Query psy3610
Match_columns 366
No_of_seqs 111 out of 208
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 21:00:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gio_A Putative lipoprotein; u 15.0 11 0.00038 31.0 -3.0 11 290-301 49-59 (107)
2 1kcm_A PITP alpha, phosphatidy 11.6 27 0.00094 33.4 -1.8 27 312-338 66-96 (270)
3 1ha8_A Pheromone, ER-23; NMR { 9.1 97 0.0033 22.3 0.7 11 6-16 19-34 (51)
4 2vla_A Bpuji, restriction endo 8.8 1.3E+02 0.0046 28.9 1.9 34 13-47 115-148 (285)
5 2htg_A NHE-1, NHE1 isoform of 6.9 52 0.0018 21.5 -1.4 11 101-111 14-24 (28)
6 3n7x_A Capsid protein; icosahe 6.2 1.5E+02 0.005 27.8 0.7 13 5-17 244-256 (329)
7 3lbw_A M2 protein; proton chan 5.0 3.8E+02 0.013 16.7 1.8 10 279-288 3-12 (23)
8 1wj5_A Hypothetical protein (r 5.0 1.3E+02 0.0043 25.7 -0.5 25 74-98 44-80 (120)
9 3bkd_A Transmembrane domain of 4.9 3.8E+02 0.013 17.2 1.8 10 279-288 6-15 (26)
10 2c9r_A COPC, copper resistance 4.9 2.6E+02 0.009 22.2 1.4 12 201-212 78-89 (102)
No 1
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=15.03 E-value=11 Score=30.99 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=9.0
Q ss_pred hcccchhHHHHH
Q psy3610 290 ARSLHYQFYVWY 301 (366)
Q Consensus 290 ARSLHYQFysWY 301 (366)
.+.|||+|| ||
T Consensus 49 ~~~l~Yrf~-Wy 59 (107)
T 4gio_A 49 AKDVIYKVD-WL 59 (107)
T ss_dssp CEEEEEEEE-EE
T ss_pred ceEEEEEEE-EE
Confidence 578999998 65
No 2
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A*
Probab=11.60 E-value=27 Score=33.35 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=18.2
Q ss_pred cCCCchHHHH----HHHHhhhhhccCCCchh
Q psy3610 312 TSYSNTVRYL----ILGVIELCWNTYPSTIY 338 (366)
Q Consensus 312 t~~p~~~~~~----~~~~iE~~WNvyPST~~ 338 (366)
+++|.+++-+ .+.++|-|||.||-|-+
T Consensus 66 sklP~wi~~~~P~~al~v~EkaWNayPy~~T 96 (270)
T 1kcm_A 66 SKVPTFVRMLAPEGALNIHEKAWNAYPYCRT 96 (270)
T ss_dssp GGSCHHHHTTSCTTTTEEEEEEEEETTEEEE
T ss_pred ccChHHHHHhCCccceEEEeehhccCcceee
Confidence 3455555433 35789999999997643
No 3
>1ha8_A Pheromone, ER-23; NMR {Euplotes raikovi} SCOP: g.58.1.1
Probab=9.05 E-value=97 Score=22.31 Aligned_cols=11 Identities=64% Similarity=1.177 Sum_probs=8.4
Q ss_pred CCCCCcc-----cchh
Q psy3610 6 PDTGPLV-----YPAG 16 (366)
Q Consensus 6 GdTGPLV-----YPAG 16 (366)
.+|||+- ||||
T Consensus 19 ngtgpcanclagypag 34 (51)
T 1ha8_A 19 NGTGPCANCLAGYPAG 34 (51)
T ss_dssp TTTSSTTTTTSSCTTS
T ss_pred CCCcchhhhhccCCCC
Confidence 4688874 8988
No 4
>2vla_A Bpuji, restriction endonuclease R.bpuji; hydrolase, DNA recognition, helix-turn-helix; HET: PG6; 1.30A {Bacillus pumilus}
Probab=8.85 E-value=1.3e+02 Score=28.88 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=27.2
Q ss_pred cchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy3610 13 YPAGFVWLYTGFYHLTDSGTNVRLAQYIYIGLYIA 47 (366)
Q Consensus 13 YPAGfVyiY~~ly~lT~~G~nI~~AQ~IF~~lYl~ 47 (366)
||+||...-.++--+-+ |-.++.+|||-..+--+
T Consensus 115 yP~gh~K~~~I~~~i~~-~I~fkP~~yil~ll~~a 148 (285)
T 2vla_A 115 FPNGMDKLDKVIEKVGA-KIQIRQFPYILQVLLTA 148 (285)
T ss_dssp BSCSSSCHHHHHHHHHT-TCCBCHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHhc-CCeeccHHHHHHHHHhc
Confidence 89999999999988765 55689999987765444
No 5
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=6.89 E-value=52 Score=21.45 Aligned_cols=11 Identities=36% Similarity=0.733 Sum_probs=8.1
Q ss_pred HhhcchhHHHH
Q psy3610 101 RLFNDPLAVLF 111 (366)
Q Consensus 101 RLFND~~a~~~ 111 (366)
-++||..|..+
T Consensus 14 SllNDavaiVl 24 (28)
T 2htg_A 14 SLLNDAVTVVL 24 (28)
T ss_dssp TTTTTTTTTTT
T ss_pred eeecccEEEEE
Confidence 37899987654
No 6
>3n7x_A Capsid protein; icosahedral virus capsid, virus-like particle, capsid protei barrel, parvovirus; 2.50A {Infectious hypodermal and hematopoietinecrosis virus}
Probab=6.21 E-value=1.5e+02 Score=27.82 Aligned_cols=13 Identities=54% Similarity=0.912 Sum_probs=9.9
Q ss_pred CCCCCCcccchhH
Q psy3610 5 LPDTGPLVYPAGF 17 (366)
Q Consensus 5 ~GdTGPLVYPAGf 17 (366)
|..-|-|||||.|
T Consensus 244 kpslgnlvypadh 256 (329)
T 3n7x_A 244 KPSLGNLVYPADH 256 (329)
T ss_dssp CCTTSCCCCCCSS
T ss_pred CccccCccccccc
Confidence 3456889999986
No 7
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=4.96 E-value=3.8e+02 Score=16.72 Aligned_cols=10 Identities=20% Similarity=0.511 Sum_probs=7.5
Q ss_pred HHHHHHHHHH
Q psy3610 279 LFVSNFIGIV 288 (366)
Q Consensus 279 lf~sNfIGi~ 288 (366)
...+|.|||+
T Consensus 3 v~aa~iigIl 12 (23)
T 3lbw_A 3 VVAASIIAIL 12 (26)
T ss_dssp HHHHHHHHHH
T ss_pred ehhHHHHHHH
Confidence 3568899985
No 8
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=4.95 E-value=1.3e+02 Score=25.72 Aligned_cols=25 Identities=24% Similarity=0.037 Sum_probs=18.7
Q ss_pred hhhhhhccchhhhh---h---------hhhchhhhhh
Q psy3610 74 MVDIQISHAVPLIS---I---------FTSYRIHSIF 98 (366)
Q Consensus 74 ~~~~~~~~~~l~~l---~---------~lSkRlHSIf 98 (366)
+||-.+++|-=++. | ..||++||||
T Consensus 44 tVeSLislA~qPv~~s~~~~qv~~~~~stSk~i~sif 80 (120)
T 1wj5_A 44 TVESLQSLASRPVTHSTGSDQVELKDSGTSGVAQRVF 80 (120)
T ss_dssp TCHHHHHHHSSCCSCCSSCCCSSCCCCSSCHHHHHHH
T ss_pred HHHHHHHhccCCccccccchhcccCCccHHHHHHHHH
Confidence 78888888765421 1 5899999998
No 9
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=4.93 E-value=3.8e+02 Score=17.16 Aligned_cols=10 Identities=20% Similarity=0.664 Sum_probs=7.8
Q ss_pred HHHHHHHHHH
Q psy3610 279 LFVSNFIGIV 288 (366)
Q Consensus 279 lf~sNfIGi~ 288 (366)
...+|.|||+
T Consensus 6 v~aa~iiGil 15 (26)
T 3bkd_A 6 VVAASIMGIL 15 (26)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 4578999985
No 10
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=4.88 E-value=2.6e+02 Score=22.15 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=7.5
Q ss_pred EEeecceecCcc
Q psy3610 201 KWTVNYRFLPEY 212 (366)
Q Consensus 201 kWTVNwrFv~Ee 212 (366)
.+||+||-++++
T Consensus 78 ~YtV~WrvvS~D 89 (102)
T 2c9r_A 78 TYKVDWRAVSSD 89 (102)
T ss_dssp EEEEEEEECCTT
T ss_pred eEEEEEEEEecC
Confidence 456666666654
Done!