Query psy3604
Match_columns 496
No_of_seqs 363 out of 1748
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 20:52:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3604.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3604hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dj0a_ d.265.1.1 (A:) Pseudou 100.0 4.6E-45 3.3E-49 360.2 20.4 222 94-375 3-247 (264)
2 d2huec1 a.22.1.1 (C:20-101) Hi 95.9 0.0014 1E-07 51.9 2.2 70 10-136 9-78 (82)
3 d1htaa_ a.22.1.2 (A:) Archaeal 94.7 0.024 1.7E-06 42.5 5.6 61 14-131 7-67 (68)
4 d1tafa_ a.22.1.3 (A:) TAF(II)4 94.1 0.034 2.4E-06 42.3 5.1 60 14-130 5-64 (68)
5 d1ku5a_ a.22.1.2 (A:) Archaeal 89.5 0.15 1.1E-05 37.8 3.9 59 15-130 7-65 (66)
6 d1tafb_ a.22.1.3 (B:) TAF(II)6 86.4 0.53 3.9E-05 35.6 5.3 61 13-130 9-69 (70)
7 d1f1ea_ a.22.1.2 (A:) Archaeal 84.3 0.44 3.2E-05 40.9 4.5 61 14-131 83-143 (151)
8 d1n1ja_ a.22.1.3 (A:) Nuclear 80.8 1.2 8.5E-05 34.4 5.4 35 100-134 37-71 (87)
9 d2bykb1 a.22.1.3 (B:11-99) Chr 75.2 2 0.00014 33.2 5.2 35 100-134 34-68 (89)
10 d1f1ea_ a.22.1.2 (A:) Archaeal 72.2 1.6 0.00012 37.1 4.4 65 13-134 4-69 (151)
11 d1jfib_ a.22.1.3 (B:) Negative 57.6 3.4 0.00025 34.4 3.4 35 100-134 38-72 (135)
12 d1tzyc_ a.22.1.1 (C:) Histone 22.4 22 0.0016 27.7 2.5 34 100-133 59-92 (95)
13 d1n1jb_ a.22.1.3 (B:) Nuclear 22.1 18 0.0013 26.5 1.9 32 100-131 34-65 (78)
14 d2hh8a1 d.358.1.1 (A:7-133) Hy 20.1 29 0.0021 28.4 2.8 28 261-288 66-94 (127)
No 1
>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=4.6e-45 Score=360.22 Aligned_cols=222 Identities=22% Similarity=0.227 Sum_probs=190.4
Q ss_pred cceeeeeeeeeccccHHHhhhcCCCCCCHHHHHHHHHhcCCCCCCccccccCCCcccCCCCCCCCCCCCchhccccccCC
Q psy3604 94 TSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFPPVAPSTQPKPLSILQAGVKQP 173 (496)
Q Consensus 94 ~~~i~~yL~~lG~sa~~~ae~agRTqp~~~DV~~AL~~~Gi~v~gL~~y~k~p~r~~lP~~p~~~~p~~~~fL~aG~~~~ 173 (496)
+++|++.|+|+|+.++|||.+.+. .++.+.++.||...+.. + ..+.
T Consensus 3 ~~r~al~i~Y~Gt~f~G~Q~Q~~~-~TVq~~Le~aL~~~~~~----------~----------------~~~~------- 48 (264)
T d1dj0a_ 3 VYKIALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVANE----------P----------------ITVF------- 48 (264)
T ss_dssp CEEEEEEEEECCTTSSCSCCTTCS-SCHHHHHHHHHHHHHTS----------C----------------CCEE-------
T ss_pred cEEEEEEEEEECCCeeeEeECcCC-CCHHHHHHHHHHHhhCC----------C----------------eEEE-------
Confidence 356899999999999999999873 56788888898875321 1 0122
Q ss_pred CCCCCCCCCCCCCCcccccccceEEEeecccCCCCCCCCCCChHHHHHHHHhcCCCCcEEEEEEecCCCCCccccCCcee
Q psy3604 174 HPPHIPPYLPLFPDPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 253 (496)
Q Consensus 174 ~p~hIP~~Lp~~~D~~v~a~~qVvsf~l~~~i~~~~~~~~~~~~~l~~~LN~~LP~DIrV~~v~~V~~~FhARfsa~~R~ 253 (496)
.++|||+||||++||++|+++.. .+...+...||+.||+||+|+++.+|+++|||||+|++|+
T Consensus 49 --------~agRTD~GVhA~~qv~~~~~~~~---------~~~~~~~~~lN~~Lp~dI~i~~~~~v~~~F~aR~~a~~r~ 111 (264)
T d1dj0a_ 49 --------CAGRTDAGVHGTGQVVHFETTAL---------RKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARR 111 (264)
T ss_dssp --------ESSCCCTTCEEEEEEEEEEESCC---------CCHHHHHHHHHHTSCTTEEEEEEEECCTTCCTTTTCCEEE
T ss_pred --------EeecccCCcceeeEEEEEeeccc---------hhhhhhhcccccccccccccccceeccccccchhhhhhcc
Confidence 24679999999999999999764 3678999999999999999999999999999999999999
Q ss_pred EEEecC----------------CCCccHHHHHHHHHHccccccccccccccccCCCCCceEEEEEEEEEecceEEEEEEe
Q psy3604 254 YKYWFP----------------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQFNDI 317 (496)
Q Consensus 254 Y~Y~~~----------------~~~LDie~M~eAak~fvGtHDF~nF~~~~~~~~~~stvRtI~~i~i~~~~~~i~i~I~ 317 (496)
|+|++. ...+|+++|++|++.|+|+|||+|||+.+. ...+++|+|..+.+.+.++++.|+|+
T Consensus 112 Y~Y~i~~~~~~~~~~~~~~~~~~~~ld~~~m~~a~~~~~G~hdF~~F~~~~~--~~~~~~r~i~~~~~~~~~~~i~i~i~ 189 (264)
T d1dj0a_ 112 YRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQC--QSRTPWRNVMHINVTRHGPYVVVDIK 189 (264)
T ss_dssp EEEEEECSSSCCCTTTTSSEECCSCCCHHHHHHHHGGGCEEEECGGGCCTTC--CCSCCEEEEEEEEEEEETTEEEEEEE
T ss_pred cceeeccccccccccccccccccCCcchHHHHHHHhhccCcccccccccccc--cCCCcccccccccceecCcEEEEEec
Confidence 999874 247899999999999999999999998753 35689999999999999999999999
Q ss_pred eCce-----e--hhHHHHHhCCCCCHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCeeeeeccC
Q psy3604 318 KEVV-----D--SEPSFKKGQGNEKPEIIQQLVDIEKYPRIKSAQFPWSSTGATTPNELFRRVFL 375 (496)
Q Consensus 318 G~sF-----R--VGtLv~VG~G~~~~e~I~~lL~~~~~~~~p~~~~~~Ap~aP~~GL~L~~V~Y~ 375 (496)
|+|| | ||+|++||+|++++++|+++|+.+.+ .. .. ++|||+||+|++|.|+
T Consensus 190 g~sFL~~qVR~mvg~ll~vg~g~~~~~~i~~~L~~~~r--~~--~~---~~APa~GL~L~~V~Y~ 247 (264)
T d1dj0a_ 190 ANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDR--TL--AA---ATAKAEGLYLVAVDYP 247 (264)
T ss_dssp ESCCCTTHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCG--GG--SC---CCCCSTTEEEEEEECC
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCc--cc--Cc---cccCCCCCEEcccccC
Confidence 9999 7 99999999999999999999987542 22 22 3456999999999996
No 2
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=95.91 E-value=0.0014 Score=51.91 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhCccccChHHHHHHHHHHHhhhccccccchhccccccccccccccCCCCCcccccccchhhhhhhhh
Q psy3604 10 SLLKSSVVALLAEVGFDAADNAALETLVEICQACKYTCLTVTAKVLSSHKEREKEDRIGESEGTCAEVTSVEDCYQRNWY 89 (496)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 89 (496)
.+-+.+|-.+....|-...+..|.++|.+++..
T Consensus 9 gI~k~~i~Riar~~Gv~ris~d~~~~l~~~l~~----------------------------------------------- 41 (82)
T d2huec1 9 GITKPAIRRLARRGGVKRISGLIYEETRGVLKV----------------------------------------------- 41 (82)
T ss_dssp SSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHH-----------------------------------------------
T ss_pred CcCHHHHHHHHHHcCcccchHHHHHHHHHHHHH-----------------------------------------------
Confidence 344678888999999999999999999999985
Q ss_pred hhhhcceeeeeeeeeccccHHHhhhcCCCCCCHHHHHHHHHhcCCCC
Q psy3604 90 KRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPI 136 (496)
Q Consensus 90 ~r~~~~~i~~yL~~lG~sa~~~ae~agRTqp~~~DV~~AL~~~Gi~v 136 (496)
++.++.+.+-.||+|++|..-+..||..||..+|-.+
T Consensus 42 ----------~l~~i~~~a~~~~~hakRKTvt~~DV~~Alkr~g~pl 78 (82)
T d2huec1 42 ----------FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTL 78 (82)
T ss_dssp ----------HHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEE
T ss_pred ----------HHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhcCCCC
Confidence 6888999999999999999999999999999877443
No 3
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=94.69 E-value=0.024 Score=42.53 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=53.5
Q ss_pred HHHHHHHHHhCccccChHHHHHHHHHHHhhhccccccchhccccccccccccccCCCCCcccccccchhhhhhhhhhhhh
Q psy3604 14 SSVVALLAEVGFDAADNAALETLVEICQACKYTCLTVTAKVLSSHKEREKEDRIGESEGTCAEVTSVEDCYQRNWYKRAV 93 (496)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~ 93 (496)
..|-.+.++.|-......|.+.|.+.++.
T Consensus 7 a~I~ri~k~~~~~ris~ea~~~l~~~~e~--------------------------------------------------- 35 (68)
T d1htaa_ 7 APIGRIIKNAGAERVSDDARIALAKVLEE--------------------------------------------------- 35 (68)
T ss_dssp HHHHHHHHHTTCSCCCHHHHHHHHHHHHH---------------------------------------------------
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHH---------------------------------------------------
Confidence 45666777788888999999999888884
Q ss_pred cceeeeeeeeeccccHHHhhhcCCCCCCHHHHHHHHHh
Q psy3604 94 TSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIE 131 (496)
Q Consensus 94 ~~~i~~yL~~lG~sa~~~ae~agRTqp~~~DV~~AL~~ 131 (496)
||.++...+..+|++++|..-+..||..||+.
T Consensus 36 ------fi~~l~~~a~~~a~~~kRkTi~~~DV~~Alk~ 67 (68)
T d1htaa_ 36 ------MGEEIASEAVKLAKHAGRKTIKAEDIELARKM 67 (68)
T ss_dssp ------HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHh
Confidence 78999999999999999999999999999974
No 4
>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=94.08 E-value=0.034 Score=42.26 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=52.4
Q ss_pred HHHHHHHHHhCccccChHHHHHHHHHHHhhhccccccchhccccccccccccccCCCCCcccccccchhhhhhhhhhhhh
Q psy3604 14 SSVVALLAEVGFDAADNAALETLVEICQACKYTCLTVTAKVLSSHKEREKEDRIGESEGTCAEVTSVEDCYQRNWYKRAV 93 (496)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~ 93 (496)
..|.+||++.|-...++.....|.|..-+
T Consensus 5 ~~i~~iL~~~GV~~yeprV~~qlLef~yR--------------------------------------------------- 33 (68)
T d1tafa_ 5 QVIMSILKELNVQEYEPRVVNQLLEFTFR--------------------------------------------------- 33 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHHHH---------------------------------------------------
T ss_pred HHHHHHHHHcCCccccHHHHHHHHHHHHH---------------------------------------------------
Confidence 46889999999999999999999999875
Q ss_pred cceeeeeeeeeccccHHHhhhcCCCCCCHHHHHHHHH
Q psy3604 94 TSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALI 130 (496)
Q Consensus 94 ~~~i~~yL~~lG~sa~~~ae~agRTqp~~~DV~~AL~ 130 (496)
|.+.+=..+..|++|+||++.+.+||-+|..
T Consensus 34 ------Ytt~VL~DA~vys~HA~k~~id~dDVkLAi~ 64 (68)
T d1tafa_ 34 ------YVTSILDDAKVYANHARKKTIDLDDVRLATE 64 (68)
T ss_dssp ------HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence 3455556788899999999999999999875
No 5
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=89.53 E-value=0.15 Score=37.77 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=49.0
Q ss_pred HHHHHHHHhCccccChHHHHHHHHHHHhhhccccccchhccccccccccccccCCCCCcccccccchhhhhhhhhhhhhc
Q psy3604 15 SVVALLAEVGFDAADNAALETLVEICQACKYTCLTVTAKVLSSHKEREKEDRIGESEGTCAEVTSVEDCYQRNWYKRAVT 94 (496)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~ 94 (496)
.|-.+..+.|=..+...|.+.|...++-
T Consensus 7 ~I~rI~k~~~~~ris~ea~~~l~~a~e~---------------------------------------------------- 34 (66)
T d1ku5a_ 7 PVDRLIRKAGAERVSEQAAKVLAEYLEE---------------------------------------------------- 34 (66)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHHHH----------------------------------------------------
T ss_pred HHHHHHHhCcccccHHHHHHHHHHHHHH----------------------------------------------------
Confidence 4445555666667888888888888874
Q ss_pred ceeeeeeeeeccccHHHhhhcCCCCCCHHHHHHHHH
Q psy3604 95 SVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALI 130 (496)
Q Consensus 95 ~~i~~yL~~lG~sa~~~ae~agRTqp~~~DV~~AL~ 130 (496)
||.++...++.++++.||..-...||..||+
T Consensus 35 -----Fi~~l~~~a~~~a~~~~RKTI~~~Dv~~Al~ 65 (66)
T d1ku5a_ 35 -----YAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 65 (66)
T ss_dssp -----HHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence 7899999999999999999899999999985
No 6
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=86.41 E-value=0.53 Score=35.58 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCccccChHHHHHHHHHHHhhhccccccchhccccccccccccccCCCCCcccccccchhhhhhhhhhhh
Q psy3604 13 KSSVVALLAEVGFDAADNAALETLVEICQACKYTCLTVTAKVLSSHKEREKEDRIGESEGTCAEVTSVEDCYQRNWYKRA 92 (496)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~ 92 (496)
..+|-.+.+.+|+......+...|.+=++ |
T Consensus 9 ~esik~iAeS~Gi~~l~de~a~~LA~Dve-----------------------------------------------Y--- 38 (70)
T d1tafb_ 9 AESMKVIAESIGVGSLSDDAAKELAEDVS-----------------------------------------------I--- 38 (70)
T ss_dssp HHHHHHHHHHTTCCCBCHHHHHHHHHHHH-----------------------------------------------H---
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHH-----------------------------------------------H---
Confidence 45677888999999999999999988776 2
Q ss_pred hcceeeeeeeeeccccHHHhhhcCCCCCCHHHHHHHHH
Q psy3604 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALI 130 (496)
Q Consensus 93 ~~~~i~~yL~~lG~sa~~~ae~agRTqp~~~DV~~AL~ 130 (496)
-|.++-..+..||+|+.|+.-+..||-.||+
T Consensus 39 -------Rl~eiiQeA~KFMrhskR~~Ltt~Did~ALk 69 (70)
T d1tafb_ 39 -------KLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp -------HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred -------HHHHHHHHHHHHHHHhccCcCcHHHHHHHHc
Confidence 4667778899999999999999999999984
No 7
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=84.32 E-value=0.44 Score=40.90 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=54.3
Q ss_pred HHHHHHHHHhCccccChHHHHHHHHHHHhhhccccccchhccccccccccccccCCCCCcccccccchhhhhhhhhhhhh
Q psy3604 14 SSVVALLAEVGFDAADNAALETLVEICQACKYTCLTVTAKVLSSHKEREKEDRIGESEGTCAEVTSVEDCYQRNWYKRAV 93 (496)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~ 93 (496)
..|-.++++.|-......|++.|.+.++.
T Consensus 83 a~IkRi~k~~g~~ris~dA~~~l~~~~E~--------------------------------------------------- 111 (151)
T d1f1ea_ 83 ATVRRILKRAGIERASSDAVDLYNKLICR--------------------------------------------------- 111 (151)
T ss_dssp HHHHHHHHHTTCCEECHHHHHHHHHHHHH---------------------------------------------------
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHH---------------------------------------------------
Confidence 45666777889999999999999999984
Q ss_pred cceeeeeeeeeccccHHHhhhcCCCCCCHHHHHHHHHh
Q psy3604 94 TSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIE 131 (496)
Q Consensus 94 ~~~i~~yL~~lG~sa~~~ae~agRTqp~~~DV~~AL~~ 131 (496)
|+.++...+..+|.+++|..-+..||..|+..
T Consensus 112 ------fi~~l~~~A~~~a~~~kRkTI~~~DI~~Av~~ 143 (151)
T d1f1ea_ 112 ------ATEELGEKAAEYADEDGRKTVQGEDVEKAITY 143 (151)
T ss_dssp ------HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence 78899999999999999999999999999985
No 8
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Probab=80.82 E-value=1.2 Score=34.44 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=32.5
Q ss_pred eeeeeccccHHHhhhcCCCCCCHHHHHHHHHhcCC
Q psy3604 100 VIKEVGGLSHDFCELANRQQPMLADVLLALIELGI 134 (496)
Q Consensus 100 yL~~lG~sa~~~ae~agRTqp~~~DV~~AL~~~Gi 134 (496)
||++++..+...+...+|..-+..||..|+..+|.
T Consensus 37 Fi~~lt~~A~~~a~~~~rKTI~~~dv~~Al~~~~~ 71 (87)
T d1n1ja_ 37 FISFITSEASERCHQEKRKTINGEDILFAMSTLGF 71 (87)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCc
Confidence 78899999999999999999999999999999875
No 9
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=75.17 E-value=2 Score=33.24 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=32.4
Q ss_pred eeeeeccccHHHhhhcCCCCCCHHHHHHHHHhcCC
Q psy3604 100 VIKEVGGLSHDFCELANRQQPMLADVLLALIELGI 134 (496)
Q Consensus 100 yL~~lG~sa~~~ae~agRTqp~~~DV~~AL~~~Gi 134 (496)
||++++..+...|...+|..-+..||..||..+|.
T Consensus 34 FI~~lt~~A~~~a~~~~rKtI~~~dv~~Al~~~~f 68 (89)
T d2bykb1 34 FAIFVTSSSTALAHKQNHKTITAKDILQTLTELDF 68 (89)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHCCc
Confidence 78899999999999999988999999999999886
No 10
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=72.22 E-value=1.6 Score=37.10 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=57.2
Q ss_pred HHHHHHHHHH-hCccccChHHHHHHHHHHHhhhccccccchhccccccccccccccCCCCCcccccccchhhhhhhhhhh
Q psy3604 13 KSSVVALLAE-VGFDAADNAALETLVEICQACKYTCLTVTAKVLSSHKEREKEDRIGESEGTCAEVTSVEDCYQRNWYKR 91 (496)
Q Consensus 13 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~r 91 (496)
+..|..++++ .|=...+..|.+.|.++|..
T Consensus 4 ~a~I~rilk~~~~~~ris~da~~~l~~~~~~------------------------------------------------- 34 (151)
T d1f1ea_ 4 KAAIERIFRQGIGERRLSQDAKDTIYDFVPT------------------------------------------------- 34 (151)
T ss_dssp HHHHHHHHHTTSTTCEECHHHHHHHHHHHHH-------------------------------------------------
T ss_pred ccHHHHHHHHhCCccccCHHHHHHHHHHHHH-------------------------------------------------
Confidence 3567888886 48889999999999999995
Q ss_pred hhcceeeeeeeeeccccHHHhhhcCCCCCCHHHHHHHHHhcCC
Q psy3604 92 AVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGI 134 (496)
Q Consensus 92 ~~~~~i~~yL~~lG~sa~~~ae~agRTqp~~~DV~~AL~~~Gi 134 (496)
++.+++..+...|+++||..-...||..++..+|.
T Consensus 35 --------~~~~Ia~eA~~l~~~~~rKTi~~edi~~a~~~~~~ 69 (151)
T d1f1ea_ 35 --------MAEYVANAAKSVLDASGKKTLMEEHLKALADVLMV 69 (151)
T ss_dssp --------HHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTC
T ss_pred --------HHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccc
Confidence 67889999999999999988999999999988775
No 11
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.61 E-value=3.4 Score=34.42 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=32.7
Q ss_pred eeeeeccccHHHhhhcCCCCCCHHHHHHHHHhcCC
Q psy3604 100 VIKEVGGLSHDFCELANRQQPMLADVLLALIELGI 134 (496)
Q Consensus 100 yL~~lG~sa~~~ae~agRTqp~~~DV~~AL~~~Gi 134 (496)
||.+|...+...|...+|..-...||..||..+|.
T Consensus 38 Fi~~lt~~A~~~a~~~~RkTi~~~Dv~~Al~~~~f 72 (135)
T d1jfib_ 38 FIHLISSEANEICNKSEKKTISPEHVIQALESLGF 72 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCc
Confidence 78899999999999999998999999999999886
No 12
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=22.40 E-value=22 Score=27.68 Aligned_cols=34 Identities=21% Similarity=0.002 Sum_probs=27.4
Q ss_pred eeeeeccccHHHhhhcCCCCCCHHHHHHHHHhcC
Q psy3604 100 VIKEVGGLSHDFCELANRQQPMLADVLLALIELG 133 (496)
Q Consensus 100 yL~~lG~sa~~~ae~agRTqp~~~DV~~AL~~~G 133 (496)
||..+=..+...+.|++|..-.+.|+.++..-.|
T Consensus 59 yLv~lfeda~~~a~HakRvTl~~kD~~LarrirG 92 (95)
T d1tzyc_ 59 YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 92 (95)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHhcCCCcCCHHHHHHHHHHhc
Confidence 5556666788899999999999999998876544
No 13
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.12 E-value=18 Score=26.48 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=29.5
Q ss_pred eeeeeccccHHHhhhcCCCCCCHHHHHHHHHh
Q psy3604 100 VIKEVGGLSHDFCELANRQQPMLADVLLALIE 131 (496)
Q Consensus 100 yL~~lG~sa~~~ae~agRTqp~~~DV~~AL~~ 131 (496)
+|+++...++..++..+|..-...|+..++..
T Consensus 34 Fi~~l~~~A~~~a~~~~rkti~~~dl~~av~~ 65 (78)
T d1n1jb_ 34 FITELTLRAWIHTEDNKRRTLQRNDIAMAITK 65 (78)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCcCCHHHHHHHHhc
Confidence 78899999999999999988999999999975
No 14
>d2hh8a1 d.358.1.1 (A:7-133) Hypothetical protein YdfO {Escherichia coli [TaxId: 562]}
Probab=20.07 E-value=29 Score=28.41 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=23.3
Q ss_pred CCccHHHHHHHHHHc-ccccccccccccc
Q psy3604 261 AGLDIDAMHKAAQYL-VGTHDFRNLCKMN 288 (496)
Q Consensus 261 ~~LDie~M~eAak~f-vGtHDF~nF~~~~ 288 (496)
...|.+++++|++.. -|..||.-||+.-
T Consensus 66 ~~~n~~~i~~al~~~QaG~~~f~~Fc~~~ 94 (127)
T d2hh8a1 66 FSKDRHLIETTSNKLKSREITFQEYRRNL 94 (127)
T ss_dssp SCCCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 467999999997655 5999999999864
Done!