Query psy3606
Match_columns 96
No_of_seqs 110 out of 381
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 20:54:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h10_B Circadian locomoter out 99.9 4E-22 1.4E-26 128.2 7.1 62 22-83 2-63 (71)
2 4h10_A ARYL hydrocarbon recept 99.8 6.3E-20 2.1E-24 118.1 3.9 58 23-80 4-64 (73)
3 1am9_A Srebp-1A, protein (ster 99.8 2.5E-19 8.7E-24 116.5 6.5 61 24-84 2-62 (82)
4 4ati_A MITF, microphthalmia-as 99.8 3E-19 1E-23 123.2 6.2 71 15-85 14-87 (118)
5 1a0a_A BHLH, protein (phosphat 99.8 1.7E-19 5.7E-24 112.9 3.5 54 28-81 2-61 (63)
6 1an4_A Protein (upstream stimu 99.7 2.2E-19 7.4E-24 111.6 1.5 57 26-82 3-64 (65)
7 4f3l_B BMAL1B; BHLH, PAS, circ 99.7 3.1E-17 1.1E-21 128.1 5.7 76 18-93 3-81 (387)
8 4f3l_A Mclock, circadian locom 99.7 5.5E-17 1.9E-21 125.0 6.7 64 19-82 3-66 (361)
9 1hlo_A Protein (transcription 99.7 1.5E-16 5.2E-21 102.4 6.5 61 24-84 8-69 (80)
10 1nkp_B MAX protein, MYC proto- 99.7 1.6E-16 5.6E-21 102.6 6.2 56 28-83 2-58 (83)
11 1nkp_A C-MYC, MYC proto-oncoge 99.6 7.2E-16 2.4E-20 101.6 6.6 58 26-83 4-63 (88)
12 3u5v_A Protein MAX, transcript 99.6 4.5E-15 1.5E-19 95.9 5.3 57 26-82 3-62 (76)
13 1nlw_A MAD protein, MAX dimeri 99.5 1.5E-14 5.3E-19 93.9 5.6 55 29-83 2-58 (80)
14 1mdy_A Protein (MYOD BHLH doma 99.4 3.8E-13 1.3E-17 85.3 7.3 56 25-80 9-65 (68)
15 2ql2_B Neurod1, neurogenic dif 99.4 7.1E-13 2.4E-17 82.1 6.6 55 27-81 1-57 (60)
16 4ath_A MITF, microphthalmia-as 99.3 4.9E-12 1.7E-16 83.4 5.8 48 39-86 3-53 (83)
17 2lfh_A DNA-binding protein inh 99.1 3.9E-11 1.3E-15 76.6 2.3 50 31-80 17-68 (68)
18 4aya_A DNA-binding protein inh 98.7 7.5E-08 2.6E-12 64.9 7.2 48 36-83 33-82 (97)
19 3muj_A Transcription factor CO 64.9 14 0.00047 25.9 5.2 38 42-79 95-135 (138)
20 1p3q_Q VPS9P, vacuolar protein 42.6 26 0.00087 20.7 3.1 24 34-57 3-26 (54)
21 2jqq_A Conserved oligomeric go 28.7 62 0.0021 23.9 3.8 49 34-85 48-96 (204)
22 1d8j_A General transcription f 22.7 51 0.0017 21.0 2.1 18 61-78 7-24 (81)
No 1
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.86 E-value=4e-22 Score=128.18 Aligned_cols=62 Identities=60% Similarity=0.811 Sum_probs=56.5
Q ss_pred ChhhhHHhhhhchHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhhhhhhh
Q psy3606 22 DDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLKNYNGLYDC 83 (96)
Q Consensus 22 ~~k~~~~r~~h~~~EKrRRd~IN~~i~eL~~LvP~~~~KldK~~IL~~tI~yLk~L~~~~~~ 83 (96)
+.++.++|.+|+++||+||++||.+|.+|++|||++..|+||++||++||+||+.|++..+-
T Consensus 2 d~k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~ 63 (71)
T 4h10_B 2 DDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAW 63 (71)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhH
Confidence 45678999999999999999999999999999998888999999999999999999987643
No 2
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.78 E-value=6.3e-20 Score=118.09 Aligned_cols=58 Identities=36% Similarity=0.595 Sum_probs=53.1
Q ss_pred hhhhHHhhhhchHHHHHHHHHHHHHHHHHhhcCCC---CCCCCHHHHHHHHHHHHHHhhhh
Q psy3606 23 DKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTN---NRKMDKSTVLKSTIAFLKNYNGL 80 (96)
Q Consensus 23 ~k~~~~r~~h~~~EKrRRd~IN~~i~eL~~LvP~~---~~KldK~~IL~~tI~yLk~L~~~ 80 (96)
.+..++|.+|+++||+||++||..|.+|+.|||.| ..|+||++||++||+||+.|+..
T Consensus 4 ~k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 4 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 35578899999999999999999999999999985 47999999999999999999874
No 3
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.78 E-value=2.5e-19 Score=116.51 Aligned_cols=61 Identities=30% Similarity=0.375 Sum_probs=56.6
Q ss_pred hhhHHhhhhchHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhhhhhhhh
Q psy3606 24 KDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLKNYNGLYDCL 84 (96)
Q Consensus 24 k~~~~r~~h~~~EKrRRd~IN~~i~eL~~LvP~~~~KldK~~IL~~tI~yLk~L~~~~~~~ 84 (96)
+...+|.+|+.+||+||++||..|.+|+.|||++..|++|++||++||+||+.|+.....+
T Consensus 2 k~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L 62 (82)
T 1am9_A 2 SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL 62 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999998899999999999999999999876554
No 4
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.77 E-value=3e-19 Score=123.24 Aligned_cols=71 Identities=23% Similarity=0.378 Sum_probs=49.3
Q ss_pred CCccCCCChhhhHHhhhhchHHHHHHHHHHHHHHHHHhhcCCC---CCCCCHHHHHHHHHHHHHHhhhhhhhhc
Q psy3606 15 DDTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTN---NRKMDKSTVLKSTIAFLKNYNGLYDCLI 85 (96)
Q Consensus 15 ~d~~~~~~~k~~~~r~~h~~~EKrRRd~IN~~i~eL~~LvP~~---~~KldK~~IL~~tI~yLk~L~~~~~~~~ 85 (96)
.|.+.....+...+|.+|+.+||+||++||.+|.+|+.|||++ ..|++|++||++||+||+.|++....+.
T Consensus 14 t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~ 87 (118)
T 4ati_A 14 TESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAK 87 (118)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456778889999999999999999999999999999986 4689999999999999999998776554
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.77 E-value=1.7e-19 Score=112.92 Aligned_cols=54 Identities=19% Similarity=0.405 Sum_probs=50.1
Q ss_pred HhhhhchHHHHHHHHHHHHHHHHHhhcCCC------CCCCCHHHHHHHHHHHHHHhhhhh
Q psy3606 28 KRKSRNLSEKKRRDQFNMLINELCTMVSTN------NRKMDKSTVLKSTIAFLKNYNGLY 81 (96)
Q Consensus 28 ~r~~h~~~EKrRRd~IN~~i~eL~~LvP~~------~~KldK~~IL~~tI~yLk~L~~~~ 81 (96)
+|.+|+++||+||++||.+|.+|++|||++ ..+++|++||++||+||+.|++..
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999999974 479999999999999999999854
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.74 E-value=2.2e-19 Score=111.62 Aligned_cols=57 Identities=19% Similarity=0.385 Sum_probs=51.9
Q ss_pred hHHhhhhchHHHHHHHHHHHHHHHHHhhcCCCC-----CCCCHHHHHHHHHHHHHHhhhhhh
Q psy3606 26 DSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN-----RKMDKSTVLKSTIAFLKNYNGLYD 82 (96)
Q Consensus 26 ~~~r~~h~~~EKrRRd~IN~~i~eL~~LvP~~~-----~KldK~~IL~~tI~yLk~L~~~~~ 82 (96)
..+|.+|+.+||+||++||..|.+|+.|||++. .|++|++||++||+||+.|++.+.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999864 389999999999999999998653
No 7
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.68 E-value=3.1e-17 Score=128.07 Aligned_cols=76 Identities=30% Similarity=0.493 Sum_probs=56.0
Q ss_pred cCCCChhhhHHhhhhchHHHHHHHHHHHHHHHHHhhcCC---CCCCCCHHHHHHHHHHHHHHhhhhhhhhccCCccccc
Q psy3606 18 MDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVST---NNRKMDKSTVLKSTIAFLKNYNGLYDCLIMIGYFTNF 93 (96)
Q Consensus 18 ~~~~~~k~~~~r~~h~~~EKrRRd~IN~~i~eL~~LvP~---~~~KldK~~IL~~tI~yLk~L~~~~~~~~~~~~~~~f 93 (96)
+++...|.+.+|.+|+.+|||||++||..|.+|+.|||. ...|+||++||++||+|||.|++......+.++.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (387)
T 4f3l_B 3 YAEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYTEANYKPTF 81 (387)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC------CCSSCTT
T ss_pred cccccchhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcccccccccccCccc
Confidence 345678889999999999999999999999999999996 3589999999999999999999766555555555544
No 8
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.67 E-value=5.5e-17 Score=125.03 Aligned_cols=64 Identities=58% Similarity=0.768 Sum_probs=45.1
Q ss_pred CCCChhhhHHhhhhchHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhhhhhh
Q psy3606 19 DDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLKNYNGLYD 82 (96)
Q Consensus 19 ~~~~~k~~~~r~~h~~~EKrRRd~IN~~i~eL~~LvP~~~~KldK~~IL~~tI~yLk~L~~~~~ 82 (96)
.+...+++.+|.+|+++||+||++||..|.+|++|||...+|+||++||++||+|||.++...+
T Consensus 3 ~~~~~~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~~ 66 (361)
T 4f3l_A 3 VEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETTA 66 (361)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhcc
Confidence 4556778899999999999999999999999999999777899999999999999999987643
No 9
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.66 E-value=1.5e-16 Score=102.45 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=55.0
Q ss_pred hhhHHhhhhchHHHHHHHHHHHHHHHHHhhcCCC-CCCCCHHHHHHHHHHHHHHhhhhhhhh
Q psy3606 24 KDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTN-NRKMDKSTVLKSTIAFLKNYNGLYDCL 84 (96)
Q Consensus 24 k~~~~r~~h~~~EKrRRd~IN~~i~eL~~LvP~~-~~KldK~~IL~~tI~yLk~L~~~~~~~ 84 (96)
....+|.+|+.+||+||+.||.+|.+|+.+||.+ ..|++|++||+.||+||+.|++....+
T Consensus 8 ~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L 69 (80)
T 1hlo_A 8 SDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH 69 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999985 469999999999999999999876544
No 10
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.65 E-value=1.6e-16 Score=102.62 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=51.5
Q ss_pred HhhhhchHHHHHHHHHHHHHHHHHhhcCCC-CCCCCHHHHHHHHHHHHHHhhhhhhh
Q psy3606 28 KRKSRNLSEKKRRDQFNMLINELCTMVSTN-NRKMDKSTVLKSTIAFLKNYNGLYDC 83 (96)
Q Consensus 28 ~r~~h~~~EKrRRd~IN~~i~eL~~LvP~~-~~KldK~~IL~~tI~yLk~L~~~~~~ 83 (96)
+|.+|+.+||+||+.||.+|.+|+.+||++ ..|++|++||.+||+||+.|++....
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~ 58 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHT 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999984 57999999999999999999976543
No 11
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.62 E-value=7.2e-16 Score=101.61 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=53.1
Q ss_pred hHHhhhhchHHHHHHHHHHHHHHHHHhhcCCC--CCCCCHHHHHHHHHHHHHHhhhhhhh
Q psy3606 26 DSKRKSRNLSEKKRRDQFNMLINELCTMVSTN--NRKMDKSTVLKSTIAFLKNYNGLYDC 83 (96)
Q Consensus 26 ~~~r~~h~~~EKrRRd~IN~~i~eL~~LvP~~--~~KldK~~IL~~tI~yLk~L~~~~~~ 83 (96)
..+|.+||.+||+||+.||.+|..|+.+||.. ..|++|++||..||+||+.|+.....
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~ 63 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK 63 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999984 47999999999999999999987654
No 12
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.55 E-value=4.5e-15 Score=95.88 Aligned_cols=57 Identities=25% Similarity=0.320 Sum_probs=46.0
Q ss_pred hHHhhhhchHHHHHHHHHHHHHHHHHhhcCC--CCCCC-CHHHHHHHHHHHHHHhhhhhh
Q psy3606 26 DSKRKSRNLSEKKRRDQFNMLINELCTMVST--NNRKM-DKSTVLKSTIAFLKNYNGLYD 82 (96)
Q Consensus 26 ~~~r~~h~~~EKrRRd~IN~~i~eL~~LvP~--~~~Kl-dK~~IL~~tI~yLk~L~~~~~ 82 (96)
..+|.+||.+||+||+.||.+|.+|+.+||. ...|. +|++||+.||+||+.|++...
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~ 62 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVR 62 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999995 23455 899999999999999998764
No 13
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.52 E-value=1.5e-14 Score=93.92 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=50.6
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHhhcCCC--CCCCCHHHHHHHHHHHHHHhhhhhhh
Q psy3606 29 RKSRNLSEKKRRDQFNMLINELCTMVSTN--NRKMDKSTVLKSTIAFLKNYNGLYDC 83 (96)
Q Consensus 29 r~~h~~~EKrRRd~IN~~i~eL~~LvP~~--~~KldK~~IL~~tI~yLk~L~~~~~~ 83 (96)
|..||.+||+||+.||.+|..|+.+||.. ..|++|++||.+|++||+.|++....
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~ 58 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRK 58 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999974 47999999999999999999987654
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.43 E-value=3.8e-13 Score=85.31 Aligned_cols=56 Identities=23% Similarity=0.485 Sum_probs=51.5
Q ss_pred hhHHhhhhchHHHHHHHHHHHHHHHHHhhcCCC-CCCCCHHHHHHHHHHHHHHhhhh
Q psy3606 25 DDSKRKSRNLSEKKRRDQFNMLINELCTMVSTN-NRKMDKSTVLKSTIAFLKNYNGL 80 (96)
Q Consensus 25 ~~~~r~~h~~~EKrRRd~IN~~i~eL~~LvP~~-~~KldK~~IL~~tI~yLk~L~~~ 80 (96)
...+|..||..||+|+..||..|..|+.+||.. +.|++|..||+.||+||..|++.
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~ 65 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQAL 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999974 57999999999999999999985
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.40 E-value=7.1e-13 Score=82.08 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=50.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHHHhhcCCC--CCCCCHHHHHHHHHHHHHHhhhhh
Q psy3606 27 SKRKSRNLSEKKRRDQFNMLINELCTMVSTN--NRKMDKSTVLKSTIAFLKNYNGLY 81 (96)
Q Consensus 27 ~~r~~h~~~EKrRRd~IN~~i~eL~~LvP~~--~~KldK~~IL~~tI~yLk~L~~~~ 81 (96)
++|..||..||+|+..||..|..|+.+||.. ..|++|..||+.|++||..|++..
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999973 689999999999999999999854
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=99.28 E-value=4.9e-12 Score=83.37 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhhcCCC---CCCCCHHHHHHHHHHHHHHhhhhhhhhcc
Q psy3606 39 RRDQFNMLINELCTMVSTN---NRKMDKSTVLKSTIAFLKNYNGLYDCLIM 86 (96)
Q Consensus 39 RRd~IN~~i~eL~~LvP~~---~~KldK~~IL~~tI~yLk~L~~~~~~~~~ 86 (96)
-|+.||.+|.||..|||++ ..|++|++||+.||+||+.|++.++++.+
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999974 46999999999999999999987765443
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.07 E-value=3.9e-11 Score=76.56 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=44.9
Q ss_pred hhchHHHHHHHHHHHHHHHHHhhcCCC--CCCCCHHHHHHHHHHHHHHhhhh
Q psy3606 31 SRNLSEKKRRDQFNMLINELCTMVSTN--NRKMDKSTVLKSTIAFLKNYNGL 80 (96)
Q Consensus 31 ~h~~~EKrRRd~IN~~i~eL~~LvP~~--~~KldK~~IL~~tI~yLk~L~~~ 80 (96)
.-+.-||+|+..||..|..|+.+||.. +.|++|..||+.||+||..|+.+
T Consensus 17 ~a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~a 68 (68)
T 2lfh_A 17 PAAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQVV 68 (68)
T ss_dssp CCBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHCC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHcC
Confidence 455779999999999999999999973 68999999999999999999863
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.66 E-value=7.5e-08 Score=64.89 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--CCCCCCHHHHHHHHHHHHHHhhhhhhh
Q psy3606 36 EKKRRDQFNMLINELCTMVST--NNRKMDKSTVLKSTIAFLKNYNGLYDC 83 (96)
Q Consensus 36 EKrRRd~IN~~i~eL~~LvP~--~~~KldK~~IL~~tI~yLk~L~~~~~~ 83 (96)
|+.|-..+|..|..|+.+||. ...|++|..+|+.||+||..|++....
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 566778999999999999997 368999999999999999999986543
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=64.89 E-value=14 Score=25.87 Aligned_cols=38 Identities=13% Similarity=0.303 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcCCC---CCCCCHHHHHHHHHHHHHHhhh
Q psy3606 42 QFNMLINELCTMVSTN---NRKMDKSTVLKSTIAFLKNYNG 79 (96)
Q Consensus 42 ~IN~~i~eL~~LvP~~---~~KldK~~IL~~tI~yLk~L~~ 79 (96)
.|+-.+..|.++||.. ..++-|--||+.|.+....|-.
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~~ 135 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYG 135 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHHC
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHhC
Confidence 4788999999999963 4688999999999999887643
No 20
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=42.65 E-value=26 Score=20.70 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCC
Q psy3606 34 LSEKKRRDQFNMLINELCTMVSTN 57 (96)
Q Consensus 34 ~~EKrRRd~IN~~i~eL~~LvP~~ 57 (96)
++++-+|.-.+..+.+|+.|.|..
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~l 26 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDM 26 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHcccC
Confidence 456777888899999999999974
No 21
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=28.68 E-value=62 Score=23.92 Aligned_cols=49 Identities=16% Similarity=0.407 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhc
Q psy3606 34 LSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLKNYNGLYDCLI 85 (96)
Q Consensus 34 ~~EKrRRd~IN~~i~eL~~LvP~~~~KldK~~IL~~tI~yLk~L~~~~~~~~ 85 (96)
...+- |.-++....+|..|+-.. =..--.+...||+|||.|-.....+.
T Consensus 48 eLQ~v-~~Dl~~F~~QL~qL~~~~--i~~Tre~v~d~l~YLkkLD~l~~~Lq 96 (204)
T 2jqq_A 48 NLEKT-QSDLQKFMTQLDHLIKDD--ISNTQEIIKDVLEYLKKLDEIYGSLR 96 (204)
T ss_dssp ---CH-HHHHHHHHHHHHHHHHHS--CSTTHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHH-HHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 445677777777776642 22446788899999999987654443
No 22
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=22.73 E-value=51 Score=20.95 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHHHHHhh
Q psy3606 61 MDKSTVLKSTIAFLKNYN 78 (96)
Q Consensus 61 ldK~~IL~~tI~yLk~L~ 78 (96)
--|.++|..+|+|+|.-+
T Consensus 7 ~~~f~~lakiV~~mK~rh 24 (81)
T 1d8j_A 7 GYKFGVLAKIVNYMKTRH 24 (81)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred ccceehHHHHHHHHHHhh
Confidence 368899999999999643
Done!