RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3610
(366 letters)
>gnl|CDD|218499 pfam05208, ALG3, ALG3 protein. The formation of N-glycosidic
linkages of glycoproteins involves the ordered assembly
of the common Glc3Man9GlcNAc2 core-oligosaccharide on
the lipid carrier dolichyl pyrophosphate. Whereas early
mannosylation steps occur on the cytoplasmic side of the
endoplasmic reticulum with GDP-Man as donor, the final
reactions from Man5GlcNAc2-PP-Dol to Man9GlcNAc2-PP-Dol
on the lumenal side use Dol-P-Man. ALG3 gene encodes the
Dol-P-Man:Man5GlcNAc2-PP-Dol mannosyltransferase.
Length = 368
Score = 347 bits (892), Expect = e-118
Identities = 176/337 (52%), Positives = 227/337 (67%), Gaps = 21/337 (6%)
Query: 7 DTGPLVYPAGFVWLYTGFYHLTDSGTNVRLAQYIYIGLYIAMLSLVLNVYVRTKKVPPWA 66
DTGPLVYPAGFV++Y+G Y+LTD GTNVRLAQYI+ LY+ L+LVL +YV+T+KVPP+
Sbjct: 50 DTGPLVYPAGFVYIYSGLYYLTDGGTNVRLAQYIFAVLYLLTLALVLRLYVKTRKVPPYV 109
Query: 67 GELTFNQMVDIQISHAVPLISIFTSYRIHSIFVLRLFNDPLAVLFFYIALNLFLSNQWSL 126
+ L+ + S R+HSIFVLRLFND A+L Y+A+NLFL +W+L
Sbjct: 110 ----------------LVLLCL--SKRLHSIFVLRLFNDCFAMLLLYLAINLFLDQRWTL 151
Query: 127 GSAFYSLAVSIKMNILLYAPALLFAYIICLGYLGTLKQLFICAFLQLFFALPFLIENPVA 186
GS YSLAVS+KMN+LLYAPALL + LG +GTL QL +CA +Q+ +PFL P
Sbjct: 152 GSLLYSLAVSVKMNVLLYAPALLLLLLANLGVIGTLLQLAVCALVQILVGVPFLATFPSE 211
Query: 187 YLKGSFDLGRVFLHKWTVNYRFLPEYIFTNSYFHIGLLVVHILLLAVFYKSWLRYLNSYN 246
YL +FDLGR F HKWTVN+RFLPE IF + FH+ LL++H+LLL F K+ +
Sbjct: 212 YLSRAFDLGRQFEHKWTVNWRFLPEEIFESKEFHLALLILHLLLLLAFAKTRWTKFSRRT 271
Query: 247 NYK---SLEKNIKKQVKENKASLDMSIASNLLVMPLFVSNFIGIVCARSLHYQFYVWYYH 303
+ L +KK+++ K + ++ PLF SNFIGI+ ARSLHYQFY WY+
Sbjct: 272 LPQLISQLRLPLKKKLQLAKVEFQDVTPNKIITTPLFTSNFIGILFARSLHYQFYSWYFW 331
Query: 304 SLPYLLWSTSYSNTVRYLILGVIELCWNTYPSTIYSS 340
SLPYLLW T + +R L+LG+IE CWN YPST SS
Sbjct: 332 SLPYLLWRTPFPLGLRLLLLGLIEYCWNVYPSTSQSS 368
>gnl|CDD|221995 pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein
mannosyltransferase. This family contains members that
are not captured by pfam02366.
Length = 158
Score = 30.2 bits (69), Expect = 1.0
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 107 LAVLFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIICLGYLGTLKQLF 166
LA+ F Y AL W L F L K L PALL ++ +L + ++ +
Sbjct: 84 LALYFLYRALEKNKLKWWLLAGVFAGLGFLSKYTAALLLPALLLYLLLGRRWLKS-RKPY 142
Query: 167 ICAFLQLFFALPFLI 181
+ + L P LI
Sbjct: 143 LAGLIALLVFSPVLI 157
>gnl|CDD|237042 PRK12291, PRK12291, apolipoprotein N-acyltransferase; Reviewed.
Length = 418
Score = 30.7 bits (70), Expect = 1.1
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 156 LGYLGTLKQLFICAFLQLFFALPFLIENPVAYLKGSFDLGRVFLHKWTVNYRFLPEYIFT 215
L YL L + I L F L ++NP YL+ G F+H + ++ PE F
Sbjct: 85 LTYLIPLIIILIGLVYGLLFYLLLFLKNP--YLRLLLLFGLSFIHPFGFDW-LNPEIFFV 141
Query: 216 NSYFH-----IGLLVVHILLLAVFYKSWLRYL 242
SYF + L+ + + L YK + +
Sbjct: 142 YSYFDVSKLSLALIFLAAIFLYKKYKKKYKII 173
>gnl|CDD|131967 TIGR02921, PEP_integral, PEP-CTERM family integral membrane
protein. Members of this protein family, found in three
different species so far, have a PEP-CTERM sequence at
the carboxyl-terminus (see model TIGR02595), but are
unusual among PEP-CTERM proteins in having multiple
predicted transmembrane segments. The function is
unknown. It is proposed that a member of the EpsH
family, to be designated exosortase (see TIGR02602),
recognizes and cleaves PEP-CTERM proteins in a manner
analogous to the cleavage of LPXTG proteins by sortase
(see Haft, et al., 2006).
Length = 952
Score = 30.0 bits (67), Expect = 2.2
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 31/118 (26%)
Query: 82 AVPLISI---FTSYRIHSIFVLRLFNDPLAVLFFYIALNLFLSNQWSLGSAFYSLAVSIK 138
A+P I I T + + +++LF A +FF L LFL + + S+
Sbjct: 58 AIPAICIGIGGTCFLKNPTALIKLFYGVEAPIFFICLLRLFLIRELNPASS--------- 108
Query: 139 MNILLYAPALLFAYIICL--GY--------------LGTLKQLF--ICAFLQLFFALP 178
+IL+ + A+ CL G L LF A L FFA+P
Sbjct: 109 -HILINIGIAIAAFAACLFGGVASRFKIGLQWLQLLAAMLMLLFGIYAAALLAFFAIP 165
>gnl|CDD|203138 pfam04977, DivIC, Septum formation initiator. DivIC from B.
subtilis is necessary for both vegetative and
sporulation septum formation. These proteins are mainly
composed of an amino terminal coiled-coil.
Length = 80
Score = 26.8 bits (60), Expect = 5.0
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 229 LLLAVFYKSWLRYLNSYNNYKSLEKNIKKQVKENKA 264
LLL Y +N + Y L + I E
Sbjct: 1 LLLLFQYLLIF-GVNGLSAYYQLNQEIAALQAELAK 35
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 28.5 bits (64), Expect = 6.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 93 RIHSIFVLRLFNDPLAVLFFY 113
RI + VLRL N+P A Y
Sbjct: 144 RIAGLNVLRLINEPTAAALAY 164
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism].
Length = 429
Score = 28.4 bits (64), Expect = 7.4
Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 102 LFNDPLAVLFFYIALNLFLSNQW-SLGSAFYSLAVSIKMNILLYAPALLFAYIICLGYLG 160
L ND + ++ F +AL L SLG A + ILL L + L L
Sbjct: 158 LLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGL-LLGYLLGRLLRRLD 216
Query: 161 TLKQLFICAFLQLFFALPFLI 181
L L F
Sbjct: 217 RRGWTSPLLETLLTLLLAFAA 237
>gnl|CDD|131362 TIGR02309, HpaB-1, 4-hydroxyphenylacetate 3-monooxygenase,
oxygenase component. This gene for this monooxygenase
is found within apparent operons for the degradation of
4-hydroxyphenylacetic acid in Deinococcus, Thermus and
Oceanobacillus. Phylogenetic trees support inclusion of
the Bacillus halodurans sequence above trusted although
the complete 4-hydroxyphenylacetic acid degradation
pathway may not exist in that organism. Generally, this
enzyme acts with the assistance of a small flavin
reductase domain protein (HpaC) to provide the cycle the
flavin reductant for the reaction. This family of
sequences is a member of a larger subfamily of
monooxygenases (pfam03241).
Length = 477
Score = 27.9 bits (62), Expect = 8.9
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 319 RYLILGVIELCWNTYPSTIYSSAALHLCHLVVLFDL 354
R ILG +ELC N Y +T A H+ H VV +
Sbjct: 266 RIFILGDVELCNNAYAAT---GAVNHMAHQVVALKI 298
>gnl|CDD|234941 PRK01315, PRK01315, putative inner membrane protein translocase
component YidC; Provisional.
Length = 329
Score = 27.8 bits (62), Expect = 9.8
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 18/105 (17%)
Query: 27 LTDSGTNVRLAQYIYIGLYIAMLSLVLNVYVRTKKVPPWAGELTFNQMVDIQISHAVPLI 86
L T V++ + I L A + + + TK +PP A Q + +
Sbjct: 167 LNAGNTAVQVVAAVLIILMSASQ-FITQLQLMTKNMPPEAKTGPMAQQQKMLL------- 218
Query: 87 SIFTSYRIHSIFVLRLFNDPLAVLFFYIALNLFLSNQWSLGSAFY 131
Y +F++ P+ VLF+++ SN W++G FY
Sbjct: 219 -----YLFPLMFLVSGIAFPVGVLFYWLT-----SNVWTMGQQFY 253
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.143 0.455
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,135,917
Number of extensions: 1904257
Number of successful extensions: 2741
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2715
Number of HSP's successfully gapped: 181
Length of query: 366
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 268
Effective length of database: 6,590,910
Effective search space: 1766363880
Effective search space used: 1766363880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (26.9 bits)