BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3606
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O61735|CLOCK_DROME Circadian locomoter output cycles protein kaput OS=Drosophila
melanogaster GN=Clk PE=2 SV=3
Length = 1027
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/50 (80%), Positives = 47/50 (94%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLKNYN 78
RKSRNLSEKKRRDQFN L+N+L ++ST++RKMDKSTVLKSTIAFLKN+N
Sbjct: 17 RKSRNLSEKKRRDQFNSLVNDLSALISTSSRKMDKSTVLKSTIAFLKNHN 66
>sp|Q8QGQ6|CLOCK_CHICK Circadian locomoter output cycles protein kaput OS=Gallus gallus
GN=CLOCK PE=1 SV=2
Length = 875
Score = 83.6 bits (205), Expect = 4e-16, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 1 MSTHQLEQSFNRNSDDTMD---DTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTN 57
+STH++ +RN D + DDKD +KR SRN SEKKRRDQFN+LI EL +M+ N
Sbjct: 5 ISTHKMSSIADRNDGSIFDGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN 64
Query: 58 NRKMDKSTVLKSTIAFLKNY 77
RKMDKSTVL+ +I FL+ +
Sbjct: 65 ARKMDKSTVLQKSIDFLRKH 84
>sp|Q6YGZ4|CLOCK_TYTAL Circadian locomoter output cycles protein kaput OS=Tyto alba
GN=CLOCK PE=2 SV=1
Length = 851
Score = 83.2 bits (204), Expect = 5e-16, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 1 MSTHQLEQSFNRNSDDTMD---DTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTN 57
+STH++ +RN D + DDKD +KR SRN SEKKRRDQFN+LI EL +M+ N
Sbjct: 5 ISTHKMSSIADRNDGSIFDGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN 64
Query: 58 NRKMDKSTVLKSTIAFLKNY 77
RKMDKSTVL+ +I FL+ +
Sbjct: 65 ARKMDKSTVLQKSIDFLRKH 84
>sp|Q99743|NPAS2_HUMAN Neuronal PAS domain-containing protein 2 OS=Homo sapiens GN=NPAS2
PE=2 SV=3
Length = 824
Score = 82.0 bits (201), Expect = 9e-16, Method: Composition-based stats.
Identities = 37/59 (62%), Positives = 46/59 (77%)
Query: 20 DTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLKNYN 78
D D+KD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDK+TVL+ I FL+ +N
Sbjct: 2 DEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHN 60
>sp|P97460|NPAS2_MOUSE Neuronal PAS domain-containing protein 2 OS=Mus musculus GN=Npas2
PE=1 SV=1
Length = 816
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/59 (62%), Positives = 46/59 (77%)
Query: 20 DTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLKNYN 78
D D+KD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDK+TVL+ I FL+ +N
Sbjct: 2 DEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHN 60
>sp|Q5ZQU2|NPAS2_CHICK Neuronal PAS domain-containing protein 2 OS=Gallus gallus
GN=NPAS2 PE=2 SV=1
Length = 815
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/59 (62%), Positives = 46/59 (77%)
Query: 20 DTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLKNYN 78
D D+KD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDK+TVL+ I FL+ +N
Sbjct: 2 DEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHN 60
>sp|Q91YB2|CLOCK_SPACA Circadian locomoter output cycles protein kaput OS=Spalax carmeli
GN=Clock PE=2 SV=1
Length = 865
Score = 79.0 bits (193), Expect = 9e-15, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 16 DTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
D + + DDKD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDKSTVL+ +I FL+
Sbjct: 23 DGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLR 82
Query: 76 NY 77
+
Sbjct: 83 KH 84
>sp|Q9WVS9|CLOCK_RAT Circadian locomoter output cycles protein kaput OS=Rattus
norvegicus GN=Clock PE=2 SV=1
Length = 862
Score = 79.0 bits (193), Expect = 9e-15, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 16 DTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
D + + DDKD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDKSTVL+ +I FL+
Sbjct: 23 DGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLR 82
Query: 76 NY 77
+
Sbjct: 83 KH 84
>sp|O08785|CLOCK_MOUSE Circadian locomoter output cycles protein kaput OS=Mus musculus
GN=Clock PE=1 SV=1
Length = 855
Score = 79.0 bits (193), Expect = 9e-15, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 16 DTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
D + + DDKD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDKSTVL+ +I FL+
Sbjct: 23 DGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLR 82
Query: 76 NY 77
+
Sbjct: 83 KH 84
>sp|Q91YB0|CLOCK_NANGA Circadian locomoter output cycles protein kaput OS=Nannospalax
galili GN=Clock PE=1 SV=1
Length = 865
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 16 DTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
D + + DDKD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDKSTVL+ +I FL+
Sbjct: 23 DGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLR 82
Query: 76 NY 77
+
Sbjct: 83 KH 84
>sp|Q5RAK8|CLOCK_PONAB Circadian locomoter output cycles protein kaput OS=Pongo abelii
GN=CLOCK PE=2 SV=1
Length = 846
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 16 DTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
D + + DDKD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDKSTVL+ +I FL+
Sbjct: 23 DGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLR 82
Query: 76 NY 77
+
Sbjct: 83 KH 84
>sp|O15516|CLOCK_HUMAN Circadian locomoter output cycles protein kaput OS=Homo sapiens
GN=CLOCK PE=1 SV=1
Length = 846
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 16 DTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
D + + DDKD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDKSTVL+ +I FL+
Sbjct: 23 DGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLR 82
Query: 76 NY 77
+
Sbjct: 83 KH 84
>sp|Q91YA8|CLOCK_SPAJD Circadian locomoter output cycles protein kaput OS=Spalax judaei
GN=Clock PE=2 SV=1
Length = 865
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/62 (58%), Positives = 48/62 (77%)
Query: 16 DTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
D + + DDK+ +KR SRN SEKKRRDQFN+LI EL +M+ N R+MDKSTVL+ +I FL+
Sbjct: 23 DGLVEEDDKNKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNAREMDKSTVLQKSIDFLR 82
Query: 76 NY 77
+
Sbjct: 83 KH 84
>sp|Q8WYA1|BMAL2_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Homo sapiens GN=ARNTL2 PE=1 SV=2
Length = 636
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNGLYDCLI 85
R++ + +EK+RRD+ N LI EL M+ N RK+DK TVL+ + L++ GL + +
Sbjct: 109 REAHSQTEKRRRDKMNNLIEELSAMIPQCNPMARKLDKLTVLRMAVQHLRSLKGLTNSYV 168
Query: 86 MIGYFTNF 93
Y +F
Sbjct: 169 GSNYRPSF 176
>sp|O61734|CYCL_DROME Protein cycle OS=Drosophila melanogaster GN=cyc PE=2 SV=2
Length = 413
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 8 QSFNRNSDDTMDDTDDKDDSKRKS-----RNLSE--KKRRDQFNMLINELCTMVS---TN 57
Q F N ++ D+ D++ S R S +N SE K+RRD+ N INEL +M+
Sbjct: 4 QEFCENMEEIEDENYDEEKSARTSDENRKQNHSEIEKRRRDKMNTYINELSSMIPMCFAM 63
Query: 58 NRKMDKSTVLKSTIAFLKNYNG 79
RK+DK TVL+ + L+ G
Sbjct: 64 QRKLDKLTVLRMAVQHLRGIRG 85
>sp|Q8QGQ7|BMAL2_CHICK Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Gallus gallus GN=ARNTL2 PE=1 SV=1
Length = 622
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNGLYDCLI 85
R++ + +EK+RRD+ N LI EL M+ N RK+DK TVL+ + LK+ G
Sbjct: 94 REAHSQTEKRRRDKMNNLIEELSAMIPQCNPMARKLDKLTVLRMAVQHLKSLKGSTSSYT 153
Query: 86 MIGYFTNF 93
+ Y +F
Sbjct: 154 EVRYKPSF 161
>sp|A0MLS5|BMAL1_HORSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Equus caballus GN=ARNTL PE=2 SV=1
Length = 626
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 2 STHQLEQSFNRNSDDT---MDDTDDKDDSK--RKSRNLSEKKRRDQFNMLINELCTMVST 56
S+ ++S + + DD ++ T+ + K R++ + EK+RRD+ N I+EL ++V T
Sbjct: 42 SSTDYQESMDTDKDDPHGRLEYTEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPT 101
Query: 57 NN---RKMDKSTVLKSTIAFLKNYNG 79
N RK+DK TVL+ + +K G
Sbjct: 102 CNAMSRKLDKLTVLRMAVQHMKTLRG 127
>sp|Q9WTL8|BMAL1_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Mus musculus GN=Arntl PE=1 SV=2
Length = 632
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 6 LEQSFNRNSDD-----TMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN-- 58
E+S + + DD + + + R++ + EK+RRD+ N I+EL ++V T N
Sbjct: 53 FEESMDTDKDDPHGRLEYAEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAM 112
Query: 59 -RKMDKSTVLKSTIAFLKNYNG 79
RK+DK TVL+ + +K G
Sbjct: 113 SRKLDKLTVLRMAVQHMKTLRG 134
>sp|Q91YA9|BMAL1_NANGA Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Nannospalax galili GN=Arntl PE=1 SV=1
Length = 626
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 2 STHQLEQSFNRNSDDT---MDDTDDKDDSK--RKSRNLSEKKRRDQFNMLINELCTMVST 56
S+ ++S + + DD ++ T+ + K R++ + EK+RRD+ N I+EL ++V T
Sbjct: 42 SSTDYQESMDTDKDDPHGRLEYTEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPT 101
Query: 57 NN---RKMDKSTVLKSTIAFLKNYNG 79
N RK+DK TVL+ + +K G
Sbjct: 102 CNAMSRKLDKLTVLRMAVQHMKTLRG 127
>sp|Q5R4T2|BMAL1_PONAB Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Pongo abelii GN=ARNTL PE=2 SV=1
Length = 625
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNGLYDCLI 85
R++ + EK+RRD+ N I+EL ++V T N RK+DK TVL+ + +K G +
Sbjct: 74 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYT 133
Query: 86 MIGYFTNF 93
Y F
Sbjct: 134 EANYKPTF 141
>sp|Q9EPW1|BMAL1_RAT Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Rattus norvegicus GN=Arntl PE=2 SV=4
Length = 626
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNG 79
R++ + EK+RRD+ N I+EL ++V T N RK+DK TVL+ + +K G
Sbjct: 74 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 127
>sp|O00327|BMAL1_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Homo sapiens GN=ARNTL PE=1 SV=2
Length = 626
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNGLYDCLI 85
R++ + EK+RRD+ N I+EL ++V T N RK+DK TVL+ + +K G +
Sbjct: 74 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYT 133
Query: 86 MIGYFTNF 93
Y F
Sbjct: 134 EANYKPTF 141
>sp|O88529|BMAL1_MESAU Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Mesocricetus auratus GN=ARNTL PE=2 SV=1
Length = 626
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNG 79
R++ + EK+RRD+ N I+EL ++V T N RK+DK TVL+ + +K G
Sbjct: 74 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 127
>sp|Q9I8T7|BMAL1_CHICK Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Gallus gallus GN=ARNTL PE=1 SV=1
Length = 633
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNG 79
R++ + EK+RRD+ N I+EL ++V T N RK+DK TVL+ + +K G
Sbjct: 81 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 134
>sp|Q6YGZ5|BMAL1_TYTAL Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Tyto alba GN=ARNTL PE=2 SV=1
Length = 633
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNG 79
R++ + EK+RRD+ N I+EL ++V T N RK+DK TVL+ + +K G
Sbjct: 81 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 134
>sp|Q78E60|ARNT2_RAT Aryl hydrocarbon receptor nuclear translocator 2 OS=Rattus
norvegicus GN=Arnt2 PE=2 SV=1
Length = 712
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 12 RNSDDTMDDTDDKDDSKRKSRNLS--EKKRRDQFNMLINELCTMVSTNN---RKMDKSTV 66
R S DD D + SK N S E++RR++ I EL MV T + RK DK T+
Sbjct: 46 RRSGMDFDDEDGEGPSKFSRENHSEIERRRRNKMTQYITELSDMVPTCSALARKPDKLTI 105
Query: 67 LKSTIAFLKNYNG 79
L+ ++ +K+ G
Sbjct: 106 LRMAVSHMKSMRG 118
>sp|Q61324|ARNT2_MOUSE Aryl hydrocarbon receptor nuclear translocator 2 OS=Mus musculus
GN=Arnt2 PE=1 SV=2
Length = 712
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 12 RNSDDTMDDTDDKDDSKRKSRNLS--EKKRRDQFNMLINELCTMVSTNN---RKMDKSTV 66
R S DD D + SK N S E++RR++ I EL MV T + RK DK T+
Sbjct: 46 RRSGMDFDDEDGEGPSKFSRENHSEIERRRRNKMTQYITELSDMVPTCSALARKPDKLTI 105
Query: 67 LKSTIAFLKNYNG 79
L+ ++ +K+ G
Sbjct: 106 LRMAVSHMKSMRG 118
>sp|Q9HBZ2|ARNT2_HUMAN Aryl hydrocarbon receptor nuclear translocator 2 OS=Homo sapiens
GN=ARNT2 PE=1 SV=2
Length = 717
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 12 RNSDDTMDDTDDKDDSKRKSRNLS--EKKRRDQFNMLINELCTMVSTNN---RKMDKSTV 66
R S DD D + SK N S E++RR++ I EL MV T + RK DK T+
Sbjct: 46 RRSGMDFDDEDGEGPSKFSRENHSEIERRRRNKMTQYITELSDMVPTCSALARKPDKLTI 105
Query: 67 LKSTIAFLKNYNG 79
L+ ++ +K+ G
Sbjct: 106 LRMAVSHMKSMRG 118
>sp|Q9DG12|ARNT2_DANRE Aryl hydrocarbon receptor nuclear translocator 2 OS=Danio rerio
GN=arnt2 PE=1 SV=2
Length = 737
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 10 FNRNSDDTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTV 66
F+R DD + DK+ R++ + E++RR++ I EL MV T + RK DK T+
Sbjct: 63 FSRYDDDQI--PGDKERYARENHSEIERRRRNKMTQYITELSDMVPTCSALARKPDKLTI 120
Query: 67 LKSTIAFLKNYNG 79
L+ ++ +K+ G
Sbjct: 121 LRMAVSHMKSMRG 133
>sp|Q2VPD4|BMAL2_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Mus musculus GN=Arntl2 PE=2 SV=2
Length = 579
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTN---NRKMDKSTVLKSTIAFLKNYNGL 80
R++ + EK+RRD+ N LI +L +M+ + K+DK +VL+ + +L++ G+
Sbjct: 50 REAHSQMEKRRRDKMNHLIQKLSSMIPPHIPTAHKLDKLSVLRRAVQYLRSLRGM 104
>sp|P53762|ARNT_MOUSE Aryl hydrocarbon receptor nuclear translocator OS=Mus musculus
GN=Arnt PE=1 SV=3
Length = 791
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 7 EQSFNRNSDDTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDK 63
++ F R+ D+ + DK+ R++ + E++RR++ I EL MV T + RK DK
Sbjct: 71 KERFARSDDE--QSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDK 128
Query: 64 STVLKSTIAFLKNYNG 79
T+L+ ++ +K+ G
Sbjct: 129 LTILRMAVSHMKSLRG 144
>sp|Q9BE97|ARNT_BOVIN Aryl hydrocarbon receptor nuclear translocator OS=Bos taurus
GN=ARNT PE=2 SV=1
Length = 790
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 7 EQSFNRNSDDTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDK 63
++ F R+ D+ + DK+ R++ + E++RR++ I EL MV T + RK DK
Sbjct: 71 KERFARSDDE--QSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDK 128
Query: 64 STVLKSTIAFLKNYNG 79
T+L+ ++ +K+ G
Sbjct: 129 LTILRMAVSHMKSLRG 144
>sp|P27540|ARNT_HUMAN Aryl hydrocarbon receptor nuclear translocator OS=Homo sapiens
GN=ARNT PE=1 SV=1
Length = 789
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 7 EQSFNRNSDDTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDK 63
++ F R+ D+ + DK+ R++ + E++RR++ I EL MV T + RK DK
Sbjct: 71 KERFARSDDE--QSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDK 128
Query: 64 STVLKSTIAFLKNYNG 79
T+L+ ++ +K+ G
Sbjct: 129 LTILRMAVSHMKSLRG 144
>sp|P41739|ARNT_RAT Aryl hydrocarbon receptor nuclear translocator OS=Rattus norvegicus
GN=Arnt PE=1 SV=2
Length = 800
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 7 EQSFNRNSDDTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDK 63
++ F R+ D+ + DK+ R++ + E++RR++ I EL MV T + RK DK
Sbjct: 71 KERFARSDDE--QSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDK 128
Query: 64 STVLKSTIAFLKNYNG 79
T+L+ ++ +K+ G
Sbjct: 129 LTILRMAVSHMKSLRG 144
>sp|Q6GQ26|SRBP2_XENLA Sterol regulatory element-binding protein 2 OS=Xenopus laevis
GN=srebf2 PE=2 SV=1
Length = 1088
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 24 KDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
K+ +R + N+ EK+ R N I EL +V + KM KS VLK I ++K
Sbjct: 287 KEGERRTTHNIIEKRYRSSINDKIMELKDLVMGTDAKMHKSGVLKKAIDYIK 338
>sp|Q9DBX7|HEYL_MOUSE Hairy/enhancer-of-split related with YRPW motif-like protein
OS=Mus musculus GN=Heyl PE=1 SV=2
Length = 326
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVST-----NNRKMDKSTVLKSTIAFLK 75
+++K R + EK+RRD+ N ++EL +V T + K++K+ VL+ T+ LK
Sbjct: 43 ARKKRRGIIEKRRRDRINSSLSELRRLVPTAFEKQGSSKLEKAEVLQMTVDHLK 96
>sp|Q2NL18|HEYL_BOVIN Hairy/enhancer-of-split related with YRPW motif-like protein
OS=Bos taurus GN=HEYL PE=2 SV=3
Length = 328
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVST-----NNRKMDKSTVLKSTIAFLK 75
+++K R + EK+RRD+ N ++EL +V T + K++K+ VL+ T+ LK
Sbjct: 43 ARKKRRGIIEKRRRDRINSSLSELRRLVPTAFEKQGSSKLEKAEVLQMTVDHLK 96
>sp|O02748|ARNT_RABIT Aryl hydrocarbon receptor nuclear translocator OS=Oryctolagus
cuniculus GN=ARNT PE=2 SV=1
Length = 790
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 7 EQSFNRNSDDTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDK 63
++ F R+ D+ + DK+ R++ + E++RR++ I EL +V T + RK DK
Sbjct: 71 KERFARSDDE--QSSADKERLARENHSEIERRRRNKMTAYITELSDIVPTCSALARKPDK 128
Query: 64 STVLKSTIAFLKNYNG 79
T+L+ ++ +K+ G
Sbjct: 129 LTILRMAVSHMKSLRG 144
>sp|Q9NQ87|HEYL_HUMAN Hairy/enhancer-of-split related with YRPW motif-like protein
OS=Homo sapiens GN=HEYL PE=2 SV=2
Length = 328
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVST-----NNRKMDKSTVLKSTIAFLK 75
+++K R + EK+RRD+ N ++EL +V T + K++K+ VL+ T+ LK
Sbjct: 43 ARKKHRGIIEKRRRDRINSSLSELRRLVPTAFEKQGSSKLEKAEVLQMTVDHLK 96
>sp|Q7KM13|HEY_DROME Hairy/enhancer-of-split related with YRPW motif protein
OS=Drosophila melanogaster GN=Hey PE=2 SV=1
Length = 425
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVST-----NNRKMDKSTVLKSTIAFLKN 76
S++K R + EKKRRD+ N + EL +V + + K++K+ +L+ T+ LK+
Sbjct: 100 SRKKRRGVIEKKRRDRINSSLTELKRLVPSAYEKQGSAKLEKAEILQLTVEHLKS 154
>sp|O02219|AHA1_CAEEL Aryl hydrocarbon receptor nuclear translocator homolog
OS=Caenorhabditis elegans GN=aha-1 PE=1 SV=1
Length = 453
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 22 DDKDDSKRKSRNLSEKKRRDQFNMLINELCTMV---STNNRKMDKSTVLKSTIAFLKNYN 78
++K+ R++ + E++RR++ INEL MV ++ RK DK T+L+ ++ +K
Sbjct: 39 ENKERFARENHSEIERRRRNKMTHYINELAEMVPQCASLGRKPDKLTILRMAVSHMKGIR 98
Query: 79 G 79
G
Sbjct: 99 G 99
>sp|Q9QUS4|HEY2_MOUSE Hairy/enhancer-of-split related with YRPW motif protein 2 OS=Mus
musculus GN=Hey2 PE=1 SV=1
Length = 339
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVST-----NNRKMDKSTVLKSTIAFLK 75
+++K R + EK+RRD+ N ++EL +V T + K++K+ +L+ T+ LK
Sbjct: 48 ARKKRRGIIEKRRRDRINNSLSELRRLVPTAFEKQGSAKLEKAEILQMTVDHLK 101
>sp|Q9UBP5|HEY2_HUMAN Hairy/enhancer-of-split related with YRPW motif protein 2 OS=Homo
sapiens GN=HEY2 PE=1 SV=1
Length = 337
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVST-----NNRKMDKSTVLKSTIAFLK 75
+++K R + EK+RRD+ N ++EL +V T + K++K+ +L+ T+ LK
Sbjct: 48 ARKKRRGIIEKRRRDRINNSLSELRRLVPTAFEKQGSAKLEKAEILQMTVDHLK 101
>sp|Q9I9L0|HEY2_DANRE Hairy/enhancer-of-split related with YRPW motif protein 2 OS=Danio
rerio GN=hey2 PE=2 SV=2
Length = 324
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVST-----NNRKMDKSTVLKSTIAFLK 75
+++K R + EK+RRD+ N ++EL +V T + K++K+ +L+ T+ LK
Sbjct: 48 ARKKRRGIIEKRRRDRINNSLSELRRLVPTAFEKQGSAKLEKAEILQMTVDHLK 101
>sp|Q8AXV5|HEYL_DANRE Hairy/enhancer-of-split related with YRPW motif-like protein
OS=Danio rerio GN=heyl PE=2 SV=2
Length = 310
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVST-----NNRKMDKSTVLKSTIAFLK 75
+++K R + EK+RRD+ N ++EL +V + + K++K+ +L+ T+ LK
Sbjct: 43 ARKKRRGIIEKRRRDRINHSLSELRRLVPSAFEKQGSSKLEKAEILQMTVDHLK 96
>sp|P79832|ARNT_ONCMY Aryl hydrocarbon receptor nuclear translocator OS=Oncorhynchus
mykiss GN=arnt PE=1 SV=1
Length = 723
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 24 KDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNG 79
K+ R++ + E++RR++ I EL MV T + RK DK T+L+ ++ +K+ G
Sbjct: 62 KERFARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRG 120
>sp|Q8GZ38|UNE10_ARATH Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2
SV=1
Length = 399
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 12/74 (16%)
Query: 13 NSDDTMDDTDDKDD------SKRKSR-----NLSEKKRRDQFNMLINELCTMVSTNNRKM 61
+S M+D ++K S ++SR N SE+KRRD+ N + L +V N+ K
Sbjct: 188 HSRPQMEDEEEKKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVP-NSSKT 246
Query: 62 DKSTVLKSTIAFLK 75
DK+++L I +LK
Sbjct: 247 DKASMLDEVIEYLK 260
>sp|Q9FUA4|SPT_ARATH Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1
SV=1
Length = 373
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 33 NLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
NLSEK+RR + N + L +++ +N K DK+++L I +LK
Sbjct: 203 NLSEKRRRSRINEKMKALQSLIPNSN-KTDKASMLDEAIEYLK 244
>sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1
Length = 478
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 2 STHQLEQSFNRNSDDTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKM 61
+T + E + T K + NLSE+KRRD+ N + L ++ N K
Sbjct: 259 TTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCN-KS 317
Query: 62 DKSTVLKSTIAFLKN 76
DK+++L I ++K+
Sbjct: 318 DKASMLDEAIEYMKS 332
>sp|P13027|ARRS_MAIZE Anthocyanin regulatory R-S protein OS=Zea mays GN=R-S PE=2 SV=1
Length = 612
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
S K+ +SE+KRR++ N + L +++ + +R ++K+++L TIA+LK
Sbjct: 414 SATKNHVMSERKRREKLNEMFLVLKSLLPSIHR-VNKASILAETIAYLK 461
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,600,839
Number of Sequences: 539616
Number of extensions: 1114878
Number of successful extensions: 9133
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 168
Number of HSP's that attempted gapping in prelim test: 8761
Number of HSP's gapped (non-prelim): 451
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)