RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3604
         (496 letters)



>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
           (Xenopus laevis) [TaxId: 8355]}
          Length = 82

 Score = 26.6 bits (59), Expect = 2.0
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 90  KRAVTSVIGLVIKEVGGLSHDFCELANRQQPMLADVLLALIELGIPIHG 138
                 V+ + ++ V   +  + E A R+     DV+ AL   G  ++G
Sbjct: 32  YEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYG 80


>d1wiwa_ c.80.1.1 (A:) Glucose-6-phosphate isomerase-like protein
           TTHA1346 {Thermus thermophilus [TaxId: 274]}
          Length = 284

 Score = 27.9 bits (62), Expect = 2.8
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 17/104 (16%)

Query: 165 ILQAGVKQPHPPHIPP----------YLPLFPDPHAYIRTPVVTLKIRSKLTSPGEESDD 214
           +++ G +     HIPP          +L L       +R+    L    +   P    ++
Sbjct: 91  VVRVGFRPGVEVHIPPSPLAPYRYLRFLLLATGREEVLRSVDEALLEERRRLGPEVPVEE 150

Query: 215 NELPYL-KMLNNNLPRDIKVVAWSPVPEKYSARFDCLF-RNYKY 256
           N   +L   L   LP     + +SP+          LF R  K 
Sbjct: 151 NPAKFLAYTLLERLP-----LFYSPLFRPLEGAVQTLFARVAKS 189


>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator
          PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 76

 Score = 26.0 bits (57), Expect = 3.1
 Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 6/46 (13%)

Query: 1  MATSKDTNRSLLKSSVVALLAEVGFDAADNAALETLVEICQACKYT 46
          M+  K   R+ +  +    L E G          ++ E+  A   T
Sbjct: 1  MSDKKTQTRARILGAATQALLERGAVEP------SVGEVMGAAGLT 40


>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 310

 Score = 26.4 bits (58), Expect = 7.6
 Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 6/46 (13%)

Query: 219 YLKMLNNNLPRDIKVV-----AWSPVPEKYSARFDCLF-RNYKYWF 258
           YL  L + L   I+++       S +     +  +    R    W+
Sbjct: 167 YLTTLGDKLNPSIQIMWTGDRVISDITRDGISWINERIKRPAYIWW 212


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,847,748
Number of extensions: 88249
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 4
Length of query: 496
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 407
Effective length of database: 1,185,626
Effective search space: 482549782
Effective search space used: 482549782
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)