Query psy3610
Match_columns 366
No_of_seqs 111 out of 208
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 21:00:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05208 ALG3: ALG3 protein; 100.0 9E-135 2E-139 996.2 28.9 318 3-340 46-368 (368)
2 KOG2762|consensus 100.0 1E-132 3E-137 974.7 29.8 337 4-362 75-411 (429)
3 PF09594 DUF2029: Protein of u 96.8 0.035 7.6E-07 49.8 13.5 154 12-194 2-162 (241)
4 PF13231 PMT_2: Dolichyl-phosp 96.7 0.1 2.3E-06 43.5 14.9 123 14-155 3-132 (159)
5 COG5650 Predicted integral mem 96.4 0.0082 1.8E-07 63.5 7.3 133 105-239 219-354 (536)
6 TIGR03459 crt_membr carotene b 96.4 0.097 2.1E-06 55.0 15.0 125 10-155 140-269 (470)
7 PF05007 Mannosyl_trans: Manno 95.5 0.46 1E-05 46.5 14.4 209 105-353 8-257 (259)
8 PLN02841 GPI mannosyltransfera 94.4 3.1 6.7E-05 43.7 17.6 198 105-357 137-417 (440)
9 KOG3893|consensus 90.0 0.7 1.5E-05 47.2 6.2 212 105-354 150-401 (405)
10 PF03155 Alg6_Alg8: ALG6, ALG8 89.4 1.6 3.5E-05 46.0 8.6 100 106-206 160-269 (469)
11 COG5542 Predicted integral mem 89.0 1.3 2.8E-05 46.2 7.4 81 95-176 160-242 (420)
12 PRK13375 pimE mannosyltransfer 88.5 30 0.00065 36.2 16.9 161 9-197 77-241 (409)
13 PF02366 PMT: Dolichyl-phospha 86.3 15 0.00032 34.1 12.1 122 13-151 62-196 (245)
14 KOG2575|consensus 81.9 5.6 0.00012 42.0 7.9 91 108-198 197-296 (510)
15 TIGR03766 conserved hypothetic 79.6 55 0.0012 34.2 14.4 123 15-155 120-253 (483)
16 PF14897 EpsG: EpsG family 76.4 63 0.0014 30.3 12.5 111 16-152 50-162 (330)
17 PF04188 Mannosyl_trans2: Mann 74.0 10 0.00022 39.3 7.2 94 96-189 157-258 (443)
18 PF06728 PIG-U: GPI transamida 60.9 32 0.0007 35.0 7.6 88 105-192 146-246 (382)
19 cd08888 SRPBCC_PITPNA-B_like L 43.4 7.7 0.00017 38.3 -0.1 28 311-338 64-95 (258)
20 KOG2576|consensus 43.0 79 0.0017 33.8 7.1 98 109-206 161-270 (500)
21 PF09852 DUF2079: Predicted me 41.6 2.8E+02 0.006 28.6 10.8 118 18-156 46-166 (449)
22 KOG3359|consensus 37.3 85 0.0019 35.3 6.6 75 105-181 174-271 (723)
23 cd07815 SRPBCC_PITP Lipid-bind 35.2 11 0.00025 37.0 -0.3 28 311-338 64-95 (251)
24 COG4346 Predicted membrane-bou 31.3 1.7E+02 0.0036 31.0 7.1 67 113-179 217-284 (438)
25 cd08889 SRPBCC_PITPNM1-2_like 29.9 17 0.00037 36.0 -0.0 28 311-338 66-97 (260)
26 TIGR03718 R_switched_Alx integ 28.9 2E+02 0.0043 29.2 7.1 67 277-349 221-291 (302)
27 cd08890 SRPBCC_PITPNC1_like Li 27.4 19 0.00042 35.4 -0.1 26 312-337 65-93 (250)
28 PF11028 DUF2723: Protein of u 24.7 1.5E+02 0.0032 27.6 5.1 35 123-157 136-171 (178)
29 KOG3668|consensus 23.0 19 0.00041 35.7 -1.1 27 311-337 66-96 (269)
30 PF03929 PepSY_TM: PepSY-assoc 21.4 71 0.0015 21.3 1.7 20 92-116 2-21 (27)
No 1
>PF05208 ALG3: ALG3 protein; InterPro: IPR007873 The formation of N-glycosidic linkages of glycoproteins involves the ordered assembly of the common Glc3Man9GlcNAc2 core-oligosaccharide on the lipid carrier dolichyl pyrophosphate. Whereas early mannosylation steps occur on the cytoplasmic side of the endoplasmic reticulum with GDP-Man as donor, the final reactions from Man5GlcNAc2-PP-Dol to Man9GlcNAc2-PP-Dol on the lumenal side use Dol-P-Man []. The ALG3 gene encodes the Dol-P-Man:Man5GlcNAc2-PP-Dol mannosyltransferase.; GO: 0016758 transferase activity, transferring hexosyl groups, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=100.00 E-value=9.2e-135 Score=996.16 Aligned_cols=318 Identities=51% Similarity=0.922 Sum_probs=290.4
Q ss_pred CCCCCCCCcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchhhhhhhccc
Q psy3610 3 TKLPDTGPLVYPAGFVWLYTGFYHLTDSGTNVRLAQYIYIGLYIAMLSLVLNVYVRTKKVPPWAGELTFNQMVDIQISHA 82 (366)
Q Consensus 3 ~~~GdTGPLVYPAGfVyiY~~ly~lT~~G~nI~~AQ~IF~~lYl~tl~lv~~iY~~~~~vPp~~~~~~~~~~~~~~~~~~ 82 (366)
.+|||||||||||||||+|++|||+||||+||+.||+||+++|++|+++|+.||.+++++|||+
T Consensus 46 ~i~GdTGPlVYPAGfVyiY~~Ly~lT~~G~~I~~aQ~iF~~lyl~t~~~v~~~Y~~~~~~Pp~~---------------- 109 (368)
T PF05208_consen 46 KIKGDTGPLVYPAGFVYIYSFLYYLTDGGENIRLAQYIFAGLYLATLALVFRIYSRSRKLPPWL---------------- 109 (368)
T ss_pred HhcCCCCCccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchH----------------
Confidence 3799999999999999999999999999999999999999999999999999998889999999
Q ss_pred hhhhhhhhhchhhhhhHHHhhcchhHHHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHhhChHHHH
Q psy3610 83 VPLISIFTSYRIHSIFVLRLFNDPLAVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIICLGYLGTL 162 (366)
Q Consensus 83 ~l~~l~~lSkRlHSIfVLRLFND~~a~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~~g~~~~~ 162 (366)
++ ++|+|||+||||||||||||+||+++|+|+++++++||.+||++||+|||||||+|||+||+++++++++|+.+++
T Consensus 110 -~~-ll~lSkRlHSI~vLRlFND~~a~~~~~~ai~~~~~~~w~~g~~~yS~avSIKMN~LL~~Pall~~~l~~~g~~~~~ 187 (368)
T PF05208_consen 110 -LI-LLCLSKRLHSIFVLRLFNDCFAMLFLYAAILLFQRRRWLLGSLLYSLAVSIKMNALLFAPALLVLLLQSLGLLKTL 187 (368)
T ss_pred -HH-HHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHH
Confidence 65 5699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccChhhhhhhccccCceeEEEEeecceecCcccccChhHHHHHHHHHHHHHHHHHHHhh-cc
Q psy3610 163 KQLFICAFLQLFFALPFLIENPVAYLKGSFDLGRVFLHKWTVNYRFLPEYIFTNSYFHIGLLVVHILLLAVFYKSWL-RY 241 (366)
Q Consensus 163 ~~l~i~~~vQv~lg~PFL~~~p~~Yl~~AFdf~R~Fl~kWTVNwrFv~Ee~F~s~~F~~~LL~~H~~~L~~F~~~rw-r~ 241 (366)
.++.+|+++|+++|+|||++||++|++|||||||||+|||||||||||||+|+||+||.+||++|+++|++|+.+|| ++
T Consensus 188 ~~l~v~~~vQvllg~PFL~~~p~~Yl~~AFdf~R~Fl~kWTVNwrFv~Ee~F~s~~F~~~LL~~H~~~L~~F~~~rw~~~ 267 (368)
T PF05208_consen 188 WYLAVCALVQVLLGLPFLLTNPWSYLSRAFDFSRQFLYKWTVNWRFVPEEIFLSKRFHLALLALHLALLLLFAFTRWIRP 267 (368)
T ss_pred HHHHHHHHHHHHHhhHHHHhCHHHHHHHhcccCceEEEEEEEeeEEcCHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 43
Q ss_pred cccccchhhHHHHHhhhhhhc----cccccccchhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHhhhcCCCch
Q psy3610 242 LNSYNNYKSLEKNIKKQVKEN----KASLDMSIASNLLVMPLFVSNFIGIVCARSLHYQFYVWYYHSLPYLLWSTSYSNT 317 (366)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~lf~sNfIGi~fARSLHYQFysWY~~tlP~LLw~t~~p~~ 317 (366)
.+ ...+.+.+.++++.+++ +...++..+++++.++|++||+|||+|||||||||||||+||+|+|||+||+|+.
T Consensus 268 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lftsNfIGIlfARSLHYQFysWY~~tlP~LLw~t~~p~~ 345 (368)
T PF05208_consen 268 SG--RSLRGLIKSLLKPFRPNSQLNSVISSPLTPDYIVTTPLFTSNFIGILFARSLHYQFYSWYFWTLPFLLWCTGLPPP 345 (368)
T ss_pred cc--cchhHHHHHHHhcccccccccccccccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCChH
Confidence 22 12333444444433211 1111233345565667999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCchhhH
Q psy3610 318 VRYLILGVIELCWNTYPSTIYSS 340 (366)
Q Consensus 318 ~~~~~~~~iE~~WNvyPST~~SS 340 (366)
+++++|++|||||||||||+.||
T Consensus 346 ~~~~~~~~~E~~WNvyPST~~SS 368 (368)
T PF05208_consen 346 LKIALWGAIEYCWNVYPSTPLSS 368 (368)
T ss_pred HHHHHHHHHHHHhcCcCCCcCCC
Confidence 99999999999999999999998
No 2
>KOG2762|consensus
Probab=100.00 E-value=1.3e-132 Score=974.73 Aligned_cols=337 Identities=51% Similarity=0.934 Sum_probs=307.9
Q ss_pred CCCCCCCcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchhhhhhhccch
Q psy3610 4 KLPDTGPLVYPAGFVWLYTGFYHLTDSGTNVRLAQYIYIGLYIAMLSLVLNVYVRTKKVPPWAGELTFNQMVDIQISHAV 83 (366)
Q Consensus 4 ~~GdTGPLVYPAGfVyiY~~ly~lT~~G~nI~~AQ~IF~~lYl~tl~lv~~iY~~~~~vPp~~~~~~~~~~~~~~~~~~~ 83 (366)
++||||||||||||||||+++||+||||+||++||+||+++|++|+++|+.||.|+.++|||+
T Consensus 75 l~GdTGPLVYPAGhv~iy~~ly~lTs~g~nv~~aQ~iF~~lYl~tLalv~~iy~kt~~vPp~v----------------- 137 (429)
T KOG2762|consen 75 LVGDTGPLVYPAGHVYIYSLLYYLTSGGTNVRRAQYIFAGLYLLTLALVLRIYHKTVRVPPWV----------------- 137 (429)
T ss_pred hcCCCCCccccchHHHHHHHHHHHHcCCCeeehHHHHHHHHHHHHHHHHHHHHHHhccCChHH-----------------
Confidence 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhchhhhhhHHHhhcchhHHHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHhhChHHHHH
Q psy3610 84 PLISIFTSYRIHSIFVLRLFNDPLAVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIICLGYLGTLK 163 (366)
Q Consensus 84 l~~l~~lSkRlHSIfVLRLFND~~a~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~~g~~~~~~ 163 (366)
++ +.|+|||+||||||||||||+||+++|+++++++.+||.+||++||+|||||||+|||+||+++.+++..|..+|+.
T Consensus 138 lv-L~~lskRiHSIfVLRLFND~fa~lll~~~i~~~l~qkw~~gs~~fSlAvSVKMNvLLyaPall~~lL~~~~~~~tl~ 216 (429)
T KOG2762|consen 138 LV-LLCLSKRIHSIFVLRLFNDPFAMLLLYVAILLFLKQKWLVGSIFFSLAVSVKMNVLLYAPALLLLLLQNLGPIGTLL 216 (429)
T ss_pred HH-HHHHHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHHHHHhHhhhheeehhhhhhhHHHHHHHHHHHHHhccHHHHHH
Confidence 65 56889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccChhhhhhhccccCceeEEEEeecceecCcccccChhHHHHHHHHHHHHHHHHHHHhhcccc
Q psy3610 164 QLFICAFLQLFFALPFLIENPVAYLKGSFDLGRVFLHKWTVNYRFLPEYIFTNSYFHIGLLVVHILLLAVFYKSWLRYLN 243 (366)
Q Consensus 164 ~l~i~~~vQv~lg~PFL~~~p~~Yl~~AFdf~R~Fl~kWTVNwrFv~Ee~F~s~~F~~~LL~~H~~~L~~F~~~rwr~~~ 243 (366)
++.+|+.+|+++|+|||.++|.+|+++||||||+|+|||||||||+|||+|+||+||.+||.+|+++|++|+.+||....
T Consensus 217 ~L~v~~~vQilvg~PFLl~~p~~Yl~~aFDlGR~F~~kWtVNwrflpe~~F~~k~Fh~aLL~~HL~lL~aFa~~~w~~~R 296 (429)
T KOG2762|consen 217 HLAVCILVQILVGLPFLLYFPSSYLTQAFDLGRVFMYKWTVNWRFLPEEVFEDKRFHLALLILHLTLLVAFACYRWNKLR 296 (429)
T ss_pred HHHHHHHHHHHHcCchHhhChHHHHhhhcccccceeEEeeeeeEeCcHHHhccchHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999993111
Q ss_pred cccchhhHHHHHhhhhhhccccccccchhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHhhhcCCCchHHHHHH
Q psy3610 244 SYNNYKSLEKNIKKQVKENKASLDMSIASNLLVMPLFVSNFIGIVCARSLHYQFYVWYYHSLPYLLWSTSYSNTVRYLIL 323 (366)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lf~sNfIGi~fARSLHYQFysWY~~tlP~LLw~t~~p~~~~~~~~ 323 (366)
. ..++..++.....+++.+..+..++++ ++++++||+|||+||||||||||+||+||+|||+|++++|..+|+++|
T Consensus 297 r---~~~~~~sl~~~l~k~~~~~~~~~t~~~-~~~l~tsNlIGI~fsRSLHYQFysWYf~~lPyLl~~~~~p~~~r~~~~ 372 (429)
T KOG2762|consen 297 R---LEDLLSSLNSMLSKRPLPALPAATPQI-VFTLFTSNLIGILFSRSLHYQFYSWYFHTLPYLLWQTPFPFLVRLILL 372 (429)
T ss_pred c---chhHHHhhhhhhhcCCCCCCcCccchh-hHHHHhhchhhhhhhhhhHHHHHHHHHHhchHHHhhCCccHHHHHHHH
Confidence 1 112222222222222233333445566 677999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCCchhhHHHHHHHHHHHHHHHHhcccccc
Q psy3610 324 GVIELCWNTYPSTIYSSAALHLCHLVVLFDLYRNTCAKK 362 (366)
Q Consensus 324 ~~iE~~WNvyPST~~SS~~L~~~~~~~l~~l~~~~~~~~ 362 (366)
++||+||||||||+.||++||+||.++++++|..+.+..
T Consensus 373 ~liE~~WNvYPsT~~SS~lL~~~h~Iill~L~l~~~~~p 411 (429)
T KOG2762|consen 373 GLIELCWNVYPSTSLSSALLHCLHLIILLGLALTPYRKP 411 (429)
T ss_pred HHHHHHhcccCCcchhhHHHHHHHHHHHHHHHhCCCCCc
Confidence 999999999999999999999999999999999766543
No 3
>PF09594 DUF2029: Protein of unknown function (DUF2029); InterPro: IPR018584 This is a putative transmembrane protein from prokaryotes. It is likely to be conserved between Mycobacterium species []. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=96.83 E-value=0.035 Score=49.84 Aligned_cols=154 Identities=25% Similarity=0.282 Sum_probs=94.1
Q ss_pred ccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCC--C--cccccccchhhhhhhccchhhhh
Q psy3610 12 VYPAGFVWLYTGFYHLTDSGTNVRLAQYIYIGLYIAMLSLVLNVYVRTKKVP--P--WAGELTFNQMVDIQISHAVPLIS 87 (366)
Q Consensus 12 VYPAGfVyiY~~ly~lT~~G~nI~~AQ~IF~~lYl~tl~lv~~iY~~~~~vP--p--~~~~~~~~~~~~~~~~~~~l~~l 87 (366)
+||-.+.+++..+.++. ...++.++..+-++.+........|...-+ + +. .+....
T Consensus 2 ~YpP~~~~l~~p~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 61 (241)
T PF09594_consen 2 VYPPLFALLFAPLALLP-----FPVAFLLWALLSLAALALAVRLLLRRLGRRKPPGRAL---------------LLALLL 61 (241)
T ss_pred cCcHHHHHHHHHHHHcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcchhHHH---------------HHHHHH
Confidence 69999999999999886 567888887777777666654444432211 1 11 001112
Q ss_pred hhhhchhhhhhHHHhhcchhHHHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHhhChHHHHHHHHH
Q psy3610 88 IFTSYRIHSIFVLRLFNDPLAVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIICLGYLGTLKQLFI 167 (366)
Q Consensus 88 ~~lSkRlHSIfVLRLFND~~a~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~~g~~~~~~~l~i 167 (366)
++.+-=..++..- =+|.+.++++..++....++|+..++++.++|.++|---.++.|.+++ +...+..... ..
T Consensus 62 ~~~~p~~~~~~~g--q~~~l~~~l~~~a~~~~~r~r~~~agv~lgla~~~K~~p~~~l~~ll~----~r~~r~~~~~-~~ 134 (241)
T PF09594_consen 62 LAFPPVLSALGLG--QFDLLVAALLLLALLALRRGRPWLAGVLLGLAAAIKLYPALLLPALLI----RRRWRAALWA-AA 134 (241)
T ss_pred HHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHh----cchHHHHHHH-HH
Confidence 1222113333333 358899999999999999999889999999999999876666663333 3333333333 22
Q ss_pred HHHHHHHhhcccccc---Chhhhhhhcccc
Q psy3610 168 CAFLQLFFALPFLIE---NPVAYLKGSFDL 194 (366)
Q Consensus 168 ~~~vQv~lg~PFL~~---~p~~Yl~~AFdf 194 (366)
.+. +..+.|++.. ...+|.+.-++-
T Consensus 135 ~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (241)
T PF09594_consen 135 TAA--VLFALPFLLFGPDSWQDFLSVLFQN 162 (241)
T ss_pred HHH--HHHHHHHHHcCchHHHHHHHHHHHH
Confidence 222 2223365543 356666644444
No 4
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=96.75 E-value=0.1 Score=43.55 Aligned_cols=123 Identities=24% Similarity=0.336 Sum_probs=82.5
Q ss_pred chhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchhhhhhhccchhhhhhhhhch
Q psy3610 14 PAGFVWLYTGFYHLTDSGTNVRLAQYIYIGLYIAMLSLVLNVYVRTKKVPPWAGELTFNQMVDIQISHAVPLISIFTSYR 93 (366)
Q Consensus 14 PAGfVyiY~~ly~lT~~G~nI~~AQ~IF~~lYl~tl~lv~~iY~~~~~vPp~~~~~~~~~~~~~~~~~~~l~~l~~lSkR 93 (366)
|-++-++.+..+.++ |++....|..-.....++......+-++..+ +.. +.+..++...-=
T Consensus 3 pPl~~~~~~~~~~l~--G~~~~~~~~~~~l~~~~~~~~~y~i~r~~~~--~~~---------------a~~~~l~~~~~p 63 (159)
T PF13231_consen 3 PPLYFLLLALFFKLF--GDSVWALRLFNILFSLLTLLLIYLIARRLFG--RRA---------------ALIAALLLALSP 63 (159)
T ss_pred ChHHHHHHHHHHHHh--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--chH---------------HHHHHHHHHHhH
Confidence 556778889999999 4466677777777777777766666655322 221 011111122222
Q ss_pred hhhhhHHHhhcchhHHHHHHHHHHHHhh-------cchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHh
Q psy3610 94 IHSIFVLRLFNDPLAVLFFYIALNLFLS-------NQWSLGSAFYSLAVSIKMNILLYAPALLFAYIIC 155 (366)
Q Consensus 94 lHSIfVLRLFND~~a~~~l~~av~l~~~-------~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~ 155 (366)
....+.-..-+|...+++...+++.+.+ +.|.+.+++.++|.-.|.+...+.|++.+.++.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k~~~~~~~~~~~~~l~~~ 132 (159)
T PF13231_consen 64 MFIFYSASARPDMLLLFFFLLALYAFYRYIKSKKWRWWILAGLLLGLAFLTKYTFLLLIPALLLYLLLS 132 (159)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444566699999998888887764 3366899999999999999999999887754433
No 5
>COG5650 Predicted integral membrane protein [Function unknown]
Probab=96.40 E-value=0.0082 Score=63.49 Aligned_cols=133 Identities=23% Similarity=0.259 Sum_probs=114.0
Q ss_pred chhHHHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHhhChHHHHHHHHHHHHHHHHhhccccccCh
Q psy3610 105 DPLAVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIICLGYLGTLKQLFICAFLQLFFALPFLIENP 184 (366)
Q Consensus 105 D~~a~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~~g~~~~~~~l~i~~~vQv~lg~PFL~~~p 184 (366)
|.++++++-+|..+ ++|=.++.+++.+|.|.|---+..+|.++....+.-|.+.+.......+..=+++-.||+.-+|
T Consensus 219 DtI~~ffla~a~v~--r~rP~lAGvl~Gls~a~K~~P~Ivl~pll~~~~keyg~~~a~~f~~~aa~t~lLvN~PfiI~~P 296 (536)
T COG5650 219 DTIWAFFLAAALVC--RGRPKLAGVLIGLSSAFKQIPLIVLPPLLYLIYKEYGLRPAIKFIATAAITWLLVNLPFIILGP 296 (536)
T ss_pred hHHHHHHHHHHHHh--cCCchHHHHHHHHHHHhhcCchhhHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHcCceEEech
Confidence 77888887777766 8888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCceeE---EEEeecceecCcccccChhHHHHHHHHHHHHHHHHHHHhh
Q psy3610 185 VAYLKGSFDLGRVFL---HKWTVNYRFLPEYIFTNSYFHIGLLVVHILLLAVFYKSWL 239 (366)
Q Consensus 185 ~~Yl~~AFdf~R~Fl---~kWTVNwrFv~Ee~F~s~~F~~~LL~~H~~~L~~F~~~rw 239 (366)
+++.+..+-+.|+=. =.|++==+|.|-+-+.-..|....|.+-+.+...++...+
T Consensus 297 ~aw~~sil~~~~r~~~~~~~~~sI~s~aG~~~~~P~~F~~~~l~l~v~lf~lya~~~~ 354 (536)
T COG5650 297 RAWVESILLFARRGLIGVGIGISIPSFAGFYAVDPLLFIIPPLVLNVFLFVLYALYCN 354 (536)
T ss_pred HHHHHHHHhHHhcCCcccccceecccccccccccceEEehhHHHHHHHHHHHHHHHHH
Confidence 999999887776422 2355555677778888888888888877777777776666
No 6
>TIGR03459 crt_membr carotene biosynthesis associated membrane protein. This model represents a family of hydrophobic and presumed membrane proteins. The genes encoding these proteins are syntenically associated with (found proximal to) genes of carotene biosynthesis ususally including phytoene synthase (crtB), phytoene dehydrogenase (crtI) and geranylgeranyl pyrophosphate synthase (ispA).
Probab=96.40 E-value=0.097 Score=55.01 Aligned_cols=125 Identities=18% Similarity=0.166 Sum_probs=92.1
Q ss_pred CcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCcc-cc-cccchhhhhhhccchh
Q psy3610 10 PLVYPAGFVWLYTGFYHLTDSGTNVRLAQYIYIGLYIAMLSLVLNVYVR---TKKVPPWA-GE-LTFNQMVDIQISHAVP 84 (366)
Q Consensus 10 PLVYPAGfVyiY~~ly~lT~~G~nI~~AQ~IF~~lYl~tl~lv~~iY~~---~~~vPp~~-~~-~~~~~~~~~~~~~~~l 84 (366)
|=.||=-|+++.++.-.+| |+|+..+=..+..+-++...+...+-.| ...+||-. -- --.|-
T Consensus 140 ~aPYGPl~l~i~~~v~~l~--g~~i~~~v~~~Rl~~l~g~~l~~w~~~rLar~~g~~~~~AlWL~~~NP----------- 206 (470)
T TIGR03459 140 TTPYGPLHLLVGQAITTVT--GDNVTAGTLAFKLLSLPGLAVMVWAVPKLATHLGGNPTVALWLGVLNP----------- 206 (470)
T ss_pred CCCCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCc-----------
Confidence 5568889999999999998 5689999899999988887766543332 12345532 00 00010
Q ss_pred hhhhhhhchhhhhhHHHhhcchhHHHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHh
Q psy3610 85 LISIFTSYRIHSIFVLRLFNDPLAVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIIC 155 (366)
Q Consensus 85 ~~l~~lSkRlHSIfVLRLFND~~a~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~ 155 (366)
+++.=+--=+| ||.+.+.++-+++++.+++||..|.++-++|++||-..++.+|-+.......
T Consensus 207 Lviihlvgg~H--------nealM~gl~l~gl~~~~r~~~~~g~vli~~a~~VK~~a~l~Lpf~~~~~~~~ 269 (470)
T TIGR03459 207 LVVIHLIGGMH--------NEMLMVGLVSAGILLALKRRPVAGIALIAVAVALKATAGIALPFVVWIWVAH 269 (470)
T ss_pred hhhhhhhcchh--------HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 01111222233 9999999999999999999999999999999999999999999988775554
No 7
>PF05007 Mannosyl_trans: Mannosyltransferase (PIG-M); InterPro: IPR007704 PIG-M has a DXD motif. The DXD motif is found in many glycosyltransferases that utilise nucleotide sugars. It is thought that the motif is involved in the binding of a manganese ion that is required for association of the enzymes with nucleotide sugar substrates [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=95.50 E-value=0.46 Score=46.50 Aligned_cols=209 Identities=20% Similarity=0.338 Sum_probs=120.7
Q ss_pred chhHHHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHhhC--h-------------HHHHHHHHHHH
Q psy3610 105 DPLAVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIICLG--Y-------------LGTLKQLFICA 169 (366)
Q Consensus 105 D~~a~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~~g--~-------------~~~~~~l~i~~ 169 (366)
|++..++...++++++++||..+++++.+||..|.==.-|+|++..-+..+.. . .-++..+...+
T Consensus 8 Esl~~~lVl~~l~~l~~~~~~~Aa~~lGlaVHfKIYPiIY~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~f~~~s~~tf~ 87 (259)
T PF05007_consen 8 ESLLCFLVLLTLYFLLKGRWFLAAILLGLAVHFKIYPIIYALPILLYLSNRKNGSFRSRLKRLLNPNRLKFGLISAITFA 87 (259)
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHhhHHHHhhhccHHHHHHHHHHHhccccchHHHHHHHhcCHhHhhhHHHHHHHHH
Confidence 67777888899999999999999999999999999999999999887644321 1 11111111111
Q ss_pred HHH----HHhhccccccChhhhhhhccccCceeEEEEee----cceecCcccc--cChhHHHHHHHHHHHHHHHHHHHhh
Q psy3610 170 FLQ----LFFALPFLIENPVAYLKGSFDLGRVFLHKWTV----NYRFLPEYIF--TNSYFHIGLLVVHILLLAVFYKSWL 239 (366)
Q Consensus 170 ~vQ----v~lg~PFL~~~p~~Yl~~AFdf~R~Fl~kWTV----NwrFv~Ee~F--~s~~F~~~LL~~H~~~L~~F~~~rw 239 (366)
... ..-|.|||.|. | -+-++|+ .||=-- -...+.++.= .|......-.+=++.+......+ +
T Consensus 88 ~l~~~~Y~~YG~~FL~ea---y---lYHl~R~-DhRHNFS~yfy~lYL~~~~~~~~s~~~~~~aflPQl~l~~~~~~~-~ 159 (259)
T PF05007_consen 88 ALTLLMYYIYGWEFLYEA---Y---LYHLTRK-DHRHNFSPYFYLLYLSSSSPTYSSSILGLLAFLPQLILILVISLK-F 159 (259)
T ss_pred HHHHHHHHHHChHHHHHH---H---hhheEee-cCCccCcHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHH-H
Confidence 111 23466776542 1 1233343 111000 0011122111 22333333333444333322111 1
Q ss_pred cccccccchhhHHHHHhhhhhhccccccccchhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHhhhcCC-Cc--
Q psy3610 240 RYLNSYNNYKSLEKNIKKQVKENKASLDMSIASNLLVMPLFVSNFIGIVCARSLHYQFYVWYYHSLPYLLWSTSY-SN-- 316 (366)
Q Consensus 240 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lf~sNfIGi~fARSLHYQFysWY~~tlP~LLw~t~~-p~-- 316 (366)
++ + ....+|..-+.=|.|=+=-==|++.||..-+|..+-.+++ +.
T Consensus 160 ~~-------------------------------d-L~~~~f~qT~~FVtFNKVcTsQYF~Wyl~lLPl~l~~~~l~s~~~ 207 (259)
T PF05007_consen 160 YR-------------------------------D-LPFCLFLQTFAFVTFNKVCTSQYFLWYLCLLPLVLPRSRLLSWRK 207 (259)
T ss_pred HC-------------------------------c-cchHHHHHHHHHHHhchhhcchHHHHHHHHHHHHhchhccchHHH
Confidence 00 0 0233444444445555555669999999999999999887 43
Q ss_pred -hHHHHHHHHhhhhh------------ccCCCchhhHHHHHHHHHHHHHH
Q psy3610 317 -TVRYLILGVIELCW------------NTYPSTIYSSAALHLCHLVVLFD 353 (366)
Q Consensus 317 -~~~~~~~~~iE~~W------------NvyPST~~SS~~L~~~~~~~l~~ 353 (366)
...+++|.+-|-.| |+|=+--.+|.+..++|..++..
T Consensus 208 ~~~~l~~W~~~Q~~WL~~AY~LEF~G~n~F~~lw~asl~Ff~~N~~iL~~ 257 (259)
T PF05007_consen 208 GVFLLALWVASQALWLLQAYLLEFLGKNTFLPLWLASLVFFIANVWILGQ 257 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 22356677766665 67666777888888888887754
No 8
>PLN02841 GPI mannosyltransferase
Probab=94.36 E-value=3.1 Score=43.71 Aligned_cols=198 Identities=15% Similarity=0.243 Sum_probs=120.0
Q ss_pred chhHHHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHh---------------hC------------
Q psy3610 105 DPLAVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIIC---------------LG------------ 157 (366)
Q Consensus 105 D~~a~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~---------------~g------------ 157 (366)
|++..++.-.+++..+++|+..+++.+.+|+-.|+-=..|+|.++..+-.+ ..
T Consensus 137 e~i~~~lvl~~L~~l~~g~~~~Aa~~lglavhfkiYPiIy~~Pi~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (440)
T PLN02841 137 EPIVCAVILWILICLMNGRLLQAAFWYGLVVHFRIYPIIYALPIILVLDKQYFGPGGRPALTKWNSKQNKTPSSNTEATS 216 (440)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccccccchhhhccccccccccccccc
Confidence 677777778888889999999999999999999999999998887776210 00
Q ss_pred ---------------------hHHHHHHHHHHHHHHHHhhcccccc------------------ChhhhhhhccccCcee
Q psy3610 158 ---------------------YLGTLKQLFICAFLQLFFALPFLIE------------------NPVAYLKGSFDLGRVF 198 (366)
Q Consensus 158 ---------------------~~~~~~~l~i~~~vQv~lg~PFL~~------------------~p~~Yl~~AFdf~R~F 198 (366)
+.....-...-+..-.+-|.|||.| +-.-|++.+-+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~f~l~s~~tf~~l~~~~y~~YG~~FL~eaylYHl~R~DhRHNFS~yfy~lYL~~~~~~~--- 293 (440)
T PLN02841 217 FLFNLWTFLTSLFSRERIMFGLISGGVFFALTGVSFYLYGWEFLNEALLYHLTRTDPRHNFSIYFYHIYLHHEQGFS--- 293 (440)
T ss_pred hhhhhhHHHHhccCHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhheecCCCccCcHHHHHHHHhCCCcch---
Confidence 0001111222234456778898874 1134555321110
Q ss_pred EEEEeecceecCcccccChhHHHHHHHHHHHHHHHHHHHhh-cccccccchhhHHHHHhhhhhhccccccccchhhHHHH
Q psy3610 199 LHKWTVNYRFLPEYIFTNSYFHIGLLVVHILLLAVFYKSWL-RYLNSYNNYKSLEKNIKKQVKENKASLDMSIASNLLVM 277 (366)
Q Consensus 199 l~kWTVNwrFv~Ee~F~s~~F~~~LL~~H~~~L~~F~~~rw-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 277 (366)
..-...-.+=++.+.++... ++ |. . ..
T Consensus 294 ------------------~~~~~~aFlPQl~l~~~~~~-~~~~d--------------------------------l-~~ 321 (440)
T PLN02841 294 ------------------LVERLASFLPQFLVQLALIL-CFSQD--------------------------------L-PF 321 (440)
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHH-HHHcc--------------------------------c-cH
Confidence 00011111222222111111 11 10 0 12
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHhhhcCCCc----hHHHHHHHHhhhhh------------ccCCCchhhHH
Q psy3610 278 PLFVSNFIGIVCARSLHYQFYVWYYHSLPYLLWSTSYSN----TVRYLILGVIELCW------------NTYPSTIYSSA 341 (366)
Q Consensus 278 ~lf~sNfIGi~fARSLHYQFysWY~~tlP~LLw~t~~p~----~~~~~~~~~iE~~W------------NvyPST~~SS~ 341 (366)
.||.=-+.=|.|-+=--=|++.||.--+|+.+-.++++. ...+++|.+-|-.| |+|=.--.+|.
T Consensus 322 ~~f~qT~~FVtfNKVcTsQYF~Wyl~lLPl~l~~~~~~~~~~~~~~l~lW~~~Q~~WL~~aY~LEF~G~n~F~~lw~asl 401 (440)
T PLN02841 322 CLFLQTVAFVAFNKVITAQYFVWFFCLLPLILPWSRMKLKWKGLLCILVWMGSQLHWLMWAYLLEFKGRNVFLQLWIASL 401 (440)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhHhccccHHHHHHHHHH
Confidence 333333333444444445999999999999998877775 44567777777665 66666667899
Q ss_pred HHHHHHHHHHHHHHhc
Q psy3610 342 ALHLCHLVVLFDLYRN 357 (366)
Q Consensus 342 ~L~~~~~~~l~~l~~~ 357 (366)
+..++|..++..+..+
T Consensus 402 ~Ff~~n~~il~~~i~~ 417 (440)
T PLN02841 402 LFLAANTFVLLMIIQH 417 (440)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999998888777754
No 9
>KOG3893|consensus
Probab=89.97 E-value=0.7 Score=47.25 Aligned_cols=212 Identities=17% Similarity=0.240 Sum_probs=122.6
Q ss_pred chhHHHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHhh---------------C-----hHHHHHH
Q psy3610 105 DPLAVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIICL---------------G-----YLGTLKQ 164 (366)
Q Consensus 105 D~~a~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~~---------------g-----~~~~~~~ 164 (366)
||+.-.+.-+.+++.++++|..+++++.+||=.|.==+.|.|++.+.+.... + ..+++..
T Consensus 150 esi~~~lvi~~lyllqK~~v~~A~l~~GlaIh~KIYPliY~l~i~l~ls~~~~~s~~~~~l~sLL~~~k~l~~~~~tLts 229 (405)
T KOG3893|consen 150 ESIVAFLVILTLYLLQKSEVFLAGLAHGLAIHLKIYPLIYSLAIYLSLSTRKTQSTPLDKLCSLLSINKQLCLILGTLTS 229 (405)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhheeeeEechHHhhhhhheEEecCCCCCcHHHHHHHHhccccchhhhHHHHHH
Confidence 7777778788889999999999999999999999999999999887543211 1 2344444
Q ss_pred HHHHH-HHHHHhhccccccChhhhhh---hccccCceeEEEEeecceecCccc-ccChhHHHHHHHHHHHHHHHHHHHhh
Q psy3610 165 LFICA-FLQLFFALPFLIENPVAYLK---GSFDLGRVFLHKWTVNYRFLPEYI-FTNSYFHIGLLVVHILLLAVFYKSWL 239 (366)
Q Consensus 165 l~i~~-~vQv~lg~PFL~~~p~~Yl~---~AFdf~R~Fl~kWTVNwrFv~Ee~-F~s~~F~~~LL~~H~~~L~~F~~~rw 239 (366)
...|. ..=-.-|+|||-|.--=-+. -+=|||-.|+- ..++|+- +-|+.-+..-.+=++.++..+...-|
T Consensus 230 f~~~~~~fY~iYG~eFLd~~ylYH~~R~D~rHNFS~~f~l------lYl~sas~~~s~~l~~~AflPQllLi~~~~~~~~ 303 (405)
T KOG3893|consen 230 FAACTWTFYYIYGWEFLDEAYLYHFVRRDHRHNFSLYFLL------LYLGSASAEGSAILGLLAFLPQLLLILYLSLSFG 303 (405)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhheecccccccCCHHHHH------HHHHccCccHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 44442 22234567776542100000 12244444331 1233433 33444444444455655555555444
Q ss_pred cccccccchhhHHHHHhhhhhhccccccccchhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHhhhcCCCchHH
Q psy3610 240 RYLNSYNNYKSLEKNIKKQVKENKASLDMSIASNLLVMPLFVSNFIGIVCARSLHYQFYVWYYHSLPYLLWSTSYSNTVR 319 (366)
Q Consensus 240 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lf~sNfIGi~fARSLHYQFysWY~~tlP~LLw~t~~p~~~~ 319 (366)
+..-. .++|..-|+=|.+-+=---|++.||---+|..+..+.++.--.
T Consensus 304 ~~~Lp--------------------------------fc~F~~TfafVTyNKVcTSQYFvWYLv~LPl~l~~~~l~wkr~ 351 (405)
T KOG3893|consen 304 QQDLP--------------------------------FCLFAQTFAFVTYNKVCTSQYFVWYLVLLPLVLPNFMLSWKRA 351 (405)
T ss_pred ccCCC--------------------------------ceeeeeeeeEEEechhhhHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 21000 0011111111111111124999999999999999888776332
Q ss_pred ----------HHHHHHhhh-----hhccCCCchhhHHHHHHHHHHHHHHH
Q psy3610 320 ----------YLILGVIEL-----CWNTYPSTIYSSAALHLCHLVVLFDL 354 (366)
Q Consensus 320 ----------~~~~~~iE~-----~WNvyPST~~SS~~L~~~~~~~l~~l 354 (366)
=++|.+..| .||||=.--.+|.+....|.-++-.+
T Consensus 352 l~ll~lW~~~Q~lWL~~aY~lEf~gkNtF~~i~Lag~lFf~~N~~iL~qi 401 (405)
T KOG3893|consen 352 LGLLFLWFITQALWLLPAYLLEFQGKNTFYPIFLAGLLFFATNVYILKQI 401 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 233444433 49999888889988888888777554
No 10
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=89.43 E-value=1.6 Score=45.97 Aligned_cols=100 Identities=20% Similarity=0.343 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHhh--------ChHHHHHHHHHHHHHHHHhhc
Q psy3610 106 PLAVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIICL--------GYLGTLKQLFICAFLQLFFAL 177 (366)
Q Consensus 106 ~~a~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~~--------g~~~~~~~l~i~~~vQv~lg~ 177 (366)
|+..-++-.|+..+.++|-.+|+++|++++.-|==-|-+||+..+-++.+. ++.+.+....+...+-.+.=.
T Consensus 160 ~~~lGl~l~si~~~~~~~~l~~a~~F~~~Ln~Kqm~LY~Ap~~f~yLL~~c~~~~~~~~~~~~~~~lg~~Vi~~f~~~~~ 239 (469)
T PF03155_consen 160 GFLLGLLLLSIAALIRGRYLLGAILFSLLLNFKQMFLYYAPAFFVYLLGSCFQRKSFRFSIKRLIKLGIVVIATFALSFG 239 (469)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 556667788899999999999999999999999999999999999987752 134444444444444555558
Q ss_pred cccc-cChhhhhhhccccCceeEE-EEeecc
Q psy3610 178 PFLI-ENPVAYLKGSFDLGRVFLH-KWTVNY 206 (366)
Q Consensus 178 PFL~-~~p~~Yl~~AFdf~R~Fl~-kWTVNw 206 (366)
||+. +.-.+=++|=|-|+|-..+ ||- |+
T Consensus 240 PF~~~~~l~Qvl~RlFPF~RGL~hdy~A-Nf 269 (469)
T PF03155_consen 240 PFLYSGQLQQVLSRLFPFKRGLFHDYWA-NF 269 (469)
T ss_pred HHHHhhhHHHHHHHhCccccchHHHHHH-HH
Confidence 9985 3446778999999998766 677 75
No 11
>COG5542 Predicted integral membrane protein [Function unknown]
Probab=89.00 E-value=1.3 Score=46.16 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=64.2
Q ss_pred hhhhHHHhh--cchhHHHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHhhChHHHHHHHHHHHHHH
Q psy3610 95 HSIFVLRLF--NDPLAVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIICLGYLGTLKQLFICAFLQ 172 (366)
Q Consensus 95 HSIfVLRLF--ND~~a~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~~g~~~~~~~l~i~~~vQ 172 (366)
-.||.=-+- -|.+=|++..++++++-.+|-..+++++|+|.+.|-|..++.|.+++-+.+... .+.+...+-.+.+|
T Consensus 160 ~~i~~s~iw~~teSlf~ll~~l~iyf~~~k~~~~a~~~faLa~l~Rsngi~~~p~fl~~~ik~~~-ik~i~~~l~~~~l~ 238 (420)
T COG5542 160 SVIYNSAIWGQTESLFTLLSILAIYFFSIKKQIPALFFFALATLFRSNGIFLSPLFLIPLIKNRK-IKIIWYLLPSGSLT 238 (420)
T ss_pred HHHhhhhHHhccchHHHHHHHHHHHHHHccchhHHHHHHHHHHHhccchhHHHHHHHHHHHhhhh-HHHhhhhhhhHHHH
Confidence 445555556 688888899999999999999999999999999999999999999999999886 44444444445555
Q ss_pred HHhh
Q psy3610 173 LFFA 176 (366)
Q Consensus 173 v~lg 176 (366)
+..+
T Consensus 239 ~~~l 242 (420)
T COG5542 239 YLSL 242 (420)
T ss_pred HHHH
Confidence 4444
No 12
>PRK13375 pimE mannosyltransferase; Provisional
Probab=88.50 E-value=30 Score=36.16 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=99.4
Q ss_pred CCcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCcccccccchhhhhhhccchhh
Q psy3610 9 GPLVYPAGFVWLYTGFYHLTDSGTNVRLAQYIYIGLYIAMLSLVLNVYVRTKKV---PPWAGELTFNQMVDIQISHAVPL 85 (366)
Q Consensus 9 GPLVYPAGfVyiY~~ly~lT~~G~nI~~AQ~IF~~lYl~tl~lv~~iY~~~~~v---Pp~~~~~~~~~~~~~~~~~~~l~ 85 (366)
-|=.||=..--++.=+-++. -..++.+|...=++.+..+..+..+.... |+.. . ....
T Consensus 77 LpFtYPPfaallf~PLalLp-----~~~a~~l~~~~~~~al~~~v~~~~r~l~~~~~~~~~-------------a-~~~~ 137 (409)
T PRK13375 77 LPFTYPPFAALVFYPLHLLP-----FGVVAFLWQLATIAALYGVVRISQRLLGGGAGGHRV-------------A-MLWT 137 (409)
T ss_pred CCCCCCcHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhH-------------H-HHHH
Confidence 38999999999999998884 34678888776555555544433331110 1111 0 0000
Q ss_pred hhhhhhchhhhhhHHHhhcchhHHHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHhhChHHHHHHH
Q psy3610 86 ISIFTSYRIHSIFVLRLFNDPLAVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIICLGYLGTLKQL 165 (366)
Q Consensus 86 ~l~~lSkRlHSIfVLRLFND~~a~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~~g~~~~~~~l 165 (366)
.++..+.=+|+=+..= -+..+++-+.+.-+.++||..+.++-.+|.+||-. |+++.+++...+=.+++...
T Consensus 138 ~~~l~~ePv~~tl~~G----QIN~lL~~Lv~~dll~~r~~~aGvliGLAaaIKlT-----Pavf~l~lL~~RrWra~~~A 208 (409)
T PRK13375 138 AVGIWLEPVRSTFDYG----QINVFLMLAVLYAVYSSRWWLSGLLVGLAAGVKLT-----PAITGLYFLGARRWAAAAFS 208 (409)
T ss_pred HHHHHhHHHHHHHHhC----cHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh-----hHHHHHHHHHhCHHHHHHHH
Confidence 1111122222211111 11222222222233467777889999999999976 77777777777877777777
Q ss_pred HHHHHHHHHhhccccccChhhhhhhc-cccCce
Q psy3610 166 FICAFLQLFFALPFLIENPVAYLKGS-FDLGRV 197 (366)
Q Consensus 166 ~i~~~vQv~lg~PFL~~~p~~Yl~~A-Fdf~R~ 197 (366)
......=+.+|....-+++++|.++. +|.+|.
T Consensus 209 ~~t~~~~~~lg~~~~p~~s~~ywt~~l~~~~ri 241 (409)
T PRK13375 209 AVVFLATVGVSYLVVGDQARYYFTDLLGDADRV 241 (409)
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHhcccccc
Confidence 77788888888888888999999886 577875
No 13
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=86.33 E-value=15 Score=34.11 Aligned_cols=122 Identities=20% Similarity=0.178 Sum_probs=66.8
Q ss_pred cchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchhhhhhhccchhhhhhhhhc
Q psy3610 13 YPAGFVWLYTGFYHLTDSGTNVRLAQYIYIGLYIAMLSLVLNVYVRTKKVPPWAGELTFNQMVDIQISHAVPLISIFTSY 92 (366)
Q Consensus 13 YPAGfVyiY~~ly~lT~~G~nI~~AQ~IF~~lYl~tl~lv~~iY~~~~~vPp~~~~~~~~~~~~~~~~~~~l~~l~~lSk 92 (366)
||.-+-|.-..-++.. ++.|...+-..=+..-.++..++..+=++..+ .+.. +.+.-++.++.
T Consensus 62 ~p~~~~~~~~~~~~~~-~~~~~~~~R~~~~l~~~~~~~l~y~~~~~~~~-s~~~---------------al~aa~l~~~~ 124 (245)
T PF02366_consen 62 YPPLYYWISAIGFYYF-GSVNYWAARLPSALFGALTVPLVYLILRRLFG-SRRA---------------ALLAALLLALD 124 (245)
T ss_pred ccchhhHHHhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChhH---------------HHHHHHHHHHh
Confidence 4444444444333333 22455445554444445555555444444322 2322 11122223333
Q ss_pred hhhhhhHHHhhcchhHHHHHHHHHHHHhhc--------c---h-hhhhhHHhhhhhhhhhhhhhh-hHHHHH
Q psy3610 93 RIHSIFVLRLFNDPLAVLFFYIALNLFLSN--------Q---W-SLGSAFYSLAVSIKMNILLYA-PALLFA 151 (366)
Q Consensus 93 RlHSIfVLRLFND~~a~~~l~~av~l~~~~--------~---w-~lgs~~ySlAVSIKMN~LL~~-Pall~~ 151 (366)
-.+-..-...-+|...++++-+|++.+.+. + | .++.+.-++|+++|-+..+.. |+..+.
T Consensus 125 ~~~~~~sr~~~~D~~l~~f~~la~~~~~~~~~~~~~~~~~~~~~~l~gi~lGla~~~K~~~~~~~~~~~~~~ 196 (245)
T PF02366_consen 125 PSLIVQSRYALLDSILLFFILLAIYCLLRWYRYQPFRRKWWLWLLLAGIALGLAILTKGPGLLLVLPAGLLF 196 (245)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 444444445669999999998888877643 1 2 267888999999999987654 554444
No 14
>KOG2575|consensus
Probab=81.86 E-value=5.6 Score=42.03 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHhh-------ChHHHHHHHHHHHHHHHHhhcccc
Q psy3610 108 AVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIICL-------GYLGTLKQLFICAFLQLFFALPFL 180 (366)
Q Consensus 108 a~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~~-------g~~~~~~~l~i~~~vQv~lg~PFL 180 (366)
..-+.-.|+...++++..+||++|++|++-|==.|-+||++..-++... ++.+.++-.....+.=+++=+||+
T Consensus 197 sLGl~~~ai~~ll~~~~~~as~~F~LAlnyKQMeLY~A~pfF~fLLg~c~k~k~~~~f~ri~~ia~~Vv~TF~iiw~P~~ 276 (510)
T KOG2575|consen 197 SLGLTLYAIAALLKNFYVLASVLFVLALNYKQMELYHALPFFAFLLGSCLKPKLFNSFARIIKIALAVVGTFVIIWLPFL 276 (510)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456677777888999999999999999888899998887766522 244444444444555567778988
Q ss_pred cc--ChhhhhhhccccCcee
Q psy3610 181 IE--NPVAYLKGSFDLGRVF 198 (366)
Q Consensus 181 ~~--~p~~Yl~~AFdf~R~F 198 (366)
.+ +-..=+.|-|-|.|--
T Consensus 277 ~~~~~~~qvl~RlFPf~RGl 296 (510)
T KOG2575|consen 277 LSGDTALQVLHRLFPFARGL 296 (510)
T ss_pred hccchHHHHHHHhCchhcch
Confidence 64 5677889999999964
No 15
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=79.63 E-value=55 Score=34.24 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchhhhhhhccchhhhhhhhhchh
Q psy3610 15 AGFVWLYTGFYHLTDSGTNVRLAQYIYIGLYIAMLSLVLNVYVRTKKVPPWAGELTFNQMVDIQISHAVPLISIFTSYRI 94 (366)
Q Consensus 15 AGfVyiY~~ly~lT~~G~nI~~AQ~IF~~lYl~tl~lv~~iY~~~~~vPp~~~~~~~~~~~~~~~~~~~l~~l~~lSkRl 94 (366)
=|++.+.+.++.+.+++ +...+|.+=..+=..+..++..+-++.- .... . .-+.++..++. -
T Consensus 120 ~g~~l~~~~l~kifg~~-~~~~~~llNil~~~~si~liy~i~k~lf--~~~~-----------a-~~a~~l~~l~~---~ 181 (483)
T TIGR03766 120 LFLLLFMHFLYKLFGET-SWLFFDVVNIVLVDLSALILYKAVKKVF--NKKK-----------A-FVALYLFVLLL---A 181 (483)
T ss_pred HHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHh--Cchh-----------H-HHHHHHHHHHH---H
Confidence 47888888899998433 5566665544443344444444433321 1111 0 00011111122 2
Q ss_pred hhhhHHHhhcchhHHHHHHHHHHHHh--hc----c-----hhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHh
Q psy3610 95 HSIFVLRLFNDPLAVLFFYIALNLFL--SN----Q-----WSLGSAFYSLAVSIKMNILLYAPALLFAYIIC 155 (366)
Q Consensus 95 HSIfVLRLFND~~a~~~l~~av~l~~--~~----~-----w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~ 155 (366)
...|..=.-.|.++++++-++++++. .+ + +.+..++-++|.-+|-|...++||+.+..+..
T Consensus 182 ~~~y~~~~Ysd~~~l~~~~l~l~~~~~~~~~~~~~~~~~~~Il~gillal~~~iKp~~iI~liA~~i~~~l~ 253 (483)
T TIGR03766 182 LSPYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAIIFVIAIFIVLFLQ 253 (483)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 55666668899999988877766443 11 1 13778888999999999999999999886553
No 16
>PF14897 EpsG: EpsG family
Probab=76.37 E-value=63 Score=30.25 Aligned_cols=111 Identities=20% Similarity=0.276 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCC-Ccccccccchhhhhhhccchhhhhh-hhhch
Q psy3610 16 GFVWLYTGFYHLTDSGTNVRLAQYIYIGLYIAMLSLVLNVYVRTKKVP-PWAGELTFNQMVDIQISHAVPLISI-FTSYR 93 (366)
Q Consensus 16 GfVyiY~~ly~lT~~G~nI~~AQ~IF~~lYl~tl~lv~~iY~~~~~vP-p~~~~~~~~~~~~~~~~~~~l~~l~-~lSkR 93 (366)
|+..+-..++.++ .| -|.+......++........+|..+-+ ++. .+++. +...=
T Consensus 50 ~~~~l~~~~~~~~---~~---~~~~~~i~~~i~~~~~~~~i~~~~~~~~~~~-----------------~~~l~~~~~~~ 106 (330)
T PF14897_consen 50 GFYLLNYLFSYFG---FN---YQFFFFIISFISLFLFFFFIKKYSKNYPIFL-----------------SLFLFFSFFFF 106 (330)
T ss_pred HHHHHHHHHHHHC---CC---HHHHHHHHHHHHHHHHHHhHHHcccchHHHH-----------------HHHHHHHHHHH
Confidence 6666666666653 34 677777777777776666655543321 332 12221 22223
Q ss_pred hhhhhHHHhhcchhHHHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHH
Q psy3610 94 IHSIFVLRLFNDPLAVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAY 152 (366)
Q Consensus 94 lHSIfVLRLFND~~a~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l 152 (366)
..+.-.+| -+.|+.++..|+....+|||..+..+.-+|..+--.++++.|...+.-
T Consensus 107 ~~~~~~iR---q~~A~~~~~~a~~~~~~~k~~~~~~~~lla~~fH~Saii~l~~~~l~~ 162 (330)
T PF14897_consen 107 FYSFNQIR---QSLAISFFLLALSYLYKKKWIKFILLVLLAILFHYSAIIFLPLYFLSR 162 (330)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666 367888888888888899998888888899999999999999965554
No 17
>PF04188 Mannosyl_trans2: Mannosyltransferase (PIG-V)); InterPro: IPR007315 This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI [], [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=73.98 E-value=10 Score=39.29 Aligned_cols=94 Identities=23% Similarity=0.375 Sum_probs=68.1
Q ss_pred hhhHHHhhcchhHHHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHhh-------C-hHHHHHHHHH
Q psy3610 96 SIFVLRLFNDPLAVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIICL-------G-YLGTLKQLFI 167 (366)
Q Consensus 96 SIfVLRLFND~~a~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~~-------g-~~~~~~~l~i 167 (366)
|||.--.-.++.-.++.+.++++..+++|..+++++++|....-|-++.+..+...++... + ..+.+..+..
T Consensus 157 siF~sa~YsEslf~~lsf~gl~~~~~~~~~~a~~~~~la~~~RsnGll~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 236 (443)
T PF04188_consen 157 SIFLSAPYSESLFALLSFAGLYLLERGRWWLAGLLFALATLTRSNGLLLAGFFAYELLGIYYLDLRQLRRQRRLVRALIS 236 (443)
T ss_pred HHHhhcCccHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 6777777788888888899999999999999999999999999999998887776655432 1 2223333332
Q ss_pred HHHHHHHhhccccccChhhhhh
Q psy3610 168 CAFLQLFFALPFLIENPVAYLK 189 (366)
Q Consensus 168 ~~~vQv~lg~PFL~~~p~~Yl~ 189 (366)
..+-=.+++.||+..+-.+|-+
T Consensus 237 ~~l~~~~i~~pf~~~q~~~y~~ 258 (443)
T PF04188_consen 237 AILSGLLIFLPFVLFQYYAYYR 258 (443)
T ss_pred hhhhhHHHHHHHHHHHHHHHhh
Confidence 2222346788999876666643
No 18
>PF06728 PIG-U: GPI transamidase subunit PIG-U; InterPro: IPR009600 Many eukaryotic proteins are anchored to the cell surface via glycosylphosphatidylinositol (GPI), which is posttranslationally attached to the C terminus by GPI transamidase. The mammalian GPI transamidase is a complex of at least four subunits, GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent a fifth subunit in this complex and may be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI [].; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=60.91 E-value=32 Score=34.96 Aligned_cols=88 Identities=20% Similarity=0.327 Sum_probs=63.3
Q ss_pred chhHHHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHH---------hhC---hHHHHHHH-HHHHHH
Q psy3610 105 DPLAVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYII---------CLG---YLGTLKQL-FICAFL 171 (366)
Q Consensus 105 D~~a~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~---------~~g---~~~~~~~l-~i~~~v 171 (366)
|.+..++.-.+++...+++...+++..++|.-..++-.+.+|.++..+.. ..+ ....+..+ ..++.+
T Consensus 146 ~~f~nl~i~~sl~~a~~g~~~~s~i~lAlatylSlYpi~Ll~Plll~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 225 (382)
T PF06728_consen 146 TVFTNLFILLSLYFAVKGNVFLSAISLALATYLSLYPILLLPPLLLLLYSSWKQSKSKNSSKSSKWSSFLQILLIFIASL 225 (382)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhccccccccccHHHHHHHHHHHHHHHH
Confidence 56677788888888889999999999999999999998888888877766 111 22333322 333444
Q ss_pred HHHhhccccccChhhhhhhcc
Q psy3610 172 QLFFALPFLIENPVAYLKGSF 192 (366)
Q Consensus 172 Qv~lg~PFL~~~p~~Yl~~AF 192 (366)
..++.+.++..+.++++.+.+
T Consensus 226 ~~L~~~S~~~~~sw~fl~~ty 246 (382)
T PF06728_consen 226 AALLLLSYLITGSWNFLDSTY 246 (382)
T ss_pred HHHHHHHHHHcCChHHHHHHH
Confidence 556667777777777776654
No 19
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=43.41 E-value=7.7 Score=38.32 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=21.4
Q ss_pred hcCCCchHHHHH----HHHhhhhhccCCCchh
Q psy3610 311 STSYSNTVRYLI----LGVIELCWNTYPSTIY 338 (366)
Q Consensus 311 ~t~~p~~~~~~~----~~~iE~~WNvyPST~~ 338 (366)
.+++|.+++.++ +.++|-|||.||-+-+
T Consensus 64 ~sklP~wir~~~P~~al~v~EkaWNaYPy~~T 95 (258)
T cd08888 64 QSKVPGFVRMLAPEGSLEIHEKAWNAYPYCRT 95 (258)
T ss_pred cccchhHHHHhCCCcceEEehhhhcCCCceEE
Confidence 456777777655 6789999999997654
No 20
>KOG2576|consensus
Probab=43.00 E-value=79 Score=33.76 Aligned_cols=98 Identities=17% Similarity=0.294 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHH----hhC------hHHHHHHHHHHHHHHHHhhcc
Q psy3610 109 VLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYII----CLG------YLGTLKQLFICAFLQLFFALP 178 (366)
Q Consensus 109 ~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~----~~g------~~~~~~~l~i~~~vQv~lg~P 178 (366)
.-.+-.|+.....+|..+++..||..+--|==-|-+|||..+-++. ..| ..++++...+...+=.+-=.|
T Consensus 161 fgilLlSI~~l~~kr~l~~A~~fsvll~FKHIflY~ApaY~vylLr~Yc~~~nn~~~~~~~~vikL~~vv~~~F~~s~gP 240 (500)
T KOG2576|consen 161 FGILLLSIVFLKTKRYLLSAFLFSVLLNFKHIFLYVAPAYFVYLLRNYCLTSNNVFLANFLNVIKLGIVVLIPFAASFGP 240 (500)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhheeeechhHHHHHHHHHHhcccchhhhhhhhHHHHHHHHHHHHHHHhcc
Confidence 3344567777788999999999999999999999999998877554 222 233333332222222222256
Q ss_pred ccccC-hhhhhhhccccCceeEEE-Eeecc
Q psy3610 179 FLIEN-PVAYLKGSFDLGRVFLHK-WTVNY 206 (366)
Q Consensus 179 FL~~~-p~~Yl~~AFdf~R~Fl~k-WTVNw 206 (366)
|+-.+ --.=++|-|-|||--.|. |-=|+
T Consensus 241 f~~~~qlpqvlSRLFPfsRGLtHAYWAPNF 270 (500)
T KOG2576|consen 241 FIYVQQLPQVLSRLFPFSRGLTHAYWAPNF 270 (500)
T ss_pred HHHHHHhHHHHHHhCCcccccchhhccchH
Confidence 54322 135678999999999985 77774
No 21
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=41.56 E-value=2.8e+02 Score=28.63 Aligned_cols=118 Identities=16% Similarity=0.190 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchhhhhhhccchhhhhhhhhchhhhh
Q psy3610 18 VWLYTGFYHLTDSGTNVRLAQYIYIGLYIAMLSLVLNVYVRTKKVPPWAGELTFNQMVDIQISHAVPLISIFTSYRIHSI 97 (366)
Q Consensus 18 VyiY~~ly~lT~~G~nI~~AQ~IF~~lYl~tl~lv~~iY~~~~~vPp~~~~~~~~~~~~~~~~~~~l~~l~~lSkRlHSI 97 (366)
+++..-+|++-.+..-+...|-+...+ ....+..+-+|. ..+++. +. .+.+.-.+|-=++++
T Consensus 46 l~ll~Ply~l~Ps~~tLli~Qal~la~---~~~pl~~lar~~-~~~~~~-------------a~-~~~~~ylL~p~~~~~ 107 (449)
T PF09852_consen 46 LYLLAPLYRLFPSPLTLLIVQALLLAL---GAIPLYRLARRR-LLSRRL-------------AL-LIALAYLLSPGLQGA 107 (449)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH---HHHHHHHHHHHH-cCCcHH-------------HH-HHHHHHHHhHHHHhh
Confidence 456667888887777777888765433 222333333332 324543 00 012223355555554
Q ss_pred hHHHhhc---chhHHHHHHHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHhh
Q psy3610 98 FVLRLFN---DPLAVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIICL 156 (366)
Q Consensus 98 fVLRLFN---D~~a~~~l~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~~ 156 (366)
- +|+ ||+++-++..+.+.+.++||....++--+.+.+|=..-++.-++.+.++.+.
T Consensus 108 ~---~~dFH~~~~avPll~~~~~~~~~~r~~~~~~~~ll~llvKEd~~l~v~~~gl~~~~~~ 166 (449)
T PF09852_consen 108 N---LFDFHPVAFAVPLLLWALYALERRRWRLFILWALLLLLVKEDLGLTVAGIGLYLLLRR 166 (449)
T ss_pred h---hCCCcHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC
Confidence 1 243 6889878888888889999999999999999999888888877777766655
No 22
>KOG3359|consensus
Probab=37.31 E-value=85 Score=35.33 Aligned_cols=75 Identities=25% Similarity=0.396 Sum_probs=50.1
Q ss_pred chhHHHHHHHHHHHHhh----------cchh----hhhhHHhhhhhhhhhhhhhhhHHHHH-------HHHhhC--hHHH
Q psy3610 105 DPLAVLFFYIALNLFLS----------NQWS----LGSAFYSLAVSIKMNILLYAPALLFA-------YIICLG--YLGT 161 (366)
Q Consensus 105 D~~a~~~l~~av~l~~~----------~~w~----lgs~~ySlAVSIKMN~LL~~Pall~~-------l~~~~g--~~~~ 161 (366)
|...++++.++++.+.+ .+|. +.++.-|+|+|+|+=-++-.-.+++. ++...| ..+.
T Consensus 174 Ds~Llff~~~~~y~~~r~~~~~~~pfs~~W~~wL~~tGvsLgcaiSvK~vGlft~~~Vgl~~v~~LW~Ll~D~~~s~~~~ 253 (723)
T KOG3359|consen 174 DSMLLFFMAAAVYCFVRFYTQRKRPFSLRWWKWLLLTGVSLGCAISVKYVGLFTIALVGLYTVRELWCLLGDLGLSIKQI 253 (723)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhhheeehhhhhHHHHHHHHHHHHHHHHHHHhhcCCcHHHH
Confidence 88888999999998874 2232 67788999999999777655554444 222222 5556
Q ss_pred HHHHHHHHHHHHHhhccccc
Q psy3610 162 LKQLFICAFLQLFFALPFLI 181 (366)
Q Consensus 162 ~~~l~i~~~vQv~lg~PFL~ 181 (366)
+++++.+++ .++++||+.
T Consensus 254 ~kh~~ar~~--~LI~iP~~i 271 (723)
T KOG3359|consen 254 VKHLLARLF--FLIGIPFLI 271 (723)
T ss_pred HHHHHHHHH--HHHHHHHHH
Confidence 666555443 467788765
No 23
>cd07815 SRPBCC_PITP Lipid-binding SRPBCC domain of Class I and Class II Phosphatidylinositol Transfer Proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of the phosphatidylinositol transfer protein (PITP) family of lipid transfer proteins. This family of proteins includes Class 1 PITPs (PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator and related proteins), Class IIA PITPs (PITPNM1/PITPalphaI/Nir2, PITPNM2/PITPalphaII/Nir3, Drosophila RdgB, and related proteins), and Class IIB PITPs (PITPNC1/RdgBbeta and related proteins). The PITP family belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns
Probab=35.17 E-value=11 Score=36.97 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=20.8
Q ss_pred hcCCCchHHHHH----HHHhhhhhccCCCchh
Q psy3610 311 STSYSNTVRYLI----LGVIELCWNTYPSTIY 338 (366)
Q Consensus 311 ~t~~p~~~~~~~----~~~iE~~WNvyPST~~ 338 (366)
.+++|.+++-++ +.++|-|||.||-+-+
T Consensus 64 ~sklP~w~~~~~P~~al~v~EkaWNaYPy~~T 95 (251)
T cd07815 64 GSKLPSWLRALAPKSALTIEEKSWNAYPYCKT 95 (251)
T ss_pred cccchhHHHHhCCccceEEEhhhhCCCCceeE
Confidence 356777776554 6889999999997653
No 24
>COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.35 E-value=1.7e+02 Score=30.97 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=49.4
Q ss_pred HHHHHHHhhcchhhhhhHHhhhhhhhhhhhhhhhHHHHHHHHhhChHHHHHHHHHHHH-HHHHhhccc
Q psy3610 113 YIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIICLGYLGTLKQLFICAF-LQLFFALPF 179 (366)
Q Consensus 113 ~~av~l~~~~~w~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~~g~~~~~~~l~i~~~-vQv~lg~PF 179 (366)
.+++++..++|-..+.+.-.+|-|+||+--.-+|-+-+.....++..+-+....+++. +=++.-.|-
T Consensus 217 aL~~~fl~~~R~l~sgiAlGLAAs~K~SG~~vfpil~~~~l~~~~~k~~~iagilip~~vfll~~~Pi 284 (438)
T COG4346 217 ALFMYFLANDRPLWSGIALGLAASVKLSGAFVFPILWYAILKENDLKERFIAGILIPALVFLLPEIPI 284 (438)
T ss_pred HHHHHHHhcCCeehHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHhhhhHhhHHHHhcccHH
Confidence 3344455678888999999999999999988999999998888887776666544443 334444443
No 25
>cd08889 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs). This subgroup includes an N-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class II phosphatidylinositol transfer protein (PITPs), PITPNM1/PITPalphaI/Nir2 (PYK2 N-terminal domain-interacting receptor2) and PITPNM2/PITPalphaII/Nir3), Drosophila RdgB, and related proteins. These are membrane associated multidomain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Ablation of the mouse gene en
Probab=29.94 E-value=17 Score=35.97 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=20.1
Q ss_pred hcCCCchHHHHH----HHHhhhhhccCCCchh
Q psy3610 311 STSYSNTVRYLI----LGVIELCWNTYPSTIY 338 (366)
Q Consensus 311 ~t~~p~~~~~~~----~~~iE~~WNvyPST~~ 338 (366)
.+++|.+++-++ +.++|-|||.||-|-+
T Consensus 66 ~sklP~wl~~~~P~~al~v~EkaWNaYPy~~T 97 (260)
T cd08889 66 GSHIPGWFRAILPKSALRVEEEAWNAYPYTRT 97 (260)
T ss_pred cccChHHHHHhCCCcceEEehhHhCCCCceEE
Confidence 355676666544 5689999999997643
No 26
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=28.86 E-value=2e+02 Score=29.16 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHhhhcCCCchHHHHHHHHhhhhhcc--C--CCchhhHHHHHHHHHH
Q psy3610 277 MPLFVSNFIGIVCARSLHYQFYVWYYHSLPYLLWSTSYSNTVRYLILGVIELCWNT--Y--PSTIYSSAALHLCHLV 349 (366)
Q Consensus 277 ~~lf~sNfIGi~fARSLHYQFysWY~~tlP~LLw~t~~p~~~~~~~~~~iE~~WNv--y--PST~~SS~~L~~~~~~ 349 (366)
.++++||.+|++.=||+ |...+=.-.-.|+|=+.. ..++.+...+...+. + .|+..|-++..+....
T Consensus 221 ~iV~tsnifaIlgLR~l-yf~l~~ll~rf~~L~~~~-----a~iL~fIGvkmll~~~~~~~ip~~~sl~vi~~~l~~ 291 (302)
T TIGR03718 221 FIVFTSNIFAILGLRSL-YFLLAGLLERFHYLKYGL-----AVILVFIGVKMLLHATDVYHIPIGVSLGVIVGILAV 291 (302)
T ss_pred eEEehHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHhhcCcCCCChhHHHHHHHHHHHH
Confidence 46889999999999999 544555566677776642 234445555555442 2 5666776665555443
No 27
>cd08890 SRPBCC_PITPNC1_like Lipid-binding SRPBCC domain of mammalian PITPNC1,and related proteins (Class IIB PITPs). This subgroup includes the N-terminal SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain of mammalian Class IIB phosphatidylinositol transfer protein (PITP), PITPNC1/RdgBbeta, and related proteins. These are metazoan proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Mammalian PITPNC1 contains an amino-terminal SRPBCC PITP-like domain and a short carboxyl-terminal domain. It is a cytoplasmic protein, and is ubiquitously
Probab=27.40 E-value=19 Score=35.42 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=16.8
Q ss_pred cCCCchHHHHH---HHHhhhhhccCCCch
Q psy3610 312 TSYSNTVRYLI---LGVIELCWNTYPSTI 337 (366)
Q Consensus 312 t~~p~~~~~~~---~~~iE~~WNvyPST~ 337 (366)
+++|.+++-++ +.++|-|||.||-|-
T Consensus 65 sklP~w~r~~~P~~l~v~EkaWNaYPy~~ 93 (250)
T cd08890 65 SRLPSWARAVVPKIFYVTEKAWNYYPYTI 93 (250)
T ss_pred ccChhHHHHhCCcceEEehhhhccCCcee
Confidence 34454443322 467999999999654
No 28
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=24.75 E-value=1.5e+02 Score=27.56 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=29.7
Q ss_pred ch-hhhhhHHhhhhhhhhhhhhhhhHHHHHHHHhhC
Q psy3610 123 QW-SLGSAFYSLAVSIKMNILLYAPALLFAYIICLG 157 (366)
Q Consensus 123 ~w-~lgs~~ySlAVSIKMN~LL~~Pall~~l~~~~g 157 (366)
|| .+++.+..+|+++-+-.++..|++..+++.+..
T Consensus 136 r~l~l~afl~GLs~g~H~~~ll~lP~~~~~~~~~~~ 171 (178)
T PF11028_consen 136 RWLLLIAFLCGLSLGVHLLNLLALPAIALLYFFKRY 171 (178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44 478899999999999999999999998776554
No 29
>KOG3668|consensus
Probab=23.03 E-value=19 Score=35.71 Aligned_cols=27 Identities=37% Similarity=0.484 Sum_probs=20.0
Q ss_pred hcCCCchHHHH----HHHHhhhhhccCCCch
Q psy3610 311 STSYSNTVRYL----ILGVIELCWNTYPSTI 337 (366)
Q Consensus 311 ~t~~p~~~~~~----~~~~iE~~WNvyPST~ 337 (366)
.++.|.+++-+ .+.++|-+||.||-|-
T Consensus 66 ~sk~P~~~r~l~Pk~al~v~EesWNAYPy~r 96 (269)
T KOG3668|consen 66 GSKVPAWLRSLLPKGALIVHEESWNAYPYTR 96 (269)
T ss_pred cccchHHHHHhCCccceEEeeecccccceEE
Confidence 45667666654 4789999999999653
No 30
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=21.37 E-value=71 Score=21.34 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=14.7
Q ss_pred chhhhhhHHHhhcchhHHHHHHHHH
Q psy3610 92 YRIHSIFVLRLFNDPLAVLFFYIAL 116 (366)
Q Consensus 92 kRlHSIfVLRLFND~~a~~~l~~av 116 (366)
+|+|+ -++|-.|++++..++
T Consensus 2 ~~LH~-----w~~~i~al~~lv~~i 21 (27)
T PF03929_consen 2 NDLHK-----WFGDIFALFMLVFAI 21 (27)
T ss_pred hHHHH-----HHHHHHHHHHHHHHH
Confidence 58888 677888877766554
Done!