BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3611
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 119/246 (48%), Gaps = 17/246 (6%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALHDCYES 285
+L + LSDNAFGP E L D L G K+ ++AL + +
Sbjct: 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ-AGAKI-ARALQELAVN 152
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS-DA 344
K + +P L+ I GRNRLEN K A F+ + L V+M QNGI GI L +
Sbjct: 153 KKAKNAP-PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT-- 402
+ L+ L+L DNT T+ G+ L AL P+L L L DCLL + GA+++ +
Sbjct: 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271
Query: 403 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ-----INVSENQFGEEG--VEEMEK 455
+N L+ + L NEI LD V+ +K K + ++ N+F EE V+E+ +
Sbjct: 272 ENIGLQTLRLQYNEIE----LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327
Query: 456 LMKSFG 461
+ + G
Sbjct: 328 VFSTRG 333
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 14/159 (8%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALS-DAFEENKKLRHLNLNDNTITYKGAIPLGQ 60
A F+ + L V+M QNGI GI L + ++L+ L+L DNT T+ G+ L
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLDLVKAM 118
AL P+L L L DCLL + GA+++ + +N L+ + L NEI LD V+ +
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE----LDAVRTL 294
Query: 119 KNKTKLKQ-----INVSENQFGEEG--VEEMEKLMKSFG 150
K K + ++ N+F EE V+E+ ++ + G
Sbjct: 295 KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 64 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM----- 118
K P L + L D + +L+ +T LE + L N + Q G + +A+
Sbjct: 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151
Query: 119 ----KNKTKLKQINVSENQFGEEGVEEMEKLMKS 148
KN L+ I N+ ++E K +S
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 375 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM----- 429
K P L + L D + +L+ +T LE + L N + Q G + +A+
Sbjct: 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151
Query: 430 ----KNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
KN L+ I N+ ++E K +S
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 119/246 (48%), Gaps = 17/246 (6%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALHDCYES 285
+L + LSDNAFGP E L D L G K+ ++AL + +
Sbjct: 94 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ-AGAKI-ARALQELAVN 151
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS-DA 344
K + +P L+ I GRNRLEN K A F+ + L V+M QNGI GI L +
Sbjct: 152 KKAKNAP-PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 210
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT-- 402
+ L+ L+L DNT T+ G+ L AL P+L L L DCLL + GA+++ +
Sbjct: 211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 270
Query: 403 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ-----INVSENQFGEEG--VEEMEK 455
+N L+ + L NEI LD V+ +K K + ++ N+F EE V+E+ +
Sbjct: 271 ENIGLQTLRLQYNEIE----LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 326
Query: 456 LMKSFG 461
+ + G
Sbjct: 327 VFSTRG 332
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 14/159 (8%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALS-DAFEENKKLRHLNLNDNTITYKGAIPLGQ 60
A F+ + L V+M QNGI GI L + ++L+ L+L DNT T+ G+ L
Sbjct: 178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLDLVKAM 118
AL P+L L L DCLL + GA+++ + +N L+ + L NEI LD V+ +
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE----LDAVRTL 293
Query: 119 KNKTKLKQ-----INVSENQFGEEG--VEEMEKLMKSFG 150
K K + ++ N+F EE V+E+ ++ + G
Sbjct: 294 KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 332
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 64 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM----- 118
K P L + L D + +L+ +T LE + L N + Q G + +A+
Sbjct: 91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 150
Query: 119 ----KNKTKLKQINVSENQFGEEGVEEMEKLMKS 148
KN L+ I N+ ++E K +S
Sbjct: 151 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 375 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM----- 429
K P L + L D + +L+ +T LE + L N + Q G + +A+
Sbjct: 91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 150
Query: 430 ----KNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
KN L+ I N+ ++E K +S
Sbjct: 151 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 2/148 (1%)
Query: 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDNTIT 362
RL + LA+V + + L+ + + N I G L ++ L L L + +T
Sbjct: 149 RLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLT 208
Query: 363 YKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK-YLTDNTTLEDVNLTCNEISVQG 421
L ++ SL L+LG L AG + + L+ + L+ + L +I+ G
Sbjct: 209 PANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASG 268
Query: 422 GLDLVKAMKNKTKLKQINVSENQFGEEG 449
DL + ++ K LK+++++ N+ G+EG
Sbjct: 269 CRDLCRVLQAKETLKELSLAGNKLGDEG 296
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENK-KLRHLNLNDNTITYKGAIPLGQ 60
LA+V + + L+ + + N I G L ++ +L L L + +T L
Sbjct: 158 LASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLCG 217
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAK-YLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 119
++ SL L+LG L AG + + L+ + L+ + L +I+ G DL + ++
Sbjct: 218 IVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQ 277
Query: 120 NKTKLKQINVSENQFGEEG 138
K LK+++++ N+ G+EG
Sbjct: 278 AKETLKELSLAGNKLGDEG 296
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLE 97
K++ L+L + ++T G L L LP+L L+L D L AG + + L D LE
Sbjct: 82 KIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLE 141
Query: 98 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 138
+ L ++ L ++ LK++ VS N GE G
Sbjct: 142 KLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAG 182
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 2/147 (1%)
Query: 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENK-NLRHLNLNDNTITY 363
L E K + + + +L + + N + G+ + + ++ L+L + ++T
Sbjct: 36 LTEEHCKDIGSALRANPSLTELCLRTNELGDAGVHLVLQGLQSPTCKIQKLSLQNCSLTE 95
Query: 364 KGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGG 422
G L L LP+L L+L D L AG + + L D LE + L ++
Sbjct: 96 AGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASC 155
Query: 423 LDLVKAMKNKTKLKQINVSENQFGEEG 449
L ++ LK++ VS N GE G
Sbjct: 156 EPLASVLRATRALKELTVSNNDIGEAG 182
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 75/170 (44%), Gaps = 9/170 (5%)
Query: 294 ALKVFIAGRNRLENEG-AKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLR 352
+L+ G N L + G A++ + L+ + + + I G L + + L+
Sbjct: 224 SLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQAKETLK 283
Query: 353 HLNLNDNTITYKGAIPLGQAL----SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 408
L+L N + +GA L ++L +L SL + C L +A ++ LT N L
Sbjct: 284 ELSLAGNKLGDEGARLLCESLLQPGCQLESLWV---KSCSLTAACCQHVSLMLTQNKHLL 340
Query: 409 DVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSENQFGEEGVEEMEKLM 457
++ L+ N++ G +L +A+ T L+ + + + + G + L+
Sbjct: 341 ELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLASLL 390
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 11/144 (7%)
Query: 8 KLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL----S 63
+LKTL E I G L + + L+ L+L N + +GA L ++L
Sbjct: 253 RLKTLWLWEC---DITASGCRDLCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQPGC 309
Query: 64 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-T 122
+L SL + C L +A ++ LT N L ++ L+ N++ G +L +A+ T
Sbjct: 310 QLESLWV---KSCSLTAACCQHVSLMLTQNKHLLELQLSSNKLGDSGIQELCQALSQPGT 366
Query: 123 KLKQINVSENQFGEEGVEEMEKLM 146
L+ + + + + G + L+
Sbjct: 367 TLRVLCLGDCEVTNSGCSSLASLL 390
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 44/267 (16%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALH 280
L++ + L EL L+DN G G++ L + L+ C T C+ L+ L
Sbjct: 105 LRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQC-RLEKLQLEYCNLTATSCEPLASVLR 163
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKT-LERVEMPQNGIYHVGIT 339
++ KE + N L G ++L K LE +++ GI
Sbjct: 164 --VKADFKE--------LVLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCK 213
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPS--LAILNLGDCLLKSAGASSI 397
L D +L+ L+L+ N + G L L LPS L L L +C + + G +
Sbjct: 214 DLCDVVASKASLQELDLSSNKLGNAGIAALCPGL-LLPSCKLRTLWLWECDITAEGCKDL 272
Query: 398 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM---------------------------- 429
+ L +L++++L NE+ +G L +++
Sbjct: 273 CRVLRAKQSLKELSLASNELKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSV 332
Query: 430 -KNKTKLKQINVSENQFGEEGVEEMEK 455
L ++ +S N G+EGV+E+ K
Sbjct: 333 LTKSRSLLELQMSSNPLGDEGVQELCK 359
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFE-ENKKLRHLNLNDNTITYKGAIPLGQ 60
L V +L+ +++ N + + GI AL + KLR L L + IT +G L +
Sbjct: 215 LCDVVASKASLQELDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCR 274
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMK 119
L SL L+L LK GA + + L + LE + + ++ +
Sbjct: 275 VLRAKQSLKELSLASNELKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLT 334
Query: 120 NKTKLKQINVSENQFGEEGVEEMEK 144
L ++ +S N G+EGV+E+ K
Sbjct: 335 KSRSLLELQMSSNPLGDEGVQELCK 359
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENK-KLRHLNLNDNTITYKGAIPLGQ 60
LA+V + + + + N ++ G+ L +++ +L L L + IT L
Sbjct: 158 LASVLRVKADFKELVLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCD 217
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAK-YLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 119
++ SL L+L L +AG +++ L + L + L +I+ +G DL + ++
Sbjct: 218 VVASKASLQELDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLR 277
Query: 120 NKTKLKQINVSENQFGEEG 138
K LK+++++ N+ +EG
Sbjct: 278 AKQSLKELSLASNELKDEG 296
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 115/288 (39%), Gaps = 55/288 (19%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCC-------------------------- 254
L+ A EL LS+N GV L L+ S C
Sbjct: 162 LRVKADFKELVLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVAS 221
Query: 255 -------------FAXXXXXXXXXXXXITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 301
+ CKL + L +C ++ EG +V A
Sbjct: 222 KASLQELDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITA--EGCKDLCRVLRAK 279
Query: 302 R---------NRLENEGAKMLA-AVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 351
+ N L++EGA++L ++ + LE + + + ++++L
Sbjct: 280 QSLKELSLASNELKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSL 339
Query: 352 RHLNLNDNTITYKGAIPLGQALSKLPSLAI--LNLGDCLLKSAGASSIAKYLTDNTTLED 409
L ++ N + +G L +ALS+ P + L LGDC + ++G SS+A L N +L +
Sbjct: 340 LELQMSSNPLGDEGVQELCKALSQ-PDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRE 398
Query: 410 VNLTCNEISVQGGLDLVKAMKNKT-KLKQINVSENQFGEEGVEEMEKL 456
++L+ N + G L L++++K + L+Q+ + + + E E++ L
Sbjct: 399 LDLSNNCMGGPGVLQLLESLKQPSCTLQQLVLYDIYWTNEVEEQLRAL 446
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 32/169 (18%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
A + L+ + V + G+ +S A N L LNL N + G + Q L
Sbjct: 21 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80
Query: 63 SKLPSLAI--LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN-------EISVQGGLD 113
+ PS I L+L +C L AG ++ L TL++++L+ N ++ +G LD
Sbjct: 81 -QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139
Query: 114 ----------------------LVKAMKNKTKLKQINVSENQFGEEGVE 140
L ++ K K++ VS N E GV
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 32/169 (18%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
A + L+ + V + G+ +S A N L LNL N + G + Q L
Sbjct: 21 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80
Query: 374 SKLPSLAI--LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN-------EISVQGGLD 424
+ PS I L+L +C L AG ++ L TL++++L+ N ++ +G LD
Sbjct: 81 -QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139
Query: 425 ----------------------LVKAMKNKTKLKQINVSENQFGEEGVE 451
L ++ K K++ VS N E GV
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENK-KLRHLNLNDNTITYKGAIPLGQ 60
LA+V + + + + N I G+ L +++ +L L L +T L
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAK-YLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 119
++ SL L LG L G + + L ++ L + + I+ +G DL + ++
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281
Query: 120 NKTKLKQINVSENQFGEEG 138
K LK+++++ N+ G+EG
Sbjct: 282 AKESLKELSLAGNELGDEG 300
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 94/260 (36%), Gaps = 42/260 (16%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALH 280
L+ L EL+L N G +GV + L++ C GC +LS L
Sbjct: 52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG-AGCGVLSSTLR 110
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLA-AVFKKLKTLERVEMPQNGIYHVGIT 339
+ L+ N L + G ++L + LE++++ +
Sbjct: 111 ----------TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPS-LAILNLGDCLLKSAGASSIA 398
L+ + + L +++N I G L Q L P L L L C + S +
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220
Query: 399 KYLTDNTTLEDVNLTCNE-----------------------------ISVQGGLDLVKAM 429
+ +L ++ L N+ I+ +G DL + +
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280
Query: 430 KNKTKLKQINVSENQFGEEG 449
+ K LK+++++ N+ G+EG
Sbjct: 281 RAKESLKELSLAGNELGDEG 300
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 32/168 (19%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
A + L+ + V + G+ +S A N L LNL N + G + Q L
Sbjct: 20 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 79
Query: 63 SKLPSLAI--LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN-------EISVQGGLD 113
+ PS I L+L +C L AG ++ L TL++++L+ N ++ +G LD
Sbjct: 80 -QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 138
Query: 114 ----------------------LVKAMKNKTKLKQINVSENQFGEEGV 139
L ++ K K++ VS N E GV
Sbjct: 139 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 186
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 32/168 (19%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
A + L+ + V + G+ +S A N L LNL N + G + Q L
Sbjct: 20 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 79
Query: 374 SKLPSLAI--LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN-------EISVQGGLD 424
+ PS I L+L +C L AG ++ L TL++++L+ N ++ +G LD
Sbjct: 80 -QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 138
Query: 425 ----------------------LVKAMKNKTKLKQINVSENQFGEEGV 450
L ++ K K++ VS N E GV
Sbjct: 139 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 186
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENK-KLRHLNLNDNTITYKGAIPLGQ 60
LA+V + + + + N I G+ L +++ +L L L +T L
Sbjct: 161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 220
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAK-YLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 119
++ SL L LG L G + + L ++ L + + I+ +G DL + ++
Sbjct: 221 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 280
Query: 120 NKTKLKQINVSENQFGEEG 138
K LK+++++ N+ G+EG
Sbjct: 281 AKESLKELSLAGNELGDEG 299
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 94/260 (36%), Gaps = 42/260 (16%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALH 280
L+ L EL+L N G +GV + L++ C GC +LS L
Sbjct: 51 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG-AGCGVLSSTLR 109
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLA-AVFKKLKTLERVEMPQNGIYHVGIT 339
+ L+ N L + G ++L + LE++++ +
Sbjct: 110 ----------TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 159
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPS-LAILNLGDCLLKSAGASSIA 398
L+ + + L +++N I G L Q L P L L L C + S +
Sbjct: 160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 219
Query: 399 KYLTDNTTLEDVNLTCNE-----------------------------ISVQGGLDLVKAM 429
+ +L ++ L N+ I+ +G DL + +
Sbjct: 220 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 279
Query: 430 KNKTKLKQINVSENQFGEEG 449
+ K LK+++++ N+ G+EG
Sbjct: 280 RAKESLKELSLAGNELGDEG 299
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 20/129 (15%)
Query: 319 KLKTLERVEMPQNGIYHVGITA--LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 376
KL +LE +++ N I + LSD E L+HL ++ N I+ G + +S+
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGE---LKHLAISGNKIS--GDV----DVSRC 196
Query: 377 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 436
+L L++ S S+ +L D + L+ ++++ N++S D +A+ T+LK
Sbjct: 197 VNLEFLDV-----SSNNFSTGIPFLGDCSALQHLDISGNKLSG----DFSRAISTCTELK 247
Query: 437 QINVSENQF 445
+N+S NQF
Sbjct: 248 LLNISSNQF 256
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 20/129 (15%)
Query: 8 KLKTLEHVEMPQNGIYHVGITA--LSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
KL +LE +++ N I + LSD E L+HL ++ N I+ G + +S+
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGE---LKHLAISGNKIS--GDV----DVSRC 196
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L L++ S S+ +L D + L+ ++++ N++S D +A+ T+LK
Sbjct: 197 VNLEFLDV-----SSNNFSTGIPFLGDCSALQHLDISGNKLSG----DFSRAISTCTELK 247
Query: 126 QINVSENQF 134
+N+S NQF
Sbjct: 248 LLNISSNQF 256
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 20/129 (15%)
Query: 319 KLKTLERVEMPQNGIYHVGITA--LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 376
KL +LE +++ N I + LSD E L+HL ++ N I+ G + +S+
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGE---LKHLAISGNKIS--GDV----DVSRC 199
Query: 377 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 436
+L L++ S S+ +L D + L+ ++++ N++S D +A+ T+LK
Sbjct: 200 VNLEFLDV-----SSNNFSTGIPFLGDCSALQHLDISGNKLSG----DFSRAISTCTELK 250
Query: 437 QINVSENQF 445
+N+S NQF
Sbjct: 251 LLNISSNQF 259
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 20/129 (15%)
Query: 8 KLKTLEHVEMPQNGIYHVGITA--LSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
KL +LE +++ N I + LSD E L+HL ++ N I+ G + +S+
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGE---LKHLAISGNKIS--GDV----DVSRC 199
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L L++ S S+ +L D + L+ ++++ N++S D +A+ T+LK
Sbjct: 200 VNLEFLDV-----SSNNFSTGIPFLGDCSALQHLDISGNKLSG----DFSRAISTCTELK 250
Query: 126 QINVSENQF 134
+N+S NQF
Sbjct: 251 LLNISSNQF 259
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 21/142 (14%)
Query: 306 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKG 365
ENE K+ +VF L + VE+ N + GI + AF+ K L ++ + D IT
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE--NGAFQGMKKLSYIRIADTNIT--- 184
Query: 366 AIPLGQALSKLPSLAILNL-GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS-VQGGL 423
IP G PSL L+L G+ + K AS L L + L+ N IS V G
Sbjct: 185 TIPQGLP----PSLTELHLDGNKITKVDAAS-----LKGLNNLAKLGLSFNSISAVDNG- 234
Query: 424 DLVKAMKNKTKLKQINVSENQF 445
++ N L++++++ N+
Sbjct: 235 ----SLANTPHLRELHLNNNKL 252
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 21/142 (14%)
Query: 306 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKG 365
ENE K+ +VF L + VE+ N + GI + AF+ K L ++ + D IT
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE--NGAFQGMKKLSYIRIADTNIT--- 184
Query: 366 AIPLGQALSKLPSLAILNL-GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS-VQGGL 423
IP G PSL L+L G+ + K AS L L + L+ N IS V G
Sbjct: 185 TIPQGLP----PSLTELHLDGNKITKVDAAS-----LKGLNNLAKLGLSFNSISAVDNG- 234
Query: 424 DLVKAMKNKTKLKQINVSENQF 445
++ N L++++++ N+
Sbjct: 235 ----SLANTPHLRELHLNNNKL 252
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375
VF L L ++++ +N I + L F++ NL+ L + DN + Y +A S
Sbjct: 99 VFTGLSNLTKLDISENKI----VILLDYMFQDLYNLKSLEVGDNDLVYISH----RAFSG 150
Query: 376 LPSLAILNLGDCLLKSAGASSIA 398
L SL L L C L S +++
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALS 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,479,002
Number of Sequences: 62578
Number of extensions: 387116
Number of successful extensions: 919
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 830
Number of HSP's gapped (non-prelim): 82
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)