RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3610
(366 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.008
Identities = 71/426 (16%), Positives = 123/426 (28%), Gaps = 127/426 (29%)
Query: 8 TGPLVYPAGFVWLYTGFYHLTDSGTNVRLAQYIYI-GLYIAML-----SLVLNVYVRTKK 61
V+ V + L + +R A+ + I G +L + L+V + K
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG----VLGSGKTWVALDV-CLSYK 175
Query: 62 VPP-------WAG-------ELTFNQMVDI--QIS---HAVPLISIFTSYRIHSI--FVL 100
V W E + + QI + S RIHSI +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 101 RLFNDPLAVLFFYIALNLFLSNQWSLG--SAFYSLAVSIKMNILLYAPALLFAYIICLGY 158
RL + L L L N + +AF ++ ILL
Sbjct: 236 RLLKSKP----YENCL-LVLLNVQNAKAWNAF-----NLSCKILL--------------- 270
Query: 159 LGTLKQLFICAFLQLFFALPFLIENPVAYLKGSFDLGRVFLHKWTVNYRF--LPEYIFTN 216
T + + FL +++ L + D + L K+ ++ R LP + T
Sbjct: 271 --TTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLKY-LDCRPQDLPREVLT- 324
Query: 217 SYFHIGLLVVHILLLAVFYKSWLRYLNSYNNYKSLEKNIKKQVKENKASL---------- 266
+ L++ +S L +++N+K + N K ++SL
Sbjct: 325 ---------TNPRRLSIIAESIRDGLATWDNWKHV--NCDKLTTIIESSLNVLEPAEYRK 373
Query: 267 ----------DMSIASNLLVM------PLFVSNFIGIVCARSL---HYQFYVWYYHSLPY 307
I + LL + V + + SL + S+ Y
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-Y 432
Query: 308 LLWS--------------TSYSNTVRYLILGVIELCWNTYPSTIYSSAALHL--CHLVVL 351
L Y+ + +I + Y YS HL
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY---FYSHIGHHLKNIEHPER 489
Query: 352 FDLYRN 357
L+R
Sbjct: 490 MTLFRM 495
Score = 34.4 bits (78), Expect = 0.058
Identities = 48/283 (16%), Positives = 100/283 (35%), Gaps = 71/283 (25%)
Query: 19 WLYTGFYHLT---DSGTNVRLAQYIYIGLYIAMLSLVLNVYVRTKKVPP------WAGEL 69
W + LT +S NV L Y ++ + + +P W +
Sbjct: 347 WKHVNCDKLTTIIESSLNV-LEPAEYRKMFDRLSVFPPSA-----HIPTILLSLIWFDVI 400
Query: 70 TFNQMVDIQISHAVPLI---SIFTSYRIHSIFVLRLFNDPLAVLFFYIALNLFLSNQWSL 126
+ MV + H L+ ++ I SI Y+ L + L N+++L
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSI---------------YLELKVKLENEYAL 445
Query: 127 GSAF---YSLAVSIKMNILLYAPALLFAYIIC-LGY-LGTLKQLFICAFLQLFFALPFLI 181
+ Y++ + + L+ P L Y +G+ L ++ +
Sbjct: 446 HRSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHHLKNIEHP------ERMTLFR--- 494
Query: 182 ENPVAYLKGSFDLGRVFLHKWTVNYRFLPEYI-FTNSYFHIGLLVVHILLLAVFYKSWLR 240
VFL ++RFL + I ++ ++ +++ L FYK ++
Sbjct: 495 --------------MVFL-----DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 241 YLNSYNNYKSLEKNIKKQVKENKASLDMSIASNLLVMPLFVSN 283
++ Y+ L I + + + +L S ++LL + L +
Sbjct: 536 --DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
>3rce_A Oligosaccharide transferase to N-glycosylate PROT;
oligosaccharyltransferase, membrane protein, helical
bundle, glycosylation, acceptor peptide, plasma
membrane; HET: PPN; 3.40A {Campylobacter lari}
Length = 724
Score = 33.1 bits (74), Expect = 0.16
Identities = 31/237 (13%), Positives = 70/237 (29%), Gaps = 5/237 (2%)
Query: 106 PLAVLFFYIALNLFLSNQWSLGSA-FYSLAVSIKMNILLYAPALLFAYIICLGYLGTLKQ 164
P+ +L +I L + L S F + + + A++ + + ++
Sbjct: 163 PMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSSYSLNFAMIGLFGLYTLVFHRKEK 222
Query: 165 LFICAFLQLFFALPFLIENPVAYLKGSFDLGRVFLHKWTVNYRFLPEYIFTNSYFHIGLL 224
+F A + AL L L F + Y + S H+
Sbjct: 223 IFYLAIALMIIALSMLAWQYKLALIVLLFAIFAFKEEKINFYMIWALIFISISILHLSGG 282
Query: 225 VVHILLLAVFYKSWLRYLNSYNNYKSLEKNIKKQVKE----NKASLDMSIASNLLVMPLF 280
+ +L FY + + + + N+ + + E + I+S++LV L
Sbjct: 283 LDPVLYQLKFYVFKASDVQNLKDAAFMYFNVNETIMEVNTIDPEVFMQRISSSVLVFILS 342
Query: 281 VSNFIGIVCARSLHYQFYVWYYHSLPYLLWSTSYSNTVRYLILGVIELCWNTYPSTI 337
FI + L ++ ++ + + +
Sbjct: 343 FIGFILLCKDHKSMLLALPMLALGFMALRAGLRFTIYAVPVMALGFGYFLYAFFNFL 399
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.17
Identities = 51/336 (15%), Positives = 89/336 (26%), Gaps = 130/336 (38%)
Query: 2 LTKLPDTGPLVYPAGF---VWLYTGFYHLTDSGTNVRLAQYIYIGLYIAMLSLVLNV--- 55
L + V+ G WL + + Y L +S L
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWL---------ENPSNTPDKD-Y--LLSIPISCPLIGVIQ 245
Query: 56 ---YVRTKKVPPWAGELTFNQMVDIQ---ISHAVPLISIFTSYRIHSIFVLRLFNDPLAV 109
YV T K+ G T ++ H+ L++ AV
Sbjct: 246 LAHYVVTAKL---LG-FTPGELRSYLKGATGHSQGLVT--------------------AV 281
Query: 110 LFFYIALNLFLSNQWSLGSAFYSLAVSIKMNILLYAPALLFAYIICLGYLGTLKQLFICA 169
IA ++ W +F+ A +LF ++G A
Sbjct: 282 A---IA----ETDSW---ESFFVSVRK--------AITVLF-------FIGVRCYE---A 313
Query: 170 FLQLFFALPFLIENPVAYLKGS-------FDLGRVFLHKW--TVNYRFLPEYIFTNSYFH 220
+ P ++E+ + +G +L + + + N LP
Sbjct: 314 YPNTSLP-PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN-SHLPA----GKQVE 367
Query: 221 IGLLVVHILLLAVFYKSWLRYLNSYNNY------KSLEKNIKKQVKENKAS--LDMSIAS 272
I L +N N +SL + +++ KA LD S
Sbjct: 368 ISL------------------VNGAKNLVVSGPPQSLY-GLNLTLRKAKAPSGLDQSRIP 408
Query: 273 NLLVMPLFVSNFIGIVCARSLHYQFYVWYYHSLPYL 308
F + F+ + +HS L
Sbjct: 409 FSERKLKFSNRFLPVASP-----------FHS-HLL 432
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.0
Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 8/20 (40%)
Query: 133 LAVSIKMNILLYA----PAL 148
L S+K LYA PAL
Sbjct: 25 LQASLK----LYADDSAPAL 40
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 29.8 bits (68), Expect = 1.7
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 227 HILLLAVFYKSWLRYL-----NSYNNYKSLEKNIKKQVKENKASLD 267
I + F + Y N ++ I ++VKE++ S+D
Sbjct: 195 WIQICNNFS-PIIDYFPGTHNKLLKNVAFMKSYILEKVKEHQESMD 239
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 29.5 bits (67), Expect = 1.7
Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 39/103 (37%)
Query: 127 GSAFYSLAVSIKMNILLYAPALLFAYIICLGYLGTLKQLFICAFLQL------FFALPF- 179
GSA S+ A A F + G + + CA+++ FF+ P
Sbjct: 221 GSATLSMG---------QAAA-RFGLSLVRALQGE-QGVVECAYVEGDGQYARFFSQPLL 269
Query: 180 ---------------------LIENPVAYLKGSFDLGRVFLHK 201
+E + LK LG F++K
Sbjct: 270 LGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 29.4 bits (67), Expect = 2.3
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 228 ILLLAVFYKSWLRYLNS-----YNNYKSLEKNIKKQVKENKASLD 267
L L + S+L YL N +++ + ++VKE+ SLD
Sbjct: 193 WLQLYNNFPSFLHYLPGSHRKVIKNVAEVKEYVSERVKEHHQSLD 237
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 28.7 bits (65), Expect = 3.1
Identities = 4/38 (10%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 237 SWLRYL-----NSYNNYKSLEKNIKKQVKENKASLDMS 269
L ++ K+ + + + E++ + D +
Sbjct: 206 PVLLHIPALAGKVLRFQKAFLTQLDELLTEHRMTWDPA 243
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 28.7 bits (65), Expect = 3.3
Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 231 LAVFYKSWLRYLNS-----YNNYKSLEKNIKKQVKENKASLD 267
+ + +L++ Y N + + I + V++++A+LD
Sbjct: 197 VFELFSGFLKHFPGTHRQIYRNLQEINTFIGQSVEKHRATLD 238
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP;
2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A*
1dkm_A 1dkn_A 1dko_A 1dkl_A
Length = 410
Score = 28.4 bits (62), Expect = 4.1
Identities = 18/104 (17%), Positives = 35/104 (33%)
Query: 235 YKSWLRYLNSYNNYKSLEKNIKKQVKENKASLDMSIASNLLVMPLFVSNFIGIVCARSLH 294
++ R L N+ +K++ ++ SL ++ S L V VS + A L
Sbjct: 159 RQTAFRELERVLNFPQSNLCLKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLT 218
Query: 295 YQFYVWYYHSLPYLLWSTSYSNTVRYLILGVIELCWNTYPSTIY 338
F + +P W + +L + + T
Sbjct: 219 EIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNAQFYLLQRTPE 262
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 28.0 bits (63), Expect = 5.8
Identities = 6/37 (16%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 237 SWLRYL------NSYNNYKSLEKNIKKQVKENKASLD 267
+LR+ ++ + ++KQ++ +K S+
Sbjct: 212 PFLRFFPNPGLWRLKQAIENRDHMVEKQLRRHKESMV 248
>3hkl_A Muscle, skeletal receptor tyrosine protein kinase; MUSK, receptor
tyrosine kinase, frizzled CRD, ATP-binding, D bond,
glycoprotein; HET: NAG; 2.10A {Rattus norvegicus}
Length = 197
Score = 27.6 bits (60), Expect = 6.2
Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 12/76 (15%)
Query: 284 FIGIVCARSLHYQFYVWYYHSLPY----------LLWSTSYSNTVRYLILGVIELCWNTY 333
+ G VC L V++ S P W+ + + LC + +
Sbjct: 23 YRGEVCDAVLVKDSLVFFNTSYPDPEEAQELLIHTAWNELKAVSPLCRPAAEALLCNHLF 82
Query: 334 P--STIYSSAALHLCH 347
S + +C
Sbjct: 83 QECSPGVLPTPMPICR 98
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 27.6 bits (62), Expect = 7.3
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 17/61 (27%)
Query: 127 GSAFYSLAVSIKMNILLYAPALLFAYIICLGYLGTLKQLFICAFLQ------LFFALPFL 180
GSA S+A YA A+ FA G G + CAF+ FFA
Sbjct: 229 GSATLSMA---------YA-AVKFADACLRGLRGD-AGVIECAFVSSQVTELPFFASKVR 277
Query: 181 I 181
+
Sbjct: 278 L 278
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 27.2 bits (61), Expect = 9.8
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 9/40 (22%)
Query: 237 SWLRYL-----NSYNNYKSLEKN----IKKQVKENKASLD 267
WL+Y + ++ L +N I + + SL
Sbjct: 205 PWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRHCESLR 244
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.143 0.455
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,611,902
Number of extensions: 320801
Number of successful extensions: 623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 617
Number of HSP's successfully gapped: 31
Length of query: 366
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,049,298
Effective search space: 1097359758
Effective search space used: 1097359758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.6 bits)