BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3607
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O61735|CLOCK_DROME Circadian locomoter output cycles protein kaput OS=Drosophila
melanogaster GN=Clk PE=2 SV=3
Length = 1027
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/50 (80%), Positives = 47/50 (94%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLKNYN 78
RKSRNLSEKKRRDQFN L+N+L ++ST++RKMDKSTVLKSTIAFLKN+N
Sbjct: 17 RKSRNLSEKKRRDQFNSLVNDLSALISTSSRKMDKSTVLKSTIAFLKNHN 66
>sp|Q8QGQ6|CLOCK_CHICK Circadian locomoter output cycles protein kaput OS=Gallus gallus
GN=CLOCK PE=1 SV=2
Length = 875
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 1 MSTHQLEQSFNRNSDDTMD---DTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTN 57
+STH++ +RN D + DDKD +KR SRN SEKKRRDQFN+LI EL +M+ N
Sbjct: 5 ISTHKMSSIADRNDGSIFDGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN 64
Query: 58 NRKMDKSTVLKSTIAFLKNY 77
RKMDKSTVL+ +I FL+ +
Sbjct: 65 ARKMDKSTVLQKSIDFLRKH 84
>sp|Q6YGZ4|CLOCK_TYTAL Circadian locomoter output cycles protein kaput OS=Tyto alba
GN=CLOCK PE=2 SV=1
Length = 851
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 1 MSTHQLEQSFNRNSDDTMD---DTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTN 57
+STH++ +RN D + DDKD +KR SRN SEKKRRDQFN+LI EL +M+ N
Sbjct: 5 ISTHKMSSIADRNDGSIFDGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN 64
Query: 58 NRKMDKSTVLKSTIAFLKNY 77
RKMDKSTVL+ +I FL+ +
Sbjct: 65 ARKMDKSTVLQKSIDFLRKH 84
>sp|Q99743|NPAS2_HUMAN Neuronal PAS domain-containing protein 2 OS=Homo sapiens GN=NPAS2
PE=2 SV=3
Length = 824
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/59 (62%), Positives = 46/59 (77%)
Query: 20 DTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLKNYN 78
D D+KD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDK+TVL+ I FL+ +N
Sbjct: 2 DEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHN 60
>sp|P97460|NPAS2_MOUSE Neuronal PAS domain-containing protein 2 OS=Mus musculus GN=Npas2
PE=1 SV=1
Length = 816
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/59 (62%), Positives = 46/59 (77%)
Query: 20 DTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLKNYN 78
D D+KD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDK+TVL+ I FL+ +N
Sbjct: 2 DEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHN 60
>sp|Q5ZQU2|NPAS2_CHICK Neuronal PAS domain-containing protein 2 OS=Gallus gallus
GN=NPAS2 PE=2 SV=1
Length = 815
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/59 (62%), Positives = 46/59 (77%)
Query: 20 DTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLKNYN 78
D D+KD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDK+TVL+ I FL+ +N
Sbjct: 2 DEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHN 60
>sp|O08785|CLOCK_MOUSE Circadian locomoter output cycles protein kaput OS=Mus musculus
GN=Clock PE=1 SV=1
Length = 855
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/65 (60%), Positives = 49/65 (75%)
Query: 16 DTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
D + + DDKD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDKSTVL+ +I FL+
Sbjct: 23 DGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLR 82
Query: 76 NYNGT 80
+ T
Sbjct: 83 KHKET 87
>sp|Q9WVS9|CLOCK_RAT Circadian locomoter output cycles protein kaput OS=Rattus
norvegicus GN=Clock PE=2 SV=1
Length = 862
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 16 DTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
D + + DDKD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDKSTVL+ +I FL+
Sbjct: 23 DGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLR 82
Query: 76 NY 77
+
Sbjct: 83 KH 84
>sp|Q91YB2|CLOCK_SPACA Circadian locomoter output cycles protein kaput OS=Spalax carmeli
GN=Clock PE=2 SV=1
Length = 865
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 16 DTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
D + + DDKD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDKSTVL+ +I FL+
Sbjct: 23 DGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLR 82
Query: 76 NY 77
+
Sbjct: 83 KH 84
>sp|Q91YB0|CLOCK_NANGA Circadian locomoter output cycles protein kaput OS=Nannospalax
galili GN=Clock PE=1 SV=1
Length = 865
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 16 DTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
D + + DDKD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDKSTVL+ +I FL+
Sbjct: 23 DGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLR 82
Query: 76 NY 77
+
Sbjct: 83 KH 84
>sp|Q5RAK8|CLOCK_PONAB Circadian locomoter output cycles protein kaput OS=Pongo abelii
GN=CLOCK PE=2 SV=1
Length = 846
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 16 DTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
D + + DDKD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDKSTVL+ +I FL+
Sbjct: 23 DGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLR 82
Query: 76 NY 77
+
Sbjct: 83 KH 84
>sp|O15516|CLOCK_HUMAN Circadian locomoter output cycles protein kaput OS=Homo sapiens
GN=CLOCK PE=1 SV=1
Length = 846
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 16 DTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
D + + DDKD +KR SRN SEKKRRDQFN+LI EL +M+ N RKMDKSTVL+ +I FL+
Sbjct: 23 DGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLR 82
Query: 76 NY 77
+
Sbjct: 83 KH 84
>sp|Q91YA8|CLOCK_SPAJD Circadian locomoter output cycles protein kaput OS=Spalax judaei
GN=Clock PE=2 SV=1
Length = 865
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/62 (58%), Positives = 48/62 (77%)
Query: 16 DTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
D + + DDK+ +KR SRN SEKKRRDQFN+LI EL +M+ N R+MDKSTVL+ +I FL+
Sbjct: 23 DGLVEEDDKNKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNAREMDKSTVLQKSIDFLR 82
Query: 76 NY 77
+
Sbjct: 83 KH 84
>sp|O61734|CYCL_DROME Protein cycle OS=Drosophila melanogaster GN=cyc PE=2 SV=2
Length = 413
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 8 QSFNRNSDDTMDDTDDKDDSKRKS-----RNLSE--KKRRDQFNMLINELCTMVS---TN 57
Q F N ++ D+ D++ S R S +N SE K+RRD+ N INEL +M+
Sbjct: 4 QEFCENMEEIEDENYDEEKSARTSDENRKQNHSEIEKRRRDKMNTYINELSSMIPMCFAM 63
Query: 58 NRKMDKSTVLKSTIAFLKNYNGT 80
RK+DK TVL+ + L+ G+
Sbjct: 64 QRKLDKLTVLRMAVQHLRGIRGS 86
>sp|Q9I8T7|BMAL1_CHICK Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Gallus gallus GN=ARNTL PE=1 SV=1
Length = 633
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNGT 80
R++ + EK+RRD+ N I+EL ++V T N RK+DK TVL+ + +K G
Sbjct: 81 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 135
>sp|Q6YGZ5|BMAL1_TYTAL Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Tyto alba GN=ARNTL PE=2 SV=1
Length = 633
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNGT 80
R++ + EK+RRD+ N I+EL ++V T N RK+DK TVL+ + +K G
Sbjct: 81 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 135
>sp|Q5R4T2|BMAL1_PONAB Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Pongo abelii GN=ARNTL PE=2 SV=1
Length = 625
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNGT 80
R++ + EK+RRD+ N I+EL ++V T N RK+DK TVL+ + +K G
Sbjct: 74 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 128
>sp|Q8QGQ7|BMAL2_CHICK Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Gallus gallus GN=ARNTL2 PE=1 SV=1
Length = 622
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNGT 80
R++ + +EK+RRD+ N LI EL M+ N RK+DK TVL+ + LK+ G+
Sbjct: 94 REAHSQTEKRRRDKMNNLIEELSAMIPQCNPMARKLDKLTVLRMAVQHLKSLKGS 148
>sp|Q8WYA1|BMAL2_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Homo sapiens GN=ARNTL2 PE=1 SV=2
Length = 636
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNG 79
R++ + +EK+RRD+ N LI EL M+ N RK+DK TVL+ + L++ G
Sbjct: 109 REAHSQTEKRRRDKMNNLIEELSAMIPQCNPMARKLDKLTVLRMAVQHLRSLKG 162
>sp|A0MLS5|BMAL1_HORSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Equus caballus GN=ARNTL PE=2 SV=1
Length = 626
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 2 STHQLEQSFNRNSDDT---MDDTDDKDDSK--RKSRNLSEKKRRDQFNMLINELCTMVST 56
S+ ++S + + DD ++ T+ + K R++ + EK+RRD+ N I+EL ++V T
Sbjct: 42 SSTDYQESMDTDKDDPHGRLEYTEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPT 101
Query: 57 NN---RKMDKSTVLKSTIAFLKNYNG 79
N RK+DK TVL+ + +K G
Sbjct: 102 CNAMSRKLDKLTVLRMAVQHMKTLRG 127
>sp|Q9WTL8|BMAL1_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Mus musculus GN=Arntl PE=1 SV=2
Length = 632
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 6 LEQSFNRNSDD-----TMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN-- 58
E+S + + DD + + + R++ + EK+RRD+ N I+EL ++V T N
Sbjct: 53 FEESMDTDKDDPHGRLEYAEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAM 112
Query: 59 -RKMDKSTVLKSTIAFLKNYNG 79
RK+DK TVL+ + +K G
Sbjct: 113 SRKLDKLTVLRMAVQHMKTLRG 134
>sp|Q91YA9|BMAL1_NANGA Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Nannospalax galili GN=Arntl PE=1 SV=1
Length = 626
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 2 STHQLEQSFNRNSDDT---MDDTDDKDDSK--RKSRNLSEKKRRDQFNMLINELCTMVST 56
S+ ++S + + DD ++ T+ + K R++ + EK+RRD+ N I+EL ++V T
Sbjct: 42 SSTDYQESMDTDKDDPHGRLEYTEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPT 101
Query: 57 NN---RKMDKSTVLKSTIAFLKNYNG 79
N RK+DK TVL+ + +K G
Sbjct: 102 CNAMSRKLDKLTVLRMAVQHMKTLRG 127
>sp|O00327|BMAL1_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Homo sapiens GN=ARNTL PE=1 SV=2
Length = 626
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 2 STHQLEQSFNRNSDDT---MDDTDDKDDSK--RKSRNLSEKKRRDQFNMLINELCTMVST 56
S+ ++S + + DD ++ T+ + K R++ + EK+RRD+ N I+EL ++V T
Sbjct: 42 SSTDYQESMDTDKDDPHGRLEYTEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPT 101
Query: 57 NN---RKMDKSTVLKSTIAFLKNYNG 79
N RK+DK TVL+ + +K G
Sbjct: 102 CNAMSRKLDKLTVLRMAVQHMKTLRG 127
>sp|Q9EPW1|BMAL1_RAT Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Rattus norvegicus GN=Arntl PE=2 SV=4
Length = 626
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNG 79
R++ + EK+RRD+ N I+EL ++V T N RK+DK TVL+ + +K G
Sbjct: 74 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 127
>sp|O88529|BMAL1_MESAU Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Mesocricetus auratus GN=ARNTL PE=2 SV=1
Length = 626
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNG 79
R++ + EK+RRD+ N I+EL ++V T N RK+DK TVL+ + +K G
Sbjct: 74 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 127
>sp|Q78E60|ARNT2_RAT Aryl hydrocarbon receptor nuclear translocator 2 OS=Rattus
norvegicus GN=Arnt2 PE=2 SV=1
Length = 712
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 12 RNSDDTMDDTDDKDDSKRKSRNLSE--KKRRDQFNMLINELCTMVSTNN---RKMDKSTV 66
R S DD D + SK N SE ++RR++ I EL MV T + RK DK T+
Sbjct: 46 RRSGMDFDDEDGEGPSKFSRENHSEIERRRRNKMTQYITELSDMVPTCSALARKPDKLTI 105
Query: 67 LKSTIAFLKNYNGT 80
L+ ++ +K+ GT
Sbjct: 106 LRMAVSHMKSMRGT 119
>sp|Q61324|ARNT2_MOUSE Aryl hydrocarbon receptor nuclear translocator 2 OS=Mus musculus
GN=Arnt2 PE=1 SV=2
Length = 712
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 12 RNSDDTMDDTDDKDDSKRKSRNLSE--KKRRDQFNMLINELCTMVSTNN---RKMDKSTV 66
R S DD D + SK N SE ++RR++ I EL MV T + RK DK T+
Sbjct: 46 RRSGMDFDDEDGEGPSKFSRENHSEIERRRRNKMTQYITELSDMVPTCSALARKPDKLTI 105
Query: 67 LKSTIAFLKNYNGT 80
L+ ++ +K+ GT
Sbjct: 106 LRMAVSHMKSMRGT 119
>sp|Q9HBZ2|ARNT2_HUMAN Aryl hydrocarbon receptor nuclear translocator 2 OS=Homo sapiens
GN=ARNT2 PE=1 SV=2
Length = 717
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 12 RNSDDTMDDTDDKDDSKRKSRNLSE--KKRRDQFNMLINELCTMVSTNN---RKMDKSTV 66
R S DD D + SK N SE ++RR++ I EL MV T + RK DK T+
Sbjct: 46 RRSGMDFDDEDGEGPSKFSRENHSEIERRRRNKMTQYITELSDMVPTCSALARKPDKLTI 105
Query: 67 LKSTIAFLKNYNGT 80
L+ ++ +K+ GT
Sbjct: 106 LRMAVSHMKSMRGT 119
>sp|Q9DG12|ARNT2_DANRE Aryl hydrocarbon receptor nuclear translocator 2 OS=Danio rerio
GN=arnt2 PE=1 SV=2
Length = 737
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 10 FNRNSDDTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTV 66
F+R DD + DK+ R++ + E++RR++ I EL MV T + RK DK T+
Sbjct: 63 FSRYDDDQI--PGDKERYARENHSEIERRRRNKMTQYITELSDMVPTCSALARKPDKLTI 120
Query: 67 LKSTIAFLKNYNGT 80
L+ ++ +K+ GT
Sbjct: 121 LRMAVSHMKSMRGT 134
>sp|P53762|ARNT_MOUSE Aryl hydrocarbon receptor nuclear translocator OS=Mus musculus
GN=Arnt PE=1 SV=3
Length = 791
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 7 EQSFNRNSDDTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDK 63
++ F R+ D+ + DK+ R++ + E++RR++ I EL MV T + RK DK
Sbjct: 71 KERFARSDDE--QSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDK 128
Query: 64 STVLKSTIAFLKNYNGT 80
T+L+ ++ +K+ GT
Sbjct: 129 LTILRMAVSHMKSLRGT 145
>sp|P27540|ARNT_HUMAN Aryl hydrocarbon receptor nuclear translocator OS=Homo sapiens
GN=ARNT PE=1 SV=1
Length = 789
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 7 EQSFNRNSDDTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDK 63
++ F R+ D+ + DK+ R++ + E++RR++ I EL MV T + RK DK
Sbjct: 71 KERFARSDDE--QSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDK 128
Query: 64 STVLKSTIAFLKNYNGT 80
T+L+ ++ +K+ GT
Sbjct: 129 LTILRMAVSHMKSLRGT 145
>sp|Q9BE97|ARNT_BOVIN Aryl hydrocarbon receptor nuclear translocator OS=Bos taurus
GN=ARNT PE=2 SV=1
Length = 790
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 7 EQSFNRNSDDTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDK 63
++ F R+ D+ + DK+ R++ + E++RR++ I EL MV T + RK DK
Sbjct: 71 KERFARSDDE--QSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDK 128
Query: 64 STVLKSTIAFLKNYNGT 80
T+L+ ++ +K+ GT
Sbjct: 129 LTILRMAVSHMKSLRGT 145
>sp|P41739|ARNT_RAT Aryl hydrocarbon receptor nuclear translocator OS=Rattus norvegicus
GN=Arnt PE=1 SV=2
Length = 800
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 7 EQSFNRNSDDTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDK 63
++ F R+ D+ + DK+ R++ + E++RR++ I EL MV T + RK DK
Sbjct: 71 KERFARSDDE--QSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDK 128
Query: 64 STVLKSTIAFLKNYNGT 80
T+L+ ++ +K+ GT
Sbjct: 129 LTILRMAVSHMKSLRGT 145
>sp|Q2VPD4|BMAL2_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Mus musculus GN=Arntl2 PE=2 SV=2
Length = 579
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 29 RKSRNLSEKKRRDQFNMLINELCTMVSTN---NRKMDKSTVLKSTIAFLKNYNG 79
R++ + EK+RRD+ N LI +L +M+ + K+DK +VL+ + +L++ G
Sbjct: 50 REAHSQMEKRRRDKMNHLIQKLSSMIPPHIPTAHKLDKLSVLRRAVQYLRSLRG 103
>sp|Q2NL18|HEYL_BOVIN Hairy/enhancer-of-split related with YRPW motif-like protein OS=Bos
taurus GN=HEYL PE=2 SV=3
Length = 328
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVST-----NNRKMDKSTVLKSTIAFLKNYNGT 80
+++K R + EK+RRD+ N ++EL +V T + K++K+ VL+ T+ LK + T
Sbjct: 43 ARKKRRGIIEKRRRDRINSSLSELRRLVPTAFEKQGSSKLEKAEVLQMTVDHLKMLHAT 101
>sp|O02748|ARNT_RABIT Aryl hydrocarbon receptor nuclear translocator OS=Oryctolagus
cuniculus GN=ARNT PE=2 SV=1
Length = 790
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 7 EQSFNRNSDDTMDDTDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDK 63
++ F R+ D+ + DK+ R++ + E++RR++ I EL +V T + RK DK
Sbjct: 71 KERFARSDDE--QSSADKERLARENHSEIERRRRNKMTAYITELSDIVPTCSALARKPDK 128
Query: 64 STVLKSTIAFLKNYNGT 80
T+L+ ++ +K+ GT
Sbjct: 129 LTILRMAVSHMKSLRGT 145
>sp|Q9NQ87|HEYL_HUMAN Hairy/enhancer-of-split related with YRPW motif-like protein
OS=Homo sapiens GN=HEYL PE=2 SV=2
Length = 328
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVST-----NNRKMDKSTVLKSTIAFLKNYNGT 80
+++K R + EK+RRD+ N ++EL +V T + K++K+ VL+ T+ LK + T
Sbjct: 43 ARKKHRGIIEKRRRDRINSSLSELRRLVPTAFEKQGSSKLEKAEVLQMTVDHLKMLHAT 101
>sp|Q6GQ26|SRBP2_XENLA Sterol regulatory element-binding protein 2 OS=Xenopus laevis
GN=srebf2 PE=2 SV=1
Length = 1088
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 24 KDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
K+ +R + N+ EK+ R N I EL +V + KM KS VLK I ++K
Sbjct: 287 KEGERRTTHNIIEKRYRSSINDKIMELKDLVMGTDAKMHKSGVLKKAIDYIK 338
>sp|Q9DBX7|HEYL_MOUSE Hairy/enhancer-of-split related with YRPW motif-like protein OS=Mus
musculus GN=Heyl PE=1 SV=2
Length = 326
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 8/65 (12%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVST-----NNRKMDKSTVLKSTIAFLKNYN--- 78
+++K R + EK+RRD+ N ++EL +V T + K++K+ VL+ T+ LK +
Sbjct: 43 ARKKRRGIIEKRRRDRINSSLSELRRLVPTAFEKQGSSKLEKAEVLQMTVDHLKMLHASG 102
Query: 79 GTYYF 83
GT +F
Sbjct: 103 GTGFF 107
>sp|Q7KM13|HEY_DROME Hairy/enhancer-of-split related with YRPW motif protein
OS=Drosophila melanogaster GN=Hey PE=2 SV=1
Length = 425
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVST-----NNRKMDKSTVLKSTIAFLKN 76
S++K R + EKKRRD+ N + EL +V + + K++K+ +L+ T+ LK+
Sbjct: 100 SRKKRRGVIEKKRRDRINSSLTELKRLVPSAYEKQGSAKLEKAEILQLTVEHLKS 154
>sp|O15945|ARNT_DROME Aryl hydrocarbon receptor nuclear translocator homolog
OS=Drosophila melanogaster GN=tgo PE=1 SV=3
Length = 642
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 18 MDDTDDKDDSKRKSRNLS---EKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTI 71
MD+ + +D + SR E++RR++ I EL MV T + RK DK T+L+ +
Sbjct: 1 MDEANIQDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAV 60
Query: 72 AFLKNYNGT 80
A +K GT
Sbjct: 61 AHMKALRGT 69
>sp|Q9I9L0|HEY2_DANRE Hairy/enhancer-of-split related with YRPW motif protein 2 OS=Danio
rerio GN=hey2 PE=2 SV=2
Length = 324
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVST-----NNRKMDKSTVLKSTIAFLKNYNGT 80
+++K R + EK+RRD+ N ++EL +V T + K++K+ +L+ T+ LK T
Sbjct: 48 ARKKRRGIIEKRRRDRINNSLSELRRLVPTAFEKQGSAKLEKAEILQMTVDHLKMLQAT 106
>sp|O02219|AHA1_CAEEL Aryl hydrocarbon receptor nuclear translocator homolog
OS=Caenorhabditis elegans GN=aha-1 PE=1 SV=1
Length = 453
Score = 36.2 bits (82), Expect = 0.058, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 22 DDKDDSKRKSRNLSEKKRRDQFNMLINELCTMV---STNNRKMDKSTVLKSTIAFLKNYN 78
++K+ R++ + E++RR++ INEL MV ++ RK DK T+L+ ++ +K
Sbjct: 39 ENKERFARENHSEIERRRRNKMTHYINELAEMVPQCASLGRKPDKLTILRMAVSHMKGIR 98
Query: 79 G 79
G
Sbjct: 99 G 99
>sp|Q9QUS4|HEY2_MOUSE Hairy/enhancer-of-split related with YRPW motif protein 2 OS=Mus
musculus GN=Hey2 PE=1 SV=1
Length = 339
Score = 35.8 bits (81), Expect = 0.070, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVST-----NNRKMDKSTVLKSTIAFLKNYNGT 80
+++K R + EK+RRD+ N ++EL +V T + K++K+ +L+ T+ LK T
Sbjct: 48 ARKKRRGIIEKRRRDRINNSLSELRRLVPTAFEKQGSAKLEKAEILQMTVDHLKMLQAT 106
>sp|Q9UBP5|HEY2_HUMAN Hairy/enhancer-of-split related with YRPW motif protein 2 OS=Homo
sapiens GN=HEY2 PE=1 SV=1
Length = 337
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVST-----NNRKMDKSTVLKSTIAFLKNYNGT 80
+++K R + EK+RRD+ N ++EL +V T + K++K+ +L+ T+ LK T
Sbjct: 48 ARKKRRGIIEKRRRDRINNSLSELRRLVPTAFEKQGSAKLEKAEILQMTVDHLKMLQAT 106
>sp|Q8AXV5|HEYL_DANRE Hairy/enhancer-of-split related with YRPW motif-like protein
OS=Danio rerio GN=heyl PE=2 SV=2
Length = 310
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVST-----NNRKMDKSTVLKSTIAFLK 75
+++K R + EK+RRD+ N ++EL +V + + K++K+ +L+ T+ LK
Sbjct: 43 ARKKRRGIIEKRRRDRINHSLSELRRLVPSAFEKQGSSKLEKAEILQMTVDHLK 96
>sp|O54792|HES2_MOUSE Transcription factor HES-2 OS=Mus musculus GN=Hes2 PE=2 SV=2
Length = 157
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 21 TDDKDDSKRKSRNLSEKKRRDQFNMLINELCTMV-------STNNRKMDKSTVLKSTIAF 73
+D + ++ + L EK+RR + N +++L +V ++ + K++K+ +L+ T+ F
Sbjct: 7 VEDAAELRKNLKPLLEKRRRARINESLSQLKGLVLPLLGAETSRSSKLEKADILEMTVRF 66
Query: 74 LKNYNGTYYFGCS---LNFFLSAY 94
L+ T Y + LN +L Y
Sbjct: 67 LQEQPATLYSSAAPGPLNSYLEGY 90
>sp|P79832|ARNT_ONCMY Aryl hydrocarbon receptor nuclear translocator OS=Oncorhynchus
mykiss GN=arnt PE=1 SV=1
Length = 723
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 24 KDDSKRKSRNLSEKKRRDQFNMLINELCTMVSTNN---RKMDKSTVLKSTIAFLKNYNGT 80
K+ R++ + E++RR++ I EL MV T + RK DK T+L+ ++ +K+ G+
Sbjct: 62 KERFARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGS 121
>sp|Q6QB00|HELT_DANRE Hairy and enhancer of split-related protein helt OS=Danio rerio
GN=helt PE=2 SV=1
Length = 270
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 31 SRNLSEKKRRDQFNMLINELCTMVS-----TNNRKMDKSTVLKSTIAFLK 75
S + EK+RRD+ N +NEL V N+ K++K+ +L+ T+ +L+
Sbjct: 63 SHKVIEKRRRDRINRCLNELGKTVPMALAKQNSGKLEKAEILEMTVQYLR 112
>sp|P13027|ARRS_MAIZE Anthocyanin regulatory R-S protein OS=Zea mays GN=R-S PE=2 SV=1
Length = 612
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 27 SKRKSRNLSEKKRRDQFNMLINELCTMVSTNNRKMDKSTVLKSTIAFLK 75
S K+ +SE+KRR++ N + L +++ + +R ++K+++L TIA+LK
Sbjct: 414 SATKNHVMSERKRREKLNEMFLVLKSLLPSIHR-VNKASILAETIAYLK 461
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.127 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,308,202
Number of Sequences: 539616
Number of extensions: 1114339
Number of successful extensions: 9232
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 8865
Number of HSP's gapped (non-prelim): 420
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)