Query psy3610
Match_columns 366
No_of_seqs 111 out of 208
Neff 3.9
Searched_HMMs 13730
Date Fri Aug 16 21:00:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3610.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3610hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t27a_ d.129.3.4 (A:) Phoshat 22.1 3.8 0.00028 37.0 -2.5 26 312-337 66-95 (269)
2 d1ha8a_ g.58.1.1 (A:) Pheromon 9.1 45 0.0033 22.3 0.7 11 6-16 19-34 (51)
3 d1sddb1 b.6.1.3 (B:1657-1723) 8.3 44 0.0032 23.5 0.5 11 195-205 6-16 (67)
4 d2c9qa1 b.1.18.17 (A:1-102) Co 6.4 88 0.0064 22.5 1.4 12 201-212 78-89 (102)
5 d1wxqa2 d.15.10.2 (A:320-395) 5.7 61 0.0045 23.3 0.1 22 193-214 42-64 (76)
6 d1wj5a_ a.4.5.59 (A:) OB fold- 4.8 85 0.0062 24.8 0.4 11 89-99 71-81 (120)
7 d1ix2a_ b.1.18.17 (A:) Copper 4.0 1.6E+02 0.011 21.1 1.4 12 201-212 78-89 (102)
8 d1pbua_ d.58.46.1 (A:) Elongat 3.7 1.1E+02 0.0078 25.1 0.1 18 277-294 59-76 (162)
9 d1ghha_ d.57.1.1 (A:) DNA dama 3.5 1.3E+02 0.0094 22.0 0.4 14 85-98 20-33 (81)
10 d1a8da2 b.42.4.2 (A:248-452) T 3.5 1.3E+02 0.0098 25.5 0.6 8 205-212 192-199 (205)
No 1
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.08 E-value=3.8 Score=36.95 Aligned_cols=26 Identities=35% Similarity=0.600 Sum_probs=18.3
Q ss_pred cCCCchHHHH----HHHHhhhhhccCCCch
Q psy3610 312 TSYSNTVRYL----ILGVIELCWNTYPSTI 337 (366)
Q Consensus 312 t~~p~~~~~~----~~~~iE~~WNvyPST~ 337 (366)
+++|.+++-+ .+.++|-|||.||-|-
T Consensus 66 sklP~wir~~~P~~al~v~EkaWNaYPy~~ 95 (269)
T d1t27a_ 66 SKVPTFVRMLAPEGALNIHEKAWNAYPYCR 95 (269)
T ss_dssp TTSCHHHHTTSCTTTTCEEEEEEEETTEEE
T ss_pred hhChHHHHHhCCccccEEEEEeeccCceeE
Confidence 4556555533 4678999999999654
No 2
>d1ha8a_ g.58.1.1 (A:) Pheromone ER-23 {Euplotes raikovi [TaxId: 5938]}
Probab=9.05 E-value=45 Score=22.31 Aligned_cols=11 Identities=64% Similarity=1.177 Sum_probs=8.4
Q ss_pred CCCCCcc-----cchh
Q psy3610 6 PDTGPLV-----YPAG 16 (366)
Q Consensus 6 GdTGPLV-----YPAG 16 (366)
.+|||+- ||||
T Consensus 19 ngtgpcanclagypag 34 (51)
T d1ha8a_ 19 NGTGPCANCLAGYPAG 34 (51)
T ss_dssp TTTSSTTTTTSSCTTS
T ss_pred CCCcchhhhhccCCCC
Confidence 4688874 8988
No 3
>d1sddb1 b.6.1.3 (B:1657-1723) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.34 E-value=44 Score=23.45 Aligned_cols=11 Identities=9% Similarity=0.531 Sum_probs=8.8
Q ss_pred CceeEEEEeec
Q psy3610 195 GRVFLHKWTVN 205 (366)
Q Consensus 195 ~R~Fl~kWTVN 205 (366)
|..|.|+|+|+
T Consensus 6 G~t~tY~w~v~ 16 (67)
T d1sddb1 6 NKTYTYVWHAT 16 (67)
T ss_dssp TCCEECCEECC
T ss_pred CCeEEEEEEcC
Confidence 67788999885
No 4
>d2c9qa1 b.1.18.17 (A:1-102) Copper resistance protein C (CopC, PcoC) {Pseudomonas syringae [TaxId: 317]}
Probab=6.41 E-value=88 Score=22.51 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=9.0
Q ss_pred EEeecceecCcc
Q psy3610 201 KWTVNYRFLPEY 212 (366)
Q Consensus 201 kWTVNwrFv~Ee 212 (366)
++||.||.++++
T Consensus 78 ~Y~V~wrvvs~D 89 (102)
T d2c9qa1 78 TYKVDWRAVSSD 89 (102)
T ss_dssp EEEEEEEECCTT
T ss_pred eEEEEEEEEecC
Confidence 577888887766
No 5
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=5.74 E-value=61 Score=23.28 Aligned_cols=22 Identities=32% Similarity=0.194 Sum_probs=17.7
Q ss_pred ccCceeEE-EEeecceecCcccc
Q psy3610 193 DLGRVFLH-KWTVNYRFLPEYIF 214 (366)
Q Consensus 193 df~R~Fl~-kWTVNwrFv~Ee~F 214 (366)
|+++.|.+ +|.+|.|-+|++.=
T Consensus 42 dlg~~~~~A~~~~~g~~v~l~~~ 64 (76)
T d1wxqa2 42 DLGKGFLYAINARTKRRVGEDYE 64 (76)
T ss_dssp HHHHTEEEEEETTTCSBCCTTCC
T ss_pred HHHhheEEEEECcCCEECCCCcC
Confidence 68899998 67889998887643
No 6
>d1wj5a_ a.4.5.59 (A:) OB fold-containing protein 1, Obfc1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.82 E-value=85 Score=24.77 Aligned_cols=11 Identities=27% Similarity=0.066 Sum_probs=9.1
Q ss_pred hhhchhhhhhH
Q psy3610 89 FTSYRIHSIFV 99 (366)
Q Consensus 89 ~lSkRlHSIfV 99 (366)
-.||++||||-
T Consensus 71 stskqI~siFK 81 (120)
T d1wj5a_ 71 GTSGVAQRVFK 81 (120)
T ss_dssp SSCHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 47899999984
No 7
>d1ix2a_ b.1.18.17 (A:) Copper resistance protein C (CopC, PcoC) {Escherichia coli [TaxId: 562]}
Probab=4.02 E-value=1.6e+02 Score=21.06 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=8.4
Q ss_pred EEeecceecCcc
Q psy3610 201 KWTVNYRFLPEY 212 (366)
Q Consensus 201 kWTVNwrFv~Ee 212 (366)
+.||.||-++++
T Consensus 78 ~Y~V~wrv~s~D 89 (102)
T d1ix2a_ 78 TYRVDWRAVSSD 89 (102)
T ss_dssp EEEEEEEECCTT
T ss_pred eEEEEEEEEcCC
Confidence 467777777765
No 8
>d1pbua_ d.58.46.1 (A:) Elongation factor 1-gamma C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.66 E-value=1.1e+02 Score=25.14 Aligned_cols=18 Identities=17% Similarity=0.109 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhcccc
Q psy3610 277 MPLFVSNFIGIVCARSLH 294 (366)
Q Consensus 277 ~~lf~sNfIGi~fARSLH 294 (366)
.+++++|+||..+.|-=|
T Consensus 59 ~~fmt~Nli~Gf~QRle~ 76 (162)
T d1pbua_ 59 QTFMSCNLITGMFQRLDK 76 (162)
T ss_dssp CSTTHHHHHHHHHHHGGG
T ss_pred cEEEEecchhHHHHHHHH
Confidence 357899999999998543
No 9
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=3.49 E-value=1.3e+02 Score=22.00 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=10.8
Q ss_pred hhhhhhhchhhhhh
Q psy3610 85 LISIFTSYRIHSIF 98 (366)
Q Consensus 85 ~~l~~lSkRlHSIf 98 (366)
.+-.=++||+|.+|
T Consensus 20 aL~~EL~kRl~~~f 33 (81)
T d1ghha_ 20 ALAGELSRRIQYAF 33 (81)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhC
Confidence 34456899999987
No 10
>d1a8da2 b.42.4.2 (A:248-452) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]}
Probab=3.47 E-value=1.3e+02 Score=25.47 Aligned_cols=8 Identities=25% Similarity=0.750 Sum_probs=0.0
Q ss_pred cceecCcc
Q psy3610 205 NYRFLPEY 212 (366)
Q Consensus 205 NwrFv~Ee 212 (366)
+|+|+|+|
T Consensus 192 ~W~FIp~d 199 (205)
T d1a8da2 192 DWYFVPTD 199 (205)
T ss_dssp CEEEECCB
T ss_pred ceEeeeCC
Done!