RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3606
         (96 letters)



>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 80

 Score = 44.9 bits (106), Expect = 2e-08
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 24 KDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
              KR + N  EK+ R   N  I EL  +V     K++KS VL+  I +++
Sbjct: 2  SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIR 53


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 83

 Score = 44.1 bits (104), Expect = 4e-08
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 28 KRKSRNLSEKKRRDQFNMLINELCTMV-STNNRKMDKSTVLKSTIAFLK 75
          KR   N  E+KRRD      + L   V S    K  ++ +L     +++
Sbjct: 2  KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQ 50


>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 65

 Score = 43.6 bits (103), Expect = 5e-08
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 25 DDSKRKSRNLSEKKRRDQFNMLINELCTMV-----STNNRKMDKSTVLKSTIAFLK 75
          D+ +R   N  E++RRD+ N  I +L  ++      +      K  +L     +++
Sbjct: 2  DEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQ 57


>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 63

 Score = 40.2 bits (94), Expect = 9e-07
 Identities = 10/54 (18%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 28 KRKSRNLSEKKRRDQFNMLINELCTMV------STNNRKMDKSTVLKSTIAFLK 75
          KR+S   +E+ RR++  + ++EL +++         +    K+T +++   +++
Sbjct: 2  KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIR 55


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 40.3 bits (94), Expect = 2e-06
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 26 DSKRKSRNLSEKKRRDQFNMLINELCTMV--STNNRKMDKSTVLKSTIAFLK 75
          + KR++ N+ E++RR++       L   +    NN K  K  +LK   A++ 
Sbjct: 4  NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYIL 55


>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 68

 Score = 37.9 bits (88), Expect = 7e-06
 Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 24 KDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRK-MDKSTVLKSTIAFLK 75
           +  +RK+  + E++R  + N     L    S+N  + + K  +L++ I +++
Sbjct: 8  TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIE 60


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 79

 Score = 38.0 bits (88), Expect = 1e-05
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 29 RKSRNLSEKKRRDQFNMLINELCTMV--STNNRKMDKSTVLKSTIAFLK 75
          R + N  EK RR    + + +L  +V    ++ +    ++L      +K
Sbjct: 2  RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIK 50


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 61

 Score = 30.5 bits (69), Expect = 0.006
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 40 RDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
          R   N  I EL  +V   + KM KS VL+  I ++K
Sbjct: 1  RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIK 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 297,912
Number of extensions: 10251
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 14
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)