Your job contains 1 sequence.
>psy3604
MATSKDTNRSLLKSSVVALLAEVGFDAADNAALETLVEICQACKYTCLTVTAKVLSSHKE
REKEDRIGESEGTCAEVTSVEDCYQRNWYKRAVTSVIGLVIKEVGGLSHDFCELANRQQP
MLADVLLALIELGIPIHGLDTYAKRPMRTVFPPVAPSTQPKPLSILQAGVKQPHPPHIPP
YLPLFPDPHAYIRTPVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVP
EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLV
THAGVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPRIKSAQFPWSS
TGATTPNELFRRVFLLSFLAWVDQYRIRQTAHCNIFTNLCTFYVPTYLPSLGEMIKDTVR
ESKCTMGDLDINHLIEGEFDSRPGRILSETGKLAPRVFQHFSEHSLRLSSDTMTEQCPRV
RVPMVTEVNKHLNMSF
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3604
(496 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1P3X5 - symbol:PUS3 "tRNA pseudouridine syntha... 299 1.8e-31 2
ZFIN|ZDB-GENE-030131-9433 - symbol:pus3 "pseudouridylate ... 293 2.7e-27 2
UNIPROTKB|F1N5P3 - symbol:PUS3 "tRNA pseudouridine syntha... 291 2.7e-27 2
UNIPROTKB|Q3SX07 - symbol:PUS3 "tRNA pseudouridine(38/39)... 291 2.7e-27 2
UNIPROTKB|E2RGS6 - symbol:PUS3 "tRNA pseudouridine syntha... 287 6.9e-27 2
MGI|MGI:1914299 - symbol:Pus3 "pseudouridine synthase 3" ... 289 8.2e-27 2
UNIPROTKB|Q9BZE2 - symbol:PUS3 "tRNA pseudouridine(38/39)... 283 2.4e-26 2
RGD|1310757 - symbol:Pus3 "pseudouridylate synthase 3" sp... 281 4.3e-26 2
UNIPROTKB|F1RVF1 - symbol:LOC100739830 "tRNA pseudouridin... 281 5.5e-26 2
UNIPROTKB|F1S759 - symbol:LOC100739830 "tRNA pseudouridin... 281 5.5e-26 2
WB|WBGene00006473 - symbol:tag-124 species:6239 "Caenorha... 220 4.2e-19 2
SGD|S000001895 - symbol:DEG1 "tRNA:pseudouridine synthase... 251 7.1e-19 1
FB|FBgn0034703 - symbol:CG3045 species:7227 "Drosophila m... 249 1.9e-18 1
CGD|CAL0000624 - symbol:orf19.6297 species:5476 "Candida ... 247 3.0e-18 1
ASPGD|ASPL0000040109 - symbol:AN3170 species:162425 "Emer... 146 2.4e-17 3
TAIR|locus:2009021 - symbol:AT1G34150 species:3702 "Arabi... 237 3.1e-17 1
DICTYBASE|DDB_G0288909 - symbol:pus3 "tRNA pseudouridylat... 225 9.6e-16 1
POMBASE|SPAC25B8.05 - symbol:SPAC25B8.05 "tRNA-pseudourid... 189 1.2e-11 2
FB|FBgn0022724 - symbol:Taf8 "TBP-associated factor 8" sp... 179 3.1e-11 2
UNIPROTKB|G4MKS9 - symbol:MGG_16154 "tRNA-pseudouridine s... 130 7.7e-08 2
MGI|MGI:1926879 - symbol:Taf8 "TAF8 RNA polymerase II, TA... 126 6.9e-07 2
RGD|1308423 - symbol:Taf8 "TAF8 RNA polymerase II, TATA b... 126 6.9e-07 2
UNIPROTKB|A7MAZ4 - symbol:TAF8 "Transcription initiation ... 126 7.1e-07 2
UNIPROTKB|E2RN76 - symbol:TAF8 "Uncharacterized protein" ... 126 7.1e-07 2
UNIPROTKB|Q7Z7C8 - symbol:TAF8 "Transcription initiation ... 126 7.1e-07 2
ZFIN|ZDB-GENE-040426-1013 - symbol:taf8 "TAF8 RNA polymer... 120 2.1e-06 2
UNIPROTKB|C9J7M8 - symbol:TAF8 "Transcription initiation ... 110 1.5e-05 1
UNIPROTKB|F1NMN6 - symbol:TAF8 "Transcription initiation ... 124 3.3e-05 1
UNIPROTKB|Q5ZMS1 - symbol:TAF8 "Transcription initiation ... 124 3.6e-05 1
>UNIPROTKB|F1P3X5 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AADN02042043 EMBL:AADN02042044
IPI:IPI00588906 Ensembl:ENSGALT00000001417 Uniprot:F1P3X5
Length = 379
Score = 299 (110.3 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 59/103 (57%), Positives = 73/103 (70%)
Query: 207 SPGEES-DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDI 265
S G+ S + EL Y +LN LP DI+V+AW+PV +SARF CL R Y+Y+FP A LD+
Sbjct: 145 SEGKSSKSEEELRYTHILNRVLPPDIRVLAWAPVEPDFSARFSCLKRTYRYFFPCADLDV 204
Query: 266 DAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA 308
MH AAQ VGTHDFRNLCKM+V NGV+NF+R + A VT A
Sbjct: 205 ALMHTAAQRYVGTHDFRNLCKMDVANGVINFQRTILSAQVTWA 247
Score = 67 (28.6 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 327 FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQ E PEII +L+D+EK PR
Sbjct: 284 FLIGQRMEGPEIIDELLDVEKNPR 307
>ZFIN|ZDB-GENE-030131-9433 [details] [associations]
symbol:pus3 "pseudouridylate synthase 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 ZFIN:ZDB-GENE-030131-9433 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG EMBL:BC049516 IPI:IPI00509994
RefSeq:NP_956361.1 UniGene:Dr.79340 ProteinModelPortal:Q7ZW97
PRIDE:Q7ZW97 GeneID:337487 KEGG:dre:337487 InParanoid:Q7ZW97
NextBio:20812266 ArrayExpress:Q7ZW97 Bgee:Q7ZW97 Uniprot:Q7ZW97
Length = 460
Score = 293 (108.2 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
Identities = 54/100 (54%), Positives = 73/100 (73%)
Query: 209 GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAM 268
G+ S D ELPY+K+LN LP DI+++ W+PV +SARFDC R Y+Y+FP+ LD++ M
Sbjct: 148 GKTSAD-ELPYVKILNRVLPHDIRILQWAPVESGFSARFDCQSRTYRYYFPRGDLDLELM 206
Query: 269 HKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSA 308
+AA+ GTHDFRNLCKM+VGNGV+ F+R + A V A
Sbjct: 207 AEAAKRYEGTHDFRNLCKMDVGNGVLQFQRTILSASVQPA 246
Score = 68 (29.0 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 330 GQGNEKPEIIQQLVDIEKYPR 350
GQ E PE+I QL+D+EK PR
Sbjct: 286 GQKLEAPEVIDQLLDVEKNPR 306
>UNIPROTKB|F1N5P3 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9913 "Bos
taurus" [GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
IPI:IPI00688075 UniGene:Bt.33259 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:DAAA02063102
Ensembl:ENSBTAT00000019065 Uniprot:F1N5P3
Length = 481
Score = 291 (107.5 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
Identities = 55/97 (56%), Positives = 70/97 (72%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E+ Y +LN LP DI+V+AW+PV +SARF CL R Y+Y+FP+A LDI M+ AAQ
Sbjct: 157 EIRYTHILNRVLPPDIRVLAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKY 216
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNV 312
VGTHDFRNLCKM+V NGV+NF+R + A V QN+
Sbjct: 217 VGTHDFRNLCKMDVANGVINFQRTILSAQVQRVGQNL 253
Score = 73 (30.8 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 327 FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG EKPE+I +L++IEK P+
Sbjct: 287 FLIGQGMEKPEVIDELLNIEKNPQ 310
>UNIPROTKB|Q3SX07 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005634 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:BC104569 IPI:IPI00688075
RefSeq:NP_001029684.1 UniGene:Bt.33259 ProteinModelPortal:Q3SX07
STRING:Q3SX07 PRIDE:Q3SX07 GeneID:515824 KEGG:bta:515824 CTD:83480
HOGENOM:HOG000199032 HOVERGEN:HBG053769 InParanoid:Q3SX07
OrthoDB:EOG4B2SXG NextBio:20872016 Uniprot:Q3SX07
Length = 481
Score = 291 (107.5 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
Identities = 55/97 (56%), Positives = 70/97 (72%)
Query: 216 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 275
E+ Y +LN LP DI+V+AW+PV +SARF CL R Y+Y+FP+A LDI M+ AAQ
Sbjct: 157 EIRYTHILNRVLPPDIRVLAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKY 216
Query: 276 VGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNV 312
VGTHDFRNLCKM+V NGV+NF+R + A V QN+
Sbjct: 217 VGTHDFRNLCKMDVANGVINFQRTILSAQVQRVGQNL 253
Score = 73 (30.8 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 327 FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG EKPE+I +L++IEK P+
Sbjct: 287 FLIGQGMEKPEVIDELLNIEKNPQ 310
>UNIPROTKB|E2RGS6 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AAEX03003383 RefSeq:XP_536533.1
ProteinModelPortal:E2RGS6 Ensembl:ENSCAFT00000016731 GeneID:479397
KEGG:cfa:479397 NextBio:20854586 Uniprot:E2RGS6
Length = 480
Score = 287 (106.1 bits), Expect = 6.9e-27, Sum P(2) = 6.9e-27
Identities = 61/127 (48%), Positives = 79/127 (62%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS D N E+ Y +LN LP DI+V+AW+PV +SA
Sbjct: 126 VISLDLRSHFPEGSTSEDSNLKNEVNDVAKEIRYTHILNRVLPPDIRVLAWAPVEPSFSA 185
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R V A V
Sbjct: 186 RFSCLERTYRYFFPRADLDIITMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTVLFAQV 245
Query: 306 TSAWQNV 312
Q++
Sbjct: 246 ELVGQSL 252
Score = 74 (31.1 bits), Expect = 6.9e-27, Sum P(2) = 6.9e-27
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 327 FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG EKPEII +L++IEK P+
Sbjct: 286 FLIGQGMEKPEIIDELLNIEKNPQ 309
>MGI|MGI:1914299 [details] [associations]
symbol:Pus3 "pseudouridine synthase 3" species:10090 "Mus
musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IDA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IDA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 MGI:MGI:1914299 GO:GO:0005634 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 UniGene:Mm.482285 GO:GO:0031119
KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG OMA:NHAVKTH EMBL:AF266505
EMBL:AK079095 EMBL:BC029253 IPI:IPI00331619 RefSeq:NP_075781.3
UniGene:Mm.425574 ProteinModelPortal:Q9JI38 SMR:Q9JI38
STRING:Q9JI38 PhosphoSite:Q9JI38 PRIDE:Q9JI38
Ensembl:ENSMUST00000034615 GeneID:67049 KEGG:mmu:67049
UCSC:uc009oth.2 GeneTree:ENSGT00510000047444 InParanoid:Q9JI38
BRENDA:4.2.1.70 NextBio:323424 Bgee:Q9JI38 CleanEx:MM_PUS3
Genevestigator:Q9JI38 GermOnline:ENSMUSG00000032103 Uniprot:Q9JI38
Length = 481
Score = 289 (106.8 bits), Expect = 8.2e-27, Sum P(2) = 8.2e-27
Identities = 56/97 (57%), Positives = 71/97 (73%)
Query: 211 ESDD--NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAM 268
E+DD E+ Y +LN LP DI+V+AW+PV +SARF CL R Y+Y+FP+A LDI M
Sbjct: 151 EADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIATM 210
Query: 269 HKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 211 NYAAQKYVGTHDFRNLCKMDVANGVINFQRTILCAQV 247
Score = 71 (30.1 bits), Expect = 8.2e-27, Sum P(2) = 8.2e-27
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 327 FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG EKPEII +L++I+K P+
Sbjct: 288 FLIGQGMEKPEIIDELLNIQKNPQ 311
>UNIPROTKB|Q9BZE2 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0005634 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG EMBL:AF325689 EMBL:AK055702
EMBL:AK314251 EMBL:BC004822 EMBL:BC013427 IPI:IPI00306260
RefSeq:NP_112597.3 UniGene:Hs.660922 ProteinModelPortal:Q9BZE2
SMR:Q9BZE2 STRING:Q9BZE2 PhosphoSite:Q9BZE2 DMDM:126302589
PaxDb:Q9BZE2 PRIDE:Q9BZE2 DNASU:83480 Ensembl:ENST00000227474
Ensembl:ENST00000530811 GeneID:83480 KEGG:hsa:83480 UCSC:uc001qcy.2
GeneCards:GC11M125763 H-InvDB:HIX0010246 HGNC:HGNC:25461
HPA:HPA038040 neXtProt:NX_Q9BZE2 PharmGKB:PA134874048
InParanoid:Q9BZE2 OMA:NHAVKTH PhylomeDB:Q9BZE2 GenomeRNAi:83480
NextBio:72425 ArrayExpress:Q9BZE2 Bgee:Q9BZE2 CleanEx:HS_PUS3
Genevestigator:Q9BZE2 GermOnline:ENSG00000110060 Uniprot:Q9BZE2
Length = 481
Score = 283 (104.7 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 60/127 (47%), Positives = 81/127 (63%)
Query: 196 VVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVPEKYS 244
V++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV +S
Sbjct: 127 VISLDLRSQFPR-GRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFS 185
Query: 245 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAG 304
ARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R + A
Sbjct: 186 ARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQ 245
Query: 305 VTSAWQN 311
V Q+
Sbjct: 246 VQLVGQS 252
Score = 74 (31.1 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 327 FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG EKPEII +L++IEK P+
Sbjct: 287 FLIGQGMEKPEIIDELLNIEKNPQ 310
>RGD|1310757 [details] [associations]
symbol:Pus3 "pseudouridylate synthase 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISO] [GO:0031119
"tRNA pseudouridine synthesis" evidence=IEA;ISO] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 RGD:1310757
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:BC158693 EMBL:CH474007
IPI:IPI00194825 RefSeq:NP_001101604.1 UniGene:Rn.22763
STRING:B0BN58 Ensembl:ENSRNOT00000017648 GeneID:315554
KEGG:rno:315554 UCSC:RGD:1310757 NextBio:669414
Genevestigator:B0BN58 Uniprot:B0BN58
Length = 479
Score = 281 (104.0 bits), Expect = 4.3e-26, Sum P(2) = 4.3e-26
Identities = 59/126 (46%), Positives = 78/126 (61%)
Query: 196 VVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 245
V++L +RS+ + D N E+ Y +LN LP DI+V+AW+P +SA
Sbjct: 126 VISLDLRSQFPRSRDSEDSNLKDGADDIAKEIRYAHILNRVLPADIRVLAWAPAEPSFSA 185
Query: 246 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
RF CL R Y+Y+FP A LDI M+ AAQ VGTHDFRNLCKM+V NGV NF+R + A V
Sbjct: 186 RFSCLERTYRYFFPCADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSAQV 245
Query: 306 TSAWQN 311
+ Q+
Sbjct: 246 QTVAQS 251
Score = 74 (31.1 bits), Expect = 4.3e-26, Sum P(2) = 4.3e-26
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 327 FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG EKPEII +L++IEK P+
Sbjct: 286 FLIGQGMEKPEIIDELLNIEKNPQ 309
>UNIPROTKB|F1RVF1 [details] [associations]
symbol:LOC100739830 "tRNA pseudouridine synthase"
species:9823 "Sus scrofa" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047444 OMA:CQVISID
Ensembl:ENSSSCT00000012144 Uniprot:F1RVF1
Length = 479
Score = 281 (104.0 bits), Expect = 5.5e-26, Sum P(2) = 5.5e-26
Identities = 56/106 (52%), Positives = 73/106 (68%)
Query: 210 EESDD--NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDA 267
+E +D E+ Y +LN LP DI+V+AW+PV +SARF CL R Y+Y+FP A LDI
Sbjct: 148 DEVNDATKEIRYTHILNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPHADLDIVT 207
Query: 268 MHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ 313
M+ AAQ VGTHDFRNLCKM+V NGV NF+R + A V Q+++
Sbjct: 208 MNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSAQVQLLSQSLE 253
Score = 73 (30.8 bits), Expect = 5.5e-26, Sum P(2) = 5.5e-26
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 327 FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG EKPE+I +L++IEK P+
Sbjct: 286 FLIGQGMEKPEVIDELLNIEKNPQ 309
>UNIPROTKB|F1S759 [details] [associations]
symbol:LOC100739830 "tRNA pseudouridine synthase"
species:9823 "Sus scrofa" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 OMA:NHAVKTH GeneTree:ENSGT00510000047444
EMBL:CU928873 RefSeq:XP_003482688.1 Ensembl:ENSSSCT00000016588
GeneID:100739830 KEGG:ssc:100739830 Uniprot:F1S759
Length = 479
Score = 281 (104.0 bits), Expect = 5.5e-26, Sum P(2) = 5.5e-26
Identities = 56/106 (52%), Positives = 73/106 (68%)
Query: 210 EESDD--NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDA 267
+E +D E+ Y +LN LP DI+V+AW+PV +SARF CL R Y+Y+FP A LDI
Sbjct: 148 DEVNDATKEIRYTHILNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPHADLDIVT 207
Query: 268 MHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQNVQ 313
M+ AAQ VGTHDFRNLCKM+V NGV NF+R + A V Q+++
Sbjct: 208 MNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSAQVQLLSQSLE 253
Score = 73 (30.8 bits), Expect = 5.5e-26, Sum P(2) = 5.5e-26
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 327 FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG EKPE+I +L++IEK P+
Sbjct: 286 FLIGQGMEKPEVIDELLNIEKNPQ 309
>WB|WBGene00006473 [details] [associations]
symbol:tag-124 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:Z47075 RefSeq:NP_496062.3
GeneID:174509 KEGG:cel:CELE_E02H1.3 CTD:174509 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
OMA:NHAVKTH GeneTree:ENSGT00510000047444 PIR:T20413
ProteinModelPortal:Q09524 SMR:Q09524 STRING:Q09524
EnsemblMetazoa:E02H1.3 UCSC:E02H1.3.1 WormBase:E02H1.3
InParanoid:Q09524 NextBio:884332 Uniprot:Q09524
Length = 402
Score = 220 (82.5 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 46/114 (40%), Positives = 70/114 (61%)
Query: 211 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 270
++ ELPY+KMLN LP+ I+V AW+PV + ++ARFDC R YKY F +A L+++ M +
Sbjct: 124 KASGEELPYVKMLNGVLPKTIRVFAWAPVAQTFNARFDCNRRTYKYSFAKADLNLEKMRQ 183
Query: 271 AAQYLVGTHDFRNLCK--MNVGNGVVNFKRLVTHAGVTSAWQNVQFNDIKEVVD 322
A+ LVG HDF N C+ MN + ++ R V V + + ND+ +V+
Sbjct: 184 GAELLVGEHDFSNFCQIDMNEKRLLQSYVRKVYEVKVEQVSTHPE-NDMYSMVE 236
Score = 74 (31.1 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 330 GQGNEKPEIIQQLVDIEKYPRIKSAQFPWSSTGATTPNELFRRVFLLSFLAW-VDQYRIR 388
G+ NE+P +I QL+D++KYP Q+ +S TP LF + + W V Y ++
Sbjct: 260 GRENEQPSLISQLLDLKKYP--SRPQYTLASD---TPLCLFDCGYKSEDVEWKVHDYTLK 314
Query: 389 QT 390
T
Sbjct: 315 ST 316
>SGD|S000001895 [details] [associations]
symbol:DEG1 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IDA;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0016853 "isomerase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 SGD:S000001895 GO:GO:0005634 GO:GO:0005737 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 BRENDA:5.4.99.12 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
GeneTree:ENSGT00510000047444 EMBL:AY693197 PIR:S14145
RefSeq:NP_116655.1 ProteinModelPortal:P31115 SMR:P31115
DIP:DIP-5151N IntAct:P31115 MINT:MINT-531752 STRING:P31115
PaxDb:P31115 PeptideAtlas:P31115 PRIDE:P31115 EnsemblFungi:YFL001W
GeneID:850550 KEGG:sce:YFL001W CYGD:YFL001w OMA:KFSRCGR
OrthoDB:EOG46T69C NextBio:966327 Genevestigator:P31115
GermOnline:YFL001W Uniprot:P31115
Length = 442
Score = 251 (93.4 bits), Expect = 7.1e-19, P = 7.1e-19
Identities = 62/168 (36%), Positives = 90/168 (53%)
Query: 196 VVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V++L++RS LT + +D E+PY+ +LN LP DI++ V P P + ARF C+
Sbjct: 160 VISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPNFDARFSCV 218
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
R+YKY F L+I+ M KAA Y VG DFRN CK++ + NFKR + + + +
Sbjct: 219 HRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSE 278
Query: 311 NVQFNDIK------EVVDSEPS--FKKGQGNEKPEIIQQLVDIEKYPR 350
D+ V + F GQ E PEI+ +L DIEK P+
Sbjct: 279 TFYCFDLVGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQ 326
>FB|FBgn0034703 [details] [associations]
symbol:CG3045 species:7227 "Drosophila melanogaster"
[GO:0004730 "pseudouridylate synthase activity" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:AE013599 GO:GO:0003723 GO:GO:0008033
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047444
EMBL:AY058376 RefSeq:NP_611646.1 UniGene:Dm.4296 SMR:Q9W282
STRING:Q9W282 EnsemblMetazoa:FBtr0071787 GeneID:37531
KEGG:dme:Dmel_CG3045 UCSC:CG3045-RA FlyBase:FBgn0034703
InParanoid:Q9W282 OMA:CQVISID OrthoDB:EOG4N5TCH GenomeRNAi:37531
NextBio:804123 Uniprot:Q9W282
Length = 499
Score = 249 (92.7 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 66/175 (37%), Positives = 92/175 (52%)
Query: 196 VVTLKIRSKLTSPGEESD----DNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCL 250
V+++ +RSK P + D +E+ Y +LN LP++I+ VAW P+ YSARFDC+
Sbjct: 163 VISIDLRSK-HPPESQLDPTALSSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSARFDCV 221
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
R Y+Y+FP+ LDI AM KA LV DFRN CKM+V NGV N+ R + A V + Q
Sbjct: 222 SRTYRYYFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARVEACDQ 281
Query: 311 NVQFN---DIKEVVDSEPSFK-------------KGQGNEKPEIIQQLVDIEKYP 349
N D+ + +F GQ E P +I L+D+E P
Sbjct: 282 TNHTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKENPGVISDLLDVESNP 336
>CGD|CAL0000624 [details] [associations]
symbol:orf19.6297 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 CGD:CAL0000624 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:AACQ01000212
EMBL:AACQ01000211 RefSeq:XP_711136.1 RefSeq:XP_711154.1
ProteinModelPortal:Q59N30 STRING:Q59N30 GeneID:3647251
GeneID:3647265 KEGG:cal:CaO19.13676 KEGG:cal:CaO19.6297
Uniprot:Q59N30
Length = 489
Score = 247 (92.0 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 60/167 (35%), Positives = 90/167 (53%)
Query: 196 VVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCL 250
V+++ +RS +T + E DD E+ Y+ +LN NLP DIKV + P P+ + ARF CL
Sbjct: 197 VISINVRSNITLENQSNPEFDDLEIDYISVLNANLPSDIKVHSICLRPPPD-FDARFSCL 255
Query: 251 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGVTSAWQ 310
R+Y+Y F + LDI+ M++ A+ G HDFRN CK++ + NF R + + + Q
Sbjct: 256 SRHYRYIFRKQDLDIELMNQGAKLYQGIHDFRNFCKLDGSKQITNFVREIYQSQIIHLHQ 315
Query: 311 NVQFNDIK------EVVDSEPS--FKKGQGNEKPEIIQQLVDIEKYP 349
+ D+K V + F GQ E P II L+D K+P
Sbjct: 316 DYYCFDLKGSAFLWHQVRCMVAILFTIGQSLESPSIITDLMDTNKFP 362
>ASPGD|ASPL0000040109 [details] [associations]
symbol:AN3170 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=RCA] [GO:0004730 "pseudouridylate synthase activity"
evidence=RCA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:BN001306
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 HOGENOM:HOG000199032
EnsemblFungi:CADANIAT00009900 OMA:LWDCIFP Uniprot:C8VIE4
Length = 664
Score = 146 (56.5 bits), Expect = 2.4e-17, Sum P(3) = 2.4e-17
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 206 TSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQ 260
T E+ DD +ELPY+ +LN LP DI+V+AW P PE + AR+ C R+YKY+F Q
Sbjct: 287 TVADEDWDDIADELPYISLLNKALPEDIRVLAWCPNPPEDFDARYSCRERHYKYFFTQ 344
Score = 124 (48.7 bits), Expect = 2.4e-17, Sum P(3) = 2.4e-17
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 258 FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV 305
+ + LDIDAM +AA+Y G HDFRN CK++ + NF+R++ A +
Sbjct: 367 YREGWLDIDAMREAAKYFEGVHDFRNFCKVDTSKQIENFERIIYRADI 414
Score = 65 (27.9 bits), Expect = 2.4e-17, Sum P(3) = 2.4e-17
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 327 FKKGQGNEKPEIIQQLVDIEKYPR 350
F GQG E P ++++L+D+ K PR
Sbjct: 480 FLVGQGLESPSVVRELLDVTKNPR 503
>TAIR|locus:2009021 [details] [associations]
symbol:AT1G34150 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K01855 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000199032 EMBL:AF360187 EMBL:AY040002
IPI:IPI00521240 RefSeq:NP_564438.1 UniGene:At.19010
ProteinModelPortal:Q9C5K6 SMR:Q9C5K6 STRING:Q9C5K6 PaxDb:Q9C5K6
PRIDE:Q9C5K6 EnsemblPlants:AT1G34150.1 GeneID:840314
KEGG:ath:AT1G34150 TAIR:At1g34150 InParanoid:Q9C5K6 OMA:KFIGEHD
PhylomeDB:Q9C5K6 ProtClustDB:CLSN2688258 ArrayExpress:Q9C5K6
Genevestigator:Q9C5K6 Uniprot:Q9C5K6
Length = 446
Score = 237 (88.5 bits), Expect = 3.1e-17, P = 3.1e-17
Identities = 66/179 (36%), Positives = 92/179 (51%)
Query: 196 VVTLKIRSKLTSP---------GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 246
V+ L +RS+L SP G + E Y+++LN LP DI+V+ WSP P + AR
Sbjct: 155 VIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRALPDDIRVIGWSPAPIDFHAR 214
Query: 247 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVT----- 301
F C R YKY+F + L++ AM A + +G HDFRN CKM+V N V + R VT
Sbjct: 215 FSCYAREYKYFFWRQNLNLSAMDFAGKKFIGEHDFRNFCKMDVAN-VHCYTRRVTFFEVS 273
Query: 302 -----HAG---VTSAWQNVQF--NDIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYPR 350
H G T + F + I+ +V F GQG E ++I L+D +K PR
Sbjct: 274 PCQNSHEGDQLCTFTMRGSAFLWHQIRCMV--AVLFMIGQGVESVDVIDTLLDTKKTPR 330
>DICTYBASE|DDB_G0288909 [details] [associations]
symbol:pus3 "tRNA pseudouridylate synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0006396 "RNA
processing" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0004730 "pseudouridylate
synthase activity" evidence=ISS] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 dictyBase:DDB_G0288909 GO:GO:0005634 GO:GO:0005737
EMBL:AAFI02000126 GenomeReviews:CM000154_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008033 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0004730 KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
RefSeq:XP_636482.1 ProteinModelPortal:Q54I97 STRING:Q54I97
EnsemblProtists:DDB0231223 GeneID:8626865 KEGG:ddi:DDB_G0288909
InParanoid:Q54I97 OMA:PPYEMAS Uniprot:Q54I97
Length = 491
Score = 225 (84.3 bits), Expect = 9.6e-16, P = 9.6e-16
Identities = 41/88 (46%), Positives = 63/88 (71%)
Query: 213 DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAA 272
DD ELPY+KMLN LP +I+++AW+PVP ++ARF L R YKY+F GLD++ M +A+
Sbjct: 205 DDEELPYIKMLNGVLPPEIRILAWAPVPFHFNARFSTLSRTYKYFFNPNGLDLNLMKEAS 264
Query: 273 QYLVGTHDFRNLCKMNVGNGVVNFKRLV 300
+ +G H++ N CK++V V +F R++
Sbjct: 265 KLYLGEHNYINFCKIDVN--VKSFMRVI 290
>POMBASE|SPAC25B8.05 [details] [associations]
symbol:SPAC25B8.05 "tRNA-pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=ISO]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PomBase:SPAC25B8.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GO:GO:0003723 GO:GO:0016829 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000199032 OMA:KFSRCGR OrthoDB:EOG46T69C PIR:T50192
RefSeq:NP_594465.1 ProteinModelPortal:Q9UTB3 STRING:Q9UTB3
EnsemblFungi:SPAC25B8.05.1 GeneID:2541578 KEGG:spo:SPAC25B8.05
NextBio:20802672 Uniprot:Q9UTB3
Length = 450
Score = 189 (71.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 51/154 (33%), Positives = 78/154 (50%)
Query: 212 SDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF----PQAGLDIDA 267
S+ + Y +LN LP DI++ ++ PE + ARF C R+YKY F P LDID
Sbjct: 166 SERRPIIYCDVLNRLLPADIRITGYAFPPEGFDARFSCKQRHYKYLFTKDYPGGSLDIDR 225
Query: 268 MHKAAQYLVGTHDFRNLCKMNVGNGVVNFKRLVTHAGV------TSAW----QNVQF--N 315
M++AA +G HDFRN CK++ + N+ R + + V T + Q F +
Sbjct: 226 MNEAAALYLGEHDFRNFCKIDASKQITNYHRRILSSKVICIDPSTGLYAFDLQGTAFLWH 285
Query: 316 DIKEVVDSEPSFKKGQGNEKPEIIQQLVDIEKYP 349
++ ++ F GQ E +I L+DI+K P
Sbjct: 286 QVRCMMAI--LFLIGQKLEPASLINDLLDIKKVP 317
Score = 40 (19.1 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 434 LIEGEFDSRPGRILSETGKLAPRVFQHFSE------HSLRL 468
L + +FD+ + +++ APR+ +H E HSLR+
Sbjct: 332 LYDCDFDNIEWTLPTDSPTTAPRIAKHTYETIYHQWHSLRI 372
>FB|FBgn0022724 [details] [associations]
symbol:Taf8 "TBP-associated factor 8" species:7227
"Drosophila melanogaster" [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IDA] [GO:0009987
"cellular process" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0005669 "transcription factor TFIID complex" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] EMBL:AE014298
GO:GO:0045944 GO:GO:0006367 GO:GO:0005669 InterPro:IPR006565
Pfam:PF07524 SMART:SM00576 CTD:129685 eggNOG:NOG257256
GeneTree:ENSGT00390000017567 KO:K14649 OMA:TENLALH
InterPro:IPR019473 Pfam:PF10406 EMBL:Y15513 EMBL:AY071604
RefSeq:NP_523397.1 ProteinModelPortal:Q9VWY6 SMR:Q9VWY6
IntAct:Q9VWY6 MINT:MINT-863143 STRING:Q9VWY6 PaxDb:Q9VWY6
PRIDE:Q9VWY6 EnsemblMetazoa:FBtr0074514 GeneID:32792
KEGG:dme:Dmel_CG7128 FlyBase:FBgn0022724 InParanoid:Q9VWY6
OrthoDB:EOG4DZ0B5 PhylomeDB:Q9VWY6 GenomeRNAi:32792 NextBio:780406
Bgee:Q9VWY6 GermOnline:CG7128 Uniprot:Q9VWY6
Length = 328
Score = 179 (68.1 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 39/103 (37%), Positives = 55/103 (53%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVFP 152
+T ++ +I E+G +H++CEL+ R P + DV LALI +GI I LD Y ++ P
Sbjct: 43 LTQMLQALIWEIGNSAHNYCELSGRTMPTVGDVSLALINMGISISNLDPYMRKETHVPIP 102
Query: 153 PVAPSTQPKPLSILQAGVKQXXXXXXXXXXXXXXXXXAYIRTP 195
TQ +PLS+LQAG+K AYIRTP
Sbjct: 103 LPPQQTQQRPLSLLQAGIKAPHPHYVPSYFPPMPDPHAYIRTP 145
Score = 40 (19.1 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 24 GFDAADNAALETLVEICQA 42
G A N +LETL ++ QA
Sbjct: 31 GAGQASNHSLETLTQMLQA 49
>UNIPROTKB|G4MKS9 [details] [associations]
symbol:MGG_16154 "tRNA-pseudouridine synthase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
EMBL:CM001231 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
RefSeq:XP_003709381.1 ProteinModelPortal:G4MKS9
EnsemblFungi:MGG_16154T0 GeneID:12984466 KEGG:mgr:MGG_16154
Uniprot:G4MKS9
Length = 694
Score = 130 (50.8 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 35/103 (33%), Positives = 48/103 (46%)
Query: 236 WSPVPEKYSARFDCLFRNYKY---WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNG 292
+SPVP AR D + YK LD+DAM +AA+ G HDFRN CK++
Sbjct: 360 FSPVP----ARLDGVM-GYKEPGSTHKDGYLDLDAMREAARLFEGEHDFRNFCKIDASKQ 414
Query: 293 VVNFKRLVTHAGVTSAWQNVQFNDIKEVVDSEPSFKKGQGNEK 335
+ NFKRL+ A + + + D PS + Q K
Sbjct: 415 ISNFKRLIREASIVEVPEAASSLPYLDTPDFRPSGEDSQARPK 457
Score = 127 (49.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 29/58 (50%), Positives = 35/58 (60%)
Query: 209 GEESD-----DNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWFPQ 260
GEE D D E+ Y KMLN LP DI+V+AW P P +SAR C R Y+Y+F Q
Sbjct: 300 GEEDDAPYPADKEIKYCKMLNAVLPVDIRVLAWCPNPPPGFSARHSCHERQYRYFFTQ 357
Score = 73 (30.8 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 327 FKKGQGNEKPEIIQQLVDIEKYP 349
F GQ EKP I+ +L+DIEKYP
Sbjct: 481 FLVGQRLEKPSIVSELLDIEKYP 503
>MGI|MGI:1926879 [details] [associations]
symbol:Taf8 "TAF8 RNA polymerase II, TATA box binding
protein (TBP)-associated factorq" species:10090 "Mus musculus"
[GO:0001833 "inner cell mass cell proliferation" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005669 "transcription
factor TFIID complex" evidence=ISA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0045598 "regulation of fat cell differentiation"
evidence=ISA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=ISO] [GO:0051457 "maintenance of
protein location in nucleus" evidence=ISO] InterPro:IPR009072
MGI:MGI:1926879 GO:GO:0048471 GO:GO:0045893 GO:GO:0030154
GO:GO:0006351 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0045598
GO:GO:0051457 GO:GO:0001833 GO:GO:0005669 InterPro:IPR006565
Pfam:PF07524 SMART:SM00576 CTD:129685 eggNOG:NOG257256
GeneTree:ENSGT00390000017567 HOGENOM:HOG000007034
HOVERGEN:HBG105411 KO:K14649 OMA:TENLALH OrthoDB:EOG4V6ZH6
InterPro:IPR019473 Pfam:PF10406 EMBL:AF222802 EMBL:AK045108
EMBL:AK049949 EMBL:AK076486 EMBL:AK086656 EMBL:AK162110
EMBL:BC057895 IPI:IPI00459354 IPI:IPI00880809 IPI:IPI00881010
IPI:IPI00881023 IPI:IPI00881150 RefSeq:NP_071298.1
UniGene:Mm.275901 ProteinModelPortal:Q9EQH4 SMR:Q9EQH4
STRING:Q9EQH4 PhosphoSite:Q9EQH4 PRIDE:Q9EQH4 DNASU:63856
Ensembl:ENSMUST00000067103 GeneID:63856 KEGG:mmu:63856
UCSC:uc008cvh.1 UCSC:uc008cvi.1 UCSC:uc008cvj.1 InParanoid:Q9EQH4
NextBio:319779 Bgee:Q9EQH4 Genevestigator:Q9EQH4 Uniprot:Q9EQH4
Length = 308
Score = 126 (49.4 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 33/105 (31%), Positives = 49/105 (46%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 59 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 118
Query: 152 -PPVAPSTQPKPLSILQAGVKQXXXXXXXXXXXXXXXXXAYIRTP 195
PPV + QP L AG + YI+TP
Sbjct: 119 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTP 161
Score = 57 (25.1 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 22 EVGFDAADNAALETLVEICQA 42
E GF++A+ A++ETL E+ Q+
Sbjct: 45 EAGFESAEKASVETLTEMLQS 65
>RGD|1308423 [details] [associations]
symbol:Taf8 "TAF8 RNA polymerase II, TATA box binding protein
(TBP)-associated factor" species:10116 "Rattus norvegicus"
[GO:0001833 "inner cell mass cell proliferation" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005669 "transcription
factor TFIID complex" evidence=IEA;ISO] [GO:0045598 "regulation of
fat cell differentiation" evidence=IEA;ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA;ISO]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009072 RGD:1308423 GO:GO:0048471 GO:GO:0045893
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0045598 GO:GO:0051457
GO:GO:0001833 EMBL:CH473987 GO:GO:0005669 InterPro:IPR006565
Pfam:PF07524 SMART:SM00576 CTD:129685 GeneTree:ENSGT00390000017567
KO:K14649 OMA:TENLALH OrthoDB:EOG4V6ZH6 InterPro:IPR019473
Pfam:PF10406 IPI:IPI00371755 RefSeq:NP_001101667.1 UniGene:Rn.35557
Ensembl:ENSRNOT00000020499 GeneID:316216 KEGG:rno:316216
UCSC:RGD:1308423 NextBio:670552 Uniprot:D3ZY89
Length = 308
Score = 126 (49.4 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 33/105 (31%), Positives = 49/105 (46%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 59 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 118
Query: 152 -PPVAPSTQPKPLSILQAGVKQXXXXXXXXXXXXXXXXXAYIRTP 195
PPV + QP L AG + YI+TP
Sbjct: 119 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTP 161
Score = 57 (25.1 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 22 EVGFDAADNAALETLVEICQA 42
E GF++A+ A++ETL E+ Q+
Sbjct: 45 EAGFESAEKASVETLTEMLQS 65
>UNIPROTKB|A7MAZ4 [details] [associations]
symbol:TAF8 "Transcription initiation factor TFIID subunit
8" species:9913 "Bos taurus" [GO:0051457 "maintenance of protein
location in nucleus" evidence=IEA] [GO:0048471 "perinuclear region
of cytoplasm" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045598 "regulation
of fat cell differentiation" evidence=IEA] [GO:0005669
"transcription factor TFIID complex" evidence=IEA] [GO:0001833
"inner cell mass cell proliferation" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR009072
GO:GO:0048471 GO:GO:0045893 GO:GO:0030154 GO:GO:0006351
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0045598 GO:GO:0051457
GO:GO:0001833 GO:GO:0005669 InterPro:IPR006565 Pfam:PF07524
SMART:SM00576 EMBL:BC151255 IPI:IPI00706402 RefSeq:NP_001094670.1
UniGene:Bt.102140 STRING:A7MAZ4 PRIDE:A7MAZ4
Ensembl:ENSBTAT00000036067 GeneID:539938 KEGG:bta:539938 CTD:129685
eggNOG:NOG257256 GeneTree:ENSGT00390000017567 HOGENOM:HOG000007034
HOVERGEN:HBG105411 InParanoid:A7MAZ4 KO:K14649 OMA:TENLALH
OrthoDB:EOG4V6ZH6 NextBio:20878312 InterPro:IPR019473 Pfam:PF10406
Uniprot:A7MAZ4
Length = 310
Score = 126 (49.4 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 33/105 (31%), Positives = 49/105 (46%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQXXXXXXXXXXXXXXXXXAYIRTP 195
PPV + QP L AG + YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTP 163
Score = 57 (25.1 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 22 EVGFDAADNAALETLVEICQA 42
E GF++A+ A++ETL E+ Q+
Sbjct: 47 EAGFESAEKASVETLTEMLQS 67
>UNIPROTKB|E2RN76 [details] [associations]
symbol:TAF8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR009072 Gene3D:1.10.20.10 SUPFAM:SSF47113
InterPro:IPR006565 Pfam:PF07524 SMART:SM00576
GeneTree:ENSGT00390000017567 OMA:TENLALH InterPro:IPR019473
Pfam:PF10406 EMBL:AAEX03008324 Ensembl:ENSCAFT00000002559
Uniprot:E2RN76
Length = 310
Score = 126 (49.4 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 33/105 (31%), Positives = 49/105 (46%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQXXXXXXXXXXXXXXXXXAYIRTP 195
PPV + QP L AG + YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTP 163
Score = 57 (25.1 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 22 EVGFDAADNAALETLVEICQA 42
E GF++A+ A++ETL E+ Q+
Sbjct: 47 EAGFESAEKASVETLTEMLQS 67
>UNIPROTKB|Q7Z7C8 [details] [associations]
symbol:TAF8 "Transcription initiation factor TFIID subunit
8" species:9606 "Homo sapiens" [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0001833 "inner cell mass cell
proliferation" evidence=IEA] [GO:0005669 "transcription factor
TFIID complex" evidence=IDA] [GO:0045598 "regulation of fat cell
differentiation" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IDA]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR009072 GO:GO:0048471 GO:GO:0045893 GO:GO:0030154
GO:GO:0006351 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0045598
GO:GO:0051457 GO:GO:0001833 EMBL:AL513008 GO:GO:0005669
InterPro:IPR006565 Pfam:PF07524 SMART:SM00576 CTD:129685
eggNOG:NOG257256 HOGENOM:HOG000007034 HOVERGEN:HBG105411 KO:K14649
OMA:TENLALH OrthoDB:EOG4V6ZH6 InterPro:IPR019473 Pfam:PF10406
EMBL:AF465841 EMBL:AK057383 EMBL:AL512274 EMBL:BC119678
EMBL:BC119679 IPI:IPI00065313 IPI:IPI00878968 IPI:IPI00879798
RefSeq:NP_612639.2 UniGene:Hs.520122 ProteinModelPortal:Q7Z7C8
SMR:Q7Z7C8 IntAct:Q7Z7C8 STRING:Q7Z7C8 PhosphoSite:Q7Z7C8
DMDM:74723384 PaxDb:Q7Z7C8 PRIDE:Q7Z7C8 Ensembl:ENST00000372977
Ensembl:ENST00000372978 Ensembl:ENST00000372982
Ensembl:ENST00000456846 Ensembl:ENST00000494547 GeneID:129685
KEGG:hsa:129685 UCSC:uc003orr.3 UCSC:uc003ort.3 UCSC:uc003orv.1
GeneCards:GC06P042018 HGNC:HGNC:17300 HPA:HPA031734 MIM:609514
neXtProt:NX_Q7Z7C8 PharmGKB:PA162405144 ChiTaRS:TAF8
GenomeRNAi:129685 NextBio:82629 ArrayExpress:Q7Z7C8 Bgee:Q7Z7C8
CleanEx:HS_TAF8 Genevestigator:Q7Z7C8 Uniprot:Q7Z7C8
Length = 310
Score = 126 (49.4 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 33/105 (31%), Positives = 49/105 (46%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
Query: 152 -PPVAPSTQPKPLSILQAGVKQXXXXXXXXXXXXXXXXXAYIRTP 195
PPV + QP L AG + YI+TP
Sbjct: 121 APPV--TNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTP 163
Score = 57 (25.1 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 22 EVGFDAADNAALETLVEICQA 42
E GF++A+ A++ETL E+ Q+
Sbjct: 47 EAGFESAEKASVETLTEMLQS 67
>ZFIN|ZDB-GENE-040426-1013 [details] [associations]
symbol:taf8 "TAF8 RNA polymerase II, TATA box
binding protein (TBP)-associated factor" species:7955 "Danio rerio"
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009072 ZFIN:ZDB-GENE-040426-1013 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0006355
GO:GO:0006351 Gene3D:1.10.20.10 InterPro:IPR006565 Pfam:PF07524
SMART:SM00576 CTD:129685 eggNOG:NOG257256
GeneTree:ENSGT00390000017567 HOGENOM:HOG000007034
HOVERGEN:HBG105411 KO:K14649 OrthoDB:EOG4V6ZH6 InterPro:IPR019473
Pfam:PF10406 EMBL:BC049422 EMBL:BC065457 IPI:IPI00481674
IPI:IPI00882794 RefSeq:NP_956580.1 UniGene:Dr.159222 STRING:Q6P0T2
PRIDE:Q6P0T2 Ensembl:ENSDART00000039498 GeneID:393256
KEGG:dre:393256 InParanoid:Q6P0T2 NextBio:20814317 Bgee:Q6P0T2
Uniprot:Q6P0T2
Length = 308
Score = 120 (47.3 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 37/107 (34%), Positives = 50/107 (46%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF- 151
+T ++ I EVG + CE R P L+DV++ L+E+G + L YAKR R V
Sbjct: 63 LTEMMQSYITEVGRCAKANCEHTARSTPTLSDVVITLVEMGFNVDTLPVYAKRSQRMVIT 122
Query: 152 -PPV--APSTQPKPLSILQAGVKQXXXXXXXXXXXXXXXXXAYIRTP 195
PP+ AP PK L+ AG K+ YIRTP
Sbjct: 123 APPITNAPVV-PKSLT---AGQKRTHPAHIPSHFPDFPDPHTYIRTP 165
Score = 59 (25.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 22 EVGFDAADNAALETLVEICQA 42
E GFD+A+ A +ETL E+ Q+
Sbjct: 49 ECGFDSAEKAVVETLTEMMQS 69
>UNIPROTKB|C9J7M8 [details] [associations]
symbol:TAF8 "Transcription initiation factor TFIID subunit
8" species:9606 "Homo sapiens" [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR009072 GO:GO:0005634 Gene3D:1.10.20.10 SUPFAM:SSF47113
EMBL:AL513008 InterPro:IPR006565 Pfam:PF07524 SMART:SM00576
EMBL:AL512274 HGNC:HGNC:17300 ChiTaRS:TAF8 IPI:IPI00946323
ProteinModelPortal:C9J7M8 SMR:C9J7M8 STRING:C9J7M8
Ensembl:ENST00000472818 ArrayExpress:C9J7M8 Bgee:C9J7M8
Uniprot:C9J7M8
Length = 123
Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 93 VTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTV 150
+T ++ I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V
Sbjct: 61 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMV 118
>UNIPROTKB|F1NMN6 [details] [associations]
symbol:TAF8 "Transcription initiation factor TFIID subunit
8" species:9031 "Gallus gallus" [GO:0001833 "inner cell mass cell
proliferation" evidence=IEA] [GO:0005669 "transcription factor
TFIID complex" evidence=IEA] [GO:0045598 "regulation of fat cell
differentiation" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0051457
"maintenance of protein location in nucleus" evidence=IEA]
GO:GO:0048471 GO:GO:0045893 GO:GO:0045598 GO:GO:0051457
GO:GO:0005669 InterPro:IPR006565 Pfam:PF07524
GeneTree:ENSGT00390000017567 InterPro:IPR019473 Pfam:PF10406
IPI:IPI00579339 EMBL:AADN02066913 EMBL:AADN02066914
Ensembl:ENSGALT00000005533 OMA:AIREKSA ArrayExpress:F1NMN6
Uniprot:F1NMN6
Length = 239
Score = 124 (48.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 32/97 (32%), Positives = 45/97 (46%)
Query: 101 IKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF--PPVAPST 158
I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V PPV +
Sbjct: 1 ISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVETLPAYAKRSQRMVITAPPV--TN 58
Query: 159 QPKPLSILQAGVKQXXXXXXXXXXXXXXXXXAYIRTP 195
QP L AG + YI+TP
Sbjct: 59 QPVTPKALTAGQNKPHPSHIPGYFPEFPDPHTYIKTP 95
>UNIPROTKB|Q5ZMS1 [details] [associations]
symbol:TAF8 "Transcription initiation factor TFIID subunit
8" species:9031 "Gallus gallus" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0001833 "inner cell mass cell proliferation"
evidence=IEA] [GO:0005669 "transcription factor TFIID complex"
evidence=IEA] [GO:0045598 "regulation of fat cell differentiation"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0051457 "maintenance of protein
location in nucleus" evidence=IEA] GO:GO:0007275 GO:GO:0048471
GO:GO:0045893 GO:GO:0030154 GO:GO:0006351 GO:GO:0045598
GO:GO:0051457 GO:GO:0005669 InterPro:IPR006565 Pfam:PF07524
CTD:129685 eggNOG:NOG257256 HOGENOM:HOG000007034 HOVERGEN:HBG105411
KO:K14649 OrthoDB:EOG4V6ZH6 InterPro:IPR019473 Pfam:PF10406
EMBL:AJ719313 IPI:IPI00579339 RefSeq:NP_001026094.1
UniGene:Gga.22333 STRING:Q5ZMS1 GeneID:419929 KEGG:gga:419929
InParanoid:Q5ZMS1 NextBio:20822916 ArrayExpress:Q5ZMS1
Uniprot:Q5ZMS1
Length = 244
Score = 124 (48.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 32/97 (32%), Positives = 45/97 (46%)
Query: 101 IKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHGLDTYAKRPMRTVF--PPVAPST 158
I E+G + +CE R QP L+D+++ L+E+G + L YAKR R V PPV +
Sbjct: 6 ISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVETLPAYAKRSQRMVITAPPV--TN 63
Query: 159 QPKPLSILQAGVKQXXXXXXXXXXXXXXXXXAYIRTP 195
QP L AG + YI+TP
Sbjct: 64 QPVTPKALTAGQNKPHPSHIPGYFPEFPDPHTYIKTP 100
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 496 467 0.00098 118 3 11 22 0.38 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 624 (66 KB)
Total size of DFA: 304 KB (2157 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.29u 0.12s 37.41t Elapsed: 00:00:09
Total cpu time: 37.29u 0.12s 37.41t Elapsed: 00:00:09
Start: Thu Aug 15 11:07:35 2013 End: Thu Aug 15 11:07:44 2013