbjct: 99 GHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQ 158
Query: 261 AG---------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV-NFKRL 299
LD+DAM A++ L+G HDF C+ G + + +RL
Sbjct: 159 QARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRL 207
>gi|227505250|ref|ZP_03935299.1| tRNA pseudouridine synthase A [Corynebacterium striatum ATCC 6940]
gi|227198149|gb|EEI78197.1| tRNA pseudouridine synthase A [Corynebacterium striatum ATCC 6940]
Length = 285
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 213 DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF---PQAGL------ 263
D + ++ L LP D++V A + PE + ARF L R+Y Y P+ L
Sbjct: 80 DGDPAKLVRRLAKLLPEDVRVHACTAAPEGFDARFSALQRHYVYRITTHPRGALPTRARD 139
Query: 264 --------DIDAMHKAAQYLVGTHDFRNLCK 286
DIDAM +AA LVG HDF CK
Sbjct: 140 TAQWPKPVDIDAMQEAATTLVGLHDFAAFCK 170
>gi|433643650|ref|YP_007289409.1| tRNA pseudouridine synthase A [Mycobacterium canettii CIPT
140070008]
gi|432160198|emb|CCK57521.1| tRNA pseudouridine synthase A [Mycobacterium canettii CIPT
140070008]
Length = 297
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 209 GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--------PQ 260
G D LP L+ L LP D++++ + P + ARF L R+Y Y PQ
Sbjct: 99 GHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQ 158
Query: 261 AG---------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV-NFKRL 299
LD+DAM A++ L+G HDF C+ G + + +RL
Sbjct: 159 QARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRL 207
>gi|372268713|ref|ZP_09504761.1| tRNA pseudouridine synthase A [Alteromonas sp. S89]
Length = 294
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 39/156 (25%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA----------------G 262
+++ +N +P D++V PVP ++ ARF R+Y+Y A
Sbjct: 99 WVQGVNTQMPFDVRVHWAQPVPAQFHARFSARSRSYRYLIHSAPTRSAQAASEVTWTERT 158
Query: 263 LDIDAMHKAAQYLVGTHDF--------------RNLCKMNVGNGVVNFKRLVTHAGVTSA 308
LD++AM + A++LVG HDF R L ++++G +L+ +A
Sbjct: 159 LDLEAMREGARHLVGEHDFSSFRAAQCQARSPVRRLTRLDIG----RVGQLIVLEVSATA 214
Query: 309 WQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVD 344
+ + +I V+ G+G+ PE ++Q+++
Sbjct: 215 FLHHMVRNIAGVL-----MAVGRGDRSPEWVRQVLE 245
>gi|308371354|ref|ZP_07424662.2| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu003]
gi|308372553|ref|ZP_07667408.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu004]
gi|308373747|ref|ZP_07667643.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu005]
gi|308374881|ref|ZP_07667891.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu006]
gi|308380705|ref|ZP_07669261.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu011]
gi|308406162|ref|ZP_07669527.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu012]
gi|422814687|ref|ZP_16862910.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
CDC1551A]
gi|308329092|gb|EFP17943.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu003]
gi|308332900|gb|EFP21751.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu004]
gi|308336560|gb|EFP25411.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu005]
gi|308340435|gb|EFP29286.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu006]
gi|308360702|gb|EFP49553.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu011]
gi|308364317|gb|EFP53168.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu012]
gi|323717939|gb|EGB27128.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
CDC1551A]
Length = 303
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 209 GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--------PQ 260
G D LP L+ L LP D++++ + P + ARF L R+Y Y PQ
Sbjct: 105 GHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQ 164
Query: 261 AG---------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV-NFKRL 299
LD+DAM A++ L+G HDF C+ G + + +RL
Sbjct: 165 QARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRL 213
>gi|257784931|ref|YP_003180148.1| tRNA pseudouridine synthase A [Atopobium parvulum DSM 20469]
gi|257473438|gb|ACV51557.1| tRNA pseudouridine synthase A [Atopobium parvulum DSM 20469]
Length = 294
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 230 DIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDIDAMHKAAQ 273
DI + P+ +SARFD R+Y+Y W+ LD D M KAAQ
Sbjct: 123 DISIRQLFRAPQGFSARFDAQARSYRYRICADSARPILGWDHVWWYNGHLDADLMDKAAQ 182
Query: 274 YLVGTHDFRNLCKMNVGNG 292
LVG HDF++ CK G
Sbjct: 183 ALVGEHDFKSFCKAISAEG 201
>gi|152996062|ref|YP_001340897.1| tRNA pseudouridine synthase A [Marinomonas sp. MWYL1]
gi|150836986|gb|ABR70962.1| tRNA pseudouridine synthase A [Marinomonas sp. MWYL1]
Length = 274
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 18/89 (20%)
Query: 213 DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY---------------- 256
+ NE + +N +LP DI VVA SPV + ARF L R Y+Y
Sbjct: 71 ERNERAWTLGVNTHLPSDITVVAASPVSNDFHARFSALSRRYRYVIYSSDFCPAILSKGI 130
Query: 257 -WFPQAGLDIDAMHKAAQYLVGTHDFRNL 284
W LD+ AM +AA+ +GTHDF +
Sbjct: 131 TW-TYKNLDVSAMKEAAKVFLGTHDFSSF 158
>gi|433632553|ref|YP_007266181.1| tRNA pseudouridine synthase A [Mycobacterium canettii CIPT
140070010]
gi|432164146|emb|CCK61593.1| tRNA pseudouridine synthase A [Mycobacterium canettii CIPT
140070010]
Length = 297
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 209 GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--------PQ 260
G D LP L+ L LP D++++ + P + ARF L R+Y Y PQ
Sbjct: 99 GHIGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQ 158
Query: 261 AG---------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV-NFKRL 299
LD+DAM A++ L+G HDF C+ G + + +RL
Sbjct: 159 QARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRL 207
>gi|418575487|ref|ZP_13139638.1| tRNA pseudouridine synthase A [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|379326107|gb|EHY93234.1| tRNA pseudouridine synthase A [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 267
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 42/182 (23%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V S V + + R+DC+ ++Y+Y Q+ LDI+
Sbjct: 78 MNRALPDDIYVNDVSFVNDDFHCRYDCVGKSYRYKIYQSAHKDPFLCGLKTYVPEQLDIE 137
Query: 267 AMHKAAQYLVGTHDFRNLC--KMNVGNGV------------VNFKRLVTHAGVTSAWQNV 312
M+ AAQ+ +GTHDF C K V + + F +VT +G V
Sbjct: 138 KMNMAAQHFIGTHDFTGFCSQKTEVESKIRTLYESRIEKTESGFDYIVTGSGFLYNMVRV 197
Query: 313 QFNDIKEVVDSEPSFKKGQGNEKPEIIQQLV---DIEKYPRIKSAQFPWSSTGATTPNEL 369
+ EV G+G +P+ + QL+ D + P A+ + TPNEL
Sbjct: 198 LIEFLIEV---------GKGKREPQEVPQLLEARDRNQVPFTAPAEGLYLEKIYLTPNEL 248
Query: 370 FR 371
+
Sbjct: 249 IQ 250
>gi|433628597|ref|YP_007262226.1| tRNA pseudouridine synthase A [Mycobacterium canettii CIPT
140060008]
gi|432156203|emb|CCK53461.1| tRNA pseudouridine synthase A [Mycobacterium canettii CIPT
140060008]
Length = 297
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 209 GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--------PQ 260
G D LP L+ L LP D++++ + P + ARF L R+Y Y PQ
Sbjct: 99 GHIGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQ 158
Query: 261 AG---------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV-NFKRL 299
LD+DAM A++ L+G HDF C+ G + + +RL
Sbjct: 159 QARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTIRDLQRL 207
>gi|167629501|ref|YP_001680000.1| tRNA pseudouridine synthase a [Heliobacterium modesticaldum Ice1]
gi|167592241|gb|ABZ83989.1| tRNA pseudouridine synthase a [Heliobacterium modesticaldum Ice1]
Length = 259
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 24/111 (21%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW---------------- 257
D+ P+ +N LP D+ VVA VP + +RF L ++Y+Y
Sbjct: 76 DDRFPF--AMNAILPPDVAVVAAKTVPLAFHSRFGALGKHYRYTIYNHRIPSPFHRRYSH 133
Query: 258 --FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT 306
FP L +AM AAQ VGTHDFR C G+ V +F R V +T
Sbjct: 134 QVFPP--LQFEAMAAAAQCFVGTHDFRGFCA--TGSPVKDFVRTVYRCDLT 180
>gi|110800554|ref|YP_695694.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
gi|110675201|gb|ABG84188.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
Length = 248
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGL 263
++ +N LP DI+V E++ ARF+ + Y+Y W + L
Sbjct: 80 IEYINEYLPEDIRVKEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKL 139
Query: 264 DIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
D++AM + A+YL+GTHDF++ + N
Sbjct: 140 DLEAMEEGAKYLLGTHDFKSFTSLKSKN 167
>gi|408371147|ref|ZP_11168917.1| tRNA pseudouridine synthase A [Galbibacter sp. ck-I2-15]
gi|407743390|gb|EKF54967.1| tRNA pseudouridine synthase A [Galbibacter sp. ck-I2-15]
Length = 247
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Query: 209 GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW----------- 257
E D L Y LN+ LP+DI + PV + ARFD + R+Y YW
Sbjct: 66 SEAIDTKALVY--QLNSFLPKDIAIKDIYPVNDHAHARFDAVRRSYAYWVTSFKDPFLFD 123
Query: 258 ---FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMN 288
+ +A LDI AM+KAA+ L+ T DF+ K N
Sbjct: 124 YAYYLRADLDIAAMNKAAEILLETEDFQCFSKSN 157
>gi|334338934|ref|YP_004543914.1| tRNA pseudouridine synthase A [Desulfotomaculum ruminis DSM 2154]
gi|334090288|gb|AEG58628.1| tRNA pseudouridine synthase A [Desulfotomaculum ruminis DSM 2154]
Length = 251
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 31/147 (21%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF-----------------PQAGLDI 265
+N LP DI V+ PVP+ + ARF + + Y+Y P+ LD
Sbjct: 84 MNPLLPADISVLKAEPVPQDFHARFSAIAKTYRYSIYHHRIMSPLQRLYCHHEPRR-LDT 142
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ---------FND 316
AM +AAQYL+GTHDF++ G V + R + A V + +N
Sbjct: 143 GAMKQAAQYLLGTHDFKSFQAQ--GTPVRDTVRTIYRAEVVEEGPLIHIYVRGNGFLYNM 200
Query: 317 IKEVVDSEPSFKKGQGNEKPEIIQQLV 343
++ + + K G G KPE ++ ++
Sbjct: 201 VRIIAGT--LLKAGLGKIKPEEMEHII 225
>gi|393198978|ref|YP_006460820.1| pseudouridylate synthase [Solibacillus silvestris StLB046]
gi|327438309|dbj|BAK14674.1| pseudouridylate synthase [Solibacillus silvestris StLB046]
Length = 249
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 20/93 (21%)
Query: 216 ELP---YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-W-------------- 257
E+P + K LN LPRDI+V+ V E + AR+D + Y+Y W
Sbjct: 70 EIPPEKFQKALNVQLPRDIRVLHMEQVKEDFHARYDVSGKRYRYIWDCSTVQSPFRRHYT 129
Query: 258 FPQAGL--DIDAMHKAAQYLVGTHDFRNLCKMN 288
G+ +++AM +AA+ +VGTHDF C N
Sbjct: 130 VETGGVKPNVEAMREAAKAIVGTHDFSCFCAAN 162
>gi|296168687|ref|ZP_06850436.1| tRNA pseudouridine synthase A [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896596|gb|EFG76237.1| tRNA pseudouridine synthase A [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 302
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 17/87 (19%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--------PQAG------ 262
LP ++ L LP D++V+ + P + ARF L R+Y Y PQ
Sbjct: 112 LPLVRRLGRFLPTDVRVLGIARAPAGFDARFSALRRHYTYRLSTAPYGVEPQRARYVTAW 171
Query: 263 ---LDIDAMHKAAQYLVGTHDFRNLCK 286
LD+DAM A++ LVG HDF C+
Sbjct: 172 PRPLDVDAMAAASRDLVGLHDFAGFCR 198
>gi|222100131|ref|YP_002534699.1| tRNA pseudouridine synthase ACD [Thermotoga neapolitana DSM 4359]
gi|254764873|sp|B9K8Q0.1|TRUA_THENN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|221572521|gb|ACM23333.1| tRNA pseudouridine synthase A [Thermotoga neapolitana DSM 4359]
Length = 245
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 18/76 (23%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDC-----------------LFRNYKYWFPQAGLDI 265
+N NLP D+ V VP+ + RFD R Y +WFP LD+
Sbjct: 80 MNANLPDDVYVKKVFEVPKNFHPRFDVKKRIYHYFIHTSREKNVFLRKYAWWFPYE-LDL 138
Query: 266 DAMHKAAQYLVGTHDF 281
+AM KAA+YL GTHDF
Sbjct: 139 EAMRKAAKYLEGTHDF 154
>gi|84489200|ref|YP_447432.1| tRNA pseudouridine synthase A [Methanosphaera stadtmanae DSM 3091]
gi|121725515|sp|Q2NHB4.1|TRUA_METST RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|84372519|gb|ABC56789.1| TruA [Methanosphaera stadtmanae DSM 3091]
Length = 274
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW-----FPQAGLDIDAMHKAAQ 273
++ LN LP DIK++ + VP + RF L R Y Y F + LDI MH A +
Sbjct: 75 HINQLNGLLPDDIKIIGEARVPYGFKVRF-PLTRTYTYIQPISPFEKKNLDITKMHVAME 133
Query: 274 YLVGTHDFRNLCKMNVGN 291
+G H+FRN K N N
Sbjct: 134 SFIGKHNFRNFSKRNEKN 151
>gi|384098069|ref|ZP_09999188.1| tRNA pseudouridine synthase A [Imtechella halotolerans K1]
gi|383836215|gb|EID75628.1| tRNA pseudouridine synthase A [Imtechella halotolerans K1]
Length = 261
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG--------------LDIDAM 268
LN+ LP DI + PV E ARFD R Y+YW Q LDI+AM
Sbjct: 90 LNSYLPYDIAITGIHPVKEDSHARFDATQRTYEYWLTQKKSPFLNEYAYYINLPLDIEAM 149
Query: 269 HKAAQYLVGTHDFRNLCKMN 288
+KAA+ L +DF+ K N
Sbjct: 150 NKAAEVLFSYNDFQCFSKSN 169
>gi|380303255|ref|ZP_09852948.1| pseudouridylate synthase I [Brachybacterium squillarum M-6-3]
Length = 302
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF---PQAG-- 262
PG D + L L LP D+ V A +PV + ARF L R Y+Y P A
Sbjct: 92 PGRSDRDPAVALLSRLAGVLPADVVVRAATPVSGDFDARFSALGRRYRYRISDGPGAHDP 151
Query: 263 -----------LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD++AM +A+ L+G HDF + C+ G
Sbjct: 152 LRRDVLRHRRELDVEAMARASAVLLGEHDFLSFCRPREG 190
>gi|209965580|ref|YP_002298495.1| tRNA pseudouridine synthase A [Rhodospirillum centenum SW]
gi|238057735|sp|B6IPI0.1|TRUA_RHOCS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|209959046|gb|ACI99682.1| tRNA pseudouridine synthase A [Rhodospirillum centenum SW]
Length = 245
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 223 LNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDI 265
LN +L P + V+ PV + ARF CL R Y Y W Q GLD
Sbjct: 79 LNFHLKPHPVAVLRVEPVAPDFHARFSCLGRAYLYRILNRRAPAALEAGRVWHVQGGLDA 138
Query: 266 DAMHKAAQYLVGTHDFRNL 284
+AMH+AAQ LVG HDF +
Sbjct: 139 EAMHEAAQRLVGQHDFSSF 157
>gi|11499319|ref|NP_070558.1| tRNA pseudouridine synthase A [Archaeoglobus fulgidus DSM 4304]
gi|3915163|sp|O28544.1|TRUA_ARCFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|2648818|gb|AAB89516.1| pseudouridylate synthase I (truA) # [Archaeoglobus fulgidus DSM
4304]
Length = 265
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 212 SDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKA 271
S+D P +MLN LP DI AW+ V E + R R Y Y + DI AM KA
Sbjct: 66 SEDKIFP--RMLNAELPEDITAWAWAKVSEDFDPR-RAKSRVYTYVMYGSDYDISAMRKA 122
Query: 272 AQYLVGTHDFRNLCKMNVGNG 292
+ L+G HDF N K G G
Sbjct: 123 VKELIGVHDFSNFTK-KFGEG 142
>gi|157690932|ref|YP_001485394.1| tRNA pseudouridine synthase A [Bacillus pumilus SAFR-032]
gi|166991159|sp|A8F9B7.1|TRUA_BACP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157679690|gb|ABV60834.1| tRNA-pseudouridine synthase I [Bacillus pumilus SAFR-032]
Length = 247
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 18/83 (21%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------WFPQAGLDI 265
LN+ LP DI+V+ V E + ARF + + Y+Y FP LD
Sbjct: 80 LNSLLPDDIRVLKAEEVDESFHARFSVVSKEYRYKVSTETHQNVFTRQYACHFPYR-LDA 138
Query: 266 DAMHKAAQYLVGTHDFRNLCKMN 288
D M +AA YL+GTHDF + C N
Sbjct: 139 DKMREAAGYLIGTHDFTSFCAAN 161
>gi|327311135|ref|YP_004338032.1| Pseudouridylate synthase [Thermoproteus uzoniensis 768-20]
gi|326947614|gb|AEA12720.1| Pseudouridylate synthase [Thermoproteus uzoniensis 768-20]
Length = 250
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 202 RSKLTSPGEESDDN-----ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY 256
R T PG + N L L +N LPR + V ++ VPE ++ R R Y Y
Sbjct: 37 RGSRTDPGVSALGNVVVARSLKPLGQINAELPRGVWVWGYAEVPEGFNPR-RARARTYVY 95
Query: 257 WFPQAGLDIDAMHKAAQYLVGTHDFRNLCK 286
+ P G D+ + +AA VGTHD+RN K
Sbjct: 96 FAPYRGEDLGLVREAASLFVGTHDYRNFAK 125
>gi|281412654|ref|YP_003346733.1| tRNA pseudouridine synthase A [Thermotoga naphthophila RKU-10]
gi|281373757|gb|ADA67319.1| tRNA pseudouridine synthase A [Thermotoga naphthophila RKU-10]
Length = 245
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 37/76 (48%), Gaps = 18/76 (23%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDC-----------------LFRNYKYWFPQAGLDI 265
+N NLP D+ V VP + RFD R Y +WFP LD+
Sbjct: 80 MNANLPDDVYVKEVFEVPVNFHPRFDVTKRIYHYFILTSRQKNVFLRKYVWWFPYE-LDL 138
Query: 266 DAMHKAAQYLVGTHDF 281
DAM KAA+YL GTHDF
Sbjct: 139 DAMRKAAKYLEGTHDF 154
>gi|346311579|ref|ZP_08853582.1| tRNA pseudouridine synthase A [Collinsella tanakaei YIT 12063]
gi|345900642|gb|EGX70462.1| tRNA pseudouridine synthase A [Collinsella tanakaei YIT 12063]
Length = 278
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 20/131 (15%)
Query: 193 RTPVVTLKIRSKLTSPGEESDDNELP--YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 250
RT I ++ P ES+ L +++ + LP DI + +SARFD
Sbjct: 65 RTDAGVHAISQYVSFPAYESELEILRKRWMRAMAALLPSDISLNQVYHASPGFSARFDAR 124
Query: 251 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKM--NVGNG 292
R Y Y W+ + LD+ AM +AA LVG HDF++ CK+ VG
Sbjct: 125 ARTYTYRIATGESKPLLTRNYCWWHRMPLDVGAMERAAACLVGEHDFKSFCKVASAVGKP 184
Query: 293 VVNFKRLVTHA 303
F R V+ A
Sbjct: 185 TCRFVREVSFA 195
>gi|297564067|ref|YP_003683040.1| tRNA pseudouridine synthase A [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848516|gb|ADH70534.1| tRNA pseudouridine synthase A [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 279
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------- 262
L+ L LP+D++V A P + ARF LFR Y Y A
Sbjct: 84 LRRLAGVLPKDVRVRAARLAPPGFDARFSPLFRRYLYRVSDAPYGVDPLLRRDVLWHRSP 143
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD+D M+ AA+ LVG HDF CK G
Sbjct: 144 LDVDRMNAAAERLVGEHDFAAFCKRREG 171
>gi|414159383|ref|ZP_11415669.1| tRNA pseudouridine synthase A [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410884385|gb|EKS32211.1| tRNA pseudouridine synthase A [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 267
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N+ LP DI V S V + + R+DC+ + Y+Y Q LD+D
Sbjct: 78 MNSALPDDIYVKEVSIVDDDFHCRYDCVGKRYRYMVYQGAHRDVFMSGLKTYNDYDLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNQAAQQFIGTHDFTGFC 156
>gi|89100313|ref|ZP_01173178.1| pseudouridylate synthase I [Bacillus sp. NRRL B-14911]
gi|89084934|gb|EAR64070.1| pseudouridylate synthase I [Bacillus sp. NRRL B-14911]
Length = 245
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 16/83 (19%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG---------------- 262
++ LN+ LP+DI V + E + ARFD + Y+Y+ +
Sbjct: 76 WVTALNSLLPKDIAVESTEKAAEGFHARFDACGKEYRYFIYRGKIRSPFERHYSYHYPHP 135
Query: 263 LDIDAMHKAAQYLVGTHDFRNLC 285
LDI AM +AA++L+GTHDF + C
Sbjct: 136 LDIRAMREAAEHLLGTHDFSSFC 158
>gi|302876500|ref|YP_003845133.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B]
gi|307687172|ref|ZP_07629618.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B]
gi|302579357|gb|ADL53369.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B]
Length = 244
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 21/82 (25%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDC-----------------LFRNYKYWFPQAGLDI 265
+N LP DI +++ VPE + +RF+C ++RNY Y P+ L I
Sbjct: 79 INAKLPEDIVILSSEEVPEDFHSRFNCIGKTYCYSVLNRVSYPAMYRNYLYHVPRK-LSI 137
Query: 266 DAMHKAAQYLVGTHD---FRNL 284
D M KAA+ VGT+D FRNL
Sbjct: 138 DEMKKAAESFVGTYDFNAFRNL 159
>gi|328957471|ref|YP_004374857.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4]
gi|328673795|gb|AEB29841.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4]
Length = 246
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 48/112 (42%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D A+ + V K S + P L LN LPRDI V VPE++ AR
Sbjct: 53 DAGAHAKGQVANFKTTSTMEFP---------AMLDHLNRYLPRDIVVKKLEEVPERFHAR 103
Query: 247 FDC-----------------LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDF 281
++ RN+ Y FP LDID M++A LVGTHDF
Sbjct: 104 YNASGKKYSYYVWNNSIPSVFDRNFSYDFPGE-LDIDKMNEACNKLVGTHDF 154
>gi|269216172|ref|ZP_06160026.1| tRNA pseudouridine synthase A [Slackia exigua ATCC 700122]
gi|269130431|gb|EEZ61509.1| tRNA pseudouridine synthase A [Slackia exigua ATCC 700122]
Length = 331
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 17/83 (20%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ-----------------AG 262
+K +N + I V P +SARFD R Y+Y+ A
Sbjct: 152 MKSMNALVDERITVTCAEERPAGFSARFDATSREYRYFIATGNARPVLIARSVWHLRGAP 211
Query: 263 LDIDAMHKAAQYLVGTHDFRNLC 285
LD+DAM+ AA++LVG HDF++ C
Sbjct: 212 LDVDAMNTAARFLVGEHDFKSFC 234
>gi|324999254|ref|ZP_08120366.1| tRNA pseudouridine synthase a [Pseudonocardia sp. P1]
Length = 268
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------- 262
L+ LN LP D++V A + VPE + ARF L R+Y+Y A
Sbjct: 75 LRRLNRFLPPDVRVRATTRVPETFDARFSALRRHYRYRVTTASFGAEPLRARETVAWPHP 134
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 295
LD M+ A+ +VG HDF CK G V
Sbjct: 135 LDPALMNAASALMVGEHDFAAFCKRREGATTVR 167
>gi|73662003|ref|YP_300784.1| tRNA pseudouridine synthase A [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123761549|sp|Q49ZD7.1|TRUA_STAS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|72494518|dbj|BAE17839.1| tRNA pseudouridine synthase A [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 267
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 42/182 (23%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V S V + + R+DC+ ++Y+Y Q+ LDI+
Sbjct: 78 MNRALPDDIYVNDVSFVNDDFHCRYDCVGKSYRYKIYQSAHKDPFLCGLKTYVPEQLDIE 137
Query: 267 AMHKAAQYLVGTHDFRNLC--KMNVGNGV------------VNFKRLVTHAGVTSAWQNV 312
M+ AAQ+ +GTHDF C K V + + F +VT +G V
Sbjct: 138 KMNMAAQHFIGTHDFTGFCSQKTEVESKIRTLYESRIEKTESGFDYIVTGSGFLYNMVRV 197
Query: 313 QFNDIKEVVDSEPSFKKGQGNEKPEIIQQLV---DIEKYPRIKSAQFPWSSTGATTPNEL 369
+ EV G+G +P+ + QL+ D + P A+ + TPNEL
Sbjct: 198 LIAFLIEV---------GKGKREPQEVPQLLEARDRNQVPFTAPAEGLYLEKIYLTPNEL 248
Query: 370 FR 371
+
Sbjct: 249 IQ 250
>gi|453051846|gb|EME99342.1| tRNA pseudouridine synthase A [Streptomyces mobaraensis NBRC 13819
= DSM 40847]
Length = 286
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 19/101 (18%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------- 256
P E ++E L+ L LP D++V + P ++ARF ++R Y Y
Sbjct: 78 PVEVWAEHEDKLLRRLAGRLPHDVRVWRVAEAPAGFNARFSAIWRRYAYRVVDHPAGVDP 137
Query: 257 -------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W LD+DAM+ AA+ LVG HDF CK G
Sbjct: 138 LLRGHVLWHDWP-LDVDAMNAAAERLVGEHDFAAYCKKREG 177
>gi|395444632|ref|YP_006384885.1| tRNA pseudouridine synthase A [Pseudomonas putida ND6]
gi|388558629|gb|AFK67770.1| tRNA pseudouridine synthase A [Pseudomonas putida ND6]
Length = 286
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------W 257
+E + N NLP DI VV P+P + ARF R Y+Y W
Sbjct: 89 DERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARRYRYVIYNDPIRPAHLAEEVTW 148
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDF 281
+ LD+D M +AAQYL+GTHDF
Sbjct: 149 NHRP-LDVDRMAEAAQYLLGTHDF 171
>gi|392988462|ref|YP_006487055.1| tRNA pseudouridine synthase A [Enterococcus hirae ATCC 9790]
gi|392335882|gb|AFM70164.1| tRNA pseudouridine synthase A [Enterococcus hirae ATCC 9790]
Length = 249
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S+++ NE+ L LN LPRDI + +PE++ AR
Sbjct: 56 DSGTHARGQVANFKTTSQMSR-------NEM--LTFLNRYLPRDIVIKKVEEMPERFHAR 106
Query: 247 FDC-----------------LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDF 281
++ RN+ ++FPQ LD++ M++A Q L+G+HDF
Sbjct: 107 YNATGKKYSYYVWNNPIPTVFERNHSFYFPQE-LDLEKMNEACQKLMGSHDF 157
>gi|375083694|ref|ZP_09730712.1| tRNA pseudouridine synthase A [Thermococcus litoralis DSM 5473]
gi|374741694|gb|EHR78114.1| tRNA pseudouridine synthase A [Thermococcus litoralis DSM 5473]
Length = 262
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
EL ++LN++L RD+ V+ + VPE + RF + Y+Y+ G DI+ M A+
Sbjct: 69 ELTSPRILNHHL-RDVWVLGRAQVPEDFHPRFWSKGKVYRYYLLNEGFDIEKMKSCAEIF 127
Query: 276 VGTHDFRNLCKM 287
VG HDF N K+
Sbjct: 128 VGVHDFSNFAKL 139
>gi|18311353|ref|NP_563287.1| tRNA pseudouridine synthase A [Clostridium perfringens str. 13]
gi|42559846|sp|Q8XHV5.1|TRUA2_CLOPE RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|18146037|dbj|BAB82077.1| tRNA-pseudouridine synthase I [Clostridium perfringens str. 13]
Length = 244
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 31/148 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARF-----------------DCLFRNYKYWFPQAGLDI 265
LN+ LP+DI ++ V E + AR+ L RNY Y + LD+
Sbjct: 79 LNSKLPKDIVIINSEEVAEDFHARYMTTGKTYCYTILNREEPPALERNYVYHVKKQ-LDV 137
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ---------FND 316
++M +A +Y +G HDF+ + G V R +T + + ++ +N
Sbjct: 138 ESMKEACKYFLGKHDFKAFQRP--GGTVKTSVRTITDIHIETEGNKIKIYVSADGFLYNM 195
Query: 317 IKEVVDSEPSFKKGQGNEKPEIIQQLVD 344
++ +V + K G+G EKPE I++++D
Sbjct: 196 VRLIVGT--LLKVGRGKEKPEYIKEVID 221
>gi|307544826|ref|YP_003897305.1| tRNA pseudouridine synthase A [Halomonas elongata DSM 2581]
gi|307216850|emb|CBV42120.1| tRNA pseudouridine synthase A [Halomonas elongata DSM 2581]
Length = 292
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 18/87 (20%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------W 257
+E ++ N NLPRDI V PV E + ARF L R Y+Y W
Sbjct: 66 SEKAWVFGANANLPRDIAVRWVMPVGEDFHARFKALARRYRYVLLNQPSRPVLERANVTW 125
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDFRNL 284
+ LD +AMH+AAQ LVG HDF +
Sbjct: 126 C-RDPLDAEAMHEAAQVLVGEHDFSSF 151
>gi|221195458|ref|ZP_03568513.1| tRNA pseudouridine synthase A [Atopobium rimae ATCC 49626]
gi|221184645|gb|EEE17037.1| tRNA pseudouridine synthase A [Atopobium rimae ATCC 49626]
Length = 281
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 15/82 (18%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY---------------WFPQAGLD 264
L+ L DI + +SARFD L R+Y+Y W+ LD
Sbjct: 95 LRSLTALTDDDISIQEIYKAQSGFSARFDALARSYRYRISAGLRPVLAWDHAWWYNGALD 154
Query: 265 IDAMHKAAQYLVGTHDFRNLCK 286
+ AM++AAQ VG HDF++ CK
Sbjct: 155 VAAMNEAAQIFVGEHDFKSFCK 176
>gi|227502701|ref|ZP_03932750.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49725]
gi|227076431|gb|EEI14394.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49725]
Length = 293
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 29/116 (25%)
Query: 190 AYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 249
A++ P L+ RS PG+ ++ L LP D++V PE + ARF
Sbjct: 78 AHVDVPQEMLEQRSVANDPGK--------LVRRLAKLLPEDVRVHGCDFAPEGFDARFSA 129
Query: 250 LFRNYKY-------------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCK 286
L R+Y Y WF +DI AM AA LVG HDF CK
Sbjct: 130 LRRHYVYRITTSPRGALPTRARDTAEWFKP--VDIGAMQDAANALVGLHDFAAFCK 183
>gi|28212149|ref|NP_783093.1| tRNA pseudouridine synthase A [Clostridium tetani E88]
gi|38258761|sp|Q890R5.1|TRUA2_CLOTE RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|28204593|gb|AAO37030.1| tRNA pseudouridine synthase A [Clostridium tetani E88]
Length = 248
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 31/138 (22%)
Query: 206 TSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY--------- 256
T PGE+ + LN LP DI ++ VP ++ +RFDC+ + Y Y
Sbjct: 72 TIPGEK-------FKHALNRFLPEDIVILESEEVPMEFHSRFDCIGKTYVYKILNRPLFS 124
Query: 257 -------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW 309
+ + LDI++M +A+++L+GTHDF N K + GN L T +
Sbjct: 125 PIQRNYIYHVKDELDINSMIEASKFLIGTHDF-NAFKKSGGN-------LKTTVRTITNI 176
Query: 310 QNVQFNDIKEVVDSEPSF 327
++ NDI E+ S F
Sbjct: 177 NILKSNDIVEIHVSGDGF 194
>gi|311740028|ref|ZP_07713862.1| tRNA pseudouridine synthase A [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311305101|gb|EFQ81170.1| tRNA pseudouridine synthase A [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 297
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 190 AYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 249
A++ P L RS PG+ ++ L LP D++V P + ARF
Sbjct: 82 AHVDVPTEMLAQRSVAGEPGK--------LVRRLAKLLPEDVRVHGCEFAPAGFDARFSA 133
Query: 250 LFRNYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCK 286
L R+Y Y P+ L DIDAM +AA LVG HDF CK
Sbjct: 134 LRRHYVYRITTNPRGALPTRARDTAEWIKPVDIDAMQEAATALVGLHDFAAFCK 187
>gi|452954049|gb|EME59454.1| tRNA pseudouridine synthase TruA [Rhodococcus ruber BKS 20-38]
Length = 303
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 17/99 (17%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA------------ 261
D+ + ++ L LPRD++V S P + ARF + R+Y+Y A
Sbjct: 104 DDLVRLMRRLARFLPRDVRVTGISVAPPHFDARFSAVRRHYEYRLTTAVYGAEPLRARDT 163
Query: 262 -----GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 295
+D+DAM A++ L+G HDF CK G V
Sbjct: 164 VAWPKPVDVDAMRAASRSLLGLHDFAAFCKRREGATTVR 202
>gi|257083304|ref|ZP_05577665.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1]
gi|256991334|gb|EEU78636.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1]
Length = 246
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 27/122 (22%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 53 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 103
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNV 289
++ + Y Y+ FP+A LD + M +A Q L+GTHDF +
Sbjct: 104 YNATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDFIGFSALKK 162
Query: 290 GN 291
N
Sbjct: 163 TN 164
>gi|255324781|ref|ZP_05365895.1| tRNA pseudouridine synthase A [Corynebacterium tuberculostearicum
SK141]
gi|255298256|gb|EET77559.1| tRNA pseudouridine synthase A [Corynebacterium tuberculostearicum
SK141]
Length = 297
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 190 AYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 249
A++ P L RS PG+ ++ L LP D++V P + ARF
Sbjct: 82 AHVDVPTEMLAQRSVAGEPGK--------LVRRLAKLLPEDVRVHGCEFAPAGFDARFSA 133
Query: 250 LFRNYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCK 286
L R+Y Y P+ L DIDAM +AA LVG HDF CK
Sbjct: 134 LRRHYVYRITTNPRGALPTRARDTAEWIKPVDIDAMQEAATALVGLHDFAAFCK 187
>gi|229815740|ref|ZP_04446065.1| hypothetical protein COLINT_02789 [Collinsella intestinalis DSM
13280]
gi|229808656|gb|EEP44433.1| hypothetical protein COLINT_02789 [Collinsella intestinalis DSM
13280]
Length = 292
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 16/86 (18%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAG 262
+++ + LP DI + A +SARFD R Y Y W+ +
Sbjct: 109 WMRAMAALLPSDIALNAVYHARPGFSARFDARSRTYTYRIVTGDARPLLTRSVTWWHRLP 168
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMN 288
LD+DAM +AA LVG HDF++ CK +
Sbjct: 169 LDMDAMERAAACLVGEHDFKSFCKTS 194
>gi|352681310|ref|YP_004891834.1| tRNA pseudouridine synthase A [Thermoproteus tenax Kra 1]
gi|350274109|emb|CCC80754.1| tRNA pseudouridine synthase A [Thermoproteus tenax Kra 1]
Length = 251
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 202 RSKLTSPGEESDDN-----ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY 256
R T PG + N EL L +N LPR + V ++ V E ++ R R Y Y
Sbjct: 37 RGSRTDPGVSALGNVVVSPELKPLGQINAALPRGLWVWGYANVEEGFNPR-RARERTYVY 95
Query: 257 WFPQAGLDIDAMHKAAQYLVGTHDFRNLCK 286
P G D++ M +AA VG HDFRN K
Sbjct: 96 IAPYRGEDVELMRRAASLFVGVHDFRNFAK 125
>gi|210631184|ref|ZP_03296795.1| hypothetical protein COLSTE_00680 [Collinsella stercoris DSM 13279]
gi|210160151|gb|EEA91122.1| tRNA pseudouridine synthase A [Collinsella stercoris DSM 13279]
Length = 281
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 16/90 (17%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAG 262
+++ + LP DI + +SARFD R Y Y W+ +
Sbjct: 98 WMRAMAALLPDDIALSGVYHAAPGFSARFDARSRTYTYRIATGDARPLLTRNVTWWHRLP 157
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVGNG 292
LD++AM A +LVG HDF++ CKM+ G
Sbjct: 158 LDVEAMEAGAVHLVGEHDFKSFCKMSSAVG 187
>gi|337290062|ref|YP_004629083.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans BR-AD22]
gi|334698368|gb|AEG83164.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans BR-AD22]
Length = 291
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 213 DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF---PQAGL------ 263
D N ++ L LP D++V A + PE + ARF L R+Y Y P+ L
Sbjct: 85 DGNPRNLVRRLARLLPEDVRVHACTRAPEGFDARFSALRRHYVYRLTTHPRGALPTRATD 144
Query: 264 --------DIDAMHKAAQYLVGTHDFRNLCKMNVG 290
D++AM AA L+G HDF CK G
Sbjct: 145 TAHWPKQIDMNAMQAAADVLIGLHDFAAFCKYREG 179
>gi|422699954|ref|ZP_16757812.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342]
gi|422734009|ref|ZP_16790307.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341]
gi|315169224|gb|EFU13241.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341]
gi|315171531|gb|EFU15548.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342]
Length = 277
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 84 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 134
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDF 281
++ + Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 135 YNATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF 185
>gi|375137827|ref|YP_004998476.1| pseudouridylate synthase I [Mycobacterium rhodesiae NBB3]
gi|359818448|gb|AEV71261.1| pseudouridylate synthase I [Mycobacterium rhodesiae NBB3]
Length = 289
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 32/136 (23%)
Query: 182 LPLFPDPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPE 241
+P+ PHAY RT S E S+ LP ++ L +P+D++VV
Sbjct: 77 VPVHALPHAYPRT------------SRAEHSE--FLPLVRRLARFVPQDVRVVDIVRAAP 122
Query: 242 KYSARFDCLFRNYKYWF--------PQAG---------LDIDAMHKAAQYLVGTHDFRNL 284
+ ARF L R+Y Y PQ LD+DAM +AA+ LVG H+F
Sbjct: 123 GFDARFSALRRHYAYRLSTAPYGVEPQQARFVTAWPRPLDVDAMAQAARDLVGLHNFAAF 182
Query: 285 CKMNVGNGVV-NFKRL 299
C+ G + + +RL
Sbjct: 183 CRHRDGATTIRDLQRL 198
>gi|258422666|ref|ZP_05685571.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9635]
gi|417890893|ref|ZP_12534961.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21200]
gi|418283865|ref|ZP_12896602.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21202]
gi|418307469|ref|ZP_12919176.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21194]
gi|418887455|ref|ZP_13441594.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418992210|ref|ZP_13539855.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG290]
gi|257847077|gb|EEV71086.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9635]
gi|341853771|gb|EGS94651.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21200]
gi|365165776|gb|EHM57525.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21202]
gi|365245613|gb|EHM86235.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21194]
gi|377749527|gb|EHT73475.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG290]
gi|377756068|gb|EHT79965.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1524]
Length = 267
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M+KAAQ +GTHDF C
Sbjct: 138 KMNKAAQQFIGTHDFTGFC 156
>gi|256962868|ref|ZP_05567039.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704]
gi|307274272|ref|ZP_07555473.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855]
gi|256953364|gb|EEU69996.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704]
gi|306509045|gb|EFM78114.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855]
Length = 246
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 53 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 103
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDF 281
++ + Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 104 YNATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMERACQKLIGTHDF 154
>gi|407978647|ref|ZP_11159476.1| tRNA pseudouridine synthase A [Bacillus sp. HYC-10]
gi|407414843|gb|EKF36469.1| tRNA pseudouridine synthase A [Bacillus sp. HYC-10]
Length = 247
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 18/83 (21%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------WFPQAGLDI 265
LN+ LP DI+V+ V E + ARF + Y+Y +P LD+
Sbjct: 80 LNSLLPDDIRVLKAEEVDESFHARFGVASKEYRYKVSTETHQNVFTRQYACHYPYP-LDV 138
Query: 266 DAMHKAAQYLVGTHDFRNLCKMN 288
D M +AA+YL+G+HDF + C N
Sbjct: 139 DKMREAAEYLIGSHDFTSFCAAN 161
>gi|418560145|ref|ZP_13124667.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21252]
gi|371972856|gb|EHO90225.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21252]
Length = 267
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPEMLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M+KAAQ +GTHDF C
Sbjct: 138 KMNKAAQQFIGTHDFTGFC 156
>gi|169830000|ref|YP_001700158.1| tRNA pseudouridine synthase A [Lysinibacillus sphaericus C3-41]
gi|238688163|sp|B1HMV0.1|TRUA_LYSSC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|168994488|gb|ACA42028.1| tRNA pseudouridine synthase A [Lysinibacillus sphaericus C3-41]
Length = 246
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 17/87 (19%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-W--------------FPQAGL 263
Y K LN LPRDI+V++ V + AR+ + Y+Y W G+
Sbjct: 76 YRKALNVQLPRDIRVLSVEEVAHDFHARYSVTGKRYRYIWSCEPIQNPFRRHYTVDTNGV 135
Query: 264 --DIDAMHKAAQYLVGTHDFRNLCKMN 288
D+ AM KAAQ ++GTHDF C N
Sbjct: 136 KPDVVAMQKAAQAIIGTHDFSCFCAAN 162
>gi|282859476|ref|ZP_06268581.1| tRNA pseudouridine synthase A [Prevotella bivia JCVIHMP010]
gi|424900904|ref|ZP_18324446.1| pseudouridylate synthase I [Prevotella bivia DSM 20514]
gi|282587704|gb|EFB92904.1| tRNA pseudouridine synthase A [Prevotella bivia JCVIHMP010]
gi|388593104|gb|EIM33343.1| pseudouridylate synthase I [Prevotella bivia DSM 20514]
Length = 255
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW--------------FPQAGLDIDAM 268
LN LP DI V PV ARF R Y Y+ + LD D M
Sbjct: 79 LNRLLPHDISVSKIEPVTNDLHARFSASRRTYHYYLHTQKNIYQRQYSCYMSYALDFDLM 138
Query: 269 HKAAQYLVGTHDFRNLCK 286
++AAQYL+GT DF+ CK
Sbjct: 139 NEAAQYLIGTKDFKCFCK 156
>gi|256618219|ref|ZP_05475065.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200]
gi|422719066|ref|ZP_16775716.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017]
gi|256597746|gb|EEU16922.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200]
gi|315033638|gb|EFT45570.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017]
Length = 246
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 53 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 103
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDF 281
++ + Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 104 YNATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF 154
>gi|383775804|ref|YP_005460370.1| putative tRNA pseudouridine synthase [Actinoplanes missouriensis
431]
gi|381369036|dbj|BAL85854.1| putative tRNA pseudouridine synthase [Actinoplanes missouriensis
431]
Length = 271
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 17/84 (20%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------WFPQ-----------AG 262
L+ L +P D +V A PVP+ + ARF FR Y+Y W P+
Sbjct: 84 LRRLAALMPPDARVRALRPVPDTFDARFSATFRRYEYRVCDEQWGPEPLRRHDTLGWLRP 143
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCK 286
LD+D ++ AA L+G HDF CK
Sbjct: 144 LDLDRLNAAAAGLLGEHDFAAFCK 167
>gi|314935862|ref|ZP_07843214.1| tRNA pseudouridine synthase A [Staphylococcus hominis subsp.
hominis C80]
gi|313656427|gb|EFS20167.1| tRNA pseudouridine synthase A [Staphylococcus hominis subsp.
hominis C80]
Length = 267
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 16/83 (19%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA----------------G 262
++ +N+ LP DI V + V + + R+DC+ + Y+Y QA
Sbjct: 74 WIYAMNSALPEDIYVNSVKQVDDTFHCRYDCVGKRYRYKVYQAEHRNPFESGLKTFIKDD 133
Query: 263 LDIDAMHKAAQYLVGTHDFRNLC 285
LD+D M++AA++ +GTHDF C
Sbjct: 134 LDLDKMNEAAKHFIGTHDFTGFC 156
>gi|255974352|ref|ZP_05424938.1| tRNA pseudouridine synthase [Enterococcus faecalis T2]
gi|257088141|ref|ZP_05582502.1| tRNA pseudouridine synthase [Enterococcus faecalis D6]
gi|307278161|ref|ZP_07559243.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860]
gi|422723100|ref|ZP_16779642.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137]
gi|424672437|ref|ZP_18109400.1| tRNA pseudouridine synthase A [Enterococcus faecalis 599]
gi|255967224|gb|EET97846.1| tRNA pseudouridine synthase [Enterococcus faecalis T2]
gi|256996171|gb|EEU83473.1| tRNA pseudouridine synthase [Enterococcus faecalis D6]
gi|306505150|gb|EFM74338.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860]
gi|315026898|gb|EFT38830.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137]
gi|402355807|gb|EJU90568.1| tRNA pseudouridine synthase A [Enterococcus faecalis 599]
Length = 246
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 53 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 103
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDF 281
++ + Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 104 YNATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF 154
>gi|332664422|ref|YP_004447210.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM
1100]
gi|332333236|gb|AEE50337.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM
1100]
Length = 256
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 19/90 (21%)
Query: 214 DNELPYLKM----LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------- 256
D ++P +KM LN+ L DI V++ PV +K+ AR D + R+Y Y
Sbjct: 68 DTKMP-VKMIRQKLNDQLTHDINVLSVDPVSDKFHARHDAVARSYVYQISRRRNAFGKHF 126
Query: 257 -WFPQAGLDIDAMHKAAQYLVGTHDFRNLC 285
W+ + LD++ M+ AA +L+G HDF++
Sbjct: 127 MWWVKDPLDVERMNVAAAHLIGMHDFKSFS 156
>gi|358065580|ref|ZP_09152117.1| tRNA pseudouridine synthase A [Clostridium hathewayi WAL-18680]
gi|356696219|gb|EHI57841.1| tRNA pseudouridine synthase A [Clostridium hathewayi WAL-18680]
Length = 242
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA----------------GLDID 266
+N LP DI V P+++ +R + + Y YW A LD++
Sbjct: 75 VNQYLPDDIAVTQLEEAPDRFHSRLNATGKVYTYWIETAPKCSVFQRKYIYTLGRKLDVE 134
Query: 267 AMHKAAQYLVGTHDFRNLC 285
AM +AA+ L GTHDF++ C
Sbjct: 135 AMRQAAKLLCGTHDFKSFC 153
>gi|357411704|ref|YP_004923440.1| tRNA pseudouridine synthase A [Streptomyces flavogriseus ATCC
33331]
gi|320009073|gb|ADW03923.1| tRNA pseudouridine synthase A [Streptomyces flavogriseus ATCC
33331]
Length = 284
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 19/101 (18%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------- 256
P E ++E L+ + LP D+++ + P ++ARF L+R Y Y
Sbjct: 77 PAEVWAEHEEKLLRRMAGRLPLDVRIWRAAEAPAGFNARFSALWRRYAYRVGDRPGGVDP 136
Query: 257 -------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W + LD+DAM++AA + G HDF CK G
Sbjct: 137 LTRGHVLWHDRP-LDLDAMNEAAALMTGEHDFAAYCKKREG 176
>gi|257417873|ref|ZP_05594867.1| tRNA pseudouridine synthase [Enterococcus faecalis T11]
gi|257159701|gb|EEU89661.1| tRNA pseudouridine synthase [Enterococcus faecalis T11]
Length = 246
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 53 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 103
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDF 281
++ + Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 104 YNATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF 154
>gi|408680127|ref|YP_006879954.1| tRNA pseudouridine synthase A [Streptomyces venezuelae ATCC 10712]
gi|328884456|emb|CCA57695.1| tRNA pseudouridine synthase A [Streptomyces venezuelae ATCC 10712]
Length = 285
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 19/101 (18%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------- 256
P E ++ L+ L L D++V + + P ++ARF ++R Y Y
Sbjct: 78 PAELWAEHRDKLLRRLAGRLSHDVRVWSLAEAPSGFNARFSAIWRRYAYRVTDNPGGVDP 137
Query: 257 -------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W A LD+DAM++AA LVG HDF CK G
Sbjct: 138 LLRGHVLWHDWA-LDMDAMNEAAAALVGEHDFAAYCKRREG 177
>gi|126654438|ref|ZP_01726177.1| pseudouridylate synthase I [Bacillus sp. B14905]
gi|126589112|gb|EAZ83311.1| pseudouridylate synthase I [Bacillus sp. B14905]
Length = 214
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 17/87 (19%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-W--------------FPQAGL 263
Y K LN LPRDI+V++ V + AR+ + Y+Y W G+
Sbjct: 76 YRKALNVQLPRDIRVMSVEEVEHDFHARYSVTGKRYRYIWSCEPIQNPFRRHYTVETNGV 135
Query: 264 --DIDAMHKAAQYLVGTHDFRNLCKMN 288
D+ AM KAAQ ++GTHDF C N
Sbjct: 136 KPDVVAMQKAAQAIIGTHDFSCFCASN 162
>gi|73668859|ref|YP_304874.1| tRNA pseudouridine synthase A [Methanosarcina barkeri str. Fusaro]
gi|121729516|sp|Q46CU8.1|TRUA_METBF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|72396021|gb|AAZ70294.1| pseudouridylate synthase [Methanosarcina barkeri str. Fusaro]
Length = 269
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
++D L +++N+ L I V A + VP + AR D + R+Y+Y DI + +
Sbjct: 68 DTDKLNLAIPRVINSELTPGIWVWAHAEVPLSFDARRDAVSRHYRYVMSGKEYDISKIRE 127
Query: 271 AAQYLVGTHDFRNLCKMN 288
A+++L+GTHDF N + N
Sbjct: 128 ASKFLLGTHDFENFSRTN 145
>gi|228474552|ref|ZP_04059283.1| tRNA pseudouridine synthase A [Staphylococcus hominis SK119]
gi|418620287|ref|ZP_13183093.1| tRNA pseudouridine synthase A [Staphylococcus hominis VCU122]
gi|228271215|gb|EEK12583.1| tRNA pseudouridine synthase A [Staphylococcus hominis SK119]
gi|374822895|gb|EHR86907.1| tRNA pseudouridine synthase A [Staphylococcus hominis VCU122]
Length = 267
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA----------------GLDID 266
+N+ LP DI V + V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNSALPEDIYVNSVKQVDDTFHCRYDCVGKRYRYKVYQAEHRNPFESGLKTFIKDDLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AA++ +GTHDF C
Sbjct: 138 KMNEAAKHFIGTHDFTGFC 156
>gi|222529670|ref|YP_002573552.1| tRNA pseudouridine synthase A [Caldicellulosiruptor bescii DSM
6725]
gi|254789602|sp|B9MKC1.1|TRUA_ANATD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|222456517|gb|ACM60779.1| tRNA pseudouridine synthase A [Caldicellulosiruptor bescii DSM
6725]
Length = 244
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 18/80 (22%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDC-----------------LFRNYKYWFPQAGLDI 265
LN+ LP DI + P +SAR+ L RNY Y++P LD+
Sbjct: 79 LNSVLPGDISIKDAVEAPLDFSARYSARQKTYKYLIYNKKSRPALLRNYAYYYPYQ-LDV 137
Query: 266 DAMHKAAQYLVGTHDFRNLC 285
DAM +A +Y +G +DF++ C
Sbjct: 138 DAMQRACEYFIGEYDFKSFC 157
>gi|424758982|ref|ZP_18186655.1| tRNA pseudouridine synthase A [Enterococcus faecalis R508]
gi|402405403|gb|EJV37995.1| tRNA pseudouridine synthase A [Enterococcus faecalis R508]
Length = 277
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 84 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 134
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDF 281
++ + Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 135 YNATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF 185
>gi|168216665|ref|ZP_02642290.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
gi|182381201|gb|EDT78680.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
Length = 244
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 31/148 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARF-----------------DCLFRNYKYWFPQAGLDI 265
LN+ LP+DI ++ V E + AR+ L RNY Y + LD+
Sbjct: 79 LNSKLPKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNREEPPALERNYVYHVKKQ-LDV 137
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ---------FND 316
++M +A +Y +G HDF+ + G V R +T + + ++ +N
Sbjct: 138 ESMKEACKYFLGKHDFKAFQRP--GGTVKTSVRTITDIHIETEGNKIKIYVSADGFLYNM 195
Query: 317 IKEVVDSEPSFKKGQGNEKPEIIQQLVD 344
++ +V + K G+G EKPE I++++D
Sbjct: 196 VRLIVGT--LLKVGRGKEKPEYIKEVID 221
>gi|422730419|ref|ZP_16786811.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0012]
gi|315149110|gb|EFT93126.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0012]
Length = 246
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 53 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 103
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDF 281
++ + Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 104 YNATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF 154
>gi|227517362|ref|ZP_03947411.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104]
gi|424677833|ref|ZP_18114683.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV103]
gi|424679416|ref|ZP_18116239.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV116]
gi|424684645|ref|ZP_18121355.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV129]
gi|424688492|ref|ZP_18125097.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV25]
gi|424691247|ref|ZP_18127771.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV31]
gi|424694286|ref|ZP_18130690.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV37]
gi|424696354|ref|ZP_18132707.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV41]
gi|424701590|ref|ZP_18137762.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV62]
gi|424704459|ref|ZP_18140554.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV63]
gi|424711587|ref|ZP_18143799.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV65]
gi|424716367|ref|ZP_18145678.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV68]
gi|424722136|ref|ZP_18151202.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV72]
gi|424724801|ref|ZP_18153739.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV73]
gi|424727495|ref|ZP_18156124.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV81]
gi|424743372|ref|ZP_18171684.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV85]
gi|424755023|ref|ZP_18182912.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV93]
gi|227075232|gb|EEI13195.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104]
gi|402353643|gb|EJU88469.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV103]
gi|402356873|gb|EJU91593.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV116]
gi|402360368|gb|EJU94969.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV25]
gi|402360740|gb|EJU95335.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV129]
gi|402362446|gb|EJU96977.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV31]
gi|402371071|gb|EJV05248.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV37]
gi|402371335|gb|EJV05500.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV62]
gi|402378093|gb|EJV11973.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV41]
gi|402381700|gb|EJV15399.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV63]
gi|402383390|gb|EJV16997.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV65]
gi|402388224|gb|EJV21672.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV68]
gi|402389705|gb|EJV23093.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV72]
gi|402393869|gb|EJV27076.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV73]
gi|402396575|gb|EJV29630.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV81]
gi|402400199|gb|EJV33039.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV85]
gi|402401505|gb|EJV34275.1| tRNA pseudouridine synthase A [Enterococcus faecalis ERV93]
Length = 277
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 84 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 134
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDF 281
++ + Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 135 YNATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF 185
>gi|110799502|ref|YP_697060.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
gi|168205200|ref|ZP_02631205.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|168211871|ref|ZP_02637496.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
gi|110674149|gb|ABG83136.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
gi|170663322|gb|EDT16005.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|170710156|gb|EDT22338.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
Length = 244
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 31/148 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARF-----------------DCLFRNYKYWFPQAGLDI 265
LN+ LP+DI ++ V E + AR+ L RNY Y + LD+
Sbjct: 79 LNSKLPKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNREEPPALERNYVYHVKKQ-LDV 137
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ---------FND 316
++M +A +Y +G HDF+ + G V R +T + + ++ +N
Sbjct: 138 ESMKEACKYFLGKHDFKAFQRP--GGTVKTSVRTITDIHIETEGNKIKIYVSADGFLYNM 195
Query: 317 IKEVVDSEPSFKKGQGNEKPEIIQQLVD 344
++ +V + K G+G EKPE I++++D
Sbjct: 196 VRLIVGT--LLKVGRGKEKPEYIKEVID 221
>gi|220903970|ref|YP_002479282.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868269|gb|ACL48604.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 259
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ---------------- 260
L + LN LPRDI+V+ SP + AR D L + Y Y F Q
Sbjct: 75 LDWRHSLNAVLPRDIRVLDASPAAPDFHARKDALRKTYAYQFWQDRRFLPPHVRPYVWNC 134
Query: 261 AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHA 303
LD+DAM A +L+G HDF L N G V + +R + A
Sbjct: 135 GMLDLDAMRDALPFLLGRHDFAGL--RNAGTDVESTERTIMDA 175
>gi|91776053|ref|YP_545809.1| tRNA pseudouridine synthase A [Methylobacillus flagellatus KT]
gi|123254255|sp|Q1H0L9.1|TRUA_METFK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|91710040|gb|ABE49968.1| tRNA pseudouridine synthase A [Methylobacillus flagellatus KT]
Length = 261
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 16/87 (18%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF-----------P 259
E+ ++ +++ +N LPR ++V+ V ++ ARFD R+Y+YW
Sbjct: 66 EAVRSQTAWVRGVNTKLPRGVRVLWAKEVDPRFHARFDAYQRSYQYWLINQPVAPAVMAG 125
Query: 260 QAG-----LDIDAMHKAAQYLVGTHDF 281
+AG LD+ AM +A YL+G HDF
Sbjct: 126 KAGWFHQPLDLQAMQEAMAYLLGQHDF 152
>gi|293388406|ref|ZP_06632914.1| tRNA pseudouridine synthase A, partial [Enterococcus faecalis S613]
gi|291082181|gb|EFE19144.1| tRNA pseudouridine synthase A [Enterococcus faecalis S613]
Length = 280
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 87 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 137
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDF 281
++ + Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 138 YNATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF 188
>gi|420155408|ref|ZP_14662270.1| tRNA pseudouridine(38-40) synthase [Clostridium sp. MSTE9]
gi|394759186|gb|EJF41965.1| tRNA pseudouridine(38-40) synthase [Clostridium sp. MSTE9]
Length = 251
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 34/174 (19%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNY-------------------KYWFPQAGL 263
+N+ LP D+ V++ VP + AR+ C + Y YW+P +
Sbjct: 79 MNHFLPPDVAVLSCREVPMDFHARYSCRGKEYVYQIWNAPVRDPFLYGYALHYWYP---M 135
Query: 264 DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKE---- 319
D++ +++AA + +GTHDF + C ++ + N R VT A V+ V+F
Sbjct: 136 DLEKLNRAAAHYLGTHDFTSFCTIDARDA-GNMVRTVTKAEVSREGDMVRFTVAANGFLY 194
Query: 320 ---VVDSEPSFKKGQGNEKPEIIQQLVDIEKYPRIKSAQFPWSSTGATTPNELF 370
+ + + QG +PE I Q+++ R + P + G N +F
Sbjct: 195 HMVRIMAGTLLRVAQGKFEPEQIPQILE----QRNRHIAGPTAPPGGLYLNRVF 244
>gi|323357344|ref|YP_004223740.1| pseudouridylate synthase [Microbacterium testaceum StLB037]
gi|323273715|dbj|BAJ73860.1| pseudouridylate synthase [Microbacterium testaceum StLB037]
Length = 285
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 17/74 (22%)
Query: 230 DIKVVAWSPVPEKYSARFDCLFRNYKYWFP--QAG---------------LDIDAMHKAA 272
D+ V S PE + ARF ++R Y Y QAG LD+DAMH AA
Sbjct: 102 DVTVHRSSCAPEGFDARFSAVWRRYSYRIADAQAGYEPLERLRTTSVRASLDVDAMHAAA 161
Query: 273 QYLVGTHDFRNLCK 286
Q L+G HDF CK
Sbjct: 162 QRLIGLHDFAAYCK 175
>gi|390960509|ref|YP_006424343.1| putative pseudouridine synthase [Thermococcus sp. CL1]
gi|390518817|gb|AFL94549.1| putative pseudouridine synthase [Thermococcus sp. CL1]
Length = 267
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDA 267
PGE +D L ++LN++L RD+ V+ + VP+++ RF + Y+Y+ G D++
Sbjct: 69 PGERAD---LAKPEVLNHHL-RDVWVLGVAEVPDEFHPRFWARGKTYRYYLVDEGFDLET 124
Query: 268 MHKAAQYLVGTHDFRNLCKMNVGN 291
M + A+ GTHDF K+ G
Sbjct: 125 MLECAKLFEGTHDFSAFAKLEPGR 148
>gi|227554442|ref|ZP_03984489.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22]
gi|229547551|ref|ZP_04436276.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322]
gi|255970776|ref|ZP_05421362.1| tRNA pseudouridine synthase [Enterococcus faecalis T1]
gi|256761150|ref|ZP_05501730.1| tRNA pseudouridine synthase [Enterococcus faecalis T3]
gi|256960384|ref|ZP_05564555.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96]
gi|257080567|ref|ZP_05574928.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol]
gi|293384357|ref|ZP_06630242.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712]
gi|307274425|ref|ZP_07555609.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134]
gi|307287287|ref|ZP_07567351.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109]
gi|307289762|ref|ZP_07569700.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411]
gi|312902050|ref|ZP_07761311.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470]
gi|312908558|ref|ZP_07767502.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512]
gi|312908972|ref|ZP_07767834.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516]
gi|312951751|ref|ZP_07770643.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102]
gi|384516827|ref|YP_005704132.1| tRNA pseudouridine synthase A [Enterococcus faecalis 62]
gi|421514336|ref|ZP_15961026.1| tRNA pseudouridine synthase A [Enterococcus faecalis ATCC 29212]
gi|422684612|ref|ZP_16742845.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4000]
gi|422691913|ref|ZP_16749941.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0031]
gi|422693620|ref|ZP_16751630.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4244]
gi|422702460|ref|ZP_16760295.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1302]
gi|422713974|ref|ZP_16770722.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309A]
gi|422716729|ref|ZP_16773431.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309B]
gi|422724999|ref|ZP_16781469.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0312]
gi|227176427|gb|EEI57399.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22]
gi|229307324|gb|EEN73311.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322]
gi|255961794|gb|EET94270.1| tRNA pseudouridine synthase [Enterococcus faecalis T1]
gi|256682401|gb|EEU22096.1| tRNA pseudouridine synthase [Enterococcus faecalis T3]
gi|256950880|gb|EEU67512.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96]
gi|256988597|gb|EEU75899.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol]
gi|291078349|gb|EFE15713.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712]
gi|306499218|gb|EFM68695.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411]
gi|306501620|gb|EFM70914.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109]
gi|306508935|gb|EFM78021.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134]
gi|310625525|gb|EFQ08808.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512]
gi|310630239|gb|EFQ13522.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102]
gi|311290672|gb|EFQ69228.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516]
gi|311290832|gb|EFQ69388.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470]
gi|315030617|gb|EFT42549.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4000]
gi|315148974|gb|EFT92990.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4244]
gi|315153400|gb|EFT97416.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0031]
gi|315160015|gb|EFU04032.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0312]
gi|315166006|gb|EFU10023.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1302]
gi|315575028|gb|EFU87219.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309B]
gi|315581086|gb|EFU93277.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309A]
gi|323478960|gb|ADX78399.1| tRNA pseudouridine synthase A [Enterococcus faecalis 62]
gi|401672554|gb|EJS79022.1| tRNA pseudouridine synthase A [Enterococcus faecalis ATCC 29212]
Length = 246
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 53 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 103
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDF 281
++ + Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 104 YNATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF 154
>gi|103485743|ref|YP_615304.1| tRNA pseudouridine synthase A [Sphingopyxis alaskensis RB2256]
gi|123253621|sp|Q1GWK1.1|TRUA_SPHAL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|98975820|gb|ABF51971.1| tRNA pseudouridine synthase A [Sphingopyxis alaskensis RB2256]
Length = 246
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 17/78 (21%)
Query: 221 KMLNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGL 263
+ LN L P I V+ VP+ + ARF C+ R+Y+Y W L
Sbjct: 77 EALNAQLRPAPIAVIGCEVVPDDWHARFACIGRSYEYRIVNRRAPLTWDKGLAWQVARPL 136
Query: 264 DIDAMHKAAQYLVGTHDF 281
D+DAMH+AAQ L+G HDF
Sbjct: 137 DVDAMHEAAQQLIGLHDF 154
>gi|256854698|ref|ZP_05560062.1| tRNA pseudouridine synthase [Enterococcus faecalis T8]
gi|256710258|gb|EEU25302.1| tRNA pseudouridine synthase [Enterococcus faecalis T8]
Length = 246
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 53 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 103
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDF 281
++ + Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 104 YNATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF 154
>gi|256958303|ref|ZP_05562474.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5]
gi|257078388|ref|ZP_05572749.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1]
gi|257420509|ref|ZP_05597499.1| tRNA pseudouridine synthase [Enterococcus faecalis X98]
gi|294780153|ref|ZP_06745525.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1]
gi|307268416|ref|ZP_07549794.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248]
gi|397701171|ref|YP_006538959.1| tRNA pseudouridine synthase A [Enterococcus faecalis D32]
gi|422708872|ref|ZP_16766392.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0027]
gi|422868413|ref|ZP_16914955.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1467]
gi|256948799|gb|EEU65431.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5]
gi|256986418|gb|EEU73720.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1]
gi|257162333|gb|EEU92293.1| tRNA pseudouridine synthase [Enterococcus faecalis X98]
gi|294452696|gb|EFG21126.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1]
gi|306515223|gb|EFM83760.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248]
gi|315036592|gb|EFT48524.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0027]
gi|329575477|gb|EGG57017.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1467]
gi|397337810|gb|AFO45482.1| tRNA pseudouridine synthase A [Enterococcus faecalis D32]
Length = 246
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 53 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 103
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDF 281
++ + Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 104 YNATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF 154
>gi|229548121|ref|ZP_04436846.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200]
gi|257091270|ref|ZP_05585631.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188]
gi|257417169|ref|ZP_05594163.1| tRNA pseudouridine synthase [Enterococcus faecalis ARO1/DG]
gi|300861430|ref|ZP_07107514.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11]
gi|312905329|ref|ZP_07764444.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635]
gi|422688399|ref|ZP_16746554.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0630]
gi|422731451|ref|ZP_16787818.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0645]
gi|422738250|ref|ZP_16793451.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2141]
gi|428768142|ref|YP_007154253.1| tRNA pseudouridine synthase [Enterococcus faecalis str. Symbioflor
1]
gi|229306807|gb|EEN72803.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200]
gi|257000082|gb|EEU86602.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188]
gi|257158997|gb|EEU88957.1| tRNA pseudouridine synthase [Enterococcus faecalis ARO1/DG]
gi|295114364|emb|CBL33001.1| pseudouridylate synthase I [Enterococcus sp. 7L76]
gi|300848891|gb|EFK76644.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11]
gi|310631353|gb|EFQ14636.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635]
gi|315145838|gb|EFT89854.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2141]
gi|315162508|gb|EFU06525.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0645]
gi|315578608|gb|EFU90799.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0630]
gi|427186315|emb|CCO73539.1| tRNA pseudouridine synthase [Enterococcus faecalis str. Symbioflor
1]
Length = 246
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 53 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 103
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDF 281
++ + Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 104 YNATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF 154
>gi|399911407|ref|ZP_10779721.1| tRNA pseudouridine synthase A [Halomonas sp. KM-1]
Length = 312
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 16/83 (19%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW----------------F 258
+E ++ +N NL RD+ V VP+ + ARF L R Y+Y +
Sbjct: 84 SEKAWVFGVNANLARDVAVRWVREVPDDFHARFKALARRYRYLILNQMSRPVLERANVTW 143
Query: 259 PQAGLDIDAMHKAAQYLVGTHDF 281
+ LD DAMH+AAQ LVG HDF
Sbjct: 144 CRDPLDADAMHRAAQALVGEHDF 166
>gi|384514261|ref|YP_005709354.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1RF]
gi|430360085|ref|ZP_19426062.1| tRNA pseudouridine synthase [Enterococcus faecalis OG1X]
gi|430366115|ref|ZP_19427296.1| tRNA pseudouridine synthase [Enterococcus faecalis M7]
gi|327536150|gb|AEA94984.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1RF]
gi|429512997|gb|ELA02590.1| tRNA pseudouridine synthase [Enterococcus faecalis OG1X]
gi|429517129|gb|ELA06596.1| tRNA pseudouridine synthase [Enterococcus faecalis M7]
Length = 246
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 53 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 103
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDF 281
++ + Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 104 YNATGKQYSYYVWNRPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF 154
>gi|312622107|ref|YP_004023720.1| tRNA pseudouridine synthase a [Caldicellulosiruptor kronotskyensis
2002]
gi|312202574|gb|ADQ45901.1| tRNA pseudouridine synthase A [Caldicellulosiruptor kronotskyensis
2002]
Length = 244
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 18/80 (22%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDC-----------------LFRNYKYWFPQAGLDI 265
LN+ LP DI + VP +SAR+ L RNY Y++P LD+
Sbjct: 79 LNSVLPGDISIKDAIEVPLDFSARYSARQKTYKYLIYNKKSRPALLRNYAYYYPYQ-LDV 137
Query: 266 DAMHKAAQYLVGTHDFRNLC 285
DAM + +Y +G +DF++ C
Sbjct: 138 DAMQRTCEYFIGEYDFKSFC 157
>gi|343502530|ref|ZP_08740379.1| tRNA pseudouridine synthase A [Vibrio tubiashii ATCC 19109]
gi|418481529|ref|ZP_13050567.1| tRNA pseudouridine synthase A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342814160|gb|EGU49110.1| tRNA pseudouridine synthase A [Vibrio tubiashii ATCC 19109]
gi|384570860|gb|EIF01408.1| tRNA pseudouridine synthase A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 264
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 49/158 (31%)
Query: 224 NNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDIDA 267
N NLP DI V VPE++ ARF R Y+Y + LD +
Sbjct: 79 NANLPDDIAVRWAKEVPEEFHARFSATARRYRYIIFNSALRPGILSSGVSHYHGELDENK 138
Query: 268 MHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKE-----VVD 322
MH+AAQYL+G +DF +F+ TH S W+N+ ++ V+D
Sbjct: 139 MHQAAQYLLGENDF------------TSFR--ATHCQSRSPWRNMMHINVTRHNQYVVID 184
Query: 323 SEPS--------------FKKGQGNEKPEIIQQLVDIE 346
+ + G+G +KPE I++L++I+
Sbjct: 185 IKANAFVHHMVRNITGSLICVGRGEQKPEWIKELLEIK 222
>gi|403510182|ref|YP_006641820.1| tRNA pseudouridine(38-40) synthase [Nocardiopsis alba ATCC
BAA-2165]
gi|402802086|gb|AFR09496.1| tRNA pseudouridine(38-40) synthase [Nocardiopsis alba ATCC
BAA-2165]
Length = 308
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 17/88 (19%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------- 262
L+ L LP+D++V P + ARF LFR Y Y A
Sbjct: 113 LRRLAGVLPKDVRVSGVRLAPPGFDARFSPLFRRYVYRVSDAPYGVEPLRRRDVLWHRRP 172
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD+D M++AA LVG HDF CK G
Sbjct: 173 LDVDRMNEAAARLVGEHDFAAFCKKREG 200
>gi|358459805|ref|ZP_09169999.1| tRNA pseudouridine synthase A [Frankia sp. CN3]
gi|357076994|gb|EHI86459.1| tRNA pseudouridine synthase A [Frankia sp. CN3]
Length = 278
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 221 KMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG-----------------L 263
+ LN L R ++V +P P + ARF L R Y Y A L
Sbjct: 86 RRLNGVLDRAVRVTGLAPAPPGFDARFSALSRRYAYRISDASYGADPLRRHDTLAWPRPL 145
Query: 264 DIDAMHKAAQYLVGTHDFRNLCKMNVG 290
D D M +AA L+G HDF C+ G
Sbjct: 146 DADGMRRAALVLLGEHDFAAFCRRREG 172
>gi|336476042|ref|YP_004615183.1| tRNA pseudouridine synthase A [Methanosalsum zhilinae DSM 4017]
gi|335929423|gb|AEH59964.1| tRNA pseudouridine synthase A [Methanosalsum zhilinae DSM 4017]
Length = 271
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 214 DNELPYL---KMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
D E P L +++N+ LP I A + VP+ + R + R+Y+Y +DI +
Sbjct: 68 DTEAPNLAIPRVINSKLPESIWAWAHAEVPDDFDPRRNAKTRSYRYIMSGENIDISKIRA 127
Query: 271 AAQYLVGTHDFRNLC 285
A++Y GTHDF N C
Sbjct: 128 ASRYFTGTHDFLNFC 142
>gi|422707940|ref|ZP_16765474.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0043]
gi|315154834|gb|EFT98850.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0043]
Length = 277
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 84 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 134
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDF 281
++ + Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 135 YNATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF 185
>gi|302871559|ref|YP_003840195.1| tRNA pseudouridine synthase A [Caldicellulosiruptor obsidiansis
OB47]
gi|302574418|gb|ADL42209.1| tRNA pseudouridine synthase A [Caldicellulosiruptor obsidiansis
OB47]
Length = 244
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 18/83 (21%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDC-----------------LFRNYKYWFPQAGLDI 265
LN+ LP DI V V +SAR+ L RNY Y++P LD+
Sbjct: 79 LNSVLPGDISVKDAIEVSLDFSARYSAKQKTYKYLIYNKKSRPALLRNYAYYYPYE-LDV 137
Query: 266 DAMHKAAQYLVGTHDFRNLCKMN 288
DAM +A +Y +G +DF++ C ++
Sbjct: 138 DAMQRACEYFIGEYDFKSFCSVD 160
>gi|374988975|ref|YP_004964470.1| tRNA pseudouridine synthase A [Streptomyces bingchenggensis BCW-1]
gi|297159627|gb|ADI09339.1| tRNA pseudouridine synthase A [Streptomyces bingchenggensis BCW-1]
Length = 292
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 19/89 (21%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------WFPQA 261
L+ L LP DI+V + P ++ARF ++R Y Y W
Sbjct: 92 LRRLAGRLPHDIRVWSVGEAPPGFNARFSAIWRRYVYRVVDHPGGVDPLLRGHVLWHDWP 151
Query: 262 GLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD+DAM++AAQ L+G HDF CK G
Sbjct: 152 -LDVDAMNEAAQKLLGEHDFAAYCKKRDG 179
>gi|299541963|ref|ZP_07052286.1| tRNA pseudouridine synthase A [Lysinibacillus fusiformis ZC1]
gi|424739401|ref|ZP_18167820.1| tRNA pseudouridine synthase A [Lysinibacillus fusiformis ZB2]
gi|298725701|gb|EFI66342.1| tRNA pseudouridine synthase A [Lysinibacillus fusiformis ZC1]
gi|422946798|gb|EKU41204.1| tRNA pseudouridine synthase A [Lysinibacillus fusiformis ZB2]
Length = 246
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 24/108 (22%)
Query: 198 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY- 256
TL + L P E+ Y K LN LPRDI+V++ V + AR+D + Y+Y
Sbjct: 62 TLHFDTSLAIPAEK-------YRKALNVQLPRDIRVLSVEEVAHDFHARYDVAGKRYRYI 114
Query: 257 W--------------FPQAGL--DIDAMHKAAQYLVGTHDFRNLCKMN 288
W G+ +++AM +AA+ + GTHDF C N
Sbjct: 115 WSCEPIQSPFRRYYTVETNGVKPNVEAMQEAAKAITGTHDFSCFCAAN 162
>gi|229821589|ref|YP_002883115.1| tRNA pseudouridine synthase A [Beutenbergia cavernae DSM 12333]
gi|229567502|gb|ACQ81353.1| tRNA pseudouridine synthase A [Beutenbergia cavernae DSM 12333]
Length = 286
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 53/138 (38%), Gaps = 17/138 (12%)
Query: 170 VKQPHPPHIPPYLPLFPDPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPR 229
++ P PP + HA + V L + L +PG D L LP
Sbjct: 42 LRLPEPPRLTVAGRTDAGVHARGQVAHVDLPREAYLAAPGRSERDPGAALRTRLAGVLPP 101
Query: 230 DIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG-----------------LDIDAMHKAA 272
D+ V +P P + ARF ++R Y Y G LD+ AM AA
Sbjct: 102 DVVVGHVAPAPPGFDARFSAIWRRYAYRVADDGALHDPLRRGWTVWHRRPLDVVAMDAAA 161
Query: 273 QYLVGTHDFRNLCKMNVG 290
+ L+G HDF C+ G
Sbjct: 162 RRLLGEHDFAAFCRPREG 179
>gi|395644499|ref|ZP_10432359.1| tRNA pseudouridine synthase A [Methanofollis liminatans DSM 4140]
gi|395441239|gb|EJG05996.1| tRNA pseudouridine synthase A [Methanofollis liminatans DSM 4140]
Length = 297
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTH 279
+ L LP DI W+ V + +S R + R Y+Y+F + D+ AM +AAQ VG H
Sbjct: 76 VAALGFELPGDIWTTGWATVHDGFSPRKEARSRTYRYYFSEEFGDVPAMDEAAQEFVGEH 135
Query: 280 DFRNLCKMNVGNGVVNFKRLVTHAGV 305
DF + + + + R V AGV
Sbjct: 136 DFTRFSRQSERSPI----RRVISAGV 157
>gi|86739325|ref|YP_479725.1| tRNA pseudouridine synthase A [Frankia sp. CcI3]
gi|123737799|sp|Q2JFE6.1|TRUA_FRASC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|86566187|gb|ABD09996.1| tRNA pseudouridine synthase A [Frankia sp. CcI3]
Length = 274
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 18/101 (17%)
Query: 213 DDNELPYL-KMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA---------- 261
DD L L + LN L R ++++ +P P + ARF L R Y Y A
Sbjct: 73 DDVPLGGLARRLNGVLDRAVRIIGLAPAPPGFDARFSALSRRYVYRITDAPYGAEPLRRF 132
Query: 262 -------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 295
LD+ AM AA +LVG HDF C+ G V
Sbjct: 133 DTLAWPRPLDVPAMAAAALFLVGEHDFAAFCRRREGATTVR 173
>gi|387781182|ref|YP_005755980.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus LGA251]
gi|344178284|emb|CCC88770.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus LGA251]
Length = 267
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ ++Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKHYRYKVYQAQHRDPFQSGLKTFIPETLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|312882128|ref|ZP_07741878.1| tRNA pseudouridine synthase A [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370264|gb|EFP97766.1| tRNA pseudouridine synthase A [Vibrio caribbenthicus ATCC BAA-2122]
Length = 264
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 65/158 (41%), Gaps = 49/158 (31%)
Query: 224 NNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF----------------PQAGLDIDA 267
N NLP+DI V VP+++ ARF R Y+Y LD+
Sbjct: 79 NANLPKDIAVRWAKEVPDEFHARFSATARRYRYLIFNDALRPGILSSGVSHYHGDLDVTQ 138
Query: 268 MHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKE-----VVD 322
MHKA QYL+G +DF +F+ TH S W+N+ ++ VVD
Sbjct: 139 MHKAGQYLLGENDF------------TSFR--ATHCQSKSPWRNLMHLNVTSHGKYIVVD 184
Query: 323 SEPS--------------FKKGQGNEKPEIIQQLVDIE 346
+ + G+G +KPE I+ L+ I+
Sbjct: 185 IKANAFVHHMVRNIVGSLLVVGRGEKKPEWIRDLLAIK 222
>gi|118616627|ref|YP_904959.1| tRNA pseudouridine synthase A [Mycobacterium ulcerans Agy99]
gi|118568737|gb|ABL03488.1| pseudouridine synthase a, TruA [Mycobacterium ulcerans Agy99]
Length = 260
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 209 GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--------PQ 260
D LP ++ L LP D++V+ + P + ARF L R+Y Y PQ
Sbjct: 60 ARAGDPEFLPLVRRLARFLPADLRVLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQ 119
Query: 261 AG---------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV-NFKRL 299
LDIDAM A+Q L+G H+F C+ G + + +RL
Sbjct: 120 QARYVTVWPRELDIDAMTVASQELLGLHNFAAFCRRREGATTIRDLQRL 168
>gi|56961964|ref|YP_173686.1| pseudouridylate synthase [Bacillus clausii KSM-K16]
gi|62901228|sp|Q5WLN0.1|TRUA_BACSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|56908198|dbj|BAD62725.1| pseudouridylate synthase I [Bacillus clausii KSM-K16]
Length = 261
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFP----------------QAG 262
++ LN +LP DI V + V + AR+ + Y+Y+ +
Sbjct: 76 WVSALNTHLPDDIVVTNAAMVEPDFHARYGAQAKEYRYYIQCGPFENVFRRHFAVHIKQA 135
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
LD+ AM AA++L+GTHDF C N V + R +TH V
Sbjct: 136 LDVPAMQTAAKHLLGTHDFSAFCAAN--TTVTDKVRTITHVAV 176
>gi|198427898|ref|XP_002122466.1| PREDICTED: similar to TAF8 RNA polymerase II, TATA box binding
protein (TBP)-associated factor, 43kDa [Ciona
intestinalis]
Length = 279
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 87 NWYKRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRP 146
N +T ++ + EVG + + E + R P DV+ AL E+G L Y++R
Sbjct: 34 NIVLETLTEMLQSYLTEVGNSTRAYYEHSGRTIPTDKDVIFALSEMGFRNKSLLQYSRRG 93
Query: 147 MRTVFPPVAPSTQPKPLSILQAGVKQPHPPHIPP--YLPLFPDPHAYIRT 194
R + + +LQ G + P ++P P FPDPH+YIRT
Sbjct: 94 KRINIGQIVKTVDTSNPPVLQVGKSKGFPTYVPENHKYPHFPDPHSYIRT 143
>gi|433645909|ref|YP_007290911.1| pseudouridylate synthase I [Mycobacterium smegmatis JS623]
gi|433295686|gb|AGB21506.1| pseudouridylate synthase I [Mycobacterium smegmatis JS623]
Length = 289
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 18/108 (16%)
Query: 210 EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--------PQA 261
E D LP ++ L LP D++VV + ARF L R+Y Y PQ
Sbjct: 91 REGDSEFLPLVRRLGRFLPADVRVVDIDRAAAGFDARFSALRRHYVYRISTAPYGVEPQE 150
Query: 262 G---------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV-NFKRL 299
LD+DAM A++ LVG H+F C+ G + + +RL
Sbjct: 151 ARFVTAWPRPLDVDAMSAASRNLVGLHNFAAFCRHREGATTIRDLQRL 198
>gi|170289026|ref|YP_001739264.1| tRNA pseudouridine synthase ACD [Thermotoga sp. RQ2]
gi|403253470|ref|ZP_10919771.1| tRNA pseudouridine synthase ACD [Thermotoga sp. EMP]
gi|238688847|sp|B1LB83.1|TRUA_THESQ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|170176529|gb|ACB09581.1| tRNA pseudouridine synthase A [Thermotoga sp. RQ2]
gi|402811004|gb|EJX25492.1| tRNA pseudouridine synthase ACD [Thermotoga sp. EMP]
Length = 245
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 37/76 (48%), Gaps = 18/76 (23%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDC-----------------LFRNYKYWFPQAGLDI 265
+N NLP D+ V V + + RFD R Y +WFP LD+
Sbjct: 80 MNANLPDDVYVKEVFEVSKNFHPRFDVKKRIYHYFILTSKQKNVFLRKYVWWFPYE-LDL 138
Query: 266 DAMHKAAQYLVGTHDF 281
DAM KAA+YL GTHDF
Sbjct: 139 DAMRKAAKYLEGTHDF 154
>gi|359401428|ref|ZP_09194396.1| tRNA pseudouridine synthase A [Novosphingobium pentaromativorans
US6-1]
gi|357597103|gb|EHJ58853.1| tRNA pseudouridine synthase A [Novosphingobium pentaromativorans
US6-1]
Length = 248
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 220 LKMLNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAG 262
++ +N L P I V+A VP+ + ARF C+ R Y Y W
Sbjct: 76 MEAINAKLRPDPIAVIACEEVPDDWHARFSCIGRAYIYRIVNRRAPLTLERGKAWQVAKP 135
Query: 263 LDIDAMHKAAQYLVGTHDF 281
LD AMH+AAQ+LVG HDF
Sbjct: 136 LDAQAMHRAAQFLVGRHDF 154
>gi|283795894|ref|ZP_06345047.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1]
gi|291076529|gb|EFE13893.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1]
Length = 275
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 16/76 (21%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
LN LP DI V++ VPE++ +R + + + Y Y AG LD+
Sbjct: 101 LNRYLPEDIAVISAMEVPERFHSRLNAVEKTYLYQIETAGRKNVFERKYIYGLGEELDLL 160
Query: 267 AMHKAAQYLVGTHDFR 282
AM +AA+ L+G+HDFR
Sbjct: 161 AMKEAAKLLLGSHDFR 176
>gi|163791438|ref|ZP_02185847.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7]
gi|159873302|gb|EDP67397.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7]
Length = 246
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 39/78 (50%), Gaps = 16/78 (20%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW---------------FPQAG-L 263
L LN LPRDI V VPE++ AR++ + Y Y+ + AG L
Sbjct: 77 LDHLNRYLPRDIVVKKLEEVPERFHARYNASGKKYSYYVWNNSVPSVFERNFSYEYAGDL 136
Query: 264 DIDAMHKAAQYLVGTHDF 281
DID M+KA LVG HDF
Sbjct: 137 DIDKMNKACDKLVGKHDF 154
>gi|312793879|ref|YP_004026802.1| tRNA pseudouridine synthase a [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312181019|gb|ADQ41189.1| tRNA pseudouridine synthase A [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 244
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 18/80 (22%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDC-----------------LFRNYKYWFPQAGLDI 265
LN+ LP DI + VP +SAR+ L RNY Y +P LD+
Sbjct: 79 LNSVLPGDISIKDAVEVPLDFSARYSAKQKTYKYLIYNKKSRPALLRNYAYHYPYE-LDV 137
Query: 266 DAMHKAAQYLVGTHDFRNLC 285
DAM +A +Y +G +DF++ C
Sbjct: 138 DAMQRACEYFIGEYDFKSFC 157
>gi|15644322|ref|NP_229374.1| tRNA pseudouridine synthase ACD [Thermotoga maritima MSB8]
gi|418045633|ref|ZP_12683728.1| tRNA pseudouridine synthase A [Thermotoga maritima MSB8]
gi|8134772|sp|Q9X1R0.1|TRUA_THEMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|4982143|gb|AAD36641.1|AE001802_10 pseudouridylate synthase I [Thermotoga maritima MSB8]
gi|351676518|gb|EHA59671.1| tRNA pseudouridine synthase A [Thermotoga maritima MSB8]
Length = 245
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 18/76 (23%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDC-----------------LFRNYKYWFPQAGLDI 265
+N NLP D+ V VP + RFD R Y +WFP LD+
Sbjct: 80 MNANLPDDVYVKEVFEVPVNFHPRFDVTKRIYHYFILTSRQKNVFLRKYVWWFPYE-LDL 138
Query: 266 DAMHKAAQYLVGTHDF 281
DAM KA +YL GTHDF
Sbjct: 139 DAMRKAVKYLEGTHDF 154
>gi|210618029|ref|ZP_03291864.1| hypothetical protein CLONEX_04097 [Clostridium nexile DSM 1787]
gi|210149022|gb|EEA80031.1| hypothetical protein CLONEX_04097 [Clostridium nexile DSM 1787]
Length = 245
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 31/148 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARF-DCLFRNYKY----------------WFPQAGLDI 265
LN LP DI +V V E + R+ DC + Y+Y +F LD+
Sbjct: 79 LNQRLPEDIVIVKSEEVAEDFHPRYCDC-SKTYEYHILNMRIPIPTKRLTNYFVSYDLDV 137
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ---------FND 316
+ M KAA YL+G HDF + C NV V + R VT + + + +N
Sbjct: 138 EKMRKAAGYLIGEHDFVSFC--NVRTDVEDTVRTVTELEILKDGEEITIRISGNGFLYNM 195
Query: 317 IKEVVDSEPSFKKGQGNEKPEIIQQLVD 344
++ +V + + G+G +PE ++++++
Sbjct: 196 VRIIVGT--LIRVGRGFYEPEKVKEILE 221
>gi|148270348|ref|YP_001244808.1| tRNA pseudouridine synthase ACD [Thermotoga petrophila RKU-1]
gi|166229847|sp|A5IM09.1|TRUA_THEP1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|147735892|gb|ABQ47232.1| tRNA pseudouridine synthase A [Thermotoga petrophila RKU-1]
Length = 245
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 18/76 (23%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDC-----------------LFRNYKYWFPQAGLDI 265
+N NLP D+ V VP + RFD R Y +WFP LD+
Sbjct: 80 MNANLPDDVYVKEVFEVPVNFHPRFDVTKRIYHYFILTSRQKNVFLRKYVWWFPYE-LDL 138
Query: 266 DAMHKAAQYLVGTHDF 281
DAM KA +YL GTHDF
Sbjct: 139 DAMRKAVKYLEGTHDF 154
>gi|334142225|ref|YP_004535432.1| tRNA pseudouridine synthase A [Novosphingobium sp. PP1Y]
gi|333940256|emb|CCA93614.1| tRNA pseudouridine synthase A [Novosphingobium sp. PP1Y]
Length = 248
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 220 LKMLNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAG 262
++ +N L P I V+A VP+ + ARF C+ R Y Y W
Sbjct: 76 MEAINAKLRPDPIAVIACEEVPDDWHARFSCIGRAYIYRIVNRRAPLTLERGKAWQVAKP 135
Query: 263 LDIDAMHKAAQYLVGTHDF 281
LD AMH+AAQ+LVG HDF
Sbjct: 136 LDAQAMHRAAQFLVGRHDF 154
>gi|159466226|ref|XP_001691310.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279282|gb|EDP05043.1| predicted protein [Chlamydomonas reinhardtii]
Length = 311
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 22/125 (17%)
Query: 101 IKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGL----DTYAKRPMRTVF----- 151
I+EV +H + EL++R + D+ LAL ++G + L D++ R F
Sbjct: 42 IQEVCTAAHSYAELSHRTDMNICDLNLALGDMGTSMDDLRKYLDSWIAEQGRGTFDQGFV 101
Query: 152 ---PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPVVTLKIRSKLTSP 208
PP P P ++ P HIP +LP FPD H Y+RTP P
Sbjct: 102 HPLPPEYPIRAPGRTLPSWEERREEAPAHIPSWLPAFPDRHTYVRTPAF----------P 151
Query: 209 GEESD 213
G E D
Sbjct: 152 GHEED 156
>gi|148548973|ref|YP_001269075.1| tRNA pseudouridine synthase A [Pseudomonas putida F1]
gi|148513031|gb|ABQ79891.1| tRNA pseudouridine synthase A [Pseudomonas putida F1]
Length = 332
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------W 257
+E + N NLP DI VV P+P + ARF R Y+Y W
Sbjct: 135 DERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARRYRYVIYNDPIRPAHLAEEVTW 194
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDF 281
+ LD+D M +AAQ+L+GTHDF
Sbjct: 195 NHRP-LDVDRMAEAAQFLLGTHDF 217
>gi|323703515|ref|ZP_08115161.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM
574]
gi|323531506|gb|EGB21399.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM
574]
Length = 249
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 16/78 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDID 266
+N+ LP DI V+ VP + ARF + Y+Y + LDI+
Sbjct: 84 VNSLLPDDIAVIKAEEVPLDFHARFSATAKTYRYSIYNHRVMSPLHRLYAYHEPRPLDIE 143
Query: 267 AMHKAAQYLVGTHDFRNL 284
AM +AAQYL+GTHDF++
Sbjct: 144 AMRQAAQYLLGTHDFKSF 161
>gi|418315644|ref|ZP_12927101.1| tRNA pseudouridine synthase A, partial [Staphylococcus aureus
subsp. aureus 21340]
gi|365243084|gb|EHM83775.1| tRNA pseudouridine synthase A, partial [Staphylococcus aureus
subsp. aureus 21340]
Length = 266
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|21283867|ref|NP_646955.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MW2]
gi|49487001|ref|YP_044222.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297209968|ref|ZP_06926364.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300910980|ref|ZP_07128430.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus
TCH70]
gi|417900901|ref|ZP_12544779.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21266]
gi|418320244|ref|ZP_12931607.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VCU006]
gi|418645246|ref|ZP_13207373.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-55]
gi|418876074|ref|ZP_13430322.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418932523|ref|ZP_13486349.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418989250|ref|ZP_13536917.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1835]
gi|421149819|ref|ZP_15609476.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|443640549|ref|ZP_21124537.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus 21196]
gi|448742551|ref|ZP_21724491.1| tRNA pseudouridine synthase A [Staphylococcus aureus KT/314250]
gi|30913392|sp|Q8NVB7.1|TRUA_STAAW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|56749699|sp|Q6G7A2.1|TRUA_STAAS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|21205309|dbj|BAB96003.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MW2]
gi|49245444|emb|CAG43921.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus MSSA476]
gi|296885641|gb|EFH24578.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300887960|gb|EFK83155.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus
TCH70]
gi|341846670|gb|EGS87861.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21266]
gi|365227948|gb|EHM69135.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VCU006]
gi|375023600|gb|EHS17050.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-55]
gi|377715537|gb|EHT39726.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377767802|gb|EHT91588.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC93]
gi|377772697|gb|EHT96443.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC128]
gi|394329994|gb|EJE56091.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|443405070|gb|ELS63682.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus 21196]
gi|445546710|gb|ELY14996.1| tRNA pseudouridine synthase A [Staphylococcus aureus KT/314250]
Length = 267
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|163816114|ref|ZP_02207482.1| hypothetical protein COPEUT_02298 [Coprococcus eutactus ATCC 27759]
gi|158448534|gb|EDP25529.1| tRNA pseudouridine synthase A [Coprococcus eutactus ATCC 27759]
Length = 271
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 18/84 (21%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDC-----------------LFRNYKYWFPQAG-LD 264
LN LP DI + + +++ AR + RNY + PQ LD
Sbjct: 103 LNRYLPADICALDVTVAGDRFHARLNATGKIYEYTLYVGLEKPVFDRNYVWCVPQGSVLD 162
Query: 265 IDAMHKAAQYLVGTHDFRNLCKMN 288
+DAM KAA YLVG HDFR+ C N
Sbjct: 163 VDAMKKAASYLVGKHDFRSFCGNN 186
>gi|336430072|ref|ZP_08610028.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336001243|gb|EGN31388.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 256
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG-------- 262
++DD ++ +N+ LP DI V++ VPE++ +R + + Y+Y +
Sbjct: 78 DTDDTSEALMEKINSYLPEDIGVISVEEVPERFHSRLNAKSKTYRYRVLNSAVPHIFERR 137
Query: 263 --------LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD++AM +AA L G+HDF+ G
Sbjct: 138 YVYQVPEHLDMEAMRRAAILLTGSHDFKAFTSAKKG 173
>gi|340507598|gb|EGR33533.1| tRNA pseudouridine synthase a family protein, putative
[Ichthyophthirius multifiliis]
Length = 133
Score = 52.4 bits (124), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 22/116 (18%)
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFND--IKEV 320
+++D + +AA+ +G HDFRNLCK++V NF R + + VQ+ D +K+
Sbjct: 1 MNVDKIKEAAKLFIGEHDFRNLCKIDVLQ-TTNFIRTIHFINIDEINPGVQYQDSRMKQY 59
Query: 321 VDSEPS---------------FKKGQGNEKPEIIQQLVDIEKYPRIK----SAQFP 357
V + F G+G E I+ L+DI+KY R +++FP
Sbjct: 60 VATISGNAFLWHQIRNIMAVLFLIGKGQEDTSIVTDLLDIQKYSRKPNYEMASEFP 115
>gi|418563554|ref|ZP_13127990.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21262]
gi|371970792|gb|EHO88208.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21262]
Length = 267
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNIVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPEPLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|384548427|ref|YP_005737680.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ED133]
gi|298695476|gb|ADI98698.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ED133]
Length = 267
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRNPFQSGLKTFIPETLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|194017442|ref|ZP_03056053.1| tRNA pseudouridine synthase A [Bacillus pumilus ATCC 7061]
gi|194010714|gb|EDW20285.1| tRNA pseudouridine synthase A [Bacillus pumilus ATCC 7061]
Length = 247
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 18/83 (21%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------WFPQAGLDI 265
LN+ LP DI+V+ V E + ARF + + Y+Y FP LD
Sbjct: 80 LNSLLPDDIRVLKAEEVDESFHARFSVVSKEYRYKVSTETHQNVFTRQYACHFPYR-LDA 138
Query: 266 DAMHKAAQYLVGTHDFRNLCKMN 288
D M +AA +L+GTHDF + C N
Sbjct: 139 DKMREAAGHLIGTHDFTSFCAAN 161
>gi|418882181|ref|ZP_13436385.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377718090|gb|EHT42262.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1769]
Length = 267
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|282917564|ref|ZP_06325316.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
D139]
gi|283767311|ref|ZP_06340226.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
H19]
gi|282318526|gb|EFB48884.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
D139]
gi|283461190|gb|EFC08274.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
H19]
Length = 267
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|418599439|ref|ZP_13162922.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21343]
gi|374396755|gb|EHQ67980.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21343]
Length = 267
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|339006512|ref|ZP_08639087.1| tRNA pseudouridine synthase A [Brevibacillus laterosporus LMG
15441]
gi|338775721|gb|EGP35249.1| tRNA pseudouridine synthase A [Brevibacillus laterosporus LMG
15441]
Length = 246
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 222 MLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDI 265
+LNN LP I + V + ARFD + Y+Y W + LD+
Sbjct: 78 ILNNQLPNSIVIQTIEEVEPSFHARFDVREKEYRYCINNTQVPDIFRHRYAWHVRYPLDV 137
Query: 266 DAMHKAAQYLVGTHDFRNLC 285
+AM +AA +L+GTHDF + C
Sbjct: 138 EAMRQAATHLIGTHDFTSFC 157
>gi|386831791|ref|YP_006238445.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417800453|ref|ZP_12447572.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21310]
gi|418657441|ref|ZP_13219208.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-105]
gi|334270999|gb|EGL89394.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21310]
gi|375030605|gb|EHS23915.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-105]
gi|385197183|emb|CCG16829.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus HO 5096 0412]
Length = 267
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|160894208|ref|ZP_02074986.1| hypothetical protein CLOL250_01762 [Clostridium sp. L2-50]
gi|156864241|gb|EDO57672.1| tRNA pseudouridine synthase A [Clostridium sp. L2-50]
Length = 273
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 18/81 (22%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAG--LD 264
+N+ LP DI ++ +P E++ ARF+ ++Y+Y W G +D
Sbjct: 103 MNHYLPDDICILEVTPAAERFHARFNAKGKHYRYTIYRGRLKPVFDRKYVWTLDEGETID 162
Query: 265 IDAMHKAAQYLVGTHDFRNLC 285
+ M KAA YLVG HDF++ C
Sbjct: 163 CERMRKAAAYLVGEHDFKSFC 183
>gi|397693259|ref|YP_006531139.1| tRNA pseudouridine synthase A [Pseudomonas putida DOT-T1E]
gi|397329989|gb|AFO46348.1| tRNA pseudouridine synthase A [Pseudomonas putida DOT-T1E]
Length = 284
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------W 257
+E + N NLP DI VV P+P + ARF R Y+Y W
Sbjct: 87 DERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARRYRYVIYNDPIRPAHLAEEVTW 146
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDF 281
+ LD+D M +AAQ+L+GTHDF
Sbjct: 147 NHRP-LDVDRMAEAAQFLLGTHDF 169
>gi|333922481|ref|YP_004496061.1| tRNA pseudouridine synthase A [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333748042|gb|AEF93149.1| tRNA pseudouridine synthase A [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 249
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 16/78 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDID 266
+N+ LP DI V+ VP + ARF + Y+Y + LDI+
Sbjct: 84 VNSLLPDDIAVIKAEEVPLDFHARFSATAKTYRYSIYNHRVMSPLHRLYAYHEPRPLDIE 143
Query: 267 AMHKAAQYLVGTHDFRNL 284
AM +AAQYL+GTHDF++
Sbjct: 144 AMRQAAQYLLGTHDFKSF 161
>gi|417654925|ref|ZP_12304641.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21193]
gi|329730365|gb|EGG66755.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21193]
Length = 267
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|253729885|ref|ZP_04864050.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253726332|gb|EES95061.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
USA300_TCH959]
Length = 267
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|421522277|ref|ZP_15968919.1| tRNA pseudouridine synthase A [Pseudomonas putida LS46]
gi|402753896|gb|EJX14388.1| tRNA pseudouridine synthase A [Pseudomonas putida LS46]
Length = 284
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------W 257
+E + N NLP DI VV P+P + ARF R Y+Y W
Sbjct: 87 DERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARRYRYVIYNDPIRPAHLAEEVTW 146
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDF 281
+ LD+D M +AAQ+L+GTHDF
Sbjct: 147 NHRP-LDVDRMAEAAQFLLGTHDF 169
>gi|376296830|ref|YP_005168060.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans ND132]
gi|323459392|gb|EGB15257.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans ND132]
Length = 251
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 25/128 (19%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY--W------FPQ-------- 260
P+ + LN LPRD++V+ + VP+ + AR+ + + Y+Y W PQ
Sbjct: 75 FPWQRGLNGILPRDVRVLDAAEVPDDFHARYGAVSKTYEYCLWHERGFCLPQRRRFVWNC 134
Query: 261 AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVT----HAGVT---SAWQNVQ 313
+D M AA L+G HDF NVG V + R VT HAG T S W+
Sbjct: 135 GPVDFARMEAAAGLLLGEHDFAAF--QNVGTDVDSTVRTVTEISRHAGPTAHESVWRFTA 192
Query: 314 FNDIKEVV 321
+K++V
Sbjct: 193 DGFLKQMV 200
>gi|386013194|ref|YP_005931471.1| TruA [Pseudomonas putida BIRD-1]
gi|313499900|gb|ADR61266.1| TruA [Pseudomonas putida BIRD-1]
Length = 284
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------W 257
+E + N NLP DI VV P+P + ARF R Y+Y W
Sbjct: 87 DERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARRYRYVIYNDPIRPAHLAEEVTW 146
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDF 281
+ LD+D M +AAQ+L+GTHDF
Sbjct: 147 NHRP-LDVDRMAEAAQFLLGTHDF 169
>gi|302336349|ref|YP_003801556.1| tRNA pseudouridine synthase A [Olsenella uli DSM 7084]
gi|301320189|gb|ADK68676.1| tRNA pseudouridine synthase A [Olsenella uli DSM 7084]
Length = 284
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 18/79 (22%)
Query: 228 PRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQ--AGLDIDAMH 269
P D+ V +SARFD L R Y+Y W+ + A LD+DAM
Sbjct: 103 PDDLSVRGLYKADVSFSARFDALERGYRYRVACGSARPVLSWGHTWWLRSVADLDVDAMG 162
Query: 270 KAAQYLVGTHDFRNLCKMN 288
+AA L+G HDFR+ CK +
Sbjct: 163 EAASALLGEHDFRSFCKAS 181
>gi|15925209|ref|NP_372743.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927799|ref|NP_375332.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
N315]
gi|148268659|ref|YP_001247602.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
JH9]
gi|150394724|ref|YP_001317399.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
JH1]
gi|156980534|ref|YP_001442793.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
Mu3]
gi|253316980|ref|ZP_04840193.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|253734372|ref|ZP_04868537.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006999|ref|ZP_05145600.2| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257794565|ref|ZP_05643544.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9781]
gi|258408833|ref|ZP_05681117.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9763]
gi|258422432|ref|ZP_05685344.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9719]
gi|258439820|ref|ZP_05690566.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9299]
gi|258442624|ref|ZP_05691184.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8115]
gi|258446678|ref|ZP_05694833.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6300]
gi|258450204|ref|ZP_05698296.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6224]
gi|258455424|ref|ZP_05703384.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5937]
gi|269203852|ref|YP_003283121.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ED98]
gi|282893658|ref|ZP_06301890.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8117]
gi|282926765|ref|ZP_06334392.1| tRNA pseudouridine synthase A [Staphylococcus aureus A10102]
gi|295404895|ref|ZP_06814708.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8819]
gi|296275990|ref|ZP_06858497.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MR1]
gi|297243953|ref|ZP_06927843.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8796]
gi|384865401|ref|YP_005750760.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|386729925|ref|YP_006196308.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
71193]
gi|387151342|ref|YP_005742906.1| tRNA pseudouridine synthase A [Staphylococcus aureus 04-02981]
gi|387603503|ref|YP_005735024.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ST398]
gi|404479513|ref|YP_006710943.1| tRNA pseudouridine synthase [Staphylococcus aureus 08BA02176]
gi|415692928|ref|ZP_11454819.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CGS03]
gi|417652751|ref|ZP_12302489.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21172]
gi|417801788|ref|ZP_12448870.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21318]
gi|417893284|ref|ZP_12537319.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21201]
gi|417898958|ref|ZP_12542870.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21259]
gi|418310914|ref|ZP_12922445.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21331]
gi|418425383|ref|ZP_12998475.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS1]
gi|418428274|ref|ZP_13001261.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS2]
gi|418431159|ref|ZP_13004058.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418435066|ref|ZP_13006915.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS4]
gi|418437833|ref|ZP_13009608.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS5]
gi|418440765|ref|ZP_13012449.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS6]
gi|418443735|ref|ZP_13015320.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS7]
gi|418446734|ref|ZP_13018194.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS8]
gi|418449823|ref|ZP_13021192.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS9]
gi|418452657|ref|ZP_13023978.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS10]
gi|418455617|ref|ZP_13026865.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS11a]
gi|418458493|ref|ZP_13029681.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS11b]
gi|418568426|ref|ZP_13132772.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21272]
gi|418639981|ref|ZP_13202219.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-3]
gi|418653587|ref|ZP_13215525.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-99]
gi|418663065|ref|ZP_13224593.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-122]
gi|418876426|ref|ZP_13430668.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881907|ref|ZP_13436117.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884830|ref|ZP_13438986.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418892998|ref|ZP_13447103.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418912801|ref|ZP_13466775.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418918285|ref|ZP_13472234.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC348]
gi|418929662|ref|ZP_13483514.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418980670|ref|ZP_13528444.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
DR10]
gi|418989425|ref|ZP_13537089.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1096]
gi|419786222|ref|ZP_14311959.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus IS-M]
gi|424774939|ref|ZP_18201940.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CM05]
gi|443635866|ref|ZP_21119985.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus 21236]
gi|448745037|ref|ZP_21726912.1| tRNA pseudouridine synthase A [Staphylococcus aureus KT/Y21]
gi|54039782|sp|P65849.1|TRUA_STAAN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|54042087|sp|P65848.1|TRUA_STAAM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|166229841|sp|A7X5B5.1|TRUA_STAA1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|189029998|sp|A5IV03.1|TRUA_STAA9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|189030146|sp|A6U3U4.1|TRUA_STAA2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|13702019|dbj|BAB43311.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
N315]
gi|14247992|dbj|BAB58381.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
Mu50]
gi|147741728|gb|ABQ50026.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
JH9]
gi|149947176|gb|ABR53112.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
JH1]
gi|156722669|dbj|BAF79086.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
Mu3]
gi|253727689|gb|EES96418.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
TCH130]
gi|257788537|gb|EEV26877.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9781]
gi|257840516|gb|EEV64976.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9763]
gi|257841863|gb|EEV66300.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9719]
gi|257847596|gb|EEV71598.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9299]
gi|257851745|gb|EEV75679.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8115]
gi|257854746|gb|EEV77694.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6300]
gi|257856296|gb|EEV79205.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6224]
gi|257862635|gb|EEV85403.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5937]
gi|262076142|gb|ACY12115.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ED98]
gi|282591216|gb|EFB96289.1| tRNA pseudouridine synthase A [Staphylococcus aureus A10102]
gi|282763716|gb|EFC03844.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8117]
gi|283471441|emb|CAQ50652.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ST398]
gi|285817881|gb|ADC38368.1| tRNA pseudouridine synthase A [Staphylococcus aureus 04-02981]
gi|294969840|gb|EFG45858.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8819]
gi|297178731|gb|EFH37976.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8796]
gi|312830568|emb|CBX35410.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129701|gb|EFT85692.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CGS03]
gi|329723462|gb|EGG59991.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21172]
gi|334276049|gb|EGL94317.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21318]
gi|341846887|gb|EGS88075.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21259]
gi|341855480|gb|EGS96325.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21201]
gi|365235704|gb|EHM76615.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21331]
gi|371979655|gb|EHO96881.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21272]
gi|375015599|gb|EHS09246.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-3]
gi|375018775|gb|EHS12345.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-99]
gi|375035058|gb|EHS28197.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-122]
gi|377698743|gb|EHT23090.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377700845|gb|EHT25178.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377718662|gb|EHT42833.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377725876|gb|EHT49988.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377728772|gb|EHT52868.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377729531|gb|EHT53623.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377758844|gb|EHT82725.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377768571|gb|EHT92349.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC348]
gi|379991529|gb|EIA13000.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
DR10]
gi|383360868|gb|EID38254.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus IS-M]
gi|384231218|gb|AFH70465.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
71193]
gi|387715907|gb|EIK03973.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS2]
gi|387716399|gb|EIK04457.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387716946|gb|EIK04983.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS1]
gi|387723609|gb|EIK11342.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS4]
gi|387725005|gb|EIK12635.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS5]
gi|387728097|gb|EIK15596.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS6]
gi|387733046|gb|EIK20243.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS8]
gi|387734039|gb|EIK21195.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS7]
gi|387734366|gb|EIK21519.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS9]
gi|387741937|gb|EIK28761.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS10]
gi|387742512|gb|EIK29325.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS11a]
gi|387743719|gb|EIK30504.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS11b]
gi|402347041|gb|EJU82108.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CM05]
gi|404441002|gb|AFR74195.1| putative tRNA pseudouridine synthase [Staphylococcus aureus
08BA02176]
gi|408424148|emb|CCJ11559.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus ST228]
gi|408426137|emb|CCJ13524.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus ST228]
gi|408428125|emb|CCJ15488.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus ST228]
gi|408430114|emb|CCJ27279.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus ST228]
gi|408432101|emb|CCJ19416.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408434095|emb|CCJ21380.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408436088|emb|CCJ23348.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408438071|emb|CCJ25314.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ST228]
gi|443408682|gb|ELS67199.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus 21236]
gi|445561653|gb|ELY17845.1| tRNA pseudouridine synthase A [Staphylococcus aureus KT/Y21]
Length = 267
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|339486508|ref|YP_004701036.1| tRNA pseudouridine synthase A [Pseudomonas putida S16]
gi|338837351|gb|AEJ12156.1| tRNA pseudouridine synthase A [Pseudomonas putida S16]
Length = 284
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------W 257
+E + N NLP DI VV P+P + ARF R Y+Y W
Sbjct: 87 DERAWTMGTNFNLPHDISVVWARPMPADFHARFKACARRYRYVIYNDPIRPAHLAEEVTW 146
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDF 281
+ LD++ M +AAQYL+GTHDF
Sbjct: 147 NHRP-LDVERMAEAAQYLLGTHDF 169
>gi|91777254|ref|YP_552462.1| tRNA pseudouridine synthase A [Burkholderia xenovorans LB400]
gi|123167830|sp|Q13S27.1|TRUA_BURXL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|91689914|gb|ABE33112.1| tRNA pseudouridine synthase [Burkholderia xenovorans LB400]
Length = 270
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-------------- 256
E D ++ +++ N+ LP+ I V P+P+++ ARF R Y Y
Sbjct: 67 ELDRADVSWVRGTNSFLPKTISVQWAKPMPDEFHARFSAFERTYYYVLYVHPVRSPMLAA 126
Query: 257 ---WFPQAGLDIDAMHKAAQYLVGTHDF 281
W A LD+DAM AA +L+G HDF
Sbjct: 127 RAGWV-HAALDVDAMQAAAAHLIGEHDF 153
>gi|407278710|ref|ZP_11107180.1| tRNA pseudouridine synthase TruA [Rhodococcus sp. P14]
Length = 304
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 214 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA------------ 261
D+ ++ L LPRD++V S P + ARF + R+Y+Y A
Sbjct: 105 DDLARLVRRLARFLPRDVRVTGISVAPPHFDARFSAVRRHYEYRLTTAVYGAEPLRARDT 164
Query: 262 -----GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 295
+D+DAM A++ L+G HDF CK G V
Sbjct: 165 VAWPKPVDVDAMRAASRSLLGLHDFAAFCKRRDGATTVR 203
>gi|417796017|ref|ZP_12443234.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21305]
gi|334270430|gb|EGL88835.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21305]
Length = 267
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|282906560|ref|ZP_06314408.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282329459|gb|EFB58980.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
Btn1260]
Length = 264
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQQRDPFQSGLKTFIPEPLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|226309840|ref|YP_002769734.1| tRNA pseudouridine synthase A [Brevibacillus brevis NBRC 100599]
gi|254789606|sp|C0ZIL2.1|TRUA_BREBN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|226092788|dbj|BAH41230.1| tRNA pseudouridine synthase A [Brevibacillus brevis NBRC 100599]
Length = 244
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 31/148 (20%)
Query: 222 MLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW-------------------FPQAG 262
+LNN LP I + V + ARFD + Y+Y FP
Sbjct: 78 VLNNQLPDSIVIRTVEEVDASFHARFDVQVKEYRYCIDNNPVADVFRHRYADHVRFP--- 134
Query: 263 LDIDAMHKAAQYLVGTHDFRNLC--KMNVGNGV-----VNFKRLVTHAGVTSAWQNVQFN 315
LD+DAM +AA YLVG HDF + C K V + V ++ +++ VT +N
Sbjct: 135 LDVDAMQQAAHYLVGEHDFTSFCSAKTYVEDKVRTVYGLSVEKIGDEVWVTCRGNGFLYN 194
Query: 316 DIKEVVDSEPSFKKGQGNEKPEIIQQLV 343
++ +V + + GQG P +++++
Sbjct: 195 MVRIIVGT--LVEVGQGKRNPAELREIL 220
>gi|57640862|ref|YP_183340.1| tRNA pseudouridine synthase A [Thermococcus kodakarensis KOD1]
gi|62901178|sp|Q5JI92.1|TRUA_PYRKO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|57159186|dbj|BAD85116.1| tRNA pseudouridine synthase A [Thermococcus kodakarensis KOD1]
Length = 267
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 212 SDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKA 271
S+ +L ++LN++L D+ V+ + VP+ + RF F+ Y+Y+ G D+ AM +
Sbjct: 70 SERPDLARPEVLNHHLS-DVWVLGIAEVPDDFHPRFWAKFKTYRYYLVNEGFDLSAMREC 128
Query: 272 AQYLVGTHDFRNLCKMNVGN 291
A VG HDF K+ G
Sbjct: 129 ASLFVGRHDFSAFAKLEPGR 148
>gi|400535982|ref|ZP_10799518.1| tRNA pseudouridine synthase A [Mycobacterium colombiense CECT 3035]
gi|400331025|gb|EJO88522.1| tRNA pseudouridine synthase A [Mycobacterium colombiense CECT 3035]
Length = 252
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 17/87 (19%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA--------------- 261
LP L+ L LP D++VV + P + ARF L R+Y Y A
Sbjct: 61 LPLLRRLGRFLPTDVRVVGIARAPAGFDARFSALRRHYVYRLSTAPWGVQPLQARYVTAW 120
Query: 262 --GLDIDAMHKAAQYLVGTHDFRNLCK 286
LD++AM A++ L+G HDF C+
Sbjct: 121 PRPLDVEAMATASRDLLGLHDFAAFCR 147
>gi|398813206|ref|ZP_10571908.1| pseudouridylate synthase I [Brevibacillus sp. BC25]
gi|398039367|gb|EJL32505.1| pseudouridylate synthase I [Brevibacillus sp. BC25]
Length = 244
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 22/83 (26%)
Query: 222 MLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW-------------------FPQAG 262
+LNN LP I + V + ARFD + Y+Y FP
Sbjct: 78 VLNNQLPDSIVIRTVEEVDASFHARFDVQVKEYRYCIDNNPVADVFRHRYADHIRFP--- 134
Query: 263 LDIDAMHKAAQYLVGTHDFRNLC 285
LD+DAM +AA YLVG HDF + C
Sbjct: 135 LDVDAMQQAAHYLVGEHDFTSFC 157
>gi|379021884|ref|YP_005298546.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M013]
gi|418951403|ref|ZP_13503501.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-160]
gi|359831193|gb|AEV79171.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M013]
gi|375373071|gb|EHS76774.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-160]
Length = 267
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPEPLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|49484433|ref|YP_041657.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257423704|ref|ZP_05600133.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
55/2053]
gi|257426382|ref|ZP_05602784.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
65-1322]
gi|257429022|ref|ZP_05605409.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
68-397]
gi|257431668|ref|ZP_05608031.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
E1410]
gi|257434628|ref|ZP_05610679.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M876]
gi|282902120|ref|ZP_06310013.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
C160]
gi|282909528|ref|ZP_06317341.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911780|ref|ZP_06319576.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282915068|ref|ZP_06322845.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M899]
gi|282925699|ref|ZP_06333347.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
C101]
gi|283958992|ref|ZP_06376435.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293497472|ref|ZP_06665326.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
58-424]
gi|293511047|ref|ZP_06669744.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M809]
gi|293549653|ref|ZP_06672325.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M1015]
gi|295428801|ref|ZP_06821425.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297589714|ref|ZP_06948355.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus MN8]
gi|384866865|ref|YP_005747061.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
TCH60]
gi|415685160|ref|ZP_11450128.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CGS00]
gi|417888246|ref|ZP_12532360.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21195]
gi|418564180|ref|ZP_13128603.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21264]
gi|418580178|ref|ZP_13144264.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418595461|ref|ZP_13159073.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21342]
gi|418601892|ref|ZP_13165307.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21345]
gi|418890017|ref|ZP_13444143.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418895867|ref|ZP_13449946.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418898805|ref|ZP_13452869.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418907188|ref|ZP_13461206.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG149]
gi|418915344|ref|ZP_13469309.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418921085|ref|ZP_13475009.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418983165|ref|ZP_13530868.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418983994|ref|ZP_13531689.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1500]
gi|56749728|sp|Q6GEL6.1|TRUA_STAAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|49242562|emb|CAG41283.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus MRSA252]
gi|257272722|gb|EEV04824.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
55/2053]
gi|257276013|gb|EEV07464.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
65-1322]
gi|257279503|gb|EEV10090.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
68-397]
gi|257282547|gb|EEV12679.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
E1410]
gi|257285224|gb|EEV15340.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M876]
gi|282312528|gb|EFB42932.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
C101]
gi|282320789|gb|EFB51123.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M899]
gi|282323476|gb|EFB53792.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326638|gb|EFB56938.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282596579|gb|EFC01538.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
C160]
gi|283789551|gb|EFC28376.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290918700|gb|EFD95776.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M1015]
gi|291096403|gb|EFE26661.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
58-424]
gi|291466034|gb|EFF08563.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M809]
gi|295127150|gb|EFG56792.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297578225|gb|EFH96938.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus MN8]
gi|312437370|gb|ADQ76441.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
TCH60]
gi|315193148|gb|EFU23548.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CGS00]
gi|341856079|gb|EGS96922.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21195]
gi|371976888|gb|EHO94173.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21264]
gi|374397218|gb|EHQ68433.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21345]
gi|374401304|gb|EHQ72379.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21342]
gi|377702321|gb|EHT26644.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377707590|gb|EHT31882.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377709593|gb|EHT33845.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377713370|gb|EHT37578.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377737188|gb|EHT61198.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377739208|gb|EHT63214.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377753171|gb|EHT77088.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377760018|gb|EHT83897.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG149]
gi|377764458|gb|EHT88310.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 264
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQQRDPFQSGLKTFIPEPLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|402828551|ref|ZP_10877438.1| tRNA pseudouridine(38-40) synthase [Slackia sp. CM382]
gi|402286359|gb|EJU34834.1| tRNA pseudouridine(38-40) synthase [Slackia sp. CM382]
Length = 319
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 17/83 (20%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ-----------------AG 262
+K +N + I V P +SARFD R Y+Y+ A
Sbjct: 140 MKSMNALVDERITVTCAEERPAGFSARFDATSREYRYFIATGNARPVLIARSVWHLRGAP 199
Query: 263 LDIDAMHKAAQYLVGTHDFRNLC 285
LD+DAM+ AA+ LVG HDF++ C
Sbjct: 200 LDVDAMNAAARLLVGEHDFKSFC 222
>gi|359784763|ref|ZP_09287929.1| tRNA pseudouridine synthase A [Halomonas sp. GFAJ-1]
gi|359297908|gb|EHK62130.1| tRNA pseudouridine synthase A [Halomonas sp. GFAJ-1]
Length = 312
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 18/87 (20%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------W 257
+E ++ N NLPRD+ V PV + + +R L R Y+Y W
Sbjct: 84 SEKAWIFGTNTNLPRDVAVRWVKPVGDDFHSRLGALGRRYRYILLNQISRPVLERSNVTW 143
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDFRNL 284
+ LD DAMH+AAQ LVG HDF +
Sbjct: 144 C-RDPLDADAMHRAAQALVGEHDFSSF 169
>gi|282920794|ref|ZP_06328512.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
C427]
gi|282315209|gb|EFB45593.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
C427]
Length = 264
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQQRDPFQSGLKTFIPEPLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|150392126|ref|YP_001322175.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF]
gi|149951988|gb|ABR50516.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF]
Length = 255
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 31/150 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARF-----------------DCLFRNYKYWFPQAGLDI 265
LN LPRDI ++ +PE + AR+ L RNY Y P LD+
Sbjct: 79 LNGKLPRDITILEAKEMPEDFHARYSAIGKRYGYCIMNNTHGSALLRNYCYHVPYK-LDL 137
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVGNGV---------VNFKRLVTHAGVTSAWQNVQFND 316
M +A++ L+GTHDF+ M G+ V +NF + +T +
Sbjct: 138 QKMKQASETLLGTHDFKGF--MASGSQVKSTVRRIDEINFDTQGSQIWITMQGNGFLYKM 195
Query: 317 IKEVVDSEPSFKKGQGNEKPEIIQQLVDIE 346
++ +V S G G K E +Q +++ +
Sbjct: 196 VRIIVGSLVGI--GTGKIKEEALQNILETQ 223
>gi|431801485|ref|YP_007228388.1| tRNA pseudouridine synthase A [Pseudomonas putida HB3267]
gi|430792250|gb|AGA72445.1| tRNA pseudouridine synthase A [Pseudomonas putida HB3267]
Length = 284
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------W 257
+E + N NLP DI VV P+P + ARF R Y+Y W
Sbjct: 87 DERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARRYRYVIYNDPIRPAHLAEEVTW 146
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDF 281
+ LD++ M +AAQYL+GTHDF
Sbjct: 147 NHRP-LDVERMAEAAQYLLGTHDF 169
>gi|300710278|ref|YP_003736092.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3]
gi|448294604|ref|ZP_21484683.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3]
gi|299123961|gb|ADJ14300.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3]
gi|445586281|gb|ELY40563.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3]
Length = 266
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFR 282
N+ LP ++ A + P+ + AR+D R Y Y+ G D++A+ L GTHDF
Sbjct: 77 FNSELPGTVRAWASADAPDDFHARYDARSRTYAYYLHAPGADVEAIRGVLSRLSGTHDFH 136
Query: 283 NLC 285
NL
Sbjct: 137 NLT 139
>gi|268324810|emb|CBH38398.1| tRNA pseudouridine synthase A [uncultured archaeon]
Length = 275
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 221 KMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW-FPQAGLDIDAMHKAAQYLVGTH 279
+M+N LP DI +A + ++AR + + R Y+Y+ F Q LDI M A++ L+G H
Sbjct: 84 RMINTMLPNDIWALAIAKPHAGFNARKEAIRREYRYFLFLQTELDISRMRDASELLIGAH 143
Query: 280 DFRNLCK 286
DF N +
Sbjct: 144 DFSNFSQ 150
>gi|187921475|ref|YP_001890507.1| tRNA pseudouridine synthase A [Burkholderia phytofirmans PsJN]
gi|238691591|sp|B2T9N4.1|TRUA_BURPP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|187719913|gb|ACD21136.1| tRNA pseudouridine synthase A [Burkholderia phytofirmans PsJN]
Length = 270
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 27/117 (23%)
Query: 191 YIRTPVVTL---KIRSKLTSPGE------ESDDNELPYLKMLNNNLPRDIKVVAWSPVPE 241
+ RTPV T+ + + + G+ E D ++ +++ N+ LP+ I V P+P+
Sbjct: 38 FARTPVQTVVAGRTDTGVHGLGQVVHFDTELDRADVSWVRGTNSFLPKTISVQWAKPMPD 97
Query: 242 KYSARFDCLFRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDF 281
++ ARF R Y Y W LD+DAM KAA +L+G HDF
Sbjct: 98 EFHARFSAFERTYYYVLYVHPVRSPMLATRAGWV-HTSLDVDAMQKAAAHLLGEHDF 153
>gi|302388745|ref|YP_003824566.1| tRNA pseudouridine synthase A [Thermosediminibacter oceani DSM
16646]
gi|302199373|gb|ADL06943.1| tRNA pseudouridine synthase A [Thermosediminibacter oceani DSM
16646]
Length = 243
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 22/102 (21%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC-----------------LFRNYKYWFP 259
LPY +N+ LP DI V VP+ + AR+ L R Y Y+FP
Sbjct: 74 LPY--AINSKLPEDIAVKGAEAVPDDFHARYSAKAKVYTYSIYNAPFPSPLLRRYSYFFP 131
Query: 260 QAGLDIDAMHKAAQYLVGTHDFRNL--CKMNVGNGVVNFKRL 299
LD++AM +AA+ +G HDF +V V N RL
Sbjct: 132 LP-LDVEAMRRAAKAFIGVHDFAAFRASGSSVKTSVRNITRL 172
>gi|296268583|ref|YP_003651215.1| tRNA pseudouridine synthase A [Thermobispora bispora DSM 43833]
gi|296091370|gb|ADG87322.1| tRNA pseudouridine synthase A [Thermobispora bispora DSM 43833]
Length = 294
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 24/128 (18%)
Query: 191 YIRTPVVTLKI-----RSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
++ P+ L I R T P E + ++ L LP D++V A S P+ + A
Sbjct: 69 HVDLPLAALAILEPRGRETATPPAERLPELCSALVRRLAAVLPPDVRVFAVSVPPDGFDA 128
Query: 246 RFDCLFRNYKY------------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKM 287
RF L R Y Y W+P+ LD++ M+ A+ L+G HDF CK
Sbjct: 129 RFSALCRRYCYRVCDAPGGVDPLRRREVLWYPKP-LDVELMNAASVRLLGEHDFAAFCKK 187
Query: 288 NVGNGVVN 295
G +
Sbjct: 188 REGATTIR 195
>gi|227876165|ref|ZP_03994281.1| tRNA-pseudouridine synthase I [Mobiluncus mulieris ATCC 35243]
gi|306819440|ref|ZP_07453147.1| tRNA pseudouridine synthase A [Mobiluncus mulieris ATCC 35239]
gi|227843126|gb|EEJ53319.1| tRNA-pseudouridine synthase I [Mobiluncus mulieris ATCC 35243]
gi|304647732|gb|EFM45050.1| tRNA pseudouridine synthase A [Mobiluncus mulieris ATCC 35239]
Length = 326
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 22/102 (21%)
Query: 206 TSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY--------- 256
T PG DD + Y N I V A PVP+ + ARF L R+Y+Y
Sbjct: 126 TIPGLNLDDQPI-YPPEANGA----IVVTAARPVPDAFDARFSALARHYEYLVIDEPTAR 180
Query: 257 --------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W+ A L++ MH+A+ L+GTHDF CK G
Sbjct: 181 NPLTRNTCWWYGAPLNVARMHEASAGLLGTHDFAAFCKPREG 222
>gi|258651414|ref|YP_003200570.1| tRNA pseudouridine synthase A [Nakamurella multipartita DSM 44233]
gi|258554639|gb|ACV77581.1| tRNA pseudouridine synthase A [Nakamurella multipartita DSM 44233]
Length = 305
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 19/96 (19%)
Query: 228 PRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA-----------------GLDIDAMHK 270
P D++V A PE + ARF L R Y+Y A LD++AM
Sbjct: 126 PPDVRVRAVLAAPEGFDARFSALRRRYRYRIGTAEWGVEPADRRFVYARRRTLDVEAMTL 185
Query: 271 AAQYLVGTHDFRNLCKMNVGNGVV-NFKRL-VTHAG 304
AAQ LVG HDF C+ G + + ++L VT AG
Sbjct: 186 AAQALVGLHDFHAFCRPREGATTIRDLQKLTVTRAG 221
>gi|374709914|ref|ZP_09714348.1| tRNA pseudouridine synthase A [Sporolactobacillus inulinus CASD]
Length = 246
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 221 KMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY---------WFPQAG-------LD 264
+ LN+ LP DI V VPE + AR+D + Y+Y F +A LD
Sbjct: 78 RALNSLLPGDIYVRHAEAVPETFHARYDVKQKEYRYRLLTRPEPDLFRRAYTAHVAQPLD 137
Query: 265 IDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT 306
++AM++AA+ ++GTHDF C N V + R V H V+
Sbjct: 138 LEAMNQAAEAIIGTHDFSCFCAAN--TDVKDKVRTVFHLSVS 177
>gi|417903640|ref|ZP_12547478.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21269]
gi|341849286|gb|EGS90432.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21269]
Length = 267
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPEPLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|407982528|ref|ZP_11163204.1| tRNA pseudouridine(38-40) synthase [Mycobacterium hassiacum DSM
44199]
gi|407376040|gb|EKF24980.1| tRNA pseudouridine(38-40) synthase [Mycobacterium hassiacum DSM
44199]
Length = 291
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 32/129 (24%)
Query: 189 HAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 248
HAY RTP PG D P ++ L LP D++V+ + + ARF
Sbjct: 84 HAYPRTP-----------RPG---DGEFTPLVRRLARFLPGDVRVLDIARAAPGFDARFS 129
Query: 249 CLFRNYKYWF--------PQAG---------LDIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
L R+Y Y PQ LD++AM A++L+G HDF C+ G
Sbjct: 130 ALRRHYAYRLSTAPYGVEPQEARYVTAWPRPLDVEAMSAGARHLIGLHDFAAFCRHREGA 189
Query: 292 GVV-NFKRL 299
+ + +RL
Sbjct: 190 TTIRDLQRL 198
>gi|421875306|ref|ZP_16306900.1| tRNA pseudouridine synthase A [Brevibacillus laterosporus GI-9]
gi|372455774|emb|CCF16449.1| tRNA pseudouridine synthase A [Brevibacillus laterosporus GI-9]
Length = 250
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 222 MLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDI 265
+LNN LP I + V + ARFD + Y+Y W + LD+
Sbjct: 82 ILNNQLPDSIVIQTIEEVEPSFHARFDVREKEYRYCINNTQVPDIFRHRYAWHVRYPLDV 141
Query: 266 DAMHKAAQYLVGTHDFRNLC 285
+AM +AA +L+GTHDF + C
Sbjct: 142 EAMRQAATHLIGTHDFTSFC 161
>gi|239636202|ref|ZP_04677206.1| tRNA pseudouridine synthase A [Staphylococcus warneri L37603]
gi|239598218|gb|EEQ80711.1| tRNA pseudouridine synthase A [Staphylococcus warneri L37603]
Length = 267
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA----------------GLDID 266
+N+ LP DI V + V E + R+DC+ + Y+Y QA LD++
Sbjct: 78 MNSALPDDIYVKSVKQVDEDFHCRYDCVGKRYRYKVYQAKHRDPFQSGLKTYIADSLDLN 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AA+ +GTHDF C
Sbjct: 138 QMNEAAKLFIGTHDFTGFC 156
>gi|169347102|ref|ZP_02866044.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
gi|169296785|gb|EDS78914.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
Length = 244
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 29/147 (19%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDID 266
LN+ LP+DI ++ V E + AR+ + Y Y + + LD++
Sbjct: 79 LNSKLPKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNREEPPALERNCVYHVKKQLDVE 138
Query: 267 AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ---------FNDI 317
+M +A +Y +G HDF+ G V R +T + + ++ +N +
Sbjct: 139 SMKEACKYFLGKHDFKAF--QRPGGTVKTSVRTITDIHIETEGNKIKIYVSADGFLYNMV 196
Query: 318 KEVVDSEPSFKKGQGNEKPEIIQQLVD 344
+ +V + K G+G EKPE I++++D
Sbjct: 197 RLIVGT--LLKVGRGKEKPEYIKEVID 221
>gi|407716341|ref|YP_006837621.1| tRNA pseudouridine synthase A [Cycloclasticus sp. P1]
gi|407256677|gb|AFT67118.1| tRNA pseudouridine synthase A [Cycloclasticus sp. P1]
Length = 269
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 210 EESDDNEL-PYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----WFPQA-- 261
E S EL ++ N NLP DI+VV PV E + ARF R Y+Y W A
Sbjct: 66 ETSKQRELHQWVFGTNANLPDDIRVVWIKPVTEDFHARFSAAARYYRYEILNRWVKSALS 125
Query: 262 ---------GLDIDAMHKAAQYLVGTHDFRNL 284
LD + M K A YL+GTHDF +
Sbjct: 126 RHHVTTIFNPLDENLMQKGANYLLGTHDFTSF 157
>gi|398844100|ref|ZP_10601204.1| pseudouridylate synthase I [Pseudomonas sp. GM84]
gi|398254905|gb|EJN39958.1| pseudouridylate synthase I [Pseudomonas sp. GM84]
Length = 286
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------W 257
+E + N NLP DI VV P+P + ARF R Y+Y W
Sbjct: 89 DERAWTLGTNFNLPHDISVVWSRPMPADFHARFKACARRYRYVIYNDPIRPAHLAEEVTW 148
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDF 281
+ LD++ M +AAQYL+GTHDF
Sbjct: 149 NHRP-LDVERMAEAAQYLLGTHDF 171
>gi|325282723|ref|YP_004255264.1| tRNA pseudouridine synthase A [Deinococcus proteolyticus MRP]
gi|324314532|gb|ADY25647.1| tRNA pseudouridine synthase A [Deinococcus proteolyticus MRP]
Length = 294
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 56/151 (37%), Gaps = 37/151 (24%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------WFPQAGLDI 265
L LPR + V++ P + ARF C R Y Y W + LD+
Sbjct: 109 LARQLPRSVAVLSAQAAPAGFHARFSCTQRRYLYQILNAPARHPLEEGRSLWV-RGQLDL 167
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEP 325
AM+ AAQ+L+G HDF V +RL A Q V + E
Sbjct: 168 SAMNAAAQHLIGLHDFAAFATKEDRQTVRELQRLAVTASPLPYGQRVTLAVVGE------ 221
Query: 326 SFKK-------------GQGNEKPEIIQQLV 343
SF + GQG PE + +++
Sbjct: 222 SFLRHMVRGLVGTLIAVGQGKLAPEAVAEIL 252
>gi|422698342|ref|ZP_16756255.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1346]
gi|315173151|gb|EFU17168.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1346]
Length = 877
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 27/118 (22%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D + R V K S LT+ L LN LP DI V + +PE++ AR
Sbjct: 684 DAGTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHAR 734
Query: 247 FDCLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKM 287
++ + Y Y+ FP+A LD + M +A Q L+GTHDF +
Sbjct: 735 YNATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDFIGFSAL 791
>gi|295093425|emb|CBK82516.1| pseudouridylate synthase I [Coprococcus sp. ART55/1]
Length = 247
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 19/120 (15%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
D H RT + R+ + + E+D LN LP DI + + +++ AR
Sbjct: 44 DIHGAGRTDA-GVHARAMVANGRLETDKTPEEIKDYLNRYLPADICALDVAVAGDRFHAR 102
Query: 247 FDC-----------------LFRNYKYWFPQ-AGLDIDAMHKAAQYLVGTHDFRNLCKMN 288
+ RNY + PQ + LD+D M KAA YLVG HDFR+ C N
Sbjct: 103 LNATGKVYEYTLYVGAEKPVFDRNYVWCVPQGSALDVDVMKKAASYLVGKHDFRSFCGNN 162
>gi|291528184|emb|CBK93770.1| pseudouridylate synthase I [Eubacterium rectale M104/1]
Length = 254
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 18/80 (22%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARF-----------------DCLFRNYKYWFPQAGLDI 265
LN +LP DI V S VP+++ AR+ D R Y Y + + LD
Sbjct: 84 LNEHLPADIAVTDISNVPDRFHARYNAVSKTYVYTIHTGIVSDVFRRKYVYDYDKP-LDT 142
Query: 266 DAMHKAAQYLVGTHDFRNLC 285
D M KAA YL+G HDF+ C
Sbjct: 143 DRMKKAAAYLLGEHDFKAFC 162
>gi|95928687|ref|ZP_01311433.1| tRNA pseudouridine synthase A [Desulfuromonas acetoxidans DSM 684]
gi|95135032|gb|EAT16685.1| tRNA pseudouridine synthase A [Desulfuromonas acetoxidans DSM 684]
Length = 251
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 218 PYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQA 261
Y + +N LP+DI V V + + ARFD + Y+Y W
Sbjct: 74 AYREGVNRFLPQDIVVRQVCRVADDFHARFDAQGKWYRYRLYRGRIRSPLHRLTSWHVAG 133
Query: 262 GLDIDAMHKAAQYLVGTHDF 281
GLD++AM +AA LVGTHDF
Sbjct: 134 GLDVEAMTQAADALVGTHDF 153
>gi|260893342|ref|YP_003239439.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4]
gi|260865483|gb|ACX52589.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4]
Length = 259
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 18/94 (19%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
LN LP D+ V+A + VPE++ R+D + + Y+Y F + LD++
Sbjct: 81 LNGLLPPDVAVLAAAEVPEQFHPRYDAVSKVYRYTFFRRAVRCPLTRFYALHVPEPLDVE 140
Query: 267 AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLV 300
M +AA YL G HDFR N G V + R V
Sbjct: 141 RMREAAAYLGGRHDFRAF--QNTGRPVKSSVRTV 172
>gi|338998566|ref|ZP_08637238.1| tRNA pseudouridine synthase A [Halomonas sp. TD01]
gi|338764483|gb|EGP19443.1| tRNA pseudouridine synthase A [Halomonas sp. TD01]
Length = 312
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------W 257
+E ++ N NLPRD+ V PV + + +R L R Y+Y W
Sbjct: 84 SEKAWIFGSNTNLPRDVAVRWVKPVSDDFHSRLGALGRRYRYILLNQISRPVLERHNVTW 143
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDF 281
+ LD DAMH+AAQ LVG HDF
Sbjct: 144 C-RDPLDADAMHRAAQALVGEHDF 166
>gi|384514984|ref|YP_005710076.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans 809]
gi|334696185|gb|AEG80982.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans 809]
Length = 291
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF---PQAGL------------- 263
++ L LP D++V A + PE + ARF L R+Y Y P+ L
Sbjct: 92 VRRLARLLPEDVRVHACTRAPEGFDARFSALRRHYVYRLTTHPRGALPTRATDTAHWPKQ 151
Query: 264 -DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 295
D++AM AA L+G HDF CK G +
Sbjct: 152 IDMNAMQAAADVLIGLHDFAAFCKYREGATTIR 184
>gi|288554758|ref|YP_003426693.1| tRNA pseudouridine synthase A [Bacillus pseudofirmus OF4]
gi|288545918|gb|ADC49801.1| tRNA pseudouridine synthase A [Bacillus pseudofirmus OF4]
Length = 247
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 16/84 (19%)
Query: 221 KMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA----------------GLD 264
K LN LP DI+V++ + + AR+ + Y+Y A LD
Sbjct: 78 KALNACLPDDIRVLSAHYAEKDFHARYHTTGKEYRYRVLNAEDPDVFRRHHTAHVLYALD 137
Query: 265 IDAMHKAAQYLVGTHDFRNLCKMN 288
ID M +AA YL+GTHDF C N
Sbjct: 138 IDKMRQAAAYLIGTHDFSAFCAAN 161
>gi|399055838|ref|ZP_10743488.1| pseudouridylate synthase I [Brevibacillus sp. CF112]
gi|433543260|ref|ZP_20499670.1| tRNA pseudouridine synthase A [Brevibacillus agri BAB-2500]
gi|398046701|gb|EJL39295.1| pseudouridylate synthase I [Brevibacillus sp. CF112]
gi|432185389|gb|ELK42880.1| tRNA pseudouridine synthase A [Brevibacillus agri BAB-2500]
Length = 244
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 31/148 (20%)
Query: 222 MLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW-------------------FPQAG 262
+LNN LP I + + V E + ARFD + Y+Y FP
Sbjct: 78 VLNNQLPDAIVIRSVEEVAESFHARFDVRVKEYRYCIDNNPVADVFRHRYADHIRFP--- 134
Query: 263 LDIDAMHKAAQYLVGTHDFRNLC--KMNVGNGVVNFKRLVTHAGVTSAWQNVQ-----FN 315
LD++AM +AA++LVG HDF + C K V + V L W + +N
Sbjct: 135 LDVEAMQQAARHLVGEHDFTSFCSAKTFVEDKVRTVYSLTVERSGGEVWVTCRGNGFLYN 194
Query: 316 DIKEVVDSEPSFKKGQGNEKPEIIQQLV 343
++ +V + + GQG P+ +++++
Sbjct: 195 MVRIIVGT--LVEVGQGKRHPDELKKIL 220
>gi|402823210|ref|ZP_10872647.1| tRNA pseudouridine synthase A [Sphingomonas sp. LH128]
gi|402263273|gb|EJU13199.1| tRNA pseudouridine synthase A [Sphingomonas sp. LH128]
Length = 248
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 220 LKMLNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAG 262
L LN+ L P I V++ VP+ + ARF C+ R Y Y W
Sbjct: 76 LGALNDRLRPHPIAVLSCEVVPDDWHARFSCVGRAYIYRIANRRAPLTLEKGKAWMVPKP 135
Query: 263 LDIDAMHKAAQYLVGTHDF 281
LD +AMH+AAQ LVG HDF
Sbjct: 136 LDAEAMHRAAQILVGLHDF 154
>gi|260776454|ref|ZP_05885349.1| tRNA pseudouridine synthase A [Vibrio coralliilyticus ATCC BAA-450]
gi|260607677|gb|EEX33942.1| tRNA pseudouridine synthase A [Vibrio coralliilyticus ATCC BAA-450]
Length = 264
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 49/159 (30%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N NLP DI V VPE++ ARF R Y+Y + LD +
Sbjct: 78 VNANLPNDIAVRWAKEVPEEFHARFSATARRYRYIIFNSAFRPGIMSSGVSHYHGELDAE 137
Query: 267 AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKE-----VV 321
MH+A QYL+G +DF +F+ H S W+N+ D+ V+
Sbjct: 138 KMHQAGQYLLGENDF------------TSFR--AVHCQSRSPWRNIMHLDVTRHGQYVVI 183
Query: 322 DSEPS--------------FKKGQGNEKPEIIQQLVDIE 346
D + + G+G +KPE I+ L++++
Sbjct: 184 DIKANAFVHHMVRNITGSLICVGRGEQKPEWIKWLLEVK 222
>gi|182677494|ref|YP_001831640.1| tRNA pseudouridine synthase A [Beijerinckia indica subsp. indica
ATCC 9039]
gi|238691224|sp|B2IEW0.1|TRUA_BEII9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|182633377|gb|ACB94151.1| tRNA pseudouridine synthase A [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 260
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 17/76 (22%)
Query: 223 LNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDI 265
LN ++ P + VVA PVPE + ARF + R+Y Y W + LD
Sbjct: 79 LNAHMRPALVAVVAAEPVPETFDARFSAIRRHYLYRIINRRAPLTFEAGRAWLVKRRLDA 138
Query: 266 DAMHKAAQYLVGTHDF 281
AMH+AAQ L G HDF
Sbjct: 139 RAMHEAAQVLTGRHDF 154
>gi|416840583|ref|ZP_11903830.1| tRNA pseudouridine synthase A [Staphylococcus aureus O11]
gi|416846707|ref|ZP_11906696.1| tRNA pseudouridine synthase A [Staphylococcus aureus O46]
gi|323440101|gb|EGA97816.1| tRNA pseudouridine synthase A [Staphylococcus aureus O11]
gi|323442775|gb|EGB00401.1| tRNA pseudouridine synthase A [Staphylococcus aureus O46]
Length = 267
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M +AAQ +GTHDF C
Sbjct: 138 KMKRAAQQFIGTHDFTGFC 156
>gi|440299523|gb|ELP92075.1| hypothetical protein EIN_379420 [Entamoeba invadens IP1]
Length = 199
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 92 AVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF 151
A+ ++ + I+E+G +H+ E R Q D+L A+ +LG+ + Y R +
Sbjct: 35 ALVDIMEMYIQEIGKRTHEISEHNGRTQSTFIDMLFAMEQLGVDVFSFGEYVTREDKLFI 94
Query: 152 P--PVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
P P + +P L K+ P+IP +LP PDP Y T +
Sbjct: 95 DGIPEFPVVKQRPNVPLSEVDKE--RPYIPGFLPELPDPRTYKSTAI 139
>gi|82751809|ref|YP_417550.1| tRNA pseudouridine synthase A [Staphylococcus aureus RF122]
gi|123727496|sp|Q2YYM7.1|TRUA_STAAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|82657340|emb|CAI81781.1| tRNA pseudouridine synthase A [Staphylococcus aureus RF122]
Length = 267
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPVDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQRGLKTFIPEPLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|238923689|ref|YP_002937205.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656]
gi|238875364|gb|ACR75071.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656]
Length = 276
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 18/80 (22%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARF-----------------DCLFRNYKYWFPQAGLDI 265
LN +LP DI V S VP+++ AR+ D R Y Y + + LD
Sbjct: 106 LNEHLPADIAVTDISNVPDRFHARYNAVSKTYVYTIHTGIVSDVFRRKYVYDYDKP-LDT 164
Query: 266 DAMHKAAQYLVGTHDFRNLC 285
D M KAA YL+G HDF+ C
Sbjct: 165 DRMKKAAAYLLGEHDFKAFC 184
>gi|117925388|ref|YP_866005.1| tRNA pseudouridine synthase A [Magnetococcus marinus MC-1]
gi|117609144|gb|ABK44599.1| tRNA pseudouridine synthase A [Magnetococcus marinus MC-1]
Length = 270
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 17/109 (15%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAG 262
YL++LN P I V+A PV E + AR+D +R Y Y W
Sbjct: 86 YLRILNVRTPHSIAVLACQPVAESFHARYDAYYRQYLYRINTRKIPPALERSRVWHYPYL 145
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMNV-GNGVVNFKRLVTHAGVTSAWQ 310
LD + + +A+ L+GTHDF + V F RL+ WQ
Sbjct: 146 LDAERLAEASALLLGTHDFSSFRAAGCQSKSPVKFMRLIQWQQRGDEWQ 194
>gi|379796541|ref|YP_005326542.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356873534|emb|CCE59873.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 267
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ ++Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVKNVDTVDDDFHCRYDCVGKHYRYKVYQAQHRDPFQSGLKTFIPETLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AA +GTHDF C
Sbjct: 138 KMNRAAHQFIGTHDFTGFC 156
>gi|328955882|ref|YP_004373215.1| tRNA pseudouridine synthase A [Coriobacterium glomerans PW2]
gi|328456206|gb|AEB07400.1| tRNA pseudouridine synthase A [Coriobacterium glomerans PW2]
Length = 299
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 19/104 (18%)
Query: 216 ELP---YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY---------------- 256
E+P +L+ ++ LP DI V +SARFD R Y Y
Sbjct: 110 EIPRARWLRAMDALLPPDISVAGVFRARRGFSARFDARDRTYTYRIAAGSVRPALIRPYV 169
Query: 257 WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLV 300
W+ + LD AM AA LVG HDF++ C+ + G +R++
Sbjct: 170 WWHRLELDEGAMRDAATCLVGEHDFKSFCRASSAAGRPTSRRVL 213
>gi|402836470|ref|ZP_10885006.1| tRNA pseudouridine(38-40) synthase [Mogibacterium sp. CM50]
gi|402270946|gb|EJU20202.1| tRNA pseudouridine(38-40) synthase [Mogibacterium sp. CM50]
Length = 282
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 27/95 (28%)
Query: 214 DNELPYLKMLN-------------NNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ 260
DN LP K+ N + LP DI+V++ VP + ARF C + YKY +
Sbjct: 83 DNPLPTNKLANIMNRRFGAGGLGRSGLPGDIRVISAVEVPSDFHARFSCHGKTYKYVVDR 142
Query: 261 AG--------------LDIDAMHKAAQYLVGTHDF 281
+G LD +AM AA+ VGTHDF
Sbjct: 143 SGDIFERNYVYQYGYELDHEAMRVAAKAAVGTHDF 177
>gi|111220576|ref|YP_711370.1| tRNA pseudouridine synthase A [Frankia alni ACN14a]
gi|111148108|emb|CAJ59776.1| tRNA pseudouridine synthase A (Pseudouridylate synthase I)
(Pseudouridine synthase I) (Uracil hydrolyase) [Frankia
alni ACN14a]
Length = 288
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 221 KMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA-----------------GL 263
+ LN L R ++V +P P + ARF L R Y Y A L
Sbjct: 96 RRLNGVLDRSVRVTGLAPAPAGFDARFSALSRRYVYRITDAPFGAEPLRRFDTLAWPRPL 155
Query: 264 DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 295
D+ AM AA LVG HDF C+ G V
Sbjct: 156 DVPAMASAALLLVGEHDFAAFCRRREGATTVR 187
>gi|357974115|ref|ZP_09138086.1| tRNA pseudouridine synthase A [Sphingomonas sp. KC8]
Length = 247
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 22/90 (24%)
Query: 214 DNELPY-----LKMLNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYKY----------- 256
D E P+ ++ LN +L P+ I ++A V + + ARF CL R Y Y
Sbjct: 65 DVERPFQPFRLMEALNAHLRPQPIAILACEIVADDWHARFSCLGRRYSYRIINRRAPLAL 124
Query: 257 -----WFPQAGLDIDAMHKAAQYLVGTHDF 281
W A LD +AMH AAQ LVG HDF
Sbjct: 125 DAGRAWQVAAPLDAEAMHAAAQRLVGLHDF 154
>gi|303237649|ref|ZP_07324209.1| tRNA pseudouridine synthase A [Prevotella disiens FB035-09AN]
gi|302482101|gb|EFL45136.1| tRNA pseudouridine synthase A [Prevotella disiens FB035-09AN]
Length = 255
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 213 DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW-------FPQA---- 261
D +L Y LN LPRD+ V++ V + ARF R Y Y+ F +A
Sbjct: 71 DGQQLAY--KLNRMLPRDVSVISVEAVENELHARFSATSRTYHYYMHRGRNPFSRAYSYE 128
Query: 262 ---GLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
LD + M++AA+YL+G DF+ CK N
Sbjct: 129 MPYELDFERMNEAAKYLIGERDFKCFCKAGGDN 161
>gi|397653243|ref|YP_006493926.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans 0102]
gi|393402199|dbj|BAM26691.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans 0102]
Length = 291
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF---PQAGL------------- 263
++ L LP D++V A + PE + ARF L R+Y Y P+ L
Sbjct: 92 VRRLARLLPEDVRVHACTRAPEGFDARFSALRRHYVYRLTTHPRGALPTRATDTAHWPKQ 151
Query: 264 -DIDAMHKAAQYLVGTHDFRNLCKMNVG 290
D++AM AA L+G HDF CK G
Sbjct: 152 IDMNAMQAAADVLIGLHDFAAFCKYREG 179
>gi|393771426|ref|ZP_10359898.1| tRNA pseudouridine synthase A [Novosphingobium sp. Rr 2-17]
gi|392723190|gb|EIZ80583.1| tRNA pseudouridine synthase A [Novosphingobium sp. Rr 2-17]
Length = 249
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 50/112 (44%), Gaps = 22/112 (19%)
Query: 189 HAYIRT--PVVTLKIRSKLTSPGEESDDNELPYLKMLNNNL-PRDIKVVAWSPVPEKYSA 245
HA RT V L +R L SP S +++ LN L P I + VPE + A
Sbjct: 46 HAAGRTDAGVHALGMRVHLDSPKPLS---PFRFMEALNARLRPNPIAALDCVEVPEDWHA 102
Query: 246 RFDCLFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDF 281
RF C R+Y Y W LD DAMH+AAQ LVG HDF
Sbjct: 103 RFLCSGRSYLYRIINRRAPLTLEHGRAWHVIRPLDADAMHRAAQALVGMHDF 154
>gi|333907974|ref|YP_004481560.1| tRNA pseudouridine synthase A [Marinomonas posidonica IVIA-Po-181]
gi|333477980|gb|AEF54641.1| tRNA pseudouridine synthase A [Marinomonas posidonica IVIA-Po-181]
Length = 274
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 20/98 (20%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA--------- 261
+++ +E + +N LP DI VVA V + + ARF L R Y+Y QA
Sbjct: 69 QAERSERAWTLGVNTYLPDDISVVAARHVDDDFHARFSALSRRYRYVIYQADFCPAILVK 128
Query: 262 -------GLDIDAMHKAAQYLVGTHDFRNL----CKMN 288
LD++ M +AA+ +GTHDF + C+ N
Sbjct: 129 GVTWTYKSLDVNVMRQAAKTFIGTHDFSSFRAVGCQAN 166
>gi|225026395|ref|ZP_03715587.1| hypothetical protein EUBHAL_00644 [Eubacterium hallii DSM 3353]
gi|224956284|gb|EEG37493.1| tRNA pseudouridine synthase A [Eubacterium hallii DSM 3353]
Length = 256
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
LN LP DI++V+ VP + R+ + Y+Y L+I
Sbjct: 82 LNPQLPEDIRIVSSEQVPGDFHPRYCDTRKTYEYHIQNGKIPLPTERLYSHLVIFPLNIQ 141
Query: 267 AMHKAAQYLVGTHDFRNLC 285
AM +A+QYLVGTHDF++ C
Sbjct: 142 AMQEASQYLVGTHDFKSFC 160
>gi|223984957|ref|ZP_03635058.1| hypothetical protein HOLDEFILI_02362 [Holdemania filiformis DSM
12042]
gi|223963077|gb|EEF67488.1| hypothetical protein HOLDEFILI_02362 [Holdemania filiformis DSM
12042]
Length = 268
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 17/87 (19%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG------------ 262
N + + +N +LP+DI + + V ++ ARFD + + Y+Y Q G
Sbjct: 74 NAFQWKRAINGHLPKDIHIRSVEAVDSRFHARFDAIGKRYEYRI-QLGEANVFTRRYAFQ 132
Query: 263 ----LDIDAMHKAAQYLVGTHDFRNLC 285
L++ AM + A YL+G HDF + C
Sbjct: 133 SPWTLNVQAMREGAAYLIGEHDFSSFC 159
>gi|110802389|ref|YP_699630.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
gi|110682890|gb|ABG86260.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
Length = 244
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 31/148 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARF-----------------DCLFRNYKYWFPQAGLDI 265
LN+ LP+DI ++ V E + AR+ L RNY Y + LD+
Sbjct: 79 LNSKLPKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNREEPPALERNYVYHVKKQ-LDV 137
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ---------FND 316
++M +A +Y +G HDF+ + G V R +T + ++ +N
Sbjct: 138 ESMKEACKYFLGKHDFKAFQRP--GGTVKTSVRTITDIHIEIEGNKIKIYVSADGFLYNM 195
Query: 317 IKEVVDSEPSFKKGQGNEKPEIIQQLVD 344
++ +V + K G+G EKPE I++++D
Sbjct: 196 VRLIVGT--LLKVGRGKEKPEYIKEVID 221
>gi|84494739|ref|ZP_00993858.1| tRNA pseudouridine synthase [Janibacter sp. HTCC2649]
gi|84384232|gb|EAQ00112.1| tRNA pseudouridine synthase [Janibacter sp. HTCC2649]
Length = 283
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 51/128 (39%), Gaps = 19/128 (14%)
Query: 187 DPHAYIRTPVVTLKIRSKLTS--PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 244
D + R VV + L + PG S E L LP D+ V A S P+ +
Sbjct: 56 DAGVHARGQVVHADVDDTLYAALPGRSSRSPEEAARTRLAGILPSDVVVRAVSRAPDGFD 115
Query: 245 ARFDCLFRNYKYWF---PQA--------------GLDIDAMHKAAQYLVGTHDFRNLCKM 287
ARF L R Y Y P A LD+ AM++AA LVG HDF CK
Sbjct: 116 ARFAALRRRYLYRICDDPGALDPLRRGDTVVLKDPLDVAAMNEAAGRLVGLHDFAAFCKK 175
Query: 288 NVGNGVVN 295
G V
Sbjct: 176 RDGATTVR 183
>gi|403261916|ref|XP_003923348.1| PREDICTED: transcription initiation factor TFIID subunit 8 [Saimiri
boliviensis boliviensis]
Length = 269
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 153 PVAPSTQPKPLSILQ 167
T +P+S Q
Sbjct: 121 ARKVRTYREPVSDYQ 135
>gi|240143728|ref|ZP_04742329.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82]
gi|257204287|gb|EEV02572.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82]
gi|291537295|emb|CBL10407.1| pseudouridylate synthase I [Roseburia intestinalis M50/1]
gi|291539242|emb|CBL12353.1| pseudouridylate synthase I [Roseburia intestinalis XB6B4]
Length = 251
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 210 EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG------- 262
EE D++++ L LN LP DI V V E++ +R+ + + Y Y
Sbjct: 68 EEWDEDKI--LFYLNQYLPEDIAVCEVKRVDERFHSRYQAVEKTYLYRIHTGKIPEVFER 125
Query: 263 ---------LDIDAMHKAAQYLVGTHDFRNLC 285
LD++ M KAA+YL GTHDF++ C
Sbjct: 126 RYVYDYTEPLDVNRMRKAAEYLCGTHDFKSFC 157
>gi|448474280|ref|ZP_21602139.1| tRNA pseudouridine synthase A [Halorubrum aidingense JCM 13560]
gi|445817587|gb|EMA67456.1| tRNA pseudouridine synthase A [Halorubrum aidingense JCM 13560]
Length = 288
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 218 PYL--KMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
P+L + N LP I+V A + V E + A D + R Y+Y +D D + A L
Sbjct: 76 PWLTPRAFNGQLPGSIRVWAAADVREGFHATHDAVERTYRYHLYAPAIDDDRVRDALTRL 135
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLVTHAG----VTSAWQNVQFNDIKEVVDSEPSFKKGQ 331
G HDF NL G V N T AG + + ++ VV + + G+
Sbjct: 136 SGEHDFHNLTSDETGT-VRNLTATATRAGDLLVIELSAGGFPRALVRRVVSAVRAV--GR 192
Query: 332 GNEKPEIIQQLVDIEKYP 349
G +P I +L+ E P
Sbjct: 193 GTTEPARIDRLLAAEPVP 210
>gi|218135248|ref|ZP_03464052.1| hypothetical protein BACPEC_03153 [[Bacteroides] pectinophilus ATCC
43243]
gi|217990633|gb|EEC56644.1| tRNA pseudouridine synthase A [[Bacteroides] pectinophilus ATCC
43243]
Length = 196
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 16/82 (19%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDID 266
LN LP DI V VP Y R + Y+Y +F LD++
Sbjct: 79 LNARLPEDIVVQKSCEVPPDYHPRHCSTIKTYEYHILNRTFRLPQMRNNTFFCHYALDLE 138
Query: 267 AMHKAAQYLVGTHDFRNLCKMN 288
M++AAQYL+G HDF++ C +N
Sbjct: 139 TMNEAAQYLLGEHDFKSFCSVN 160
>gi|224035593|gb|ACN36872.1| unknown [Zea mays]
Length = 199
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 268 MHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPS- 326
M KAA +G HDFRN CKM+ N V N++R +T +++ + +++ + +
Sbjct: 1 MQKAASKFIGEHDFRNFCKMDAAN-VSNYRRHITEFTISACDRRSNNDELCSMTIKGSAF 59
Query: 327 ------------FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG E P ++ L+DI K R
Sbjct: 60 LWHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSR 95
>gi|417895573|ref|ZP_12539559.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21235]
gi|341841701|gb|EGS83154.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21235]
Length = 210
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPEPLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
>gi|333373218|ref|ZP_08465134.1| tRNA pseudouridine synthase A [Desmospora sp. 8437]
gi|332970797|gb|EGK09777.1| tRNA pseudouridine synthase A [Desmospora sp. 8437]
Length = 258
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 18/80 (22%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------WFPQA 261
++++LN +LPRD+ V VP ++ AR+D +++Y+Y +P
Sbjct: 75 WVRLLNASLPRDLLVTQAKEVPREFHARYDACWKHYRYTLDTCPIPDLFRRRYQTHYPHP 134
Query: 262 GLDIDAMHKAAQYLVGTHDF 281
L D M +AA++L GTHDF
Sbjct: 135 -LSRDRMQRAARHLTGTHDF 153
>gi|27468710|ref|NP_765347.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis ATCC
12228]
gi|417645784|ref|ZP_12295677.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU144]
gi|417912394|ref|ZP_12556088.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU105]
gi|418607880|ref|ZP_13171098.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU057]
gi|418621671|ref|ZP_13184437.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU123]
gi|420188208|ref|ZP_14694219.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM039]
gi|32130291|sp|Q8CML6.1|TRUA_STAES RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|27316258|gb|AAO05433.1|AE016750_38 tRNA pseudouridine synthase A [Staphylococcus epidermidis ATCC
12228]
gi|329731249|gb|EGG67619.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU144]
gi|341650968|gb|EGS74777.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU105]
gi|374403041|gb|EHQ74050.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU057]
gi|374828349|gb|EHR92184.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU123]
gi|394255137|gb|EJE00096.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM039]
Length = 267
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V E + R+DC+ + Y+Y Q LD D
Sbjct: 78 MNRALPDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNHRNPFKSGTETFVNETLDYD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M+KAAQ +GTHDF C
Sbjct: 138 KMNKAAQEFIGTHDFTGFC 156
>gi|269796221|ref|YP_003315676.1| pseudouridylate synthase I [Sanguibacter keddieii DSM 10542]
gi|269098406|gb|ACZ22842.1| pseudouridylate synthase I [Sanguibacter keddieii DSM 10542]
Length = 287
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 17/98 (17%)
Query: 206 TSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY--------- 256
T G E L + LP D+ V A S P + ARF L R Y+Y
Sbjct: 76 TVSGRGHRTGEQALLSRMTGVLPTDVVVRAVSVAPPGFDARFSALSRRYRYRIVDRHALR 135
Query: 257 ------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCK 286
W + + LD+DAM A Q LVG DF+ C+
Sbjct: 136 DPLRADWVLWSKRPLDVDAMQAAVQPLVGVRDFKAFCR 173
>gi|57867747|ref|YP_189363.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis RP62A]
gi|293368464|ref|ZP_06615088.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417658724|ref|ZP_12308344.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU045]
gi|417908408|ref|ZP_12552166.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU037]
gi|418605582|ref|ZP_13168900.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU041]
gi|418628222|ref|ZP_13190776.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU127]
gi|420166434|ref|ZP_14673119.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM088]
gi|420170703|ref|ZP_14677262.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM070]
gi|420207115|ref|ZP_14712607.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM008]
gi|420209941|ref|ZP_14715374.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM003]
gi|420221050|ref|ZP_14726004.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIH04008]
gi|420223461|ref|ZP_14728358.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIH08001]
gi|420223887|ref|ZP_14728749.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIH06004]
gi|420229955|ref|ZP_14734655.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIH04003]
gi|420232406|ref|ZP_14737044.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis
NIH051668]
gi|62901168|sp|Q5HM30.1|TRUA_STAEQ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|57638405|gb|AAW55193.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis RP62A]
gi|291317422|gb|EFE57844.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329737018|gb|EGG73273.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU045]
gi|341656285|gb|EGS80005.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU037]
gi|374402030|gb|EHQ73076.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU041]
gi|374838274|gb|EHS01821.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU127]
gi|394233645|gb|EJD79242.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM088]
gi|394239755|gb|EJD85188.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM070]
gi|394275589|gb|EJE19962.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM008]
gi|394277373|gb|EJE21697.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM003]
gi|394285280|gb|EJE29363.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIH04008]
gi|394287484|gb|EJE31444.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIH08001]
gi|394296949|gb|EJE40563.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIH06004]
gi|394298427|gb|EJE41997.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIH04003]
gi|394301268|gb|EJE44730.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis
NIH051668]
Length = 267
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V E + R+DC+ + Y+Y Q LD D
Sbjct: 78 MNRALPDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNHRNPFKSGTETFVNETLDYD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M+KAAQ +GTHDF C
Sbjct: 138 KMNKAAQEFIGTHDFTGFC 156
>gi|425057402|ref|ZP_18460821.1| tRNA pseudouridine synthase A [Enterococcus faecium 504]
gi|403040550|gb|EJY51621.1| tRNA pseudouridine synthase A [Enterococcus faecium 504]
Length = 246
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 18/79 (22%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF-----------------RNYKYWFPQAG 262
+ +N LPRDI + +PE++ +R++ + RNY ++FPQ
Sbjct: 77 IDFMNRYLPRDIVIKRIEEMPERFHSRYNAVGKKYSYYVWNNVIPSAFERNYSFYFPQE- 135
Query: 263 LDIDAMHKAAQYLVGTHDF 281
LD+D ++ A + LVGTHDF
Sbjct: 136 LDMDKLNAACEKLVGTHDF 154
>gi|418413189|ref|ZP_12986432.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis BVS058A4]
gi|418623769|ref|ZP_13186468.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU125]
gi|420212696|ref|ZP_14718043.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM001]
gi|374829503|gb|EHR93303.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU125]
gi|394279080|gb|EJE23390.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM001]
gi|410879277|gb|EKS27127.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis BVS058A4]
Length = 267
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V E + R+DC+ + Y+Y Q LD D
Sbjct: 78 MNRALPDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNHRNPFKSGTETFVYETLDYD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M+KAAQ +GTHDF C
Sbjct: 138 KMNKAAQEFIGTHDFTGFC 156
>gi|381164284|ref|ZP_09873514.1| pseudouridylate synthase I [Saccharomonospora azurea NA-128]
gi|379256189|gb|EHY90115.1| pseudouridylate synthase I [Saccharomonospora azurea NA-128]
Length = 306
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 17/85 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG-----------------LDI 265
LN LP D++V+ S P + ARF R+Y+Y A LD+
Sbjct: 116 LNRVLPADVRVLRVSRAPAGFDARFSAAKRHYRYQVSDAPWGVSPLRRRDTLAWTRPLDV 175
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVG 290
+AM++AA L+G HDF CK G
Sbjct: 176 EAMNEAASQLLGLHDFAAFCKKREG 200
>gi|189500072|ref|YP_001959542.1| tRNA pseudouridine synthase A [Chlorobium phaeobacteroides BS1]
gi|189495513|gb|ACE04061.1| tRNA pseudouridine synthase A [Chlorobium phaeobacteroides BS1]
Length = 233
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ---------AG-----LDI 265
L LN LP + + VP+ + AR+ LFR Y+Y+F + AG LD+
Sbjct: 72 LHSLNALLPSTVCIRDMQEVPDSFHARYSALFREYRYFFLEKPSALGKRYAGVYGGRLDV 131
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVGNG 292
D +++ A LVG HDF K + NG
Sbjct: 132 DRLNRCAGELVGRHDFSAYAKEDAQNG 158
>gi|420189324|ref|ZP_14695301.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM037]
gi|420205057|ref|ZP_14710592.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM015]
gi|394262250|gb|EJE07027.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM037]
gi|394271137|gb|EJE15635.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM015]
Length = 267
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V E + R+DC+ + Y+Y Q LD D
Sbjct: 78 MNRALPDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNHRNPFKSGTETFVYETLDYD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M+KAAQ +GTHDF C
Sbjct: 138 KMNKAAQEFIGTHDFTGFC 156
>gi|418634457|ref|ZP_13196851.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU129]
gi|374836987|gb|EHS00560.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU129]
Length = 267
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V E + R+DC+ + Y+Y Q LD D
Sbjct: 78 MNRALPDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNHRNPFKSGTETFVYETLDYD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M+KAAQ +GTHDF C
Sbjct: 138 KMNKAAQEFIGTHDFTGFC 156
>gi|416125852|ref|ZP_11596199.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis FRI909]
gi|420199184|ref|ZP_14704864.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM031]
gi|319400595|gb|EFV88820.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis FRI909]
gi|394272340|gb|EJE16802.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM031]
Length = 267
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V E + R+DC+ + Y+Y Q LD D
Sbjct: 78 MNRALPDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNHRNPFKSGTETFVYETLDYD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M+KAAQ +GTHDF C
Sbjct: 138 KMNKAAQEFIGTHDFTGFC 156
>gi|418327351|ref|ZP_12938512.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis
14.1.R1.SE]
gi|418615028|ref|ZP_13177984.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU118]
gi|420176611|ref|ZP_14683019.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM057]
gi|420181213|ref|ZP_14687417.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM053]
gi|365233082|gb|EHM74049.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis
14.1.R1.SE]
gi|374818783|gb|EHR82930.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU118]
gi|394246913|gb|EJD92164.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM053]
gi|394252454|gb|EJD97488.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM057]
Length = 267
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V E + R+DC+ + Y+Y Q LD D
Sbjct: 78 MNRALPDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNHRNPFKSGTETFVYETLDYD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M+KAAQ +GTHDF C
Sbjct: 138 KMNKAAQEFIGTHDFTGFC 156
>gi|417644105|ref|ZP_12294124.1| tRNA pseudouridine synthase A [Staphylococcus warneri VCU121]
gi|445059057|ref|YP_007384461.1| tRNA pseudouridine synthase A [Staphylococcus warneri SG1]
gi|330685169|gb|EGG96833.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU121]
gi|443425114|gb|AGC90017.1| tRNA pseudouridine synthase A [Staphylococcus warneri SG1]
Length = 267
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA----------------GLDID 266
+N+ LP DI V + V E + R+DC+ + Y+Y QA LD++
Sbjct: 78 MNSALPDDIYVKSVQHVDEDFHCRYDCVGKRYRYKVYQAKHRDPFQSGLKTYIADSLDLN 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AA+ +GTHDF C
Sbjct: 138 QMNEAAKRFIGTHDFTGFC 156
>gi|242243978|ref|ZP_04798421.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis W23144]
gi|418631142|ref|ZP_13193612.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU128]
gi|420175790|ref|ZP_14682220.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM061]
gi|420191477|ref|ZP_14697393.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM023]
gi|242232611|gb|EES34923.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis W23144]
gi|374835910|gb|EHR99506.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU128]
gi|394242477|gb|EJD87868.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM061]
gi|394266510|gb|EJE11142.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM023]
Length = 267
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V E + R+DC+ + Y+Y Q LD D
Sbjct: 78 MNRALPDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNHRNPFKSGTETFVYETLDYD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M+KAAQ +GTHDF C
Sbjct: 138 KMNKAAQEFIGTHDFTGFC 156
>gi|47229098|emb|CAG03850.1| unnamed protein product [Tetraodon nigroviridis]
Length = 220
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 138 GLDTYAKRPMRTVF--PPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTP 195
L YAKR R V PPV + P L AG K+ HP +IP + P FPDPH YI+TP
Sbjct: 60 SLPVYAKRSQRMVITAPPV--TNLPVTPKALTAGHKRSHPSYIPSHFPEFPDPHTYIKTP 117
Query: 196 V 196
Sbjct: 118 T 118
>gi|421607933|ref|ZP_16049165.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis AU12-03]
gi|406656354|gb|EKC82761.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis AU12-03]
Length = 267
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V E + R+DC+ + Y+Y Q LD D
Sbjct: 78 MNRALPDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNHRNPFKSGTETFVYETLDYD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M+KAAQ +GTHDF C
Sbjct: 138 KMNKAAQEFIGTHDFTGFC 156
>gi|420185876|ref|ZP_14691953.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM040]
gi|394253230|gb|EJD98243.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM040]
Length = 267
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V E + R+DC+ + Y+Y Q LD D
Sbjct: 78 MNRALPDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNHRNPFKSGTETFVYETLDYD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M+KAAQ +GTHDF C
Sbjct: 138 KMNKAAQEFIGTHDFTGFC 156
>gi|251812078|ref|ZP_04826551.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis
BCM-HMP0060]
gi|282875373|ref|ZP_06284246.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis SK135]
gi|417656432|ref|ZP_12306117.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU028]
gi|417913234|ref|ZP_12556903.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU109]
gi|418610774|ref|ZP_13173881.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU065]
gi|418664312|ref|ZP_13225795.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU081]
gi|419768344|ref|ZP_14294471.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus IS-250]
gi|419771550|ref|ZP_14297602.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus IS-K]
gi|420198126|ref|ZP_14703843.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM020]
gi|420203046|ref|ZP_14708631.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM018]
gi|420228386|ref|ZP_14733138.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIH05003]
gi|251804412|gb|EES57069.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis
BCM-HMP0060]
gi|281296138|gb|EFA88659.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis SK135]
gi|329736438|gb|EGG72706.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU028]
gi|341656327|gb|EGS80046.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU109]
gi|374403611|gb|EHQ74611.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU065]
gi|374410610|gb|EHQ81353.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU081]
gi|383360258|gb|EID37661.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus IS-250]
gi|383361274|gb|EID38652.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus IS-K]
gi|394264860|gb|EJE09529.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM020]
gi|394268760|gb|EJE13314.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM018]
gi|394294970|gb|EJE38630.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIH05003]
Length = 267
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V E + R+DC+ + Y+Y Q LD D
Sbjct: 78 MNRALPDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNHRNPFKSGTETFVYETLDYD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M+KAAQ +GTHDF C
Sbjct: 138 KMNKAAQEFIGTHDFTGFC 156
>gi|229489482|ref|ZP_04383345.1| tRNA pseudouridine synthase A [Rhodococcus erythropolis SK121]
gi|229323579|gb|EEN89337.1| tRNA pseudouridine synthase A [Rhodococcus erythropolis SK121]
Length = 294
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----- 262
PGE D+ ++ L LP+D++V S VP + ARF + R Y+Y A
Sbjct: 86 PGELLPDDPSRLVRRLARFLPKDVRVKQISVVPGDFDARFSAMRRYYEYRVTNAAFGVEP 145
Query: 263 ------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 294
LD+ AM +A+ L+G H+F CK G V
Sbjct: 146 LRARDTVSYPKPLDLGAMQEASNRLLGLHNFAAFCKRREGATTV 189
>gi|418612877|ref|ZP_13175900.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU117]
gi|418617865|ref|ZP_13180754.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU120]
gi|418627192|ref|ZP_13189772.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU126]
gi|420164318|ref|ZP_14671049.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM095]
gi|420169115|ref|ZP_14675719.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM087]
gi|420173558|ref|ZP_14680050.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM067]
gi|420183513|ref|ZP_14689641.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM049]
gi|420195279|ref|ZP_14701073.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM021]
gi|420214690|ref|ZP_14719966.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIH05005]
gi|420217009|ref|ZP_14722196.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIH05001]
gi|420235059|ref|ZP_14739611.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis
NIH051475]
gi|374817608|gb|EHR81787.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU117]
gi|374817749|gb|EHR81927.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU120]
gi|374830055|gb|EHR93844.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU126]
gi|394231939|gb|EJD77560.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM095]
gi|394232009|gb|EJD77629.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM087]
gi|394239913|gb|EJD85345.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM067]
gi|394248687|gb|EJD93918.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM049]
gi|394263476|gb|EJE08207.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIHLM021]
gi|394283082|gb|EJE27259.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIH05005]
gi|394290780|gb|EJE34626.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis NIH05001]
gi|394303587|gb|EJE47005.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis
NIH051475]
Length = 267
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V E + R+DC+ + Y+Y Q LD D
Sbjct: 78 MNRALPDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNHRNPFKSGTETFVYETLDYD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M+KAAQ +GTHDF C
Sbjct: 138 KMNKAAQEFIGTHDFTGFC 156
>gi|418322916|ref|ZP_12934217.1| tRNA pseudouridine synthase A [Staphylococcus pettenkoferi VCU012]
gi|365230570|gb|EHM71656.1| tRNA pseudouridine synthase A [Staphylococcus pettenkoferi VCU012]
Length = 267
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N+ LP DI V V + + R+DC+ + Y+Y Q LDI+
Sbjct: 78 MNSALPDDIYVHDIQFVSDDFHCRYDCVGKTYRYKIYQGAHKDPFQSGLKTYIPYQLDIE 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
+M +AAQ VGTHDF C
Sbjct: 138 SMQEAAQAFVGTHDFTGFC 156
>gi|347539310|ref|YP_004846735.1| tRNA pseudouridine synthase A [Pseudogulbenkiania sp. NH8B]
gi|345642488|dbj|BAK76321.1| tRNA pseudouridine synthase A [Pseudogulbenkiania sp. NH8B]
Length = 262
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 20/111 (18%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-------------- 256
E + E +++ +N++LP DI VV V E++ ARF R+Y Y
Sbjct: 66 EVERPENAWVRGVNSHLPADIAVVWAKQVGEEFHARFSAFSRSYSYFLLTHPVRSCLLAG 125
Query: 257 ---WFPQAGLDIDAMHKAAQYLVGTHDFRNL--CKMNVGNGVVNFKRLVTH 302
W+ Q LD++AM +AA +L+G HDF + + + V + +RL H
Sbjct: 126 KVGWYHQP-LDVEAMREAAAHLLGRHDFSSFRAAECQAKSPVKHLQRLDIH 175
>gi|453068393|ref|ZP_21971672.1| tRNA pseudouridine synthase TruA [Rhodococcus qingshengii BKS
20-40]
gi|452766043|gb|EME24294.1| tRNA pseudouridine synthase TruA [Rhodococcus qingshengii BKS
20-40]
Length = 294
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----- 262
PGE D+ ++ L LP+D++V S VP + ARF + R Y+Y A
Sbjct: 86 PGELLPDDPSRLVRRLARFLPKDVRVKQISVVPGDFDARFSAMRRYYEYRVTNAAFGVEP 145
Query: 263 ------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 294
LD+ AM +A+ L+G H+F CK G V
Sbjct: 146 LRARDTVSYPKPLDLGAMQEASNRLLGLHNFAAFCKRREGATTV 189
>gi|224825086|ref|ZP_03698192.1| tRNA pseudouridine synthase A [Pseudogulbenkiania ferrooxidans
2002]
gi|224602757|gb|EEG08934.1| tRNA pseudouridine synthase A [Pseudogulbenkiania ferrooxidans
2002]
Length = 262
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 20/111 (18%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-------------- 256
E + E +++ +N++LP DI VV V E++ ARF R+Y Y
Sbjct: 66 EVERPENAWVRGVNSHLPADIAVVWAKQVDEEFHARFSAFSRSYSYFLLTHPVRSCLLAG 125
Query: 257 ---WFPQAGLDIDAMHKAAQYLVGTHDFRNL--CKMNVGNGVVNFKRLVTH 302
W+ Q LD++AM +AA +L+G HDF + + + V + +RL H
Sbjct: 126 KVGWYHQP-LDVEAMREAAAHLLGRHDFSSFRAAECQAKSPVKHLQRLDIH 175
>gi|297192674|ref|ZP_06910072.1| tRNA pseudouridine synthase A [Streptomyces pristinaespiralis ATCC
25486]
gi|197721671|gb|EDY65579.1| tRNA pseudouridine synthase A [Streptomyces pristinaespiralis ATCC
25486]
Length = 286
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 23/103 (22%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------- 256
P E ++ LK L L RD+++ + + PE ++ARF ++R Y Y
Sbjct: 78 PSELWAEHREKLLKRLAGRLSRDVRIWSVAEAPEGFNARFSAIWRRYAYRVTDNPGGVDP 137
Query: 257 -------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W +P LD+ AM++A+ LVG HDF CK G
Sbjct: 138 LLRGHVLWHDWP---LDVAAMNEASAGLVGEHDFAAYCKKRDG 177
>gi|182418813|ref|ZP_02950078.1| tRNA pseudouridine synthase A [Clostridium butyricum 5521]
gi|237666467|ref|ZP_04526452.1| tRNA pseudouridine synthase A [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377310|gb|EDT74871.1| tRNA pseudouridine synthase A [Clostridium butyricum 5521]
gi|237657666|gb|EEP55221.1| tRNA pseudouridine synthase A [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 244
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 36/163 (22%)
Query: 206 TSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY--------- 256
T PG++ + + LN LP+D+ ++ V E + AR+ + Y Y
Sbjct: 69 TIPGDK-------FREALNVRLPKDVSIIRSEEVSEDFHARYSSKGKTYSYTIIHRYERV 121
Query: 257 -------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAW 309
+ + LDID M +A +Y +GTHDFR M+ G+ + R +T +
Sbjct: 122 SFGHQYVYHWRHDLDIDNMREACKYFIGTHDFRAF--MSPGSSIKTTVRTITDLHIEQNG 179
Query: 310 QNVQ---------FNDIKEVVDSEPSFKKGQGNEKPEIIQQLV 343
+ ++ +N ++ +V + K G KPE IQ ++
Sbjct: 180 EKIKIFVSADGFLYNMVRIIVGT--LIKVGNKKLKPEDIQDII 220
>gi|383818685|ref|ZP_09973971.1| tRNA pseudouridine synthase A [Mycobacterium phlei RIVM601174]
gi|383338541|gb|EID16905.1| tRNA pseudouridine synthase A [Mycobacterium phlei RIVM601174]
Length = 290
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 31/120 (25%)
Query: 188 PHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 247
P AY RT T PG D P ++ L LP D++V+ P + ARF
Sbjct: 83 PRAYPRT-----------TRPG---DAEFTPLVRRLARLLPGDVRVLDIVRAPAGFDARF 128
Query: 248 DCLFRNYKYWFPQAG-----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
L R+Y Y A LD+DAM++A++ L+G HDF C+ G
Sbjct: 129 SALRRHYTYRLSTAPYGVEPQDTRFVTAWPRPLDVDAMNEASRPLLGLHDFAAFCRHREG 188
>gi|432332241|ref|YP_007250384.1| pseudouridylate synthase I [Methanoregula formicicum SMSP]
gi|432138950|gb|AGB03877.1| pseudouridylate synthase I [Methanoregula formicicum SMSP]
Length = 280
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 7/132 (5%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTH 279
+ +N LP D A++ V + R+D R Y+Y+F +A IDAM AA VG+H
Sbjct: 90 VATINLQLPPDCWCTAYAEVSPTFHPRYDAKKRTYRYFFSRAPPCIDAMAHAAARFVGSH 149
Query: 280 DFRNLCKMNVGN--GVVNFKRLVTHAGVTS---AWQNVQFNDIKEVVDSEPSFKKGQGNE 334
+F + +M+ N V R++ G ++ ++ ++ + + + G+G E
Sbjct: 150 NFSSFARMDGRNPCRTVYSARVLEEGGFVCLEVTAESFLWHQVRCMATA--LLRIGEGEE 207
Query: 335 KPEIIQQLVDIE 346
++I L+ E
Sbjct: 208 DVDLIDHLLTAE 219
>gi|288802284|ref|ZP_06407724.1| tRNA pseudouridine synthase A [Prevotella melaninogenica D18]
gi|288335251|gb|EFC73686.1| tRNA pseudouridine synthase A [Prevotella melaninogenica D18]
Length = 253
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 213 DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA----------- 261
D +L Y +N LPRD+ V PV E ARF R Y Y+
Sbjct: 71 DSAQLVY--KVNRLLPRDVSVSRIEPVGEDLHARFSATSRTYHYYVHTGKQPFSRQYSCE 128
Query: 262 ---GLDIDAMHKAAQYLVGTHDFRNLCK 286
LD D M++AA YL+G DF+ CK
Sbjct: 129 FRYALDFDKMNEAAAYLIGEKDFKCFCK 156
>gi|229496121|ref|ZP_04389842.1| tRNA pseudouridine synthase A [Porphyromonas endodontalis ATCC
35406]
gi|229316952|gb|EEN82864.1| tRNA pseudouridine synthase A [Porphyromonas endodontalis ATCC
35406]
Length = 264
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 22/88 (25%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW------------------FPQ 260
+ K LN LP +I + + PV ARFD + R Y Y+ FP
Sbjct: 77 WRKSLNGILPHNINIRSIRPVQPSAHARFDAISRRYLYFIAEERDPFNRQWVLPVRPFP- 135
Query: 261 AGLDIDAMHKAAQYLVGTHDFRNLCKMN 288
DI+ M++AAQYL+GTHDF + +++
Sbjct: 136 ---DIEKMNQAAQYLLGTHDFTSFSRLH 160
>gi|404416694|ref|ZP_10998509.1| tRNA pseudouridine synthase A [Staphylococcus arlettae CVD059]
gi|403490898|gb|EJY96428.1| tRNA pseudouridine synthase A [Staphylococcus arlettae CVD059]
Length = 267
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N+ LP DI V + V +++ R+DCL ++Y+Y Q LD+
Sbjct: 78 MNSALPDDILVHDVTVVDDEFHCRYDCLGKSYRYKVYQTSQRDPFQSGLKTHVNVQLDLT 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ VGTHDF C
Sbjct: 138 KMNQAAQAFVGTHDFTGFC 156
>gi|392944788|ref|ZP_10310430.1| pseudouridylate synthase I [Frankia sp. QA3]
gi|392288082|gb|EIV94106.1| pseudouridylate synthase I [Frankia sp. QA3]
Length = 298
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 221 KMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG-----------------L 263
+ LN L R ++V +P P + ARF L R Y Y A L
Sbjct: 106 RRLNGVLDRSVRVTGLAPAPAGFDARFSALSRRYVYRITDAAFGAEPLRRFDTLAWPRPL 165
Query: 264 DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 295
D AM AA LVG HDF C+ G V
Sbjct: 166 DAPAMASAALLLVGEHDFAAFCRRREGATTVR 197
>gi|260592560|ref|ZP_05858018.1| tRNA pseudouridine synthase A [Prevotella veroralis F0319]
gi|260535606|gb|EEX18223.1| tRNA pseudouridine synthase A [Prevotella veroralis F0319]
Length = 253
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG--------------LDIDAM 268
LN LPRD+ V PV E ARF R Y Y+ LD D M
Sbjct: 79 LNRLLPRDVSVSQIVPVSEDLHARFSATSRTYHYYVHTTKQPFSRQYSCEIHYPLDFDKM 138
Query: 269 HKAAQYLVGTHDFRNLCK 286
++AA YL+G DF+ CK
Sbjct: 139 NEAADYLIGEKDFKCFCK 156
>gi|326932368|ref|XP_003212291.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Meleagris
gallopavo]
Length = 292
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 23/104 (22%)
Query: 207 SPGEESDDNELPYLKMLNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYKY--------- 256
+PG+ + ++ + LN++L P I++++ V + ARF L R Y Y
Sbjct: 77 APGKPAFQEKM-LIGCLNHHLKPEPIRILSAYRVTNNFHARFSALSRTYIYRLLMGCTHH 135
Query: 257 -----------WFPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMN 288
W P G L++ AM AAQ+L+GTHDF C +N
Sbjct: 136 SEIPVFERDLCWAPTGGYLNVPAMQDAAQFLLGTHDFSTFCSLN 179
>gi|90408620|ref|ZP_01216774.1| tRNA pseudouridine synthase A [Psychromonas sp. CNPT3]
gi|90310264|gb|EAS38395.1| tRNA pseudouridine synthase A [Psychromonas sp. CNPT3]
Length = 261
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 20/94 (21%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY---------WFPQAGL-- 263
N++ + +N NLP+DI V V + + ARF R Y+Y +GL
Sbjct: 70 NDVAWTLGINANLPKDIAVRWCKHVDDSFHARFSATARRYRYIIYNHVLRPGILNSGLSH 129
Query: 264 -----DIDAMHKAAQYLVGTHDFRNL----CKMN 288
D D MH+A Q++VGTHDF + C+ N
Sbjct: 130 YHHLLDADKMHQAGQFIVGTHDFTSFRALHCQAN 163
>gi|410671117|ref|YP_006923488.1| tRNA pseudouridine synthase A [Methanolobus psychrophilus R15]
gi|409170245|gb|AFV24120.1| tRNA pseudouridine synthase A [Methanolobus psychrophilus R15]
Length = 273
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
++D L +++N+ LP I A + +PE + R + R Y+Y DI +
Sbjct: 68 DTDKIHLAIPRVINSKLPTAIWAWAHAEIPEDFDPRRAAIARKYRYIMSGEQYDISRIRS 127
Query: 271 AAQYLVGTHDFRNLC 285
A++ L GTHDF N C
Sbjct: 128 ASRILAGTHDFSNFC 142
>gi|383811550|ref|ZP_09967013.1| tRNA pseudouridine(38-40) synthase [Prevotella sp. oral taxon 306
str. F0472]
gi|383355793|gb|EID33314.1| tRNA pseudouridine(38-40) synthase [Prevotella sp. oral taxon 306
str. F0472]
Length = 253
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG--------------LDIDAM 268
LN LPRD+ V PV E ARF R Y Y+ LD D M
Sbjct: 79 LNRLLPRDVSVSQIVPVSEDLHARFSATSRTYHYYVHTTKQPFSRQYSCEIHYPLDFDKM 138
Query: 269 HKAAQYLVGTHDFRNLCK 286
++AA YL+G DF+ CK
Sbjct: 139 NEAADYLIGEKDFKCFCK 156
>gi|154149764|ref|YP_001403382.1| tRNA pseudouridine synthase ACD [Methanoregula boonei 6A8]
gi|153998316|gb|ABS54739.1| tRNA pseudouridine synthase A [Methanoregula boonei 6A8]
Length = 276
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 221 KMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHD 280
+ LN+ LP DI A + VP+ + R+D R Y+Y+F + D AM AA+ G H+
Sbjct: 91 QALNSQLPPDIWCTATAVVPDHFHPRYDARSRTYRYYFGEPPRDPVAMETAAREFSGDHN 150
Query: 281 FRNLCKMNVGN 291
F N ++ N
Sbjct: 151 FTNFARVGDKN 161
>gi|429732176|ref|ZP_19266796.1| tRNA pseudouridine synthase A [Corynebacterium durum F0235]
gi|429144411|gb|EKX87530.1| tRNA pseudouridine synthase A [Corynebacterium durum F0235]
Length = 278
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 190 AYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 249
A++ P+ +L RS P ++ L LP DI+V + P + ARF
Sbjct: 62 AHVDVPIASLDTRSIGGDPTR--------MVRRLARLLPEDIRVQDCTFAPAGFDARFSA 113
Query: 250 LFRNYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCK 286
L R+Y Y P L D+ AM ++A YLVG HDF CK
Sbjct: 114 LRRHYTYRITTHPGGALPTRTRDTATWPKPVDMAAMQESANYLVGLHDFAAFCK 167
>gi|392529971|ref|ZP_10277108.1| tRNA-pseudouridine synthase [Carnobacterium maltaromaticum ATCC
35586]
gi|414083097|ref|YP_006991803.1| tRNA pseudouridine synthase A [Carnobacterium maltaromaticum LMA28]
gi|412996679|emb|CCO10488.1| tRNA pseudouridine synthase A [Carnobacterium maltaromaticum LMA28]
Length = 246
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 202 RSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW---- 257
R ++ + ES L+ +N LPRDI + VPE++ +R++ + Y Y+
Sbjct: 59 RGQIANFKTESTMELAKMLEFMNRYLPRDIIIKKVEEVPERFHSRYNATGKKYSYYIWND 118
Query: 258 -FPQA-----------GLDIDAMHKAAQYLVGTHDF 281
P A LDID M+KA L+G+HDF
Sbjct: 119 AIPSAFERQYTFQYAKKLDIDRMNKACSLLIGSHDF 154
>gi|90021726|ref|YP_527553.1| pseudouridylate synthase [Saccharophagus degradans 2-40]
gi|89951326|gb|ABD81341.1| tRNA pseudouridine synthase A [Saccharophagus degradans 2-40]
Length = 289
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 38/159 (23%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------W--FP 259
+L+ +N +LP I+V++ V + ARF L R Y+Y W P
Sbjct: 97 WLQGVNTHLPFSIRVISAKEVGFDFHARFSALSRTYRYVIHVSQVRSAHLVNGVTWVKLP 156
Query: 260 Q--AGLDIDAMHKAAQYLVGTHDFRNL----CK-------MNVGNGVVNFKRLVTHAGVT 306
Q +GLD+ AM +AA L+G HDF + C+ M V + VV +
Sbjct: 157 QKLSGLDVPAMQEAASLLLGEHDFTSFRTVHCQAASPVRTMEVAD-VVQMGEFIVVQVTA 215
Query: 307 SAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDI 345
+A+ + +I V+ + G+G KP + +L+++
Sbjct: 216 NAFLHHMVRNIVGVL-----LRVGRGELKPSRVTELIEL 249
>gi|83591242|ref|YP_431251.1| tRNA pseudouridine synthase A [Moorella thermoacetica ATCC 39073]
gi|123766692|sp|Q2RFT1.1|TRUA_MOOTA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|83574156|gb|ABC20708.1| tRNA pseudouridine synthase A [Moorella thermoacetica ATCC 39073]
Length = 246
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDID 266
LN+ LP DI + V + AR+ + Y+Y W + LD+
Sbjct: 81 LNSVLPADIAALEAVEVAPDFHARYCAKRKWYRYTIYNNRVPDVFCRRYSWHLRQPLDVI 140
Query: 267 AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKE 319
AM +AA YL G HDFR+ C G+ V +F+R V A V+ + F+ I +
Sbjct: 141 AMARAAAYLQGCHDFRSFCA--AGSPVRHFERQVQQASVSQNGPFIYFDVIAD 191
>gi|385206404|ref|ZP_10033274.1| pseudouridylate synthase I [Burkholderia sp. Ch1-1]
gi|385186295|gb|EIF35569.1| pseudouridylate synthase I [Burkholderia sp. Ch1-1]
Length = 270
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-------------- 256
E D ++ +++ N+ LP+ I V P+P+++ ARF R Y Y
Sbjct: 67 EIDRADVSWVRGTNSFLPKTISVQWAKPMPDEFHARFSAFERTYYYVLYVHPVRSPMLAT 126
Query: 257 ---WFPQAGLDIDAMHKAAQYLVGTHDF 281
W A LD+DAM AA +L+G HDF
Sbjct: 127 RAGWVHTA-LDVDAMQAAAAHLIGEHDF 153
>gi|224477189|ref|YP_002634795.1| tRNA pseudouridine synthase A [Staphylococcus carnosus subsp.
carnosus TM300]
gi|254764865|sp|B9DM46.1|TRUA_STACT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|222421796|emb|CAL28610.1| putative tRNA pseudouridine synthase A [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 267
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA----------------GLDID 266
+N+ LP DI V S V + + R+DC+ + Y+Y Q LD++
Sbjct: 78 MNSALPDDIYVNEVSIVDDDFHCRYDCVGKRYRYKVYQGKHRDVFMSGLKTFYADSLDLE 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNEAAQQFIGTHDFTGFC 156
>gi|118462566|ref|YP_883531.1| tRNA pseudouridine synthase A [Mycobacterium avium 104]
gi|254776828|ref|ZP_05218344.1| tRNA pseudouridine synthase A [Mycobacterium avium subsp. avium
ATCC 25291]
gi|118163853|gb|ABK64750.1| tRNA pseudouridine synthase A [Mycobacterium avium 104]
Length = 251
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 17/86 (19%)
Query: 218 PYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------W--FPQAG------- 262
P L+ L LP D++VV + P + ARF L R+Y Y W PQ
Sbjct: 62 PLLRRLGRFLPTDVRVVDITRAPAGFDARFSALRRHYVYRLSTAPWGVLPQQARYVTAWP 121
Query: 263 --LDIDAMHKAAQYLVGTHDFRNLCK 286
LD++AM A++ L+G HDF C+
Sbjct: 122 RPLDVEAMAAASRDLLGLHDFAAFCR 147
>gi|157374791|ref|YP_001473391.1| tRNA pseudouridine synthase A [Shewanella sediminis HAW-EB3]
gi|189030145|sp|A8FTU0.1|TRUA_SHESH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157317165|gb|ABV36263.1| tRNA-pseudouridine synthase I [Shewanella sediminis HAW-EB3]
Length = 261
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 25/147 (17%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFP----------------QAGLDID 266
+N NLP DI V V +++ ARF R Y+Y + +D D
Sbjct: 78 VNVNLPDDIAVRWVKIVDDEFHARFSATARRYRYMIYNYDFRPGILRSGVSHYRGNIDAD 137
Query: 267 AMHKAAQYLVGTHDFRNLCKMNVGNGV-------VNFKRLVTHAGVTSAWQNVQFNDIKE 319
MH+AAQ VG HDF + ++ + VN R + V + ++
Sbjct: 138 IMHQAAQQFVGEHDFTSFRALHCQSKTPFRSVHEVNVTRQGMYICVDIKANAFLHHMVRN 197
Query: 320 VVDSEPSFKKGQGNEKPEIIQQLVDIE 346
+V + + G GN++PE I QL+D++
Sbjct: 198 IVGT--LLEIGLGNQRPEWIPQLLDLK 222
>gi|41410333|ref|NP_963169.1| tRNA pseudouridine synthase A [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|440779713|ref|ZP_20958423.1| tRNA pseudouridine synthase A [Mycobacterium avium subsp.
paratuberculosis S5]
gi|51316707|sp|Q73S41.1|TRUA_MYCPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|41399167|gb|AAS06785.1| TruA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|436719799|gb|ELP44151.1| tRNA pseudouridine synthase A [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 251
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 17/86 (19%)
Query: 218 PYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------W--FPQAG------- 262
P L+ L LP D++VV + P + ARF L R+Y Y W PQ
Sbjct: 62 PLLRRLGRFLPTDVRVVDITRAPAGFDARFSALRRHYVYRLSTAPWGVLPQQARYVTAWP 121
Query: 263 --LDIDAMHKAAQYLVGTHDFRNLCK 286
LD++AM A++ L+G HDF C+
Sbjct: 122 RPLDVEAMAAASRDLLGLHDFAAFCR 147
>gi|387877652|ref|YP_006307956.1| tRNA pseudouridine synthase A [Mycobacterium sp. MOTT36Y]
gi|386791110|gb|AFJ37229.1| tRNA pseudouridine synthase A [Mycobacterium sp. MOTT36Y]
Length = 251
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 31/116 (26%)
Query: 188 PHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 247
P+AY R P V GE LP L+ L LP D++VV P + ARF
Sbjct: 46 PNAYSRAPHV-----------GEA---EFLPLLRRLGRFLPADVRVVDIVRAPAGFDARF 91
Query: 248 DCLFRNYKY------WF--PQAG---------LDIDAMHKAAQYLVGTHDFRNLCK 286
L R+Y Y W PQ LD++AM A++ L+G HDF C+
Sbjct: 92 SALRRHYVYRLSTAPWGVDPQQARYVTAWPRPLDVEAMATASRDLLGLHDFAAFCR 147
>gi|416157245|ref|ZP_11604988.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 101P30B1]
gi|416221709|ref|ZP_11625889.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 103P14B1]
gi|416231712|ref|ZP_11628839.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 46P47B1]
gi|416233832|ref|ZP_11629480.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 12P80B1]
gi|416245421|ref|ZP_11634473.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC8]
gi|416252079|ref|ZP_11637914.1| tRNA pseudouridine synthase A [Moraxella catarrhalis CO72]
gi|416255599|ref|ZP_11639269.1| tRNA pseudouridine synthase A [Moraxella catarrhalis O35E]
gi|421780263|ref|ZP_16216752.1| tRNA pseudouridine synthase A [Moraxella catarrhalis RH4]
gi|326559413|gb|EGE09838.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 46P47B1]
gi|326564997|gb|EGE15197.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 103P14B1]
gi|326566051|gb|EGE16211.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 12P80B1]
gi|326572448|gb|EGE22440.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC8]
gi|326572505|gb|EGE22494.1| tRNA pseudouridine synthase A [Moraxella catarrhalis CO72]
gi|326574101|gb|EGE24049.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 101P30B1]
gi|326576065|gb|EGE25984.1| tRNA pseudouridine synthase A [Moraxella catarrhalis O35E]
gi|407812419|gb|EKF83204.1| tRNA pseudouridine synthase A [Moraxella catarrhalis RH4]
Length = 268
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------WFPQ----------AG 262
+L+ N+ LP DI + P+P+ + ARF + R Y+Y + P
Sbjct: 77 WLRGTNSLLPDDIALRWVQPMPDDFHARFSAIARRYRYITLNQPYRPAILRHQVTHEYTK 136
Query: 263 LDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGVVNFKRLVTHA 303
LDIDAM A+Q++VGTHDF + C+ N V L H
Sbjct: 137 LDIDAMIIASQFIVGTHDFSSFRAAACQSNQPVRTVTHANLFQHG 181
>gi|156743919|ref|YP_001434048.1| tRNA pseudouridine synthase ACD [Roseiflexus castenholzii DSM
13941]
gi|189029997|sp|A7NR34.1|TRUA_ROSCS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|156235247|gb|ABU60030.1| tRNA pseudouridine synthase A [Roseiflexus castenholzii DSM 13941]
Length = 270
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 18/79 (22%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------WFPQAG 262
++ LN LP DI ++A VPE++ AR+ + R Y+Y + P+
Sbjct: 76 IRGLNGVLPEDIGILAAWEVPEEFHARYSAVRREYRYVIDNGRTPSPLLRRHAAYVPRR- 134
Query: 263 LDIDAMHKAAQYLVGTHDF 281
LD+ AM +A Q ++GTHDF
Sbjct: 135 LDVAAMDRAIQQVIGTHDF 153
>gi|407710034|ref|YP_006793898.1| tRNA pseudouridine38-40 synthase [Burkholderia phenoliruptrix
BR3459a]
gi|407238717|gb|AFT88915.1| tRNA pseudouridine38-40 synthase [Burkholderia phenoliruptrix
BR3459a]
Length = 270
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-------------- 256
E + ++ +++ N+ LP+ + V P+PE + ARF R Y Y
Sbjct: 67 ELERADISWVRGTNSFLPKTVSVQWAKPMPEAFHARFSAFERTYYYVLYVHPVRSPMLAA 126
Query: 257 ---WFPQAGLDIDAMHKAAQYLVGTHDF 281
W A LDIDAM +AA +L+G HDF
Sbjct: 127 RAGWV-HASLDIDAMREAAVHLIGEHDF 153
>gi|323529192|ref|YP_004231344.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1001]
gi|323386194|gb|ADX58284.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1001]
Length = 270
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-------------- 256
E + ++ +++ N+ LP+ + V P+PE + ARF R Y Y
Sbjct: 67 ELERADISWVRGTNSFLPKTVSVQWAKPMPEAFHARFSAFERTYYYVLYVHPVRSPMLAA 126
Query: 257 ---WFPQAGLDIDAMHKAAQYLVGTHDF 281
W A LDIDAM +AA +L+G HDF
Sbjct: 127 RAGWV-HASLDIDAMREAAVHLIGEHDF 153
>gi|402299426|ref|ZP_10819037.1| tRNA pseudouridine synthase A [Bacillus alcalophilus ATCC 27647]
gi|401725464|gb|EJS98749.1| tRNA pseudouridine synthase A [Bacillus alcalophilus ATCC 27647]
Length = 251
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 20/100 (20%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARF-----------------DCLFRNYKYWFPQA 261
+ K LN LP DI+++ V + + AR+ D RN+ Y F +
Sbjct: 76 WAKALNALLPADIRIIEAVEVSKDFHARYSAISKQYRYRILLTKEGDLFRRNHCYHFTEM 135
Query: 262 GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVT 301
LDI+A+ +AAQ+++G HDF C N V++ R VT
Sbjct: 136 -LDIEAIKEAAQHILGKHDFSAFCAAN--TSVIDKIRTVT 172
>gi|417747764|ref|ZP_12396223.1| pseudouridylate synthase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|336460702|gb|EGO39592.1| pseudouridylate synthase [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 248
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 17/86 (19%)
Query: 218 PYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------W--FPQAG------- 262
P L+ L LP D++VV + P + ARF L R+Y Y W PQ
Sbjct: 59 PLLRRLGRFLPTDVRVVDITRAPAGFDARFSALRRHYVYRLSTAPWGVLPQQARYVTAWP 118
Query: 263 --LDIDAMHKAAQYLVGTHDFRNLCK 286
LD++AM A++ L+G HDF C+
Sbjct: 119 RPLDVEAMAAASRDLLGLHDFAAFCR 144
>gi|167032538|ref|YP_001667769.1| tRNA pseudouridine synthase A [Pseudomonas putida GB-1]
gi|166859026|gb|ABY97433.1| tRNA pseudouridine synthase A [Pseudomonas putida GB-1]
Length = 286
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------W 257
+E + N NLP DI VV P+P + ARF R Y+Y W
Sbjct: 89 DERAWTMGTNFNLPHDISVVWSQPMPADFHARFKACARRYRYVIYNDPIRPAHLAEEVTW 148
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDF 281
+ LD++ M +AAQ+L+GTHDF
Sbjct: 149 NHRP-LDVERMAEAAQFLLGTHDF 171
>gi|296113461|ref|YP_003627399.1| tRNA pseudouridine synthase A [Moraxella catarrhalis RH4]
gi|416218358|ref|ZP_11624833.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 7169]
gi|416238144|ref|ZP_11631399.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC1]
gi|416244103|ref|ZP_11634297.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC7]
gi|295921155|gb|ADG61506.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BBH18]
gi|326559732|gb|EGE10142.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 7169]
gi|326568129|gb|EGE18213.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC7]
gi|326568548|gb|EGE18620.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC1]
Length = 268
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------WFPQ----------AG 262
+L+ N+ LP DI + P+P+ + ARF + R Y+Y + P
Sbjct: 77 WLRGTNSLLPDDIALRWVQPMPDDFHARFSAIARRYRYITLNQPYRPAILHHQVTHEYTK 136
Query: 263 LDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGVVNFKRLVTHA 303
LDIDAM A+Q++VGTHDF + C+ N V L H
Sbjct: 137 LDIDAMIIASQFIVGTHDFSSFRAAACQSNQPVRTVTHANLFQHG 181
>gi|418460835|ref|ZP_13031922.1| pseudouridylate synthase I [Saccharomonospora azurea SZMC 14600]
gi|359739143|gb|EHK88016.1| pseudouridylate synthase I [Saccharomonospora azurea SZMC 14600]
Length = 241
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 17/85 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG-----------------LDI 265
LN LP D++V+ S P + ARF R+Y+Y A LD+
Sbjct: 51 LNRVLPADVRVLRVSRAPAGFDARFSAAKRHYRYQVSDAPWGVSPLRRRDTLAWTRPLDV 110
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVG 290
+AM++AA L+G HDF CK G
Sbjct: 111 EAMNEAASQLLGLHDFAAFCKKREG 135
>gi|302385211|ref|YP_003821033.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1]
gi|302195839|gb|ADL03410.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1]
Length = 248
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA----------------GLDID 266
LN LP DI+V+ P E++ +R + + Y Y L+++
Sbjct: 81 LNQYLPEDIRVITLEPAKERFHSRLNAQEKTYLYRIEMGERKQVFERKYIYGLYKSLNVE 140
Query: 267 AMHKAAQYLVGTHDFRNLC 285
AM +A+ YL G HDF++ C
Sbjct: 141 AMERASAYLTGEHDFKSFC 159
>gi|441506129|ref|ZP_20988106.1| tRNA pseudouridine synthase A [Photobacterium sp. AK15]
gi|441426268|gb|ELR63753.1| tRNA pseudouridine synthase A [Photobacterium sp. AK15]
Length = 261
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 65/155 (41%), Gaps = 45/155 (29%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF----------------PQAGLDID 266
+N LP+DI V V E + ARF R Y+Y LD +
Sbjct: 78 VNAQLPKDIAVRWAKEVSEDFHARFSATARRYRYIIYNHALRPAILSTGVSHYHGELDTE 137
Query: 267 AMHKAAQYLVGTHDF--------------RNLCKMNV---GNGVVNFKRLVTHAGVTSAW 309
MH+A QYL+G +DF RNL +NV GN V+ + +A V
Sbjct: 138 KMHEAGQYLLGENDFTSFRAVHCQSLSPWRNLMHLNVSRQGNFVI--IDIKANAFVHHMV 195
Query: 310 QNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVD 344
+N+ + I K G+G EKPE IQ L++
Sbjct: 196 RNITGSLI----------KVGRGEEKPEWIQWLLE 220
>gi|425737487|ref|ZP_18855759.1| tRNA pseudouridine synthase A [Staphylococcus massiliensis S46]
gi|425481741|gb|EKU48899.1| tRNA pseudouridine synthase A [Staphylococcus massiliensis S46]
Length = 267
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW----------------FPQAGLDID 266
+N+ LP DI V + + + + R+DC+ + Y+Y F + LD+
Sbjct: 78 MNSALPHDIHVNDVTIISDDFHCRYDCVGKMYRYRTYHQDHINPFQYGLKTFVKEDLDLK 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
AM +AA++ +GTHDF C
Sbjct: 138 AMQEAAKHFIGTHDFTGFC 156
>gi|440696638|ref|ZP_20879093.1| tRNA pseudouridine synthase A [Streptomyces turgidiscabies Car8]
gi|440281146|gb|ELP68807.1| tRNA pseudouridine synthase A [Streptomyces turgidiscabies Car8]
Length = 281
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 213 DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY---------------- 256
D++ LK L LP+D++V + P ++ARF L+R Y Y
Sbjct: 84 DEHREKLLKRLAGRLPKDVRVWRAAEAPGGFNARFAALWRRYVYRVGDRPGGVDPLLRSH 143
Query: 257 --WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 295
W LD+D M AA+ LVG HDF K G V
Sbjct: 144 VLWHDWE-LDVDVMDAAAKSLVGEHDFAAYAKKREGASTVR 183
>gi|345873079|ref|ZP_08824999.1| tRNA pseudouridine synthase A [Thiorhodococcus drewsii AZ1]
gi|343917563|gb|EGV28358.1| tRNA pseudouridine synthase A [Thiorhodococcus drewsii AZ1]
Length = 260
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------W 257
+E ++ N NLP D+ V PVPE + ARF + R+Y+Y W
Sbjct: 66 SERSWVLGTNVNLPPDVAVRWAHPVPEDFHARFSAMARHYRYQIMVRRTRSALQRSRAVW 125
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDF 281
+A LD+ M +AA LVG HDF
Sbjct: 126 VHEA-LDLGCMREAASALVGEHDF 148
>gi|226184487|dbj|BAH32591.1| tRNA pseudouridine synthase TruA [Rhodococcus erythropolis PR4]
Length = 294
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----- 262
PGE D+ ++ L LP+D++V S VP + ARF + R Y+Y A
Sbjct: 86 PGELLPDDPSRLVRRLARFLPKDVRVKQISVVPGDFDARFSAIRRYYEYRVTNAAFGVEP 145
Query: 263 ------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 294
LD+ AM +A+ L+G H+F CK G V
Sbjct: 146 LRARDTVSYPKPLDLAAMQEASNRLLGLHNFAAFCKRREGATTV 189
>gi|90410767|ref|ZP_01218782.1| tRNA pseudouridine synthase A [Photobacterium profundum 3TCK]
gi|90328398|gb|EAS44696.1| tRNA pseudouridine synthase A [Photobacterium profundum 3TCK]
Length = 261
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 16/90 (17%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF------------ 258
+ D + + +N +LPRDI V +PV + + ARF R Y+Y
Sbjct: 66 DVDRQMVAWTIGVNAHLPRDISVRWATPVSDDFHARFSATARRYRYIIYNNALRPAIFGI 125
Query: 259 ----PQAGLDIDAMHKAAQYLVGTHDFRNL 284
LD MH+AAQYLVG HDF ++
Sbjct: 126 GVSHYHGHLDEKKMHEAAQYLVGEHDFTSV 155
>gi|167036834|ref|YP_001664412.1| tRNA pseudouridine synthase A [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|167039553|ref|YP_001662538.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X514]
gi|256752665|ref|ZP_05493517.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus
CCSD1]
gi|300915196|ref|ZP_07132511.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X561]
gi|307725120|ref|YP_003904871.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X513]
gi|320115256|ref|YP_004185415.1| tRNA pseudouridine synthase A [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|238687621|sp|B0K5S6.1|TRUA_THEPX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238687718|sp|B0KCN3.1|TRUA_THEP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|166853793|gb|ABY92202.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X514]
gi|166855668|gb|ABY94076.1| tRNA pseudouridine synthase A [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748485|gb|EEU61537.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus
CCSD1]
gi|300888920|gb|EFK84067.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X561]
gi|307582181|gb|ADN55580.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X513]
gi|319928347|gb|ADV79032.1| tRNA pseudouridine synthase A [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 244
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 165 ILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLN 224
+LQ +K+ + D + V K +K+ P E+ LPY LN
Sbjct: 30 VLQKAIKKVTGEEVNLIGASRTDTGVHALYQVANFKTNTKI--PAEK-----LPY--ALN 80
Query: 225 NNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDIDAM 268
+ LP DI VV V + + AR+ + YKY W L+I+ M
Sbjct: 81 SVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFQMPTMRNYCWHISYPLNIEEM 140
Query: 269 HKAAQYLVGTHDF 281
KAA YL+GTHDF
Sbjct: 141 KKAASYLIGTHDF 153
>gi|319779623|ref|YP_004130536.1| tRNA pseudouridine synthase A [Taylorella equigenitalis MCE9]
gi|397661854|ref|YP_006502554.1| tRNA pseudouridine synthase A [Taylorella equigenitalis ATCC 35865]
gi|317109647|gb|ADU92393.1| tRNA pseudouridine synthase A [Taylorella equigenitalis MCE9]
gi|394350033|gb|AFN35947.1| tRNA pseudouridine synthase A [Taylorella equigenitalis ATCC 35865]
gi|399114936|emb|CCG17732.1| tRNA pseudouridine synthase A [Taylorella equigenitalis 14/56]
Length = 268
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 16/87 (18%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------WFP 259
E D N +++ +N++LP I+V VP+ +SARF + R Y Y W
Sbjct: 68 EVDRNLESWIRGVNSHLPDSIRVRWSKIVPDSFSARFSAVSRTYVYLLRNERVMSPIWSG 127
Query: 260 QAG-----LDIDAMHKAAQYLVGTHDF 281
+AG LD+++M+ A + ++GTHDF
Sbjct: 128 RAGWDFHNLDVESMNIAKEKMIGTHDF 154
>gi|430837433|ref|ZP_19455401.1| tRNA pseudouridine synthase A [Enterococcus faecium E0680]
gi|431506669|ref|ZP_19515495.1| tRNA pseudouridine synthase A [Enterococcus faecium E1634]
gi|430487369|gb|ELA64117.1| tRNA pseudouridine synthase A [Enterococcus faecium E0680]
gi|430587056|gb|ELB25289.1| tRNA pseudouridine synthase A [Enterococcus faecium E1634]
Length = 246
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 18/79 (22%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF-----------------RNYKYWFPQAG 262
+ +N LPRDI + VPE++ +R++ + RN+ ++FPQ
Sbjct: 77 IDFMNRYLPRDIVIKRIEEVPERFHSRYNAVGKKYSYYVWNNVIPSAFERNHSFYFPQE- 135
Query: 263 LDIDAMHKAAQYLVGTHDF 281
LD+D ++ A + LVGTHDF
Sbjct: 136 LDMDKLNAACEKLVGTHDF 154
>gi|398784960|ref|ZP_10548081.1| tRNA pseudouridine synthase A [Streptomyces auratus AGR0001]
gi|396994850|gb|EJJ05877.1| tRNA pseudouridine synthase A [Streptomyces auratus AGR0001]
Length = 284
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 19/101 (18%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------- 256
P E ++ L+ L LP+D++V + P ++ARF ++R Y Y
Sbjct: 78 PAEVWAEHADKLLRRLAGRLPKDVRVWRVAEAPYGFNARFSAIWRRYAYRVTDHHGGVDP 137
Query: 257 -------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W LD+DAM++A++ L+G HDF CK G
Sbjct: 138 LLRSHVLWHDWE-LDVDAMNEASRPLLGEHDFAAYCKRREG 177
>gi|424855371|ref|ZP_18279676.1| tRNA pseudouridine synthase A [Enterococcus faecium R499]
gi|402931288|gb|EJX50875.1| tRNA pseudouridine synthase A [Enterococcus faecium R499]
Length = 246
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 18/79 (22%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF-----------------RNYKYWFPQAG 262
+ +N LPRDI + VPE++ +R++ + RN+ ++FPQ
Sbjct: 77 IDFMNRYLPRDIVIKRIEEVPERFHSRYNAVGKKYSYYVWNNVIPSAFERNHSFYFPQE- 135
Query: 263 LDIDAMHKAAQYLVGTHDF 281
LD+D ++ A + LVGTHDF
Sbjct: 136 LDMDKLNAACEKLVGTHDF 154
>gi|374611525|ref|ZP_09684311.1| tRNA pseudouridine synthase A [Mycobacterium tusciae JS617]
gi|373549235|gb|EHP75908.1| tRNA pseudouridine synthase A [Mycobacterium tusciae JS617]
Length = 289
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 32/130 (24%)
Query: 188 PHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 247
PHAY RT PG+ LP ++ L +P D++V+ + ARF
Sbjct: 83 PHAYPRT-----------ARPGQS---EFLPLVQRLARFIPTDVRVLDIGRAAPGFDARF 128
Query: 248 DCLFRNYKYWF--------PQAG---------LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
L R+Y Y PQ LD+DAM A++ L+G HDF C+ G
Sbjct: 129 SALRRHYAYRLSTAPYGVEPQEARFVTAWPRPLDVDAMAAASRDLLGLHDFAAFCRHRDG 188
Query: 291 NGVV-NFKRL 299
+ + +RL
Sbjct: 189 ATTIRDLQRL 198
>gi|114775677|ref|ZP_01451245.1| tRNA pseudouridine synthase A [Mariprofundus ferrooxydans PV-1]
gi|114553788|gb|EAU56169.1| tRNA pseudouridine synthase A [Mariprofundus ferrooxydans PV-1]
Length = 267
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 18/84 (21%)
Query: 218 PYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------WFPQ 260
YL N++LP +I+VV V + ARF C R+Y+Y W P+
Sbjct: 85 AYLHGCNSHLPDEIRVVGVRAVAADFHARFACRGRSYRYQIWNRNTASALQRWRHWWMPR 144
Query: 261 AGLDIDAMHKAAQYLVGTHDFRNL 284
+ L+I+AM AA + +G HDF L
Sbjct: 145 S-LNIEAMQGAAVHCLGRHDFSAL 167
>gi|296005181|ref|XP_001351959.2| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7]
gi|225631808|emb|CAD51770.2| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7]
Length = 312
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 230 DIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNV 289
+I + V + AR +C+ R Y Y+F +I+ M KAA+ +G HDF N CK
Sbjct: 99 NIHIHDIKHVSNTFDARLNCIQRTYVYFFINKNYNIEKMKKAAKLFIGEHDFSNCCKK-- 156
Query: 290 GNGVVNFKRLVTHAGVTSAWQNVQFNDIKEV 320
G V + +R V + + ++ + IK +
Sbjct: 157 GKNVTSNRRTVLKFDIRNIDKHFYYFKIKGI 187
>gi|441148629|ref|ZP_20964970.1| tRNA pseudouridine synthase A [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440619839|gb|ELQ82879.1| tRNA pseudouridine synthase A [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 279
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------- 256
P E ++ L+ L LP+D++V + P ++ARF ++R Y Y
Sbjct: 73 PAELWAEHADKLLRRLAGRLPKDVRVWRAADAPYGFNARFSAIWRRYAYRVTDHPGGVDP 132
Query: 257 ------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
+ LD++AM+ A+Q L+G HDF CK G
Sbjct: 133 LLRGHVLWHDWDLDVEAMNAASQALLGEHDFAAYCKRREG 172
>gi|85373239|ref|YP_457301.1| tRNA pseudouridine synthase A [Erythrobacter litoralis HTCC2594]
gi|123005078|sp|Q2NCT7.1|TRUA_ERYLH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|84786322|gb|ABC62504.1| tRNA pseudouridine synthase A [Erythrobacter litoralis HTCC2594]
Length = 247
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 20/105 (19%)
Query: 194 TPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNL-PRDIKVVAWSPVPEKYSARFDCLFR 252
T V L +RS + E+D + LN +L P I V +PE + ARF C+ R
Sbjct: 53 TGVHALGMRSHFDA---ETDLTPFRLMGGLNAHLRPHPIAVTNCEIMPEDWHARFACIGR 109
Query: 253 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDF 281
+Y Y W LD +AM +AAQ LVGTHDF
Sbjct: 110 SYVYRIINRRAPLTIDRKRAWQVPQQLDHEAMQRAAQLLVGTHDF 154
>gi|300776045|ref|ZP_07085904.1| tRNA-pseudouridine synthase I [Chryseobacterium gleum ATCC 35910]
gi|300505178|gb|EFK36317.1| tRNA-pseudouridine synthase I [Chryseobacterium gleum ATCC 35910]
Length = 250
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 210 EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW-------FPQA- 261
E+ D++LP + LN+ LP DI + PV + + ARFD +R Y+Y+ F Q
Sbjct: 73 EKELDDQLP--RRLNSFLPPDISIKRIFPVKDDFHARFDATYRTYEYYISLEKNPFTQES 130
Query: 262 -------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
LD+DAM++A + L DF + K+ N
Sbjct: 131 AWQHWKRSLDVDAMNEACKILFEYEDFTSFAKLKTDN 167
>gi|307595363|ref|YP_003901680.1| tRNA-pseudouridine synthase I [Vulcanisaeta distributa DSM 14429]
gi|307550564|gb|ADN50629.1| tRNA-pseudouridine synthase I [Vulcanisaeta distributa DSM 14429]
Length = 272
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 222 MLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDF 281
MLN+ LP I+ AW+ V E + AR + R Y Y P DID M AA+ VG HD
Sbjct: 73 MLNSRLPNGIRAWAWAEVDEGFRAR-AAVSRTYVYVMPWLYEDIDLMRSAAKLFVGVHDL 131
Query: 282 RNL 284
N
Sbjct: 132 SNF 134
>gi|302346677|ref|YP_003814975.1| tRNA pseudouridine synthase A [Prevotella melaninogenica ATCC
25845]
gi|302150885|gb|ADK97146.1| tRNA pseudouridine synthase A [Prevotella melaninogenica ATCC
25845]
Length = 253
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 19/92 (20%)
Query: 214 DNELPY-----LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA------- 261
D EL + + +N LPRD+ V PV E ARF R Y Y+
Sbjct: 65 DTELSFDCAQLVYKVNRLLPRDVSVSRIEPVGEDLHARFSATSRTYHYYVHTGKQPFSRQ 124
Query: 262 -------GLDIDAMHKAAQYLVGTHDFRNLCK 286
LD D M++AA YL+G DF+ CK
Sbjct: 125 YSCALHYSLDFDKMNEAAAYLIGEKDFKCFCK 156
>gi|381208363|ref|ZP_09915434.1| tRNA pseudouridine synthase A [Lentibacillus sp. Grbi]
Length = 248
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 41/90 (45%), Gaps = 20/90 (22%)
Query: 211 ESDDNELP--YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF----------------- 251
ESD N LP + + LN LP DI V VP + ARFD L
Sbjct: 66 ESDYNLLPADWKRALNAMLPSDIHVNEAEEVPASFHARFDVLEKEYRYYILNEPEPDVFK 125
Query: 252 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDF 281
RNY Y +P LDI M + +Y GTHDF
Sbjct: 126 RNYVYQYPYT-LDIAKMQETCKYFEGTHDF 154
>gi|240103716|ref|YP_002960025.1| tRNA pseudouridine synthase A [Thermococcus gammatolerans EJ3]
gi|259550472|sp|C5A7E9.1|TRUA_THEGJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|239911270|gb|ACS34161.1| tRNA-pseudouridine synthase A (truA) [Thermococcus gammatolerans
EJ3]
Length = 267
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDA 267
PGE +D L ++LN+NL D+ V+ + VP+ + RF + + Y+Y+ G +++
Sbjct: 69 PGERAD---LARPEVLNHNL-HDLWVLGVAEVPDDFHPRFWAISKTYRYYLIDEGFELEK 124
Query: 268 MHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVT 306
M A+ G HDF ++ G V R +TH +T
Sbjct: 125 MVGCAKLFEGRHDFSAFARLEPGRDPV---REITHISIT 160
>gi|374299433|ref|YP_005051072.1| tRNA pseudouridine synthase A [Desulfovibrio africanus str. Walvis
Bay]
gi|332552369|gb|EGJ49413.1| tRNA pseudouridine synthase A [Desulfovibrio africanus str. Walvis
Bay]
Length = 266
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 18/102 (17%)
Query: 217 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY--W------FPQ-------- 260
+P+ K +N LP D+ V VP ++ +RF + Y Y W PQ
Sbjct: 73 IPWRKAINALLPDDVCVTEVEVVPPEFHSRFSATSKVYAYTIWSELEFILPQRKPFVWRM 132
Query: 261 AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTH 302
AGL+ AM KA Q+ VG HDF++ NVG + + +R V
Sbjct: 133 AGLNQTAMDKAMQHFVGRHDFKSF--QNVGTPIRDTRRTVAR 172
>gi|316932092|ref|YP_004107074.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris DX-1]
gi|315599806|gb|ADU42341.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris DX-1]
Length = 245
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 17/76 (22%)
Query: 223 LNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDI 265
LN +L P + V+A VPE + ARF + R+Y+Y W LD
Sbjct: 79 LNAHLRPNPVAVLAAEIVPETFEARFSAVRRHYRYRIANRRSNLALDIGKVWRVPKPLDS 138
Query: 266 DAMHKAAQYLVGTHDF 281
DAMH+AAQ L+G HDF
Sbjct: 139 DAMHRAAQVLIGKHDF 154
>gi|225388793|ref|ZP_03758517.1| hypothetical protein CLOSTASPAR_02531 [Clostridium asparagiforme
DSM 15981]
gi|225045068|gb|EEG55314.1| hypothetical protein CLOSTASPAR_02531 [Clostridium asparagiforme
DSM 15981]
Length = 250
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY--------------WFPQAG--LDID 266
LN LP DI V+ + PE++ +R + + Y+Y +F G LDI
Sbjct: 79 LNRYLPEDICVLELTAAPERFHSRLNACRKTYRYQIWMDGKTDVFQRDYFYGLGKQLDIG 138
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M +AA L+GTHDF++ C
Sbjct: 139 QMERAAGTLLGTHDFKSFC 157
>gi|20089106|ref|NP_615181.1| tRNA pseudouridine synthase A [Methanosarcina acetivorans C2A]
gi|30913395|sp|Q8TU65.1|TRUA_METAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|19913971|gb|AAM03661.1| pseudouridylate synthase [Methanosarcina acetivorans C2A]
Length = 269
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 214 DNELPYL---KMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
D E P L +++N+ LP I A + VP + AR + R+Y Y DI M +
Sbjct: 68 DTEKPNLAIPRVINSELPPAIWAWAHAEVPYYFDARRSAVSRHYHYVMSGEDYDISKMRE 127
Query: 271 AAQYLVGTHDFRNLCKMN 288
A++ L+GTHDF N + N
Sbjct: 128 ASKLLLGTHDFENFSRSN 145
>gi|325969586|ref|YP_004245778.1| tRNA-pseudouridine synthase I [Vulcanisaeta moutnovskia 768-28]
gi|323708789|gb|ADY02276.1| tRNA-pseudouridine synthase I [Vulcanisaeta moutnovskia 768-28]
Length = 272
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 222 MLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDF 281
MLN+ LP I+V AW+ V + + AR + R Y Y P D+D M +A + VG HD
Sbjct: 73 MLNSRLPNGIRVWAWAEVSDDFHAR-AAVSRTYVYVMPWLYEDVDLMRRATELFVGVHDL 131
Query: 282 RNL 284
N
Sbjct: 132 SNF 134
>gi|254429312|ref|ZP_05043019.1| tRNA pseudouridine synthase A [Alcanivorax sp. DG881]
gi|196195481|gb|EDX90440.1| tRNA pseudouridine synthase A [Alcanivorax sp. DG881]
Length = 267
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 21/89 (23%)
Query: 214 DNELP-----YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG------ 262
D+E P ++ N NLPRD+ V +PV + + ARF + R Y+Y
Sbjct: 66 DSEAPREMKSWIMGANTNLPRDVTVRWATPVDDAFHARFSAVSRRYRYVIYNHARPPALF 125
Query: 263 ----------LDIDAMHKAAQYLVGTHDF 281
LD+ AM +AA YLVG HDF
Sbjct: 126 RNQVTWNYRPLDVAAMREAAAYLVGEHDF 154
>gi|315608004|ref|ZP_07882997.1| tRNA pseudouridine synthase A [Prevotella buccae ATCC 33574]
gi|315250473|gb|EFU30469.1| tRNA pseudouridine synthase A [Prevotella buccae ATCC 33574]
Length = 284
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 46/120 (38%), Gaps = 15/120 (12%)
Query: 187 DPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYL-KMLNNNLPRDIKVVAWSPVPEKYSA 245
D + R V T+ G+E+ D + P L LN LPRDI + PV + A
Sbjct: 75 DAGVHARLMVAHFDYEVGTTTEGQEAKDIDCPQLCYKLNRLLPRDISIRKIIPVAQDMHA 134
Query: 246 RFDCLFRNYKYWFPQA--------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
RF + R Y Y+ LD DAM + + L DF CK N
Sbjct: 135 RFSAVARTYHYYIHTGKMPFERHYSYQMPYALDFDAMREGCELLKRQTDFAAFCKAGADN 194
>gi|406663118|ref|ZP_11071190.1| tRNA pseudouridine synthase A [Cecembia lonarensis LW9]
gi|410030967|ref|ZP_11280797.1| pseudouridylate synthase I [Marinilabilia sp. AK2]
gi|405552850|gb|EKB48183.1| tRNA pseudouridine synthase A [Cecembia lonarensis LW9]
Length = 261
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 21/100 (21%)
Query: 205 LTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-------W 257
L SP E+ D +L+ +N NLP DI+++A VP ++ D ++ Y Y +
Sbjct: 71 LKSPLEQLD-----FLERVNANLPSDIRLLALQQVPHTFNIIQDIAWKEYHYHMAFGDKF 125
Query: 258 FPQAGL---------DIDAMHKAAQYLVGTHDFRNLCKMN 288
P AG D+ M K A+ VG HDFR C ++
Sbjct: 126 HPFAGANLSYFPGNPDLGLMQKGARAFVGRHDFRRFCAID 165
>gi|170720741|ref|YP_001748429.1| tRNA pseudouridine synthase A [Pseudomonas putida W619]
gi|169758744|gb|ACA72060.1| tRNA pseudouridine synthase A [Pseudomonas putida W619]
Length = 284
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 18/87 (20%)
Query: 212 SDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY--------------- 256
++ +E + N NLP DI VV P+P + ARF R Y+Y
Sbjct: 84 ANRDERAWTLGTNFNLPHDISVVWSRPMPADFHARFKATARRYRYVIYNDPIRPAHLAEE 143
Query: 257 --WFPQAGLDIDAMHKAAQYLVGTHDF 281
W + LD++ M AAQ+L+GTHDF
Sbjct: 144 VTWNHRP-LDVERMADAAQFLLGTHDF 169
>gi|145590498|ref|YP_001152500.1| tRNA pseudouridine synthase ACD [Pyrobaculum arsenaticum DSM 13514]
gi|166228752|sp|A4WHI1.1|TRUA_PYRAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|145282266|gb|ABP49848.1| Pseudouridylate synthase [Pyrobaculum arsenaticum DSM 13514]
Length = 257
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 202 RSKLTSPGEESDDN-----ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY 256
R T PG + N + +L +N+ LPR + + VPE ++ R R Y Y
Sbjct: 38 RGSRTDPGVSAVANVVMTSQRLHLGYVNSKLPRGVWAWGVAEVPEGFNPR-RAKARRYLY 96
Query: 257 WFPQAGLDIDAMHKAAQYLVGTHDFRNLCK 286
P G D++AM +AA LVGTHD+ + K
Sbjct: 97 VAPHWGEDVEAMREAAAVLVGTHDYSSFIK 126
>gi|222150476|ref|YP_002559629.1| tRNA pseudouridine synthase A [Macrococcus caseolyticus JCSC5402]
gi|222119598|dbj|BAH16933.1| tRNA pseudouridine synthase A [Macrococcus caseolyticus JCSC5402]
Length = 273
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA----------------GLDID 266
N+ LP DI + + + E + +R+DC+ + Y+Y A LD+
Sbjct: 79 FNSALPDDIYITQVTKISEHFHSRYDCIGKAYRYKVYVAEHRNVMHSGQITHIKTKLDVK 138
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M+ AAQ+ +GTHDF + C
Sbjct: 139 RMNDAAQHFLGTHDFTSFC 157
>gi|379748981|ref|YP_005339802.1| tRNA pseudouridine synthase A [Mycobacterium intracellulare ATCC
13950]
gi|378801345|gb|AFC45481.1| tRNA pseudouridine synthase A [Mycobacterium intracellulare ATCC
13950]
Length = 251
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 31/116 (26%)
Query: 188 PHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 247
P+AY R P V GE LP L+ L LP D++VV P + ARF
Sbjct: 46 PNAYSRAPHV-----------GEA---EFLPLLRRLGRFLPTDVRVVDIVRAPAGFDARF 91
Query: 248 DCLFRNYKYWFPQA-----------------GLDIDAMHKAAQYLVGTHDFRNLCK 286
L R+Y Y A LD++AM A++ L+G HDF C+
Sbjct: 92 SALRRHYVYRLSTAPWGVDPQQVRYVTAWPRPLDVEAMASASRDLLGLHDFAAFCR 147
>gi|118101049|ref|XP_417580.2| PREDICTED: pseudouridylate synthase-like 1 [Gallus gallus]
Length = 291
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 22/88 (25%)
Query: 223 LNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYKY--------------------WFPQA 261
LN++L P I++++ V + ARF L R Y Y W P
Sbjct: 92 LNHHLKPEPIRILSAYRVTNNFHARFSALSRTYIYRLLMGCTHHSEIPVFERDLCWAPPG 151
Query: 262 G-LDIDAMHKAAQYLVGTHDFRNLCKMN 288
G L++ AM AAQ+L+GTHDF C +N
Sbjct: 152 GYLNVPAMQDAAQFLLGTHDFSTFCSLN 179
>gi|384564392|ref|ZP_10011496.1| pseudouridylate synthase I [Saccharomonospora glauca K62]
gi|384520246|gb|EIE97441.1| pseudouridylate synthase I [Saccharomonospora glauca K62]
Length = 308
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG-----------------LDI 265
LN LP D++V+ S P + ARF R+Y+Y A L +
Sbjct: 116 LNRLLPADVRVLRISRAPAGFDARFSAAKRHYRYKVSDAPWGVSPLQRRDTLAWARPLSV 175
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVG 290
DAM++AA L+G HDF CK G
Sbjct: 176 DAMNEAASALLGLHDFAAFCKQREG 200
>gi|386383936|ref|ZP_10069360.1| tRNA pseudouridine synthase A [Streptomyces tsukubaensis NRRL18488]
gi|385668601|gb|EIF91920.1| tRNA pseudouridine synthase A [Streptomyces tsukubaensis NRRL18488]
Length = 293
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 23/91 (25%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------W--FP 259
LK L L RD+++ P + ARF ++R Y Y W +P
Sbjct: 93 LKRLAGRLSRDVRIRRAEEAPAGFDARFSAIWRRYAYRISDHPSGVDPLLRGHVLWHDWP 152
Query: 260 QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD+DAM++A++ L+G HDF CK G
Sbjct: 153 ---LDVDAMNEASRGLLGEHDFAAYCKRREG 180
>gi|256390175|ref|YP_003111739.1| tRNA pseudouridine synthase A [Catenulispora acidiphila DSM 44928]
gi|256356401|gb|ACU69898.1| tRNA pseudouridine synthase A [Catenulispora acidiphila DSM 44928]
Length = 284
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 19/106 (17%)
Query: 203 SKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------ 256
+ L P E ++E L+ L LP D++V + P P + ARF + R Y Y
Sbjct: 70 AHLDVPLELWAEHEERLLRRLAAVLPGDVRVWSAVPAPVGFDARFAAMGRRYAYRVTDAA 129
Query: 257 ------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W P+ LD M++AA L+G HDF + CK G
Sbjct: 130 YGPHPLRRNDVTWHPRT-LDPALMNEAAAALLGEHDFASFCKKREG 174
>gi|332798239|ref|YP_004459738.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
gi|332695974|gb|AEE90431.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
Length = 243
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 20/90 (22%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF-----------------DCLFRNYKYWF 258
+LPY +N+ LP DI V VPE + ARF L + Y Y++
Sbjct: 73 KLPY--AINSKLPEDIVVKHAEIVPEDFHARFWAKAKIYTYTIYNAKFPSPLLKRYSYFY 130
Query: 259 PQAGLDIDAMHKAAQYLVGTHDFRNLCKMN 288
P+ L++ AM KAA L+GTHDF + N
Sbjct: 131 PRP-LNVRAMKKAADMLIGTHDFASFMASN 159
>gi|438001157|ref|YP_007270900.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
gi|432177951|emb|CCP24924.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
Length = 256
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 20/90 (22%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF-----------------DCLFRNYKYWF 258
+LPY +N+ LP DI V VPE + ARF L + Y Y++
Sbjct: 86 KLPY--AINSKLPEDIVVKHAEIVPEDFHARFWAKAKIYTYTIYNAKFPSPLLKRYSYFY 143
Query: 259 PQAGLDIDAMHKAAQYLVGTHDFRNLCKMN 288
P+ L++ AM KAA L+GTHDF + N
Sbjct: 144 PRP-LNVRAMKKAADMLIGTHDFASFMASN 172
>gi|15678860|ref|NP_275977.1| tRNA pseudouridine synthase A [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3915162|sp|O26928.1|TRUA_METTH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|2621931|gb|AAB85338.1| pseudouridylate synthase I [Methanothermobacter thermautotrophicus
str. Delta H]
Length = 275
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF-PQAGLDIDAMHKAAQYLVG 277
++ +N+ LPRDI+V+AW+ V + R+ L R+Y+Y + +D +M +AA + G
Sbjct: 75 HVNQINDLLPRDIRVLAWASVMYPFKVRY-PLERHYRYILHREESMDTYSMAEAAAHFRG 133
Query: 278 THDFRNLCK 286
THDF N +
Sbjct: 134 THDFSNFSR 142
>gi|456013300|gb|EMF46959.1| tRNA pseudouridine synthase A [Planococcus halocryophilus Or1]
Length = 247
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 16/86 (18%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG---------------- 262
+LK LN LP DI+V + V + AR+ + Y+Y + ++
Sbjct: 76 WLKALNVLLPEDIRVNSIEEVDTSFHARYHTTGKTYRYKWDRSQIISPFTRSLMVHVKQP 135
Query: 263 LDIDAMHKAAQYLVGTHDFRNLCKMN 288
L+++AM A+Q ++GTHDF + C N
Sbjct: 136 LNVEAMKNASQAIIGTHDFSSFCAAN 161
>gi|379005192|ref|YP_005260864.1| Pseudouridylate synthase [Pyrobaculum oguniense TE7]
gi|375160645|gb|AFA40257.1| Pseudouridylate synthase [Pyrobaculum oguniense TE7]
Length = 257
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 192 IRTPVVTLKIRSKLTSPGEESDDN-----ELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
+R + + R T PG + N + +L +N+ LPR + + VPE ++ R
Sbjct: 28 LRAALGEILGRGSRTDPGVSAVANVVMTSQRLHLGYVNSKLPRGVWAWGVAEVPEGFNPR 87
Query: 247 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCK 286
R Y Y P G D++AM +AA LVGTHD+ + K
Sbjct: 88 -RAKARRYLYVAPHWGEDVEAMREAAAVLVGTHDYSSFIK 126
>gi|338737489|ref|YP_004674451.1| tRNA pseudouridine synthase A [Hyphomicrobium sp. MC1]
gi|337758052|emb|CCB63875.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I) [Hyphomicrobium sp. MC1]
Length = 266
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 25/96 (26%)
Query: 203 SKLTSPGEESDDNELPYLKMLNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYKY----- 256
SK SPG D +N +L P I +VA + V ++ ARF + R+YKY
Sbjct: 67 SKEWSPGRVRD--------AMNFHLRPHPIGIVACAAVDAEFDARFSAIKRHYKYRLLTR 118
Query: 257 -----------WFPQAGLDIDAMHKAAQYLVGTHDF 281
W+ LD AMH+AAQ LVG HDF
Sbjct: 119 RAPPILDRNRVWWTMQELDAGAMHEAAQVLVGKHDF 154
>gi|253999257|ref|YP_003051320.1| tRNA pseudouridine synthase A [Methylovorus glucosetrophus SIP3-4]
gi|253985936|gb|ACT50793.1| tRNA pseudouridine synthase A [Methylovorus glucosetrophus SIP3-4]
Length = 261
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 39/155 (25%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------WFPQA 261
+++ +N LP ++V+ V +++ ARF R Y+Y WF Q+
Sbjct: 74 WVRGVNAGLPSSVRVLWAQQVDDEFHARFSARQRYYQYILFDQAVAPAILAGKVGWFHQS 133
Query: 262 GLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGVVNFKRLVTHAGVTSAWQNVQF--- 314
LD+DAM +AA +L+G HDF C+ + R + A V A Q + F
Sbjct: 134 -LDVDAMAEAAAHLIGEHDFSAFRAAECQAK------SPIRTLQQAEVRRAGQAILFEFS 186
Query: 315 ------NDIKEVVDSEPSFKKGQGNEKPEIIQQLV 343
+ ++ +V + G+G++ P IQQL+
Sbjct: 187 GNAFLHHQVRNMVGA--LVYVGKGSQPPAFIQQLL 219
>gi|183981112|ref|YP_001849403.1| tRNA pseudouridine synthase A [Mycobacterium marinum M]
gi|443489583|ref|YP_007367730.1| pseudouridine synthase a, TruA [Mycobacterium liflandii 128FXT]
gi|183174438|gb|ACC39548.1| pseudouridine synthase a, TruA [Mycobacterium marinum M]
gi|442582080|gb|AGC61223.1| pseudouridine synthase a, TruA [Mycobacterium liflandii 128FXT]
Length = 237
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 209 GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--------PQ 260
D LP ++ L LP D++V+ + P + ARF L R+Y Y PQ
Sbjct: 37 ARAGDPEFLPLVRRLARFLPADLRVLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQ 96
Query: 261 AG---------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV-NFKRL 299
LDIDAM A++ L+G H+F C+ G + + +RL
Sbjct: 97 QARYVTVWPRELDIDAMTVASRELLGLHNFAAFCRRREGATTIRDLQRL 145
>gi|419717695|ref|ZP_14245070.1| tRNA pseudouridine synthase A [Mycobacterium abscessus M94]
gi|382937576|gb|EIC61925.1| tRNA pseudouridine synthase A [Mycobacterium abscessus M94]
Length = 294
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 190 AYIRTPVVTL-KIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 248
A++ PV L +R + G D ++ L+ LP D++V+ S P + ARF
Sbjct: 76 AHLDVPVACLPGLRGRYRPAGAPEFDR---LVRRLSRFLPSDVRVLDISRAPAHFDARFS 132
Query: 249 CLFRNYKYWFPQAG-----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
L R+Y+Y A LD+DAM++A++ L+G DF C+ G
Sbjct: 133 ALRRHYEYRLSTASFGVLPLARHDVVGWHRPLDVDAMNEASRNLLGLRDFAAFCRHREG 191
>gi|373455492|ref|ZP_09547324.1| tRNA pseudouridine synthase A [Dialister succinatiphilus YIT 11850]
gi|371934851|gb|EHO62628.1| tRNA pseudouridine synthase A [Dialister succinatiphilus YIT 11850]
Length = 244
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 20/86 (23%)
Query: 220 LKML----NNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFP 259
LKML N LP DI + + E++ +RF + ++Y+Y W
Sbjct: 72 LKMLQDAWNRALPDDISIHGLAIRDERFHSRFSAVEKHYRYCIRVGAEKNVFRRRYVWQL 131
Query: 260 QAGLDIDAMHKAAQYLVGTHDFRNLC 285
LD++AM + A +L GTHDF + C
Sbjct: 132 GEALDVEAMRRGAAFLTGTHDFTSFC 157
>gi|427391393|ref|ZP_18885799.1| tRNA pseudouridine synthase A [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425732036|gb|EKU94848.1| tRNA pseudouridine synthase A [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 353
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 16/77 (20%)
Query: 230 DIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDIDAMHKAAQ 273
D+ V VP + ARF L R Y Y W P LD++AM+ AAQ
Sbjct: 116 DVAVQKIEQVPGDFDARFSALAREYTYRIATHDFDPLRRHDVLWLPGQRLDVEAMNAAAQ 175
Query: 274 YLVGTHDFRNLCKMNVG 290
L+G H+F + C+ G
Sbjct: 176 QLLGEHNFLSYCRPREG 192
>gi|419708929|ref|ZP_14236397.1| tRNA pseudouridine synthase A [Mycobacterium abscessus M93]
gi|382942810|gb|EIC67124.1| tRNA pseudouridine synthase A [Mycobacterium abscessus M93]
Length = 294
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 190 AYIRTPVVTL-KIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 248
A++ PV L +R + G D ++ L+ LP D++V+ S P + ARF
Sbjct: 76 AHLDVPVACLPGLRGRYRPAGAPEFDR---LVRRLSRFLPSDVRVLDISRAPAHFDARFS 132
Query: 249 CLFRNYKYWFPQAG-----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
L R+Y+Y A LD+DAM++A++ L+G DF C+ G
Sbjct: 133 ALRRHYEYRLSTASFGVLPLARHDVVGWHRPLDVDAMNEASRNLLGLRDFAAFCRHREG 191
>gi|169630847|ref|YP_001704496.1| tRNA pseudouridine synthase A [Mycobacterium abscessus ATCC 19977]
gi|420911403|ref|ZP_15374715.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0125-R]
gi|420928684|ref|ZP_15391964.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-1108]
gi|420979026|ref|ZP_15442203.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0212]
gi|420984409|ref|ZP_15447576.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0728-R]
gi|421014460|ref|ZP_15477536.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0122-R]
gi|421030355|ref|ZP_15493386.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0930-R]
gi|421035707|ref|ZP_15498725.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0930-S]
gi|169242814|emb|CAM63842.1| tRNA pseudouridine synthase A [Mycobacterium abscessus]
gi|392113397|gb|EIU39166.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0125-R]
gi|392129802|gb|EIU55549.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-1108]
gi|392163304|gb|EIU88993.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0212]
gi|392169405|gb|EIU95083.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0728-R]
gi|392198737|gb|EIV24348.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0122-R]
gi|392223575|gb|EIV49097.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0930-R]
gi|392224202|gb|EIV49723.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0930-S]
Length = 294
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 190 AYIRTPVVTL-KIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 248
A++ PV L +R + G D ++ L+ LP D++V+ S P + ARF
Sbjct: 76 AHLDVPVACLPGLRGRYRPAGAPEFDR---LVRRLSRFLPSDVRVLDISRAPAHFDARFS 132
Query: 249 CLFRNYKYWFPQAG-----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
L R+Y+Y A LD+DAM++A++ L+G DF C+ G
Sbjct: 133 ALRRHYEYRLSTASFGVLPLARHDVVGWHRPLDVDAMNEASRNLLGLRDFAAFCRHREG 191
>gi|254819223|ref|ZP_05224224.1| tRNA pseudouridine synthase A [Mycobacterium intracellulare ATCC
13950]
gi|379756297|ref|YP_005344969.1| tRNA pseudouridine synthase A [Mycobacterium intracellulare
MOTT-02]
gi|378806513|gb|AFC50648.1| tRNA pseudouridine synthase A [Mycobacterium intracellulare
MOTT-02]
Length = 251
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 31/116 (26%)
Query: 188 PHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 247
P+AY R P V GE LP L+ L LP D++VV P + ARF
Sbjct: 46 PNAYSRAPHV-----------GEA---EFLPLLRRLGRFLPTDVRVVDIVRAPAGFDARF 91
Query: 248 DCLFRNYKYWFPQA-----------------GLDIDAMHKAAQYLVGTHDFRNLCK 286
L R+Y Y A LD++AM A++ L+G HDF C+
Sbjct: 92 SALRRHYVYRLSTAPWGVDPQQVRYVTAWPRPLDVEAMATASRDLLGLHDFAAFCR 147
>gi|384551005|ref|YP_005740257.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302333855|gb|ADL24048.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 267
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+D
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLD 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ GTHDF C
Sbjct: 138 KMNRAAQQFKGTHDFTGFC 156
>gi|269976928|ref|ZP_06183902.1| tRNA pseudouridine synthase A [Mobiluncus mulieris 28-1]
gi|269934759|gb|EEZ91319.1| tRNA pseudouridine synthase A [Mobiluncus mulieris 28-1]
Length = 326
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 22/102 (21%)
Query: 206 TSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY--------- 256
T PG DD + Y N I V PVP+ + ARF L R+Y+Y
Sbjct: 126 TIPGLNLDDQPI-YPPEANGA----IVVTTARPVPDAFDARFSALARHYEYLVIDEPTAR 180
Query: 257 --------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W+ A L++ MH+A+ L+GTHDF CK G
Sbjct: 181 NPLTRNTCWWYGAPLNVARMHEASAGLLGTHDFAAFCKPREG 222
>gi|383786162|ref|YP_005470731.1| pseudouridylate synthase I [Fervidobacterium pennivorans DSM 9078]
gi|383109009|gb|AFG34612.1| pseudouridylate synthase I [Fervidobacterium pennivorans DSM 9078]
Length = 246
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 20/96 (20%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF-----------------DCL 250
P ++ +N++ LN NLP+DI V E ++ R+ D
Sbjct: 67 PNDKLTENDIR--NALNANLPKDIYVKKVWFASENFNPRYEAKRRIYHYYILNSKMNDIF 124
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCK 286
R Y +WFP LDI M A+YL+GTHDF K
Sbjct: 125 LRRYAWWFPYE-LDIARMRAGAEYLIGTHDFTAFSK 159
>gi|291522074|emb|CBK80367.1| pseudouridylate synthase I [Coprococcus catus GD/7]
Length = 247
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 18/86 (20%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD----------------CLFRNYKYWFP 259
E+ Y LN LP DI V VPE++ +R++ C+F W+
Sbjct: 77 EMKYY--LNRYLPGDIAVNRVDDVPERFHSRYNAKAKKYLYRIAIGDVPCVFDRKYTWYC 134
Query: 260 QAGLDIDAMHKAAQYLVGTHDFRNLC 285
LD+ AM KAA LVG HDF+ C
Sbjct: 135 FDKLDVTAMKKAAALLVGEHDFKAFC 160
>gi|389573482|ref|ZP_10163556.1| tRNA pseudouridine synthase A [Bacillus sp. M 2-6]
gi|388426797|gb|EIL84608.1| tRNA pseudouridine synthase A [Bacillus sp. M 2-6]
Length = 247
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 18/83 (21%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------WFPQAGLDI 265
LN+ LP DI+V+ V E + ARF + + Y+Y FP LD
Sbjct: 80 LNSLLPDDIRVLKAEEVDESFHARFSVVSKEYRYKVSTETHQNVFTRQYACHFPYR-LDA 138
Query: 266 DAMHKAAQYLVGTHDFRNLCKMN 288
D M +AA +L+G HDF + C N
Sbjct: 139 DKMREAAGHLIGIHDFTSFCAAN 161
>gi|228995804|ref|ZP_04155464.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock3-17]
gi|229003424|ref|ZP_04161244.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock1-4]
gi|228757802|gb|EEM07027.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock1-4]
gi|228763965|gb|EEM12852.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock3-17]
Length = 245
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 19/87 (21%)
Query: 214 DNELPYLKM---LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY--WFPQ-------- 260
D LP LK+ LN LP DI + V E++ AR++ + Y Y W +
Sbjct: 68 DENLPELKVKKYLNQYLPNDISITDVELVSERFHARYNSKSKTYLYKIWNEEHTNPFMRK 127
Query: 261 ------AGLDIDAMHKAAQYLVGTHDF 281
L+I+ M KAAQYL+G+HDF
Sbjct: 128 YSMHVGKKLNIENMQKAAQYLIGSHDF 154
>gi|192289057|ref|YP_001989662.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris TIE-1]
gi|192282806|gb|ACE99186.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris TIE-1]
Length = 245
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 17/76 (22%)
Query: 223 LNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDI 265
LN +L P + V+A VP+ + ARF + R+Y+Y W LD
Sbjct: 79 LNAHLRPNPVAVLAAEIVPDTFEARFSAVRRHYRYRIANRRSNLALDLGKVWRVPKQLDT 138
Query: 266 DAMHKAAQYLVGTHDF 281
DAMH+AAQ L+G HDF
Sbjct: 139 DAMHRAAQVLIGKHDF 154
>gi|153816265|ref|ZP_01968933.1| hypothetical protein RUMTOR_02514 [Ruminococcus torques ATCC 27756]
gi|317501758|ref|ZP_07959944.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088721|ref|ZP_08337631.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA]
gi|336439604|ref|ZP_08619215.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 1_1_57FAA]
gi|145846448|gb|EDK23366.1| tRNA pseudouridine synthase A [Ruminococcus torques ATCC 27756]
gi|316896791|gb|EFV18876.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407244|gb|EGG86747.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA]
gi|336015833|gb|EGN45635.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 1_1_57FAA]
Length = 271
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDID 266
+N LP DI VV V + R+ + Y+Y WF LDID
Sbjct: 79 VNALLPDDIVVVRSEEVGCDWHPRYQNSIKTYEYTIVNREMPDPLRRRDSWFVSFPLDID 138
Query: 267 AMHKAAQYLVGTHDFRNLCKMNVG 290
M KAA+Y +G HDF+ C ++ G
Sbjct: 139 DMKKAARYFIGEHDFKTFCSVHTG 162
>gi|104780847|ref|YP_607345.1| tRNA pseudouridine synthase A [Pseudomonas entomophila L48]
gi|95109834|emb|CAK14539.1| tRNA-pseudouridine synthase I [Pseudomonas entomophila L48]
Length = 284
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 215 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------W 257
+E + N NLP DI VV +P+P + ARF R Y+Y W
Sbjct: 87 DERAWTLGTNFNLPHDISVVWSAPMPAHFHARFKATARRYRYVIYNDPIRPAHLAEEVTW 146
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDF 281
+ LD+ M +AA+YL+GTHDF
Sbjct: 147 NHRP-LDVTRMAEAARYLLGTHDF 169
>gi|365134480|ref|ZP_09343306.1| tRNA pseudouridine synthase A [Subdoligranulum sp. 4_3_54A2FAA]
gi|363614056|gb|EHL65559.1| tRNA pseudouridine synthase A [Subdoligranulum sp. 4_3_54A2FAA]
Length = 262
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDID 266
+N LP D++V VPE + AR+ + Y Y W LD
Sbjct: 78 VNRFLPDDVRVTEAHRVPEDFHARYSAKSKEYIYRIHNSAVADPFQNGLCWRFPGPLDAG 137
Query: 267 AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFN 315
M +AAQYLVG HDF + M+ G+ + + R V A V ++ F+
Sbjct: 138 RMERAAQYLVGKHDFVSF--MSSGSDIADTVRTVYFAHVRREGDDITFH 184
>gi|420917860|ref|ZP_15381163.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0125-S]
gi|420923025|ref|ZP_15386321.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0728-S]
gi|420968293|ref|ZP_15431497.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0810-R]
gi|421008867|ref|ZP_15471977.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0119-R]
gi|421019324|ref|ZP_15482381.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0122-S]
gi|421024626|ref|ZP_15487670.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0731]
gi|392110751|gb|EIU36521.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0125-S]
gi|392127678|gb|EIU53428.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0728-S]
gi|392197015|gb|EIV22631.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0119-R]
gi|392207954|gb|EIV33531.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0122-S]
gi|392211423|gb|EIV36989.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0731]
gi|392250800|gb|EIV76274.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0810-R]
Length = 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 190 AYIRTPVVTL-KIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 248
A++ PV L +R + G D ++ L+ LP D++V+ S P + ARF
Sbjct: 59 AHLDVPVACLPGLRGRYRPAGAPEFDR---LVRRLSRFLPSDVRVLDISRAPAHFDARFS 115
Query: 249 CLFRNYKYWFPQAG-----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
L R+Y+Y A LD+DAM++A++ L+G DF C+ G
Sbjct: 116 ALRRHYEYRLSTASFGVLPLARHDVVGWHRPLDVDAMNEASRNLLGLRDFAAFCRHREG 174
>gi|442803780|ref|YP_007371929.1| tRNA pseudouridine synthase A [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442739630|gb|AGC67319.1| tRNA pseudouridine synthase A [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 266
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 18/95 (18%)
Query: 222 MLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDI 265
+LN LP I V++ V + ARF + + YKY W LDI
Sbjct: 80 VLNTVLPPSIAVISSKEVSPDFHARFSAIKKTYKYKVLNRPMRSPIMDKRAWHVPWPLDI 139
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLV 300
++M++AA Y +G HDF C G+ V NF R +
Sbjct: 140 ESMNRAAAYFIGRHDFTAFCAS--GHNVKNFVREI 172
>gi|223042638|ref|ZP_03612687.1| tRNA pseudouridine synthase A [Staphylococcus capitis SK14]
gi|417906292|ref|ZP_12550083.1| tRNA pseudouridine synthase A [Staphylococcus capitis VCU116]
gi|222444301|gb|EEE50397.1| tRNA pseudouridine synthase A [Staphylococcus capitis SK14]
gi|341598162|gb|EGS40679.1| tRNA pseudouridine synthase A [Staphylococcus capitis VCU116]
Length = 267
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDID 266
+N LP DI V V E + R+DC+ + Y+Y F + LD+
Sbjct: 78 MNRFLPDDIYVKNVQTVEENFHCRYDCVGKRYRYKVYQGEHRNPFKSGLETFINSDLDLS 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AA + +GTHDF C
Sbjct: 138 KMNEAAHHFIGTHDFTGFC 156
>gi|326390628|ref|ZP_08212183.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus JW
200]
gi|325993306|gb|EGD51743.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus JW
200]
Length = 244
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 25/133 (18%)
Query: 165 ILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLN 224
+LQ +K+ + D + V K +K+ P E+ LPY LN
Sbjct: 30 VLQKAIKKVTGEEVNLIGASRTDTGVHALYQVANFKTNTKI--PAEK-----LPY--ALN 80
Query: 225 NNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDIDAM 268
+ LP DI VV V + + AR+ + YKY W L I+ M
Sbjct: 81 SVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFQMPTMRNYCWHIDYPLSIEKM 140
Query: 269 HKAAQYLVGTHDF 281
KAA YL+GTHDF
Sbjct: 141 KKAASYLIGTHDF 153
>gi|242371866|ref|ZP_04817440.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis
M23864:W1]
gi|242350373|gb|EES41974.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis
M23864:W1]
Length = 267
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V + V E + R+DC+ + Y+Y Q LD+
Sbjct: 78 MNRFLPNDIYVKSVQTVDENFHCRYDCVGKRYRYKVYQGAHRDPFKSGLETFIDNDLDLA 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AA + +GTHDF C
Sbjct: 138 KMNEAAHHFIGTHDFTGFC 156
>gi|422347433|ref|ZP_16428345.1| tRNA pseudouridine synthase A 2 [Clostridium perfringens WAL-14572]
gi|422875317|ref|ZP_16921802.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
gi|373224731|gb|EHP47068.1| tRNA pseudouridine synthase A 2 [Clostridium perfringens WAL-14572]
gi|380303847|gb|EIA16143.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
Length = 244
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 31/148 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARF-----------------DCLFRNYKYWFPQAGLDI 265
LN+ LP+DI ++ V E + AR+ L RNY Y + LD+
Sbjct: 79 LNSKLPKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNREEPPALERNYVYHVKKQ-LDV 137
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ---------FND 316
++M +A +Y +G HDF+ + G V R +T + + ++ +N
Sbjct: 138 ESMKEACKYFLGKHDFKAFQRP--GGTVKTSVRTITDIHIETEGNKIKIYVSADGFLYNM 195
Query: 317 IKEVVDSEPSFKKGQGNEKPEIIQQLVD 344
++ +V + K G+G EK E I++++D
Sbjct: 196 VRLIVGT--LLKVGRGKEKAEYIKEVID 221
>gi|257054500|ref|YP_003132332.1| pseudouridylate synthase I [Saccharomonospora viridis DSM 43017]
gi|256584372|gb|ACU95505.1| pseudouridylate synthase I [Saccharomonospora viridis DSM 43017]
Length = 300
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 17/85 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG-----------------LDI 265
LN LP D++V++ P + ARF + R+Y+Y A L +
Sbjct: 110 LNRVLPADVRVLSIRRAPAGFDARFSAVKRHYRYQVSDAPWGVSPLRRRDTLAWPRPLSV 169
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVG 290
DAM++AA L+G HDF CK G
Sbjct: 170 DAMNEAASSLLGLHDFAAFCKRREG 194
>gi|225376773|ref|ZP_03753994.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM
16841]
gi|225211399|gb|EEG93753.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM
16841]
Length = 247
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDID 266
LN LP DI V VP + R+ + Y+Y +F LD+D
Sbjct: 79 LNQRLPEDIVVQDSCEVPSDWHPRYQVSRKTYEYRILNRTFRMPNRRLDTYFYHHKLDVD 138
Query: 267 AMHKAAQYLVGTHDFRNLCKMN 288
M +AA YLVG HDF++ C +
Sbjct: 139 KMKQAASYLVGEHDFKSFCAVG 160
>gi|345018501|ref|YP_004820854.1| tRNA pseudouridine synthase A [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033844|gb|AEM79570.1| tRNA pseudouridine synthase A [Thermoanaerobacter wiegelii Rt8.B1]
Length = 244
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 18/82 (21%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFP 259
+LPY LN+ LP DI VV V + + AR+ + YKY W
Sbjct: 74 KLPY--ALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFPMPTMRNYCWHI 131
Query: 260 QAGLDIDAMHKAAQYLVGTHDF 281
L I+ M KAA YL+GTHDF
Sbjct: 132 SYPLSIEKMKKAASYLIGTHDF 153
>gi|408828940|ref|ZP_11213830.1| tRNA pseudouridine synthase A [Streptomyces somaliensis DSM 40738]
Length = 283
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 208 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------- 256
PGE ++ L+ L L D++V P ++ARF ++R Y Y
Sbjct: 74 PGEVWAEHRDKLLRRLAGRLAHDVRVWRVEEAPPGFNARFSAVWRRYAYRVTDNPGGVDP 133
Query: 257 -------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
W LD+DAM+ AA+ L+G HDF CK G
Sbjct: 134 LLRGHVLWHDWP-LDVDAMNAAAERLLGEHDFAAYCKRRDG 173
>gi|387133188|ref|YP_006299160.1| tRNA pseudouridine(38-40) synthase [Prevotella intermedia 17]
gi|386376036|gb|AFJ08801.1| tRNA pseudouridine(38-40) synthase [Prevotella intermedia 17]
Length = 257
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 209 GEESDD-NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA------ 261
G+E D +L Y LN LPRD+ V A V + ARF R Y Y+
Sbjct: 66 GQEGIDCKQLAY--KLNRLLPRDVAVTAVFAVDSELHARFSATSRTYHYYIHHGRNPFLR 123
Query: 262 --------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
LD + M++AA YLVG DF+ CK N
Sbjct: 124 AYSCEMPYALDYERMNEAASYLVGERDFKCFCKAGGDN 161
>gi|394989212|ref|ZP_10382046.1| hypothetical protein SCD_01631 [Sulfuricella denitrificans skB26]
gi|393791631|dbj|GAB71685.1| hypothetical protein SCD_01631 [Sulfuricella denitrificans skB26]
Length = 261
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 18/80 (22%)
Query: 219 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-----------------WFPQA 261
+++ +N LP + V+ PV +++ ARF + R+Y+Y WF Q
Sbjct: 74 WVRGVNALLPDSVGVLWAQPVSDEFHARFSAVSRSYRYLLLNHPVRPVLLSGKVGWFHQP 133
Query: 262 GLDIDAMHKAAQYLVGTHDF 281
LD++AM + AQ+L+G HDF
Sbjct: 134 -LDVEAMRQGAQFLLGEHDF 152
>gi|398999852|ref|ZP_10702585.1| pseudouridylate synthase I [Pseudomonas sp. GM18]
gi|398130906|gb|EJM20235.1| pseudouridylate synthase I [Pseudomonas sp. GM18]
Length = 284
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 20/76 (26%)
Query: 224 NNNLPRDIKVVAWSPV-PEKYSARFDCLFRNYKY-----------------WFPQAGLDI 265
N NLP DI V +W+ V P + ARF + R Y+Y W + LD+
Sbjct: 96 NINLPHDISV-SWAKVMPAHFHARFKAIARRYRYVIYNDQIRPAHLNEEVTWNHRP-LDV 153
Query: 266 DAMHKAAQYLVGTHDF 281
+ M +AAQYLVGTHDF
Sbjct: 154 ERMSEAAQYLVGTHDF 169
>gi|392939543|ref|ZP_10305187.1| pseudouridylate synthase I [Thermoanaerobacter siderophilus SR4]
gi|392291293|gb|EIV99736.1| pseudouridylate synthase I [Thermoanaerobacter siderophilus SR4]
Length = 244
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 18/82 (21%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFP 259
+LPY LN+ LP DI VV V + + AR+ + YKY W
Sbjct: 74 KLPY--ALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFPMPTMRNYCWHI 131
Query: 260 QAGLDIDAMHKAAQYLVGTHDF 281
L+I+ M KAA YL+GTHDF
Sbjct: 132 GYPLNIEEMKKAASYLIGTHDF 153
>gi|269128483|ref|YP_003301853.1| tRNA pseudouridine synthase A [Thermomonospora curvata DSM 43183]
gi|268313441|gb|ACY99815.1| tRNA pseudouridine synthase A [Thermomonospora curvata DSM 43183]
Length = 288
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 21/98 (21%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------WFPQAGLD 264
L LP D++V + P + ARF L+R Y Y W P+ LD
Sbjct: 89 LAGLLPPDVRVWRIAVAPRGFDARFSALWRRYVYRVCDREAGVDPLRRREVLWHPRP-LD 147
Query: 265 IDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTH 302
+D M++AA L+G HDF C+ G +RL+ +
Sbjct: 148 LDRMNEAAARLLGEHDFAAFCRRR--EGATTIRRLLRY 183
>gi|451947437|ref|YP_007468032.1| pseudouridylate synthase I [Desulfocapsa sulfexigens DSM 10523]
gi|451906785|gb|AGF78379.1| pseudouridylate synthase I [Desulfocapsa sulfexigens DSM 10523]
Length = 261
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 14/75 (18%)
Query: 221 KMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY--------------WFPQAGLDID 266
+ LN LP+DI V + ++ AR +C+ R+Y Y W+ QA LD+
Sbjct: 84 RKLNETLPKDIAVRSVEAAGARFHARHNCIARSYVYQIRTEKSAFGKRYDWWVQADLDLP 143
Query: 267 AMHKAAQYLVGTHDF 281
AM A + G HDF
Sbjct: 144 AMQHAGSLMTGMHDF 158
>gi|315925222|ref|ZP_07921436.1| tRNA pseudouridine synthase A [Pseudoramibacter alactolyticus ATCC
23263]
gi|315621456|gb|EFV01423.1| tRNA pseudouridine synthase A [Pseudoramibacter alactolyticus ATCC
23263]
Length = 249
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDID 266
LN +LPRDI++ VP + +R+ + Y Y W + L++D
Sbjct: 79 LNAHLPRDIRIQKSFEVPADFHSRYGAKEKTYCYRVWAAPVADPLTDDFCWHVRFPLNVD 138
Query: 267 AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFN 315
AM + A LVGTHDF+ M G+G R + G+ + + F
Sbjct: 139 AMRRGAAVLVGTHDFKTF--MASGSGAKTTVRRIDAIGIEQKGRMITFT 185
>gi|386820727|ref|ZP_10107943.1| pseudouridylate synthase I [Joostella marina DSM 19592]
gi|386425833|gb|EIJ39663.1| pseudouridylate synthase I [Joostella marina DSM 19592]
Length = 250
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 14/80 (17%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW--------------FPQAGLDIDAM 268
LN+ LP DI + V ++ ARFD R+Y+YW F +A LD+DAM
Sbjct: 78 LNSFLPNDIAIKDIFLVVDEAHARFDATQRSYEYWLVQEKNPFFNEYAHFIKADLDVDAM 137
Query: 269 HKAAQYLVGTHDFRNLCKMN 288
+KAA L+ DF+ K N
Sbjct: 138 NKAAAELLNYKDFQCFSKSN 157
>gi|345850521|ref|ZP_08803516.1| tRNA pseudouridine synthase A [Streptomyces zinciresistens K42]
gi|345638002|gb|EGX59514.1| tRNA pseudouridine synthase A [Streptomyces zinciresistens K42]
Length = 275
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 23/91 (25%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------W--FP 259
LK L L RD++V A P + ARF ++R Y Y W +P
Sbjct: 80 LKRLAGRLSRDVRVWALREAPAGFDARFSAVWRRYAYRVTDNPGGVDPLLRGHVLWHDWP 139
Query: 260 QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD+ AM++AA L+G HDF CK G
Sbjct: 140 ---LDVAAMNEAAGRLLGEHDFAAYCKKREG 167
>gi|257064823|ref|YP_003144495.1| pseudouridylate synthase I [Slackia heliotrinireducens DSM 20476]
gi|256792476|gb|ACV23146.1| pseudouridylate synthase I [Slackia heliotrinireducens DSM 20476]
Length = 271
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 17/83 (20%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------- 262
L+ LN + + V P +SARFD +R Y+Y A
Sbjct: 96 LRSLNALVDDHMSVSVVEEKPFGFSARFDAKWREYRYRISTAAARPVLIMPLVWHLGGVD 155
Query: 263 LDIDAMHKAAQYLVGTHDFRNLC 285
LDIDAM++AA +L+G HDF++ C
Sbjct: 156 LDIDAMNRAAVHLIGEHDFKSFC 178
>gi|354612863|ref|ZP_09030803.1| tRNA pseudouridine synthase A [Saccharomonospora paurometabolica
YIM 90007]
gi|353222827|gb|EHB87124.1| tRNA pseudouridine synthase A [Saccharomonospora paurometabolica
YIM 90007]
Length = 265
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 17/85 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG-----------------LDI 265
LN LP D++V P + ARF R+Y+Y A L +
Sbjct: 73 LNRALPADVRVFDVRRAPAGFDARFSAAERHYEYRVSDAAWGVSPLRRRDTLAWPRELSV 132
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVG 290
+AM++AA +LVG HDF CK G
Sbjct: 133 EAMNEAATHLVGLHDFAAFCKRREG 157
>gi|314934267|ref|ZP_07841626.1| tRNA pseudouridine synthase A [Staphylococcus caprae C87]
gi|313652197|gb|EFS15960.1| tRNA pseudouridine synthase A [Staphylococcus caprae C87]
Length = 267
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDID 266
+N LP DI V V E + R+DC+ + Y+Y F + LD+
Sbjct: 78 MNRFLPDDIYVKNVHTVEENFHCRYDCVGKRYRYKVYQGEHRNPFKSGLETFINSDLDLS 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AA + +GTHDF C
Sbjct: 138 KMNEAAHHFIGTHDFTGFC 156
>gi|154505512|ref|ZP_02042250.1| hypothetical protein RUMGNA_03049 [Ruminococcus gnavus ATCC 29149]
gi|336431647|ref|ZP_08611492.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_58FAA]
gi|153794170|gb|EDN76590.1| tRNA pseudouridine synthase A [Ruminococcus gnavus ATCC 29149]
gi|336019920|gb|EGN49638.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_58FAA]
Length = 246
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 29/147 (19%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDID 266
LN LP DI V+ V + R+ + Y+Y +F LDI+
Sbjct: 79 LNQRLPDDIVVIRSEEVSADWHPRYCNSKKTYEYHILNAKIPDPTRRLTRYFVSFDLDIE 138
Query: 267 AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ---------FNDI 317
M KAAQYLVGTHDF + C NV V + R + + + +N +
Sbjct: 139 KMKKAAQYLVGTHDFVSFC--NVRTDVEDTVRTIYSLDILPVGDEITIRIQGNGFLYNMV 196
Query: 318 KEVVDSEPSFKKGQGNEKPEIIQQLVD 344
+ +V + + G+G PE +Q++++
Sbjct: 197 RIIVGT--LVRVGRGFYTPEQVQEILE 221
>gi|403388244|ref|ZP_10930301.1| tRNA pseudouridine synthase A [Clostridium sp. JC122]
Length = 244
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 29/147 (19%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA----------------GLDID 266
LN LP DI V+ VPE++ +R+ C + Y Y + LDI+
Sbjct: 79 LNVKLPDDIAVLKSEEVPEEFHSRYSCRGKKYSYTILERPMKATIDRNYVCQCKYNLDIE 138
Query: 267 AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ---------FNDI 317
M++A +Y +GTHDF N G+ V R ++ V V+ +N +
Sbjct: 139 KMNEACKYFIGTHDFSAF--KNKGSSVKTSVRTISELYVEKTGNYVKIFVSADGFLYNMV 196
Query: 318 KEVVDSEPSFKKGQGNEKPEIIQQLVD 344
+ +V + G G P+ I+ ++D
Sbjct: 197 RIIVGTLIDV--GIGKINPKSIKNIID 221
>gi|301093915|ref|XP_002997802.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262109888|gb|EEY67940.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 330
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 82 DCYQRNWYKRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLAL-------IELGI 134
D Q++ A+T ++ I+ +G + + ELA R QP DV+ A +E+
Sbjct: 92 DAVQKSAAD-ALTEILAKYIQRIGASAKEIAELAGRAQPKATDVVQAFQDLEPAPVEMKD 150
Query: 135 PIHGLDTYAKRPM-RTV--FPPVAPSTQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAY 191
+ L+T AKRP R V FP + + G ++ PPH+P +LP P+ H Y
Sbjct: 151 LVKALET-AKRPFPRDVPAFPARKRDISGNTIEQTKIGRRETLPPHVPSFLPPLPNRHTY 209
>gi|239618279|ref|YP_002941601.1| tRNA pseudouridine synthase ACD [Kosmotoga olearia TBF 19.5.1]
gi|259550401|sp|C5CGS8.1|TRUA_KOSOT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|239507110|gb|ACR80597.1| tRNA pseudouridine synthase A [Kosmotoga olearia TBF 19.5.1]
Length = 250
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 18/76 (23%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARF-----------------DCLFRNYKYWFPQAGLDI 265
LN NLP DI V VP +S RF D R Y +WFP +D+
Sbjct: 80 LNANLPDDIYVRRIHEVPSNFSPRFAAKKRIYHYYILNTKEPDLFRRKYFWWFPYE-VDL 138
Query: 266 DAMHKAAQYLVGTHDF 281
+ M +A++YL+G HDF
Sbjct: 139 NRMRQASRYLIGEHDF 154
>gi|336435341|ref|ZP_08615056.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 1_4_56FAA]
gi|336000794|gb|EGN30940.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 1_4_56FAA]
Length = 257
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 16/82 (19%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDID 266
+N LP DI VV VP+ + R+ + Y+Y +F LD++
Sbjct: 79 VNQKLPDDIVVVKSEEVPKDWHPRYQNSVKTYEYHILNARMPDPTRRYTTYFVSYHLDLE 138
Query: 267 AMHKAAQYLVGTHDFRNLCKMN 288
M KAA YLVG HDF + C ++
Sbjct: 139 QMRKAAGYLVGEHDFASFCNIH 160
>gi|228989617|ref|ZP_04149601.1| tRNA pseudouridine synthase A 2 [Bacillus pseudomycoides DSM 12442]
gi|228770154|gb|EEM18734.1| tRNA pseudouridine synthase A 2 [Bacillus pseudomycoides DSM 12442]
Length = 245
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 19/87 (21%)
Query: 214 DNELPYLKM---LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY--WFPQ-------- 260
D LP LK+ LN LP DI + + E++ AR++ + Y Y W +
Sbjct: 68 DENLPELKVKKYLNQYLPNDISITDVELISERFHARYNSKAKTYLYKIWNEEHTNPFMRK 127
Query: 261 ------AGLDIDAMHKAAQYLVGTHDF 281
L+I+ M KAAQYL+G+HDF
Sbjct: 128 YSMHVGKKLNIENMQKAAQYLIGSHDF 154
>gi|303274402|ref|XP_003056522.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462606|gb|EEH59898.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 323
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 17/109 (15%)
Query: 91 RAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTV 150
+AV ++ + E+G +H + E+ R + DVL AL+ LG +R +R+
Sbjct: 29 QAVAEILSRYLIELGYAAHRYAEIGGRATVDVCDVLFALVGLGCTF-------ERLIRST 81
Query: 151 FPPVAPSTQPKPLSILQAGVKQPHP----------PHIPPYLPLFPDPH 189
P TQ P + + + + P PH P YLP FPD H
Sbjct: 82 GSHAVPFTQTIPQRLRVSRLPKRAPAFRELGHSSFPHYPKYLPSFPDEH 130
>gi|347732241|ref|ZP_08865323.1| tRNA pseudouridine synthase A [Desulfovibrio sp. A2]
gi|347519067|gb|EGY26230.1| tRNA pseudouridine synthase A [Desulfovibrio sp. A2]
Length = 288
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-------WFP--------- 259
++ + + N LP DI V A + VPE + ARF + Y Y W P
Sbjct: 77 DMDWQRAFNAGLPDDIAVAAVARVPEDFHARFSARGKTYTYRLWPTRRWVPPRLAPFVWA 136
Query: 260 QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 294
LD+ AM +AA +L+G HDF + N G +
Sbjct: 137 TGPLDLAAMDEAAAHLIGRHDFASF--QNTGTDIA 169
>gi|15612730|ref|NP_241033.1| tRNA pseudouridine synthase A [Bacillus halodurans C-125]
gi|8134764|sp|Q9Z9J0.1|TRUA_BACHD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|4512436|dbj|BAA75303.1| truA [Bacillus halodurans]
gi|10172779|dbj|BAB03886.1| tRNA pseudouridine synthase A (pseudouridylate synthase I)
[Bacillus halodurans C-125]
Length = 263
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 22/82 (26%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARF-----------------DCLFRNYKYW--FPQAGL 263
LN+ LP DI V+ + VP + AR+ D RNY Y +P L
Sbjct: 80 LNSQLPADICVLEAADVPADFHARYSAKTKEYRYRVLTSAQADVFRRNYTYHVRYP---L 136
Query: 264 DIDAMHKAAQYLVGTHDFRNLC 285
D++AM +AA L+GTHDF + C
Sbjct: 137 DVEAMQRAAVQLLGTHDFSSFC 158
>gi|85707833|ref|ZP_01038899.1| tRNA pseudouridine synthase A [Erythrobacter sp. NAP1]
gi|85689367|gb|EAQ29370.1| tRNA pseudouridine synthase A [Erythrobacter sp. NAP1]
Length = 247
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 20/105 (19%)
Query: 194 TPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNL-PRDIKVVAWSPVPEKYSARFDCLFR 252
T V L +RS + E D + + LN +L P I ++A V E + ARF C+ R
Sbjct: 53 TGVHALGMRSHVDL---EKDIDPFRLSEALNAHLRPDPIAILACEVVDEDWHARFSCVGR 109
Query: 253 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDF 281
Y Y W LD +AMH+AAQ LVG HDF
Sbjct: 110 RYVYKIANRRAPLTLAKNRAWQVAHDLDHEAMHRAAQALVGRHDF 154
>gi|425905570|gb|AFY10640.1| TruA, partial [Bradyrhizobium iriomotense]
Length = 164
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 37/76 (48%), Gaps = 17/76 (22%)
Query: 223 LNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYKY----------------WFPQAGLDI 265
LN +L P I V+ VPE + ARF + R+Y+Y W LD
Sbjct: 51 LNAHLRPAPIAVLEAEIVPETFEARFSAVKRHYRYRITNTRANLALDVGHAWRVSRRLDT 110
Query: 266 DAMHKAAQYLVGTHDF 281
DAMH AAQ L+G HDF
Sbjct: 111 DAMHAAAQRLIGKHDF 126
>gi|425898623|ref|ZP_18875214.1| tRNA pseudouridine synthase A [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397891285|gb|EJL07763.1| tRNA pseudouridine synthase A [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 274
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 20/76 (26%)
Query: 224 NNNLPRDIKVVAWSPV-PEKYSARFDCLFRNYKY-----------------WFPQAGLDI 265
N NLP DI V +W+ V P + ARF + R Y+Y W + LD+
Sbjct: 86 NINLPHDISV-SWAKVMPAHFHARFKAIARRYRYVIYNDQIRPAHLNEEITWNHRP-LDV 143
Query: 266 DAMHKAAQYLVGTHDF 281
+ M +AAQYLVGTHDF
Sbjct: 144 ERMAEAAQYLVGTHDF 159
>gi|357390058|ref|YP_004904898.1| putative tRNA pseudouridine synthase A [Kitasatospora setae
KM-6054]
gi|311896534|dbj|BAJ28942.1| putative tRNA pseudouridine synthase A [Kitasatospora setae
KM-6054]
Length = 302
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 19/89 (21%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------------------WFPQA 261
L+ L LP D++V + P + ARF ++R Y Y W +
Sbjct: 99 LRRLAGRLPADVRVYRVAEAPHGFDARFAAIWRRYAYRVADHPGGVDPLLRGHVLWHDRP 158
Query: 262 GLDIDAMHKAAQYLVGTHDFRNLCKMNVG 290
LD++ M++AA+ LVG HDF CK G
Sbjct: 159 -LDLEKMNEAARLLVGEHDFAAYCKKREG 186
>gi|260588018|ref|ZP_05853931.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583]
gi|331082412|ref|ZP_08331538.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA]
gi|260541545|gb|EEX22114.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583]
gi|330400898|gb|EGG80499.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA]
Length = 244
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 16/81 (19%)
Query: 221 KMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA----------------GLD 264
+ LN LP DI++ S E++ +R + + Y+Y LD
Sbjct: 77 QYLNEYLPEDIEISKVSEAEERFHSRLNAKEKVYQYRIVSGIHKNVFERKYQCPLHETLD 136
Query: 265 IDAMHKAAQYLVGTHDFRNLC 285
++AM +AA+YL GTHDF++ C
Sbjct: 137 VNAMQEAAKYLEGTHDFKSFC 157
>gi|395534143|ref|XP_003769107.1| PREDICTED: transcription initiation factor TFIID subunit 8
[Sarcophilus harrisii]
Length = 300
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%)
Query: 157 STQPKPLSILQAGVKQPHPPHIPPYLPLFPDPHAYIRTPV 196
+ QP L AG + HPPHIP + P FPDPH YI+TP
Sbjct: 118 TNQPVTPKALTAGQNKSHPPHIPSHFPEFPDPHTYIKTPT 157
>gi|378719009|ref|YP_005283898.1| tRNA pseudouridine synthase A [Gordonia polyisoprenivorans VH2]
gi|375753712|gb|AFA74532.1| tRNA pseudouridine synthase A [Gordonia polyisoprenivorans VH2]
Length = 297
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 27/124 (21%)
Query: 189 HAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 248
HA I P L+ RS P + L LP D++V A +PV E + ARF
Sbjct: 77 HADI--PASALETRSLAGGPAL--------LVGRLAKMLPDDVRVKAVTPVSEHFDARFS 126
Query: 249 CLFRNYKYWFPQA-----------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 291
L R+Y+Y A LD++AM+ A+ L+G +DF C+ G
Sbjct: 127 ALRRHYRYRLTDAVFGAEPTRARTTATWRRPLDVEAMNAASSTLLGLNDFAAFCRRREGA 186
Query: 292 GVVN 295
V
Sbjct: 187 TTVR 190
>gi|387128051|ref|YP_006296656.1| tRNA pseudouridine synthase A [Methylophaga sp. JAM1]
gi|386275113|gb|AFI85011.1| tRNA pseudouridine synthase A [Methylophaga sp. JAM1]
Length = 259
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY-------------- 256
E+ E +L LN+NLP D+ V +PV E ++ARF + R Y+Y
Sbjct: 66 EAVREERNWLLGLNSNLPHDVCVKWVNPVSEDFNARFSAIKRRYRYLILNRDSRSSVHHQ 125
Query: 257 --WFPQAGLDIDAMHKAAQYLVGTHDF 281
W+ LD M +AA L+G HDF
Sbjct: 126 RMWWVYKPLDEHKMQQAANSLLGQHDF 152
>gi|291298744|ref|YP_003510022.1| tRNA pseudouridine synthase A [Stackebrandtia nassauensis DSM
44728]
gi|290567964|gb|ADD40929.1| tRNA pseudouridine synthase A [Stackebrandtia nassauensis DSM
44728]
Length = 300
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 19/99 (19%)
Query: 220 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY------W------------FPQA 261
L L LP D+++ A + V +++ARF L R Y Y W +P+
Sbjct: 99 LWRLRGILPPDVRITAITEVSSEFNARFSALSRRYVYRVADTVWGVNPLRRLDTVAWPRP 158
Query: 262 GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLV 300
+D+D M+ AA LVG HDF CK G V R V
Sbjct: 159 -VDLDVMNAAATVLVGEHDFAAFCKRREGATTVRALRTV 196
>gi|385782454|ref|YP_005758625.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
11819-97]
gi|418573033|ref|ZP_13137233.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21333]
gi|364523443|gb|AEW66193.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
11819-97]
gi|371983120|gb|EHP00267.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21333]
Length = 267
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 223 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG----------------LDID 266
+N LP DI V V + + R+DC+ + Y+Y QA LD+
Sbjct: 78 MNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLG 137
Query: 267 AMHKAAQYLVGTHDFRNLC 285
M++AAQ +GTHDF C
Sbjct: 138 KMNRAAQQFIGTHDFTGFC 156
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,897,162,113
Number of Sequences: 23463169
Number of extensions: 347926653
Number of successful extensions: 874274
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 2258
Number of HSP's that attempted gapping in prelim test: 870390
Number of HSP's gapped (non-prelim): 3489
length of query: 496
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 349
effective length of database: 8,910,109,524
effective search space: 3109628223876
effective search space used: 3109628223876
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)