Query psy3611
Match_columns 472
No_of_seqs 147 out of 2333
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 21:01:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1909|consensus 100.0 1.5E-29 3.3E-34 227.8 18.5 299 114-457 22-324 (382)
2 cd00116 LRR_RI Leucine-rich re 100.0 2.6E-26 5.6E-31 220.9 33.8 236 224-471 80-317 (319)
3 cd00116 LRR_RI Leucine-rich re 100.0 5.5E-26 1.2E-30 218.7 31.1 313 43-445 3-319 (319)
4 PLN00113 leucine-rich repeat r 100.0 4.1E-28 8.9E-33 266.8 14.7 376 3-471 86-462 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.3E-27 2.9E-32 262.8 13.4 378 2-471 204-581 (968)
6 KOG1909|consensus 99.9 3.1E-24 6.8E-29 193.7 21.5 346 30-453 22-377 (382)
7 KOG4194|consensus 99.9 2.4E-26 5.2E-31 219.2 -2.4 196 221-454 241-437 (873)
8 KOG4194|consensus 99.9 8.1E-26 1.8E-30 215.7 0.4 370 4-459 96-466 (873)
9 KOG0444|consensus 99.9 1.3E-24 2.7E-29 209.1 -3.3 349 2-471 24-372 (1255)
10 KOG0444|consensus 99.9 2.6E-23 5.5E-28 200.2 -3.0 326 1-444 46-373 (1255)
11 KOG0618|consensus 99.8 1.9E-21 4.2E-26 195.2 0.8 397 5-471 40-486 (1081)
12 KOG0472|consensus 99.8 8.1E-21 1.8E-25 174.2 -0.6 341 2-446 198-541 (565)
13 COG5238 RNA1 Ran GTPase-activa 99.8 5.8E-18 1.3E-22 148.1 15.7 225 221-448 88-318 (388)
14 KOG4308|consensus 99.8 1.8E-18 4E-23 170.8 10.1 373 40-470 89-469 (478)
15 KOG0472|consensus 99.7 4.2E-19 9.2E-24 163.1 -2.3 91 371-471 429-538 (565)
16 KOG4308|consensus 99.7 5.8E-17 1.3E-21 160.2 10.8 377 12-447 89-474 (478)
17 COG5238 RNA1 Ran GTPase-activa 99.7 3.2E-15 6.9E-20 131.1 16.7 237 224-472 29-283 (388)
18 KOG0618|consensus 99.7 2.7E-17 5.8E-22 165.8 4.0 326 15-469 183-508 (1081)
19 PRK15387 E3 ubiquitin-protein 99.6 5E-16 1.1E-20 160.7 9.3 265 10-453 201-465 (788)
20 PLN03210 Resistant to P. syrin 99.6 4.8E-16 1E-20 172.2 9.1 347 3-444 551-904 (1153)
21 PLN03210 Resistant to P. syrin 99.6 1.2E-15 2.7E-20 169.0 10.5 363 11-470 533-902 (1153)
22 KOG4341|consensus 99.5 2.1E-14 4.7E-19 133.2 10.4 214 222-466 239-457 (483)
23 PRK15370 E3 ubiquitin-protein 99.5 1.4E-14 3.1E-19 150.8 7.7 55 67-135 200-254 (754)
24 PRK15387 E3 ubiquitin-protein 99.5 1.6E-14 3.4E-19 149.8 7.2 95 10-136 222-316 (788)
25 KOG4341|consensus 99.5 3.4E-14 7.3E-19 131.9 8.1 188 224-440 267-459 (483)
26 PRK15370 E3 ubiquitin-protein 99.5 8.9E-14 1.9E-18 145.0 7.4 261 66-456 178-438 (754)
27 KOG4237|consensus 99.4 3.7E-15 8.1E-20 137.1 -4.2 208 220-471 269-498 (498)
28 KOG4237|consensus 99.2 9.7E-13 2.1E-17 121.4 -0.8 93 29-135 60-153 (498)
29 KOG3207|consensus 99.2 2.1E-12 4.5E-17 120.8 1.2 243 15-335 98-340 (505)
30 KOG2120|consensus 99.2 5.8E-11 1.2E-15 106.0 10.0 59 67-132 186-244 (419)
31 KOG2120|consensus 99.2 5.8E-11 1.2E-15 106.0 9.5 200 225-459 185-388 (419)
32 KOG3207|consensus 99.1 9.6E-12 2.1E-16 116.4 0.2 62 70-134 97-158 (505)
33 KOG0617|consensus 99.0 2.7E-12 6E-17 105.3 -8.4 178 224-446 32-212 (264)
34 PF14580 LRR_9: Leucine-rich r 99.0 2.9E-10 6.3E-15 97.2 2.6 125 293-438 19-145 (175)
35 KOG0617|consensus 99.0 4.1E-12 8.8E-17 104.3 -8.5 167 242-446 20-186 (264)
36 KOG1259|consensus 98.9 5.3E-10 1.2E-14 100.0 1.7 130 224-390 283-412 (490)
37 PF14580 LRR_9: Leucine-rich r 98.8 1.9E-09 4.1E-14 92.2 2.8 136 6-162 15-152 (175)
38 KOG1259|consensus 98.7 6E-09 1.3E-13 93.4 1.8 127 294-446 285-412 (490)
39 KOG2982|consensus 98.6 6.5E-08 1.4E-12 86.8 5.1 65 293-363 199-263 (418)
40 COG4886 Leucine-rich repeat (L 98.5 1.4E-07 3.1E-12 93.4 4.8 171 255-471 116-287 (394)
41 KOG1947|consensus 98.4 3E-06 6.5E-11 86.3 13.4 189 222-451 240-446 (482)
42 KOG2982|consensus 98.4 4E-07 8.7E-12 81.8 5.8 65 320-390 198-262 (418)
43 KOG3665|consensus 98.4 2.6E-06 5.6E-11 88.8 10.9 208 226-465 61-279 (699)
44 KOG1859|consensus 98.3 9.7E-08 2.1E-12 95.3 -0.0 126 295-445 166-291 (1096)
45 PLN03150 hypothetical protein; 98.2 1.6E-06 3.5E-11 90.4 6.4 93 40-144 420-512 (623)
46 KOG1947|consensus 98.2 7.4E-06 1.6E-10 83.4 9.9 120 5-134 183-307 (482)
47 KOG3665|consensus 98.2 6.8E-06 1.5E-10 85.7 9.3 113 10-136 122-234 (699)
48 KOG1859|consensus 98.1 7.5E-07 1.6E-11 89.2 1.6 136 293-448 187-324 (1096)
49 PF13855 LRR_8: Leucine rich r 98.1 1.2E-06 2.5E-11 61.4 2.0 61 10-78 1-61 (61)
50 KOG0531|consensus 98.1 2.3E-07 5E-12 92.3 -2.3 85 34-135 91-175 (414)
51 KOG0532|consensus 98.1 1.7E-07 3.6E-12 91.3 -4.1 104 295-419 145-248 (722)
52 KOG0532|consensus 98.1 1.3E-07 2.8E-12 92.1 -5.0 140 289-455 117-256 (722)
53 COG4886 Leucine-rich repeat (L 98.0 2.7E-06 5.8E-11 84.4 3.1 149 293-471 116-265 (394)
54 PLN03150 hypothetical protein; 98.0 6.4E-06 1.4E-10 86.0 5.5 105 12-132 420-525 (623)
55 KOG0531|consensus 98.0 8E-07 1.7E-11 88.5 -1.2 109 6-136 91-200 (414)
56 KOG4658|consensus 97.9 4.4E-06 9.6E-11 89.4 2.9 109 8-133 543-653 (889)
57 KOG4658|consensus 97.9 5.1E-06 1.1E-10 88.9 2.3 86 36-132 543-628 (889)
58 PF13855 LRR_8: Leucine rich r 97.9 4E-06 8.7E-11 58.7 0.5 11 349-359 25-35 (61)
59 KOG4242|consensus 97.8 1.8E-05 3.9E-10 75.7 3.6 190 256-460 301-495 (553)
60 PF12799 LRR_4: Leucine Rich r 97.5 0.0001 2.2E-09 47.3 3.2 36 406-446 2-37 (44)
61 PF12799 LRR_4: Leucine Rich r 97.3 0.00026 5.7E-09 45.4 3.4 36 378-418 2-37 (44)
62 KOG4579|consensus 97.3 6.1E-05 1.3E-09 60.3 0.3 109 294-419 28-137 (177)
63 KOG4579|consensus 97.3 0.00012 2.6E-09 58.6 2.0 113 322-451 28-141 (177)
64 KOG1644|consensus 97.3 8.6E-05 1.9E-09 63.5 1.1 128 295-442 21-149 (233)
65 KOG2123|consensus 97.2 0.00012 2.6E-09 65.6 1.0 103 321-438 19-122 (388)
66 KOG4242|consensus 97.1 0.00029 6.3E-09 67.7 2.5 352 11-432 136-495 (553)
67 KOG2123|consensus 96.9 0.00034 7.4E-09 62.8 0.8 81 11-106 20-100 (388)
68 PRK15386 type III secretion pr 96.3 0.0017 3.8E-08 62.9 1.9 138 220-415 47-187 (426)
69 KOG3735|consensus 96.3 0.012 2.5E-07 54.6 6.5 121 320-440 197-320 (353)
70 smart00368 LRR_RI Leucine rich 96.2 0.0062 1.3E-07 34.7 2.9 22 350-371 3-24 (28)
71 KOG1644|consensus 96.1 0.0024 5.2E-08 54.9 1.2 109 10-132 42-150 (233)
72 KOG3735|consensus 96.1 0.02 4.3E-07 53.1 7.0 119 348-466 197-318 (353)
73 KOG2739|consensus 96.0 0.0032 6.9E-08 56.3 1.4 107 8-128 41-149 (260)
74 smart00368 LRR_RI Leucine rich 95.9 0.014 3E-07 33.2 3.3 24 434-457 3-26 (28)
75 KOG2739|consensus 95.8 0.0027 5.9E-08 56.8 0.2 115 34-162 39-155 (260)
76 KOG3864|consensus 95.8 0.012 2.6E-07 50.7 4.0 34 405-442 151-185 (221)
77 KOG3864|consensus 95.6 0.0085 1.8E-07 51.6 2.4 82 378-470 102-185 (221)
78 PRK15386 type III secretion pr 95.5 0.014 3E-07 56.8 4.0 135 253-443 50-187 (426)
79 PF13516 LRR_6: Leucine Rich r 95.4 0.015 3.2E-07 31.7 2.2 23 9-31 1-23 (24)
80 PF13516 LRR_6: Leucine Rich r 94.9 0.022 4.8E-07 31.0 2.0 21 433-453 2-22 (24)
81 smart00367 LRR_CC Leucine-rich 91.8 0.16 3.5E-06 28.1 2.2 23 254-276 1-24 (26)
82 smart00367 LRR_CC Leucine-rich 90.8 0.27 5.9E-06 27.2 2.5 23 432-454 1-24 (26)
83 PF13306 LRR_5: Leucine rich r 86.4 0.37 8E-06 38.9 1.4 60 317-386 31-90 (129)
84 PF13306 LRR_5: Leucine rich r 85.9 0.52 1.1E-05 38.0 2.1 107 4-131 6-112 (129)
85 PF13504 LRR_7: Leucine rich r 85.5 0.62 1.3E-05 22.9 1.4 13 67-79 2-14 (17)
86 KOG3763|consensus 82.9 1.9 4.2E-05 43.2 4.8 67 347-419 216-284 (585)
87 PF00560 LRR_1: Leucine Rich R 79.9 0.25 5.4E-06 26.1 -1.4 10 408-417 3-12 (22)
88 PF03382 DUF285: Mycoplasma pr 70.8 2.4 5.2E-05 33.9 1.4 91 2-102 3-93 (120)
89 KOG3763|consensus 70.5 5.2 0.00011 40.3 3.9 37 38-76 218-254 (585)
90 smart00369 LRR_TYP Leucine-ric 59.6 9.5 0.00021 20.7 2.1 13 67-79 3-15 (26)
91 smart00370 LRR Leucine-rich re 59.6 9.5 0.00021 20.7 2.1 13 67-79 3-15 (26)
92 smart00365 LRR_SD22 Leucine-ri 53.3 11 0.00024 20.9 1.6 14 10-23 2-15 (26)
93 PF03382 DUF285: Mycoplasma pr 46.9 7.6 0.00016 31.0 0.4 12 340-351 27-38 (120)
94 KOG0473|consensus 41.7 0.74 1.6E-05 40.9 -6.5 82 293-389 42-123 (326)
95 KOG0473|consensus 39.0 1.1 2.5E-05 39.8 -5.7 88 34-136 38-125 (326)
96 smart00364 LRR_BAC Leucine-ric 29.7 24 0.00053 19.6 0.5 14 406-419 3-16 (26)
97 PF07723 LRR_2: Leucine Rich R 22.8 68 0.0015 17.6 1.5 11 351-361 2-12 (26)
No 1
>KOG1909|consensus
Probab=99.97 E-value=1.5e-29 Score=227.84 Aligned_cols=299 Identities=39% Similarity=0.587 Sum_probs=248.6
Q ss_pred HHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhH-HhhhccCCCCCCccccchhhhcccCCccccCCCccCCCC
Q psy3611 114 LVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA-ALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHND 192 (472)
Q Consensus 114 l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~-~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 192 (472)
+...+....+++.+++++|.++.+....+++.++..+.|+ ..+-+.+.++...++|.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e---------------------- 79 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPE---------------------- 79 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHH----------------------
Confidence 3444444455555555555555555555555555555442 23334445555555554
Q ss_pred CCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHH
Q psy3611 193 SNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGC 272 (472)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~ 272 (472)
....+ ...+..++.|++|+||.|.+++.++..+..++++ |..|++|.|.+|.+++.+.
T Consensus 80 -------------------~L~~l-~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s--~~~L~eL~L~N~Glg~~ag 137 (382)
T KOG1909|consen 80 -------------------ALKML-SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSS--CTDLEELYLNNCGLGPEAG 137 (382)
T ss_pred -------------------HHHHH-HHHHhcCCceeEeeccccccCccchHHHHHHHHh--ccCHHHHhhhcCCCChhHH
Confidence 22223 3335566799999999999999999999999975 6799999999999999999
Q ss_pred HHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCcc
Q psy3611 273 KLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLR 352 (472)
Q Consensus 273 ~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~ 352 (472)
..+++++..+. ...+.+..+.|+.+...+|++.+.|+..+...+...++|+.+.++.|.|...|+..+..++..+++|+
T Consensus 138 ~~l~~al~~l~-~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Le 216 (382)
T KOG1909|consen 138 GRLGRALFELA-VNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLE 216 (382)
T ss_pred HHHHHHHHHHH-HHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcce
Confidence 99999988887 56788899999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhc-CCCCCEEECcCCCCCchhHHHHHHHHhc
Q psy3611 353 HLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKN 431 (472)
Q Consensus 353 ~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 431 (472)
.|||.+|.++.+|...+++.++.+++|+.|++++|.+.+.|+..+..++.. ++.|+.+.+.+|.|+.+++..+..++..
T Consensus 217 vLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e 296 (382)
T KOG1909|consen 217 VLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE 296 (382)
T ss_pred eeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999888864 5999999999999999999999999999
Q ss_pred CCcccEEEccCCCC--ChhHHHHHHHHH
Q psy3611 432 KTKLKQINVSENQF--GEEGVEEMEKLM 457 (472)
Q Consensus 432 ~~~L~~L~l~~n~i--~~~~~~~l~~~l 457 (472)
.+.|+.|++++|.+ .+.++..+...+
T Consensus 297 k~dL~kLnLngN~l~e~de~i~ei~~~~ 324 (382)
T KOG1909|consen 297 KPDLEKLNLNGNRLGEKDEGIDEIASKF 324 (382)
T ss_pred chhhHHhcCCcccccccchhHHHHHHhc
Confidence 99999999999999 667777666655
No 2
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.96 E-value=2.6e-26 Score=220.94 Aligned_cols=236 Identities=42% Similarity=0.648 Sum_probs=179.4
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCC
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 303 (472)
++.|++|++++|.+.......+...... ++|++|++++|++++.+...+...+... +++|+.|++++|
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~---~~L~~L~ls~~~~~~~~~~~l~~~l~~~---------~~~L~~L~L~~n 147 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS---SSLQELKLNNNGLGDRGLRLLAKGLKDL---------PPALEKLVLGRN 147 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc---CcccEEEeeCCccchHHHHHHHHHHHhC---------CCCceEEEcCCC
Confidence 3677777777777655444445444321 4577778877777776666666555542 156888888888
Q ss_pred CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEE
Q psy3611 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383 (472)
Q Consensus 304 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 383 (472)
.+...+...+...+..+++|++|++++|.+++.+...++..+..+++|++|++++|.+++.+...+...+..+++|++|+
T Consensus 148 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ 227 (319)
T cd00116 148 RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227 (319)
T ss_pred cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEe
Confidence 88776666677777778888888888888887777777777777888888888888888777767777788888888888
Q ss_pred cCCCCCChHHHHHHHHHhh-cCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhC-C
Q psy3611 384 LGDCLLKSAGASSIAKYLT-DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF-G 461 (472)
Q Consensus 384 l~~~~i~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~-~ 461 (472)
+++|.+++.+...+...+. ..+.|+.|++++|.+++.+...+...+..+++|+++++++|.++..+...++..++.. +
T Consensus 228 ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~ 307 (319)
T cd00116 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGN 307 (319)
T ss_pred cCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCC
Confidence 8888888777666655443 2578888999888888888888888888888889999999988888888888888888 7
Q ss_pred ceeEEecCCC
Q psy3611 462 MAAALVLEDD 471 (472)
Q Consensus 462 ~L~~L~l~~~ 471 (472)
.++.+++.++
T Consensus 308 ~~~~~~~~~~ 317 (319)
T cd00116 308 ELESLWVKDD 317 (319)
T ss_pred chhhcccCCC
Confidence 8888888765
No 3
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.96 E-value=5.5e-26 Score=218.68 Aligned_cols=313 Identities=29% Similarity=0.420 Sum_probs=213.0
Q ss_pred eeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccC--cchHHHHHHHhhh
Q psy3611 43 LNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS--VQGGLDLVKAMKN 120 (472)
Q Consensus 43 L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~--~~~~~~l~~~l~~ 120 (472)
|+|..+.+....+. ..+..+.+|++++++++.+++.+...++..+...+.+++++++++.+. ..++..++..+..
T Consensus 3 l~L~~~~l~~~~~~---~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 3 LSLKGELLKTERAT---ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred cccccCcccccchH---HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 44555544433332 233444456666666666665555556666666666666666666655 4445555666666
Q ss_pred CCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCccccc
Q psy3611 121 KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNAS 200 (472)
Q Consensus 121 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (472)
+++|+.|++++|.+....+..+...
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l------------------------------------------------------- 104 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESL------------------------------------------------------- 104 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHH-------------------------------------------------------
Confidence 6677777777666654333322221
Q ss_pred ccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHH
Q psy3611 201 NQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280 (472)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~ 280 (472)
... +.|++|++++|.+++.+...+...+... .++|++|++++|.++..+...+...+.
T Consensus 105 --------------------~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 105 --------------------LRS-SSLQELKLNNNGLGDRGLRLLAKGLKDL-PPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred --------------------hcc-CcccEEEeeCCccchHHHHHHHHHHHhC-CCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 011 3577777777777655555555554322 146777888777777666656655554
Q ss_pred hhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCC
Q psy3611 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 360 (472)
Q Consensus 281 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 360 (472)
. +++|+.|++++|.+.+.+...++..+..+++|++|++++|.+++.+...+...+..+++|++|++++|.
T Consensus 163 ~----------~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 163 A----------NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred h----------CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 4 256788888888887777666777777778888888888888877777788888888888888888888
Q ss_pred CCcccHHHHHHHhcC-CCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcC-CcccEE
Q psy3611 361 ITYKGAIPLGQALSK-LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQI 438 (472)
Q Consensus 361 l~~~~~~~l~~~l~~-~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L 438 (472)
+++.+...+++.+.. .+.|++|++++|.+++.+...+...+..+++|+.+++++|.+++.|...++..+... +.++++
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESL 312 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhc
Confidence 887666565554432 568888888888888777777888888888889999999988888888888888777 788888
Q ss_pred EccCCCC
Q psy3611 439 NVSENQF 445 (472)
Q Consensus 439 ~l~~n~i 445 (472)
++..|++
T Consensus 313 ~~~~~~~ 319 (319)
T cd00116 313 WVKDDSF 319 (319)
T ss_pred ccCCCCC
Confidence 8887754
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=4.1e-28 Score=266.77 Aligned_cols=376 Identities=20% Similarity=0.218 Sum_probs=234.3
Q ss_pred HHHhhhcCCccEEeccCCCcchhhHHHHHHh-hhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccch
Q psy3611 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDA-FEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 81 (472)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~ 81 (472)
+..|..+++|+.|+|++|.+.. .+|.. +..+++|++|++++|.+. +..+. ..+++|++|++++|.+.+
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~----~ip~~~~~~l~~L~~L~Ls~n~l~--~~~p~----~~l~~L~~L~Ls~n~~~~- 154 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSG----PIPDDIFTTSSSLRYLNLSNNNFT--GSIPR----GSIPNLETLDLSNNMLSG- 154 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCC----cCChHHhccCCCCCEEECcCCccc--cccCc----cccCCCCEEECcCCcccc-
Confidence 3456677777777777776653 23433 336677777777777664 33331 345677777777777765
Q ss_pred hHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCC
Q psy3611 82 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 161 (472)
Q Consensus 82 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~ 161 (472)
.++..++.+++|++|++++|.+.. .++..+..+++|++|++++|.+....+..+.. ++.|+.|.+....
T Consensus 155 ---~~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~----l~~L~~L~L~~n~ 223 (968)
T PLN00113 155 ---EIPNDIGSFSSLKVLDLGGNVLVG----KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ----MKSLKWIYLGYNN 223 (968)
T ss_pred ---cCChHHhcCCCCCEEECccCcccc----cCChhhhhCcCCCeeeccCCCCcCcCChHHcC----cCCccEEECcCCc
Confidence 345556667777777777777664 35666667777777777777766554444332 4555554433221
Q ss_pred CCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhh
Q psy3611 162 GECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIG 241 (472)
Q Consensus 162 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 241 (472)
....++. ......+++.+++..- ......+..+..+++|++|++++|.+....
T Consensus 224 --l~~~~p~----------~l~~l~~L~~L~L~~n---------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 224 --LSGEIPY----------EIGGLTSLNHLDLVYN---------------NLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred --cCCcCCh----------hHhcCCCCCEEECcCc---------------eeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 1111111 0111222222222110 011122334455677777777777765443
Q ss_pred HHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCC
Q psy3611 242 VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK 321 (472)
Q Consensus 242 ~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~ 321 (472)
...+.. +++|++|++++|.++..... .+..+++|+.|++++|.+.+. ++..+..++
T Consensus 277 p~~l~~------l~~L~~L~Ls~n~l~~~~p~--------------~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~ 332 (968)
T PLN00113 277 PPSIFS------LQKLISLDLSDNSLSGEIPE--------------LVIQLQNLEILHLFSNNFTGK----IPVALTSLP 332 (968)
T ss_pred chhHhh------ccCcCEEECcCCeeccCCCh--------------hHcCCCCCcEEECCCCccCCc----CChhHhcCC
Confidence 344432 34677777777776532211 123356788888888877653 566677788
Q ss_pred CccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHh
Q psy3611 322 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 401 (472)
Q Consensus 322 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l 401 (472)
+|+.|++++|.+.. .++..+..+++|+.|++++|.+... +++.+...++|+.|++++|.+.+. ++..+
T Consensus 333 ~L~~L~L~~n~l~~----~~p~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~~~~L~~L~l~~n~l~~~----~p~~~ 400 (968)
T PLN00113 333 RLQVLQLWSNKFSG----EIPKNLGKHNNLTVLDLSTNNLTGE----IPEGLCSSGNLFKLILFSNSLEGE----IPKSL 400 (968)
T ss_pred CCCEEECcCCCCcC----cCChHHhCCCCCcEEECCCCeeEee----CChhHhCcCCCCEEECcCCEeccc----CCHHH
Confidence 88888888887752 3455667778888888888877631 335566677888888888887754 56677
Q ss_pred hcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 402 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 402 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
..+++|+.|++++|.+... ++..+..++.|+.|++++|.++.... ..+..+++|+.|+++++
T Consensus 401 ~~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 401 GACRSLRRVRLQDNSFSGE----LPSEFTKLPLVYFLDISNNNLQGRIN----SRKWDMPSLQMLSLARN 462 (968)
T ss_pred hCCCCCCEEECcCCEeeeE----CChhHhcCCCCCEEECcCCcccCccC----hhhccCCCCcEEECcCc
Confidence 7788889999988888764 57777888889999999888765332 23445888999998876
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1.3e-27 Score=262.79 Aligned_cols=378 Identities=21% Similarity=0.266 Sum_probs=232.0
Q ss_pred hHHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccch
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 81 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~ 81 (472)
+++.+.++++|++|++++|.+.. .+|..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.+.+
T Consensus 204 ~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~--~~~p--~~l~~l~~L~~L~L~~n~l~~- 274 (968)
T PLN00113 204 IPRELGQMKSLKWIYLGYNNLSG----EIPYEIGGLTSLNHLDLVYNNLT--GPIP--SSLGNLKNLQYLFLYQNKLSG- 274 (968)
T ss_pred CChHHcCcCCccEEECcCCccCC----cCChhHhcCCCCCEEECcCceec--cccC--hhHhCCCCCCEEECcCCeeec-
Confidence 46778899999999999998875 56777889999999999999875 4555 678899999999999999876
Q ss_pred hHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCC
Q psy3611 82 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 161 (472)
Q Consensus 82 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~ 161 (472)
.++..+..+++|++|++++|.+.. .++..+..+++|+.|++++|.+.+..+..+. .+++|+.|.+....
T Consensus 275 ---~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~l~~L~~L~L~~n~ 343 (968)
T PLN00113 275 ---PIPPSIFSLQKLISLDLSDNSLSG----EIPELVIQLQNLEILHLFSNNFTGKIPVALT----SLPRLQVLQLWSNK 343 (968)
T ss_pred ---cCchhHhhccCcCEEECcCCeecc----CCChhHcCCCCCcEEECCCCccCCcCChhHh----cCCCCCEEECcCCC
Confidence 356667778999999999999886 4677778899999999999988776555443 36667665554321
Q ss_pred CCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhh
Q psy3611 162 GECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIG 241 (472)
Q Consensus 162 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 241 (472)
..+.++. ......+++.++++.-. .....+..+...+.|++|++++|.+....
T Consensus 344 --l~~~~p~----------~l~~~~~L~~L~Ls~n~---------------l~~~~p~~~~~~~~L~~L~l~~n~l~~~~ 396 (968)
T PLN00113 344 --FSGEIPK----------NLGKHNNLTVLDLSTNN---------------LTGEIPEGLCSSGNLFKLILFSNSLEGEI 396 (968)
T ss_pred --CcCcCCh----------HHhCCCCCcEEECCCCe---------------eEeeCChhHhCcCCCCEEECcCCEecccC
Confidence 1112221 01112222222221110 00011112233456666666666664333
Q ss_pred HHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCC
Q psy3611 242 VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK 321 (472)
Q Consensus 242 ~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~ 321 (472)
...+. .+++|+.|++++|.++..... .+..++.|+.|++++|.+.+. ++..+..++
T Consensus 397 p~~~~------~~~~L~~L~L~~n~l~~~~p~--------------~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~ 452 (968)
T PLN00113 397 PKSLG------ACRSLRRVRLQDNSFSGELPS--------------EFTKLPLVYFLDISNNNLQGR----INSRKWDMP 452 (968)
T ss_pred CHHHh------CCCCCCEEECcCCEeeeECCh--------------hHhcCCCCCEEECcCCcccCc----cChhhccCC
Confidence 33332 245666666666665432111 112245666666666666542 344444566
Q ss_pred CccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHh
Q psy3611 322 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 401 (472)
Q Consensus 322 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l 401 (472)
+|+.|++++|++.. .++..+ ..++|+.|++++|.+.. . ++..+..+++|+.|++++|.+.+. ++..+
T Consensus 453 ~L~~L~L~~n~~~~----~~p~~~-~~~~L~~L~ls~n~l~~--~--~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~ 519 (968)
T PLN00113 453 SLQMLSLARNKFFG----GLPDSF-GSKRLENLDLSRNQFSG--A--VPRKLGSLSELMQLKLSENKLSGE----IPDEL 519 (968)
T ss_pred CCcEEECcCceeee----ecCccc-ccccceEEECcCCccCC--c--cChhhhhhhccCEEECcCCcceee----CChHH
Confidence 66666666666541 122222 34566666666666652 1 224455566666777766666543 45555
Q ss_pred hcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 402 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 402 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
..+++|+.|+|++|.++.. ++..+..+++|++|++++|++.... ...+..++.|+.|++++|
T Consensus 520 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 520 SSCKKLVSLDLSHNQLSGQ----IPASFSEMPVLSQLDLSQNQLSGEI----PKNLGNVESLVQVNISHN 581 (968)
T ss_pred cCccCCCEEECCCCccccc----CChhHhCcccCCEEECCCCcccccC----ChhHhcCcccCEEeccCC
Confidence 6666677777776666543 4556666666777777766665432 233444666666666665
No 6
>KOG1909|consensus
Probab=99.93 E-value=3.1e-24 Score=193.65 Aligned_cols=346 Identities=25% Similarity=0.363 Sum_probs=176.5
Q ss_pred HHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCcc---ccc---hhHHHHHHHhhcCCcccEEECcC
Q psy3611 30 LSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL---LKS---AGASSIAKYLTDNTTLEDVNLTC 103 (472)
Q Consensus 30 l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~---l~~---~~~~~l~~~l~~~~~L~~L~l~~ 103 (472)
+...+.....++.+++++|.++......++..+++.+.|+..++++-- ..+ ..+..+.+.+..+++|++|+||.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 334444455566666666666555555555666666666666665431 111 11222233333444566666666
Q ss_pred CccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCcccc
Q psy3611 104 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEG 183 (472)
Q Consensus 104 ~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 183 (472)
|-+...+...+.+.++++..|++|.|.+|.+++.+...++..+..+... .
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~-----k------------------------- 151 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVN-----K------------------------- 151 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHH-----h-------------------------
Confidence 6666555555555555566666666666666555555555543332110 0
Q ss_pred CCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEee
Q psy3611 184 DNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLN 263 (472)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~ 263 (472)
-....+.|+.+...+|.+.+.+...++..++.. +.|+++.+.
T Consensus 152 ------------------------------------k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~--~~leevr~~ 193 (382)
T KOG1909|consen 152 ------------------------------------KAASKPKLRVFICGRNRLENGGATALAEAFQSH--PTLEEVRLS 193 (382)
T ss_pred ------------------------------------ccCCCcceEEEEeeccccccccHHHHHHHHHhc--cccceEEEe
Confidence 011124555555555555555555555555432 455555555
Q ss_pred CCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHH
Q psy3611 264 NNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343 (472)
Q Consensus 264 ~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 343 (472)
.|.|...+...++.++..+ ++|+.||+..|.++..|...+...+..++.|+.|++++|.+...|...+.+
T Consensus 194 qN~I~~eG~~al~eal~~~----------~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 194 QNGIRPEGVTALAEALEHC----------PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred cccccCchhHHHHHHHHhC----------CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 5555555555555555543 455555555555555555555555555555555555555555555555555
Q ss_pred HHhc-CCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCC--ChHHHHHHHHHhhcC-CCCCEEECcCCCCCc
Q psy3611 344 AFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL--KSAGASSIAKYLTDN-TTLEDVNLTCNEISV 419 (472)
Q Consensus 344 ~l~~-~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i--~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~ 419 (472)
++.. .|.|+.|.+.+|.|+.++...+...+...|.|+.|++++|.+ .++++..+...+..- ..+...+.+.+.+.+
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~~~~~~~~~~~~s~e~l~~ 343 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFDTAHVLLEDIDDSEEELER 343 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcccccccchhhchhHHHHHh
Confidence 4442 355555555555555555544444444455555555555555 444444444433211 223333444445555
Q ss_pred hhHHHHHHHHhcCCcccEEEccCCCCChhHHHHH
Q psy3611 420 QGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEM 453 (472)
Q Consensus 420 ~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 453 (472)
+|............+-+.++++++.+...+...+
T Consensus 344 eg~e~e~~~~~~~~t~~e~~ed~e~ie~e~~ee~ 377 (382)
T KOG1909|consen 344 EGEEDEEEEVEKKETFKELNEDGEVIEEEGIEEL 377 (382)
T ss_pred hhhhHHHHHHHhcCcchhhcccccccchhHHHHh
Confidence 5555444444444455555555555544444433
No 7
>KOG4194|consensus
Probab=99.91 E-value=2.4e-26 Score=219.23 Aligned_cols=196 Identities=19% Similarity=0.214 Sum_probs=124.0
Q ss_pred hhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEc
Q psy3611 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300 (472)
Q Consensus 221 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l 300 (472)
+.++++|+.|.+..|.+..-....| ..|.++++|+|..|++.... ..++.+++.|+.|++
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~F------y~l~kme~l~L~~N~l~~vn--------------~g~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAF------YGLEKMEHLNLETNRLQAVN--------------EGWLFGLTSLEQLDL 300 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcce------eeecccceeecccchhhhhh--------------cccccccchhhhhcc
Confidence 3445666666666666633222222 12346777777777764221 134455677888888
Q ss_pred CCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHH-HHhcCCCCC
Q psy3611 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG-QALSKLPSL 379 (472)
Q Consensus 301 ~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~-~~l~~~~~L 379 (472)
|.|.+..- -+..++.+++|+.|++++|+|+.-. ...|..+..|++|++++|.++. ++ .++...++|
T Consensus 301 S~NaI~ri----h~d~WsftqkL~~LdLs~N~i~~l~----~~sf~~L~~Le~LnLs~Nsi~~-----l~e~af~~lssL 367 (873)
T KOG4194|consen 301 SYNAIQRI----HIDSWSFTQKLKELDLSSNRITRLD----EGSFRVLSQLEELNLSHNSIDH-----LAEGAFVGLSSL 367 (873)
T ss_pred chhhhhee----ecchhhhcccceeEeccccccccCC----hhHHHHHHHhhhhcccccchHH-----HHhhHHHHhhhh
Confidence 88877752 3445667888888888888876322 3455566778888888887762 22 245667788
Q ss_pred cEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHH
Q psy3611 380 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 454 (472)
Q Consensus 380 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~ 454 (472)
+.|||..|.+... +..-+.++..++.|+.|++.||++... --.++..++.|++|++.+|.|-......+.
T Consensus 368 ~~LdLr~N~ls~~-IEDaa~~f~gl~~LrkL~l~gNqlk~I----~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 368 HKLDLRSNELSWC-IEDAAVAFNGLPSLRKLRLTGNQLKSI----PKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred hhhcCcCCeEEEE-EecchhhhccchhhhheeecCceeeec----chhhhccCcccceecCCCCcceeecccccc
Confidence 8888888876421 111234556678888888888887763 234677778888888888877655444443
No 8
>KOG4194|consensus
Probab=99.91 E-value=8.1e-26 Score=215.68 Aligned_cols=370 Identities=21% Similarity=0.255 Sum_probs=241.1
Q ss_pred HHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
+.|.++++|+.++|.+|.++ .+|.+.....+|+.|+|.+|.|+.... +.+..++.|++||||.|.|+....
T Consensus 96 ~~f~nl~nLq~v~l~~N~Lt-----~IP~f~~~sghl~~L~L~~N~I~sv~s----e~L~~l~alrslDLSrN~is~i~~ 166 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNELT-----RIPRFGHESGHLEKLDLRHNLISSVTS----EELSALPALRSLDLSRNLISEIPK 166 (873)
T ss_pred HHHhcCCcceeeeeccchhh-----hcccccccccceeEEeeeccccccccH----HHHHhHhhhhhhhhhhchhhcccC
Confidence 45667777777777777766 466666666667777777777754433 345556677777777776664321
Q ss_pred HHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCC
Q psy3611 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 163 (472)
Q Consensus 84 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~ 163 (472)
..+ ..-.++++|+|++|.|+..+. ..+....+|.+|.|+.|.++.-.+..+ +.++.|+.|.++...-+
T Consensus 167 ~sf----p~~~ni~~L~La~N~It~l~~----~~F~~lnsL~tlkLsrNrittLp~r~F----k~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 167 PSF----PAKVNIKKLNLASNRITTLET----GHFDSLNSLLTLKLSRNRITTLPQRSF----KRLPKLESLDLNRNRIR 234 (873)
T ss_pred CCC----CCCCCceEEeecccccccccc----ccccccchheeeecccCcccccCHHHh----hhcchhhhhhcccccee
Confidence 122 223567777777777775332 233444577777777777764433322 23555655554432211
Q ss_pred CCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHH
Q psy3611 164 CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243 (472)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 243 (472)
.... +. |..-.++.+-+.....+..+..+++-.+.++++|+|+.|.++...-.
T Consensus 235 ive~--------------------lt-------FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 235 IVEG--------------------LT-------FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred eehh--------------------hh-------hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence 1100 00 00111222333334455566667777889999999999998655444
Q ss_pred HHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCc
Q psy3611 244 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL 323 (472)
Q Consensus 244 ~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L 323 (472)
++.. ++.|+.|++++|.|.-.-.. .+.-+++|+.|+|+.|+++.- =+..|..+..|
T Consensus 288 ~lfg------Lt~L~~L~lS~NaI~rih~d--------------~WsftqkL~~LdLs~N~i~~l----~~~sf~~L~~L 343 (873)
T KOG4194|consen 288 WLFG------LTSLEQLDLSYNAIQRIHID--------------SWSFTQKLKELDLSSNRITRL----DEGSFRVLSQL 343 (873)
T ss_pred cccc------cchhhhhccchhhhheeecc--------------hhhhcccceeEeccccccccC----ChhHHHHHHHh
Confidence 4432 46899999999997532222 233367899999999999863 23466678899
Q ss_pred cEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhc
Q psy3611 324 ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403 (472)
Q Consensus 324 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~ 403 (472)
++|++++|.++... .-+|.++++|++||+++|.+...- .--+..+.++++|+.|++.+|+++.. -..+++.
T Consensus 344 e~LnLs~Nsi~~l~----e~af~~lssL~~LdLr~N~ls~~I-EDaa~~f~gl~~LrkL~l~gNqlk~I----~krAfsg 414 (873)
T KOG4194|consen 344 EELNLSHNSIDHLA----EGAFVGLSSLHKLDLRSNELSWCI-EDAAVAFNGLPSLRKLRLTGNQLKSI----PKRAFSG 414 (873)
T ss_pred hhhcccccchHHHH----hhHHHHhhhhhhhcCcCCeEEEEE-ecchhhhccchhhhheeecCceeeec----chhhhcc
Confidence 99999999987322 236778899999999999876311 11225677899999999999999873 2368899
Q ss_pred CCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC-CChhHHHHHHHHHHh
Q psy3611 404 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ-FGEEGVEEMEKLMKS 459 (472)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~~l~~ 459 (472)
+..|+.|+|.+|.|... =+.++..+ .|++|.+..-. +-+=.+..+.+++..
T Consensus 415 l~~LE~LdL~~NaiaSI----q~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~ 466 (873)
T KOG4194|consen 415 LEALEHLDLGDNAIASI----QPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYR 466 (873)
T ss_pred CcccceecCCCCcceee----cccccccc-hhhhhhhcccceEEeccHHHHHHHHHh
Confidence 99999999999988774 36677776 88888876544 333344566666653
No 9
>KOG0444|consensus
Probab=99.88 E-value=1.3e-24 Score=209.08 Aligned_cols=349 Identities=19% Similarity=0.238 Sum_probs=238.9
Q ss_pred hHHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccch
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 81 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~ 81 (472)
+|.....++.++.|.|..-.+. .+|+-+..+.+|++|.+.+|.+. .+. --+..+|.|+.+.+..|.+.+.
T Consensus 24 FP~~v~qMt~~~WLkLnrt~L~-----~vPeEL~~lqkLEHLs~~HN~L~---~vh--GELs~Lp~LRsv~~R~N~LKns 93 (1255)
T KOG0444|consen 24 FPHDVEQMTQMTWLKLNRTKLE-----QVPEELSRLQKLEHLSMAHNQLI---SVH--GELSDLPRLRSVIVRDNNLKNS 93 (1255)
T ss_pred CchhHHHhhheeEEEechhhhh-----hChHHHHHHhhhhhhhhhhhhhH---hhh--hhhccchhhHHHhhhccccccC
Confidence 3555666777777766554433 67888888888888888888753 222 3456778888888888888777
Q ss_pred hHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCC
Q psy3611 82 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 161 (472)
Q Consensus 82 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~ 161 (472)
| +|.-+..+..|..|||+.|.+. ++|..+..-+++-+|++++|+|... |..++-. +..|..|.+..
T Consensus 94 G---iP~diF~l~dLt~lDLShNqL~-----EvP~~LE~AKn~iVLNLS~N~IetI-Pn~lfin---LtDLLfLDLS~-- 159 (1255)
T KOG0444|consen 94 G---IPTDIFRLKDLTILDLSHNQLR-----EVPTNLEYAKNSIVLNLSYNNIETI-PNSLFIN---LTDLLFLDLSN-- 159 (1255)
T ss_pred C---CCchhcccccceeeecchhhhh-----hcchhhhhhcCcEEEEcccCccccC-CchHHHh---hHhHhhhcccc--
Confidence 4 6777778888889999988887 4788888888888899998887532 3322221 22222222211
Q ss_pred CCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhh
Q psy3611 162 GECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIG 241 (472)
Q Consensus 162 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 241 (472)
+ ....+.++ ++.+..|+.|.+++|.+...-
T Consensus 160 N-------------------------------------------------rLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 160 N-------------------------------------------------RLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred c-------------------------------------------------hhhhcCHH-HHHHhhhhhhhcCCChhhHHH
Confidence 1 11112222 345678889999998874332
Q ss_pred HHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCC
Q psy3611 242 VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK 321 (472)
Q Consensus 242 ~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~ 321 (472)
+..+ +.+++|.+|++++..=| ... ++..+-.+.+|..+|+|.|.+.. +|+.+-..+
T Consensus 190 LrQL------PsmtsL~vLhms~TqRT---l~N----------~Ptsld~l~NL~dvDlS~N~Lp~-----vPecly~l~ 245 (1255)
T KOG0444|consen 190 LRQL------PSMTSLSVLHMSNTQRT---LDN----------IPTSLDDLHNLRDVDLSENNLPI-----VPECLYKLR 245 (1255)
T ss_pred HhcC------ccchhhhhhhcccccch---hhc----------CCCchhhhhhhhhccccccCCCc-----chHHHhhhh
Confidence 2222 33457778888775422 112 22333334678899999998884 888888899
Q ss_pred CccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHh
Q psy3611 322 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 401 (472)
Q Consensus 322 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l 401 (472)
+|+.|++++|+|+. +......+.+|++|++++|+++ .+++++.+++.|+.|.+.+|.++-+| +|..+
T Consensus 246 ~LrrLNLS~N~ite-----L~~~~~~W~~lEtLNlSrNQLt-----~LP~avcKL~kL~kLy~n~NkL~FeG---iPSGI 312 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITE-----LNMTEGEWENLETLNLSRNQLT-----VLPDAVCKLTKLTKLYANNNKLTFEG---IPSGI 312 (1255)
T ss_pred hhheeccCcCceee-----eeccHHHHhhhhhhccccchhc-----cchHHHhhhHHHHHHHhccCcccccC---Cccch
Confidence 99999999999873 3334445678899999999887 37788888899999999888887666 67777
Q ss_pred hcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 402 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 402 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+++.+|+.+...+|.+.- .|+++..|..|+.|.++.|.+- .+++++--++.|..||+..|
T Consensus 313 GKL~~Levf~aanN~LEl-----VPEglcRC~kL~kL~L~~NrLi-----TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNKLEL-----VPEGLCRCVKLQKLKLDHNRLI-----TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred hhhhhhHHHHhhcccccc-----CchhhhhhHHHHHhccccccee-----echhhhhhcCCcceeeccCC
Confidence 777788888888777765 5777777888888888877742 13444444677777777654
No 10
>KOG0444|consensus
Probab=99.85 E-value=2.6e-23 Score=200.17 Aligned_cols=326 Identities=22% Similarity=0.345 Sum_probs=179.6
Q ss_pred ChHHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccc
Q psy3611 1 MLAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80 (472)
Q Consensus 1 ~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~ 80 (472)
|+|+-+++|.+|++|.+.+|++. .+..-++.+|.|+.+++..|.+...|. | ..+.++.-|+.||||.|.+..
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~-----~vhGELs~Lp~LRsv~~R~N~LKnsGi-P--~diF~l~dLt~lDLShNqL~E 117 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLI-----SVHGELSDLPRLRSVIVRDNNLKNSGI-P--TDIFRLKDLTILDLSHNQLRE 117 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhH-----hhhhhhccchhhHHHhhhccccccCCC-C--chhcccccceeeecchhhhhh
Confidence 57888899999999999999776 355567777888888888887765554 3 345667788888888887763
Q ss_pred hhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHh-hhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhcc
Q psy3611 81 AGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM-KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 159 (472)
Q Consensus 81 ~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l-~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~ 159 (472)
.|..+.+.+++-.|+|++|+|.. +|..+ -++.-|-.||+++|.+..- |.. ++.+..|++|.+..
T Consensus 118 -----vP~~LE~AKn~iVLNLS~N~Iet-----IPn~lfinLtDLLfLDLS~NrLe~L-PPQ----~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 118 -----VPTNLEYAKNSIVLNLSYNNIET-----IPNSLFINLTDLLFLDLSNNRLEML-PPQ----IRRLSMLQTLKLSN 182 (1255)
T ss_pred -----cchhhhhhcCcEEEEcccCcccc-----CCchHHHhhHhHhhhccccchhhhc-CHH----HHHHhhhhhhhcCC
Confidence 56666667778888888887763 44333 3445566667777755321 111 22233333333322
Q ss_pred CCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCCh
Q psy3611 160 DEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGP 239 (472)
Q Consensus 160 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 239 (472)
..-. .....-+..+++|+.|.+++.+-+-
T Consensus 183 NPL~---------------------------------------------------hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 183 NPLN---------------------------------------------------HFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred Chhh---------------------------------------------------HHHHhcCccchhhhhhhcccccchh
Confidence 1000 0000000112334444444433211
Q ss_pred hhH-HHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHh
Q psy3611 240 IGV-EGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFK 318 (472)
Q Consensus 240 ~~~-~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 318 (472)
... .++.++ .+|+.++++.|.++. ++..+.+ +++|+.|++|+|.++. +.....
T Consensus 212 ~N~Ptsld~l------~NL~dvDlS~N~Lp~-----vPecly~----------l~~LrrLNLS~N~ite-----L~~~~~ 265 (1255)
T KOG0444|consen 212 DNIPTSLDDL------HNLRDVDLSENNLPI-----VPECLYK----------LRNLRRLNLSGNKITE-----LNMTEG 265 (1255)
T ss_pred hcCCCchhhh------hhhhhccccccCCCc-----chHHHhh----------hhhhheeccCcCceee-----eeccHH
Confidence 111 111111 255556666555541 1122221 2455666666665553 333333
Q ss_pred cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHH
Q psy3611 319 KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 398 (472)
Q Consensus 319 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 398 (472)
...+|+.|++++|+++ .++.++..++.|++|.+.+|+++-+| ++..++++..|+.+..++|.+.- +|
T Consensus 266 ~W~~lEtLNlSrNQLt-----~LP~avcKL~kL~kLy~n~NkL~FeG---iPSGIGKL~~Levf~aanN~LEl-----VP 332 (1255)
T KOG0444|consen 266 EWENLETLNLSRNQLT-----VLPDAVCKLTKLTKLYANNNKLTFEG---IPSGIGKLIQLEVFHAANNKLEL-----VP 332 (1255)
T ss_pred HHhhhhhhccccchhc-----cchHHHhhhHHHHHHHhccCcccccC---CccchhhhhhhHHHHhhcccccc-----Cc
Confidence 4445666666666655 45556666666666666666655444 23455555566666666555532 45
Q ss_pred HHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC
Q psy3611 399 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444 (472)
Q Consensus 399 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 444 (472)
..++.|..|+.|.|+.|++-+ +|+++.-++.|+.|++..|+
T Consensus 333 EglcRC~kL~kL~L~~NrLiT-----LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDHNRLIT-----LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhhhHHHHHhcccccceee-----chhhhhhcCCcceeeccCCc
Confidence 555666666666666665444 56666666666666666654
No 11
>KOG0618|consensus
Probab=99.82 E-value=1.9e-21 Score=195.24 Aligned_cols=397 Identities=20% Similarity=0.190 Sum_probs=222.5
Q ss_pred HhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHH
Q psy3611 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 84 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~ 84 (472)
+.+++-+|+.|+|++|.+.. +|..+...++|+.|+++.|.+ ...| ....++++|++++|.+|.+.
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~-----fp~~it~l~~L~~ln~s~n~i---~~vp--~s~~~~~~l~~lnL~~n~l~----- 104 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISS-----FPIQITLLSHLRQLNLSRNYI---RSVP--SSCSNMRNLQYLNLKNNRLQ----- 104 (1081)
T ss_pred HhhheeeeEEeecccccccc-----CCchhhhHHHHhhcccchhhH---hhCc--hhhhhhhcchhheeccchhh-----
Confidence 44455567788887777663 455566667777788877776 3344 34667777888888777665
Q ss_pred HHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC-cCChhhHHHHHHHHHhchhhHHhhhccCCCC
Q psy3611 85 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN-QFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 163 (472)
Q Consensus 85 ~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~ 163 (472)
.+|..+..+++|++|+++.|.++. +|.-+..+.....+..++| .+.. +.+. ..+...+..+...+.
T Consensus 105 ~lP~~~~~lknl~~LdlS~N~f~~-----~Pl~i~~lt~~~~~~~s~N~~~~~-----lg~~---~ik~~~l~~n~l~~~ 171 (1081)
T KOG0618|consen 105 SLPASISELKNLQYLDLSFNHFGP-----IPLVIEVLTAEEELAASNNEKIQR-----LGQT---SIKKLDLRLNVLGGS 171 (1081)
T ss_pred cCchhHHhhhcccccccchhccCC-----CchhHHhhhHHHHHhhhcchhhhh-----hccc---cchhhhhhhhhcccc
Confidence 466677777788888888777764 3333444444444444444 1100 0000 001111222222222
Q ss_pred CCccccchhh-hcc---cCC-cccc----------CCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCccc
Q psy3611 164 CSDEEQDEES-EEE---NDS-DAEG----------DNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLV 228 (472)
Q Consensus 164 ~~~~i~~~~~-~~~---~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 228 (472)
+..++..... .+. ... .... ....+.+++...+.....-.-.+... .......+.+|+
T Consensus 172 ~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~-------~~~~~p~p~nl~ 244 (1081)
T KOG0618|consen 172 FLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT-------TLDVHPVPLNLQ 244 (1081)
T ss_pred hhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce-------eeccccccccce
Confidence 2222211111 000 000 0000 00111111111111100000001100 111122347899
Q ss_pred EEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCCh--------hHHHHHHHHHHhhcccCcCCCCCcceeEEEc
Q psy3611 229 ELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGI--------TGCKLLSKALHDCYESSKKEGSPLALKVFIA 300 (472)
Q Consensus 229 ~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~--------~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l 300 (472)
+++++.+.++... +++.. |++|+.++..+|+++. ..+..+.-+..+...+++......+|++|++
T Consensus 245 ~~dis~n~l~~lp-~wi~~------~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 245 YLDISHNNLSNLP-EWIGA------CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred eeecchhhhhcch-HHHHh------cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 9999999886665 55543 6799999999999752 2223444455555666777777889999999
Q ss_pred CCCCCChhhHHHHHHHHh--------------------------cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEE
Q psy3611 301 GRNRLENEGAKMLAAVFK--------------------------KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHL 354 (472)
Q Consensus 301 ~~~~l~~~~~~~l~~~~~--------------------------~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L 354 (472)
..|.+.. +|..+. ....|+.|.+.+|.+++.. ...+.+.++|+.|
T Consensus 318 ~~N~L~~-----lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c----~p~l~~~~hLKVL 388 (1081)
T KOG0618|consen 318 QSNNLPS-----LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC----FPVLVNFKHLKVL 388 (1081)
T ss_pred hhccccc-----cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc----hhhhccccceeee
Confidence 9998764 222110 1124555666677777654 3456677888888
Q ss_pred EccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCc
Q psy3611 355 NLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTK 434 (472)
Q Consensus 355 ~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 434 (472)
+|++|.+..--. ..+.+++.|++|+++||.++. ++.....++.|+.|...+|.+.. +| .+.+.+.
T Consensus 389 hLsyNrL~~fpa----s~~~kle~LeeL~LSGNkL~~-----Lp~tva~~~~L~tL~ahsN~l~~-----fP-e~~~l~q 453 (1081)
T KOG0618|consen 389 HLSYNRLNSFPA----SKLRKLEELEELNLSGNKLTT-----LPDTVANLGRLHTLRAHSNQLLS-----FP-ELAQLPQ 453 (1081)
T ss_pred eecccccccCCH----HHHhchHHhHHHhcccchhhh-----hhHHHHhhhhhHHHhhcCCceee-----ch-hhhhcCc
Confidence 888887762111 456677788888888888876 66666666777777777776665 45 5566677
Q ss_pred ccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 435 LKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 435 L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
|+.+|++.|.++......-. + -|+|++||+++|
T Consensus 454 L~~lDlS~N~L~~~~l~~~~---p-~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 454 LKVLDLSCNNLSEVTLPEAL---P-SPNLKYLDLSGN 486 (1081)
T ss_pred ceEEecccchhhhhhhhhhC---C-CcccceeeccCC
Confidence 77777777776654333222 1 167777777765
No 12
>KOG0472|consensus
Probab=99.79 E-value=8.1e-21 Score=174.24 Aligned_cols=341 Identities=22% Similarity=0.279 Sum_probs=226.6
Q ss_pred hHHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccch
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 81 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~ 81 (472)
+|+-++.+..|+.|+|+.|.+. .+| .|.+|..|+++.++.|.+ ..++. +....++++.+||++.|+++.
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-----~lP-ef~gcs~L~Elh~g~N~i---~~lpa-e~~~~L~~l~vLDLRdNklke- 266 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-----FLP-EFPGCSLLKELHVGENQI---EMLPA-EHLKHLNSLLVLDLRDNKLKE- 266 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-----cCC-CCCccHHHHHHHhcccHH---HhhHH-HHhcccccceeeecccccccc-
Confidence 3455666777777777777776 355 577788888888888877 55553 566788999999999999984
Q ss_pred hHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchh---hHHhhhc
Q psy3611 82 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM---AAALVLE 158 (472)
Q Consensus 82 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~---l~~L~~~ 158 (472)
.|+.+.-+++|++||+++|.++. ++..++++ +|+.|-+.||.+.. +.+-+-..+. +++|.-.
T Consensus 267 ----~Pde~clLrsL~rLDlSNN~is~-----Lp~sLgnl-hL~~L~leGNPlrT-----iRr~ii~~gT~~vLKyLrs~ 331 (565)
T KOG0472|consen 267 ----VPDEICLLRSLERLDLSNNDISS-----LPYSLGNL-HLKFLALEGNPLRT-----IRREIISKGTQEVLKYLRSK 331 (565)
T ss_pred ----CchHHHHhhhhhhhcccCCcccc-----CCcccccc-eeeehhhcCCchHH-----HHHHHHcccHHHHHHHHHHh
Confidence 56666778999999999999995 88899988 99999999997642 1111111111 1222210
Q ss_pred cCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCC
Q psy3611 159 DDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFG 238 (472)
Q Consensus 159 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 238 (472)
.... ++.. -+.....+.+...+.+.+ .......+.|++++-.++
T Consensus 332 ~~~d----glS~----se~~~e~~~t~~~~~~~~----------------------------~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 332 IKDD----GLSQ----SEGGTETAMTLPSESFPD----------------------------IYAIITTKILDVSDKQLT 375 (565)
T ss_pred hccC----CCCC----CcccccccCCCCCCcccc----------------------------hhhhhhhhhhcccccccc
Confidence 0000 0000 000000000000000000 001146677888888887
Q ss_pred hhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHh
Q psy3611 239 PIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFK 318 (472)
Q Consensus 239 ~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 318 (472)
....+-|... + -.-+..++++.|++.. +++.+.... .-++.++++.|.++ +.+..++
T Consensus 376 ~VPdEVfea~-~---~~~Vt~VnfskNqL~e-----lPk~L~~lk---------elvT~l~lsnn~is-----fv~~~l~ 432 (565)
T KOG0472|consen 376 LVPDEVFEAA-K---SEIVTSVNFSKNQLCE-----LPKRLVELK---------ELVTDLVLSNNKIS-----FVPLELS 432 (565)
T ss_pred cCCHHHHHHh-h---hcceEEEecccchHhh-----hhhhhHHHH---------HHHHHHHhhcCccc-----cchHHHH
Confidence 7766555432 1 1137888999988642 222221111 12455667777776 4677888
Q ss_pred cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHH
Q psy3611 319 KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 398 (472)
Q Consensus 319 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 398 (472)
++++|..|++++|.+. .++..+++...|+.|++++|.+. .+++.+-....++.+-.++|.++... +
T Consensus 433 ~l~kLt~L~L~NN~Ln-----~LP~e~~~lv~Lq~LnlS~NrFr-----~lP~~~y~lq~lEtllas~nqi~~vd----~ 498 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLN-----DLPEEMGSLVRLQTLNLSFNRFR-----MLPECLYELQTLETLLASNNQIGSVD----P 498 (565)
T ss_pred hhhcceeeecccchhh-----hcchhhhhhhhhheecccccccc-----cchHHHhhHHHHHHHHhccccccccC----h
Confidence 9999999999999887 56777778888999999999886 24455545556677777778887642 2
Q ss_pred HHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 399 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 399 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
..+..+.+|..||+.+|.+.. +|..++++++|++|.++||+|.
T Consensus 499 ~~l~nm~nL~tLDL~nNdlq~-----IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDLQQ-----IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhhhhhcceeccCCCchhh-----CChhhccccceeEEEecCCccC
Confidence 346778999999999999887 7999999999999999999985
No 13
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.78 E-value=5.8e-18 Score=148.06 Aligned_cols=225 Identities=36% Similarity=0.418 Sum_probs=182.4
Q ss_pred hhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEc
Q psy3611 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300 (472)
Q Consensus 221 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l 300 (472)
+-.|++|+.++++.|.++....+.+.++++.. +.|+.|.+++|.+++.+...+++++...... ++...-|.|+.+..
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~--t~l~HL~l~NnGlGp~aG~rigkal~~la~n-KKaa~kp~Le~vic 164 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSS--TDLVHLKLNNNGLGPIAGGRIGKALFHLAYN-KKAADKPKLEVVIC 164 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcC--CCceeEEeecCCCCccchhHHHHHHHHHHHH-hhhccCCCceEEEe
Confidence 45689999999999999999999999998755 5899999999999998888888776655432 33445578999999
Q ss_pred CCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHH-HHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCC
Q psy3611 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSL 379 (472)
Q Consensus 301 ~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L 379 (472)
..|++...........+..-.+|+.+.+..|.|..+|+..+. ..+..+.+|+.||+.+|.++..|...++.+++.++.|
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 999998766665555555556999999999999999987764 4566788999999999999999999999999999999
Q ss_pred cEEEcCCCCCChHHHHHHHHHhh--cCCCCCEEECcCCCCCchhHHH--HHHHH-hcCCcccEEEccCCCCChh
Q psy3611 380 AILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLD--LVKAM-KNKTKLKQINVSENQFGEE 448 (472)
Q Consensus 380 ~~L~l~~~~i~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~--l~~~l-~~~~~L~~L~l~~n~i~~~ 448 (472)
+.|.++.|-++..|+..+...+. ..++|..|...+|.+....+.. +.... ...|-|..|.+.+|.+...
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 99999999999999988887765 4589999999999765443322 33333 2566788888899988653
No 14
>KOG4308|consensus
Probab=99.76 E-value=1.8e-18 Score=170.84 Aligned_cols=373 Identities=26% Similarity=0.332 Sum_probs=241.1
Q ss_pred CCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcC-CcccEEECcCCccCcchHHHHHHHh
Q psy3611 40 LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAM 118 (472)
Q Consensus 40 L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~-~~L~~L~l~~~~i~~~~~~~l~~~l 118 (472)
+.++++.+|.+.+.+...++.++..+++|..|++++|.+++++...+++.+... ..+++|.+..|.++..|...+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 555566666655555555555556666666666666666665555555555554 4555555556666665555566655
Q ss_pred hhCCCccEEEecCCcCChhhHHHHHHHHHh----chhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCC
Q psy3611 119 KNKTKLKQINVSENQFGEEGVEEMEKLMKS----FGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSN 194 (472)
Q Consensus 119 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~----~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (472)
..+..++.++++.|.+...+...+...++. ...++.|....+.-.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t------------------------------- 217 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT------------------------------- 217 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC-------------------------------
Confidence 555566666666655554444444444432 222233322221100
Q ss_pred CcccccccccCCCCcccccchhhhhhhhcCCc-ccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHH
Q psy3611 195 HSHNASNQSHNNSNQSHNTSNQSHMSLKTGAR-LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCK 273 (472)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~ 273 (472)
...+..+. ..+...+. +.++++..|.+.+.++..+...+.... +.+++++++.|.+++.+..
T Consensus 218 ---------------~~~c~~l~-~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~-~~l~~l~l~~nsi~~~~~~ 280 (478)
T KOG4308|consen 218 ---------------SSSCALLD-EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLS-ETLRVLDLSRNSITEKGVR 280 (478)
T ss_pred ---------------hHHHHHHH-HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccc-hhhhhhhhhcCCccccchH
Confidence 00000111 11122233 666888888888778888887776554 3678888888888888888
Q ss_pred HHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHH-HHHHHHHhcCCCcc
Q psy3611 274 LLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGI-TALSDAFEENKNLR 352 (472)
Q Consensus 274 ~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~l~~~~~L~ 352 (472)
.+++.+..+ +.++.+.++.|.+.+.+...+.+.......+.++.+.++.....+. ..++........+.
T Consensus 281 ~L~~~l~~~----------~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (478)
T KOG4308|consen 281 DLAEVLVSC----------RQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLS 350 (478)
T ss_pred HHHHHHhhh----------HHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhH
Confidence 888877664 5788888888888888877777777777777777777655443332 23333333333445
Q ss_pred EEEccCCCCCcccHHHHHHHhcCCCC-CcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhc
Q psy3611 353 HLNLNDNTITYKGAIPLGQALSKLPS-LAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 431 (472)
Q Consensus 353 ~L~l~~n~l~~~~~~~l~~~l~~~~~-L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 431 (472)
...++++...+++...+.......+. +..+++..+.+...+...++..+..+..++.++++.|...++++..+......
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~ 430 (478)
T KOG4308|consen 351 ELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSR 430 (478)
T ss_pred HHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhh
Confidence 55666666666666555555555444 78888888888888887788888888999999999998888888888887776
Q ss_pred CCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCC
Q psy3611 432 KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 470 (472)
Q Consensus 432 ~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 470 (472)
+..++.+.++.|+++..+.....+.....+.........
T Consensus 431 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (478)
T KOG4308|consen 431 NGSLKALRLSRNPITALGTEELQRALALNPGILAIRLRG 469 (478)
T ss_pred cccchhhhhccChhhhcchHHHHHHHhcCCCcceeeccc
Confidence 668999999999998888888888888788777665543
No 15
>KOG0472|consensus
Probab=99.71 E-value=4.2e-19 Score=163.06 Aligned_cols=91 Identities=20% Similarity=0.343 Sum_probs=55.7
Q ss_pred HHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCch------------------hHHHH-HHHHhc
Q psy3611 371 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ------------------GGLDL-VKAMKN 431 (472)
Q Consensus 371 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~------------------~~~~l-~~~l~~ 431 (472)
..++..++|..|++++|.+.+ +|..++..-.|+.++++.|++..- .++++ +.++.+
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln~-----LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLND-----LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred HHHHhhhcceeeecccchhhh-----cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 344455555566665555544 455555555555555555544320 00012 345777
Q ss_pred CCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 432 KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 432 ~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+.+|..||+.+|.+ +.++..+..+++|++|++++|
T Consensus 504 m~nL~tLDL~nNdl-----q~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDL-----QQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred hhhcceeccCCCch-----hhCChhhccccceeEEEecCC
Confidence 88888899988765 456667778999999999876
No 16
>KOG4308|consensus
Probab=99.70 E-value=5.8e-17 Score=160.24 Aligned_cols=377 Identities=27% Similarity=0.343 Sum_probs=297.1
Q ss_pred ccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccC-CCCcEEeccCccccchhHHHHHHHh
Q psy3611 12 LEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL-PSLAILNLGDCLLKSAGASSIAKYL 90 (472)
Q Consensus 12 L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~-~~L~~L~ls~~~l~~~~~~~l~~~l 90 (472)
+..+.|.+|.+.+.+...+...+..+++|..|++++|.+++.+...++..+... ..+++|++..|.+++++...++..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 778899999999999999999999999999999999999988888888888776 7888899999999999999999999
Q ss_pred hcCCcccEEECcCCccCcchHHHHHHHhhh----CCCccEEEecCCcCChhhHHHHHHHHHhchh-hHHhhhccCCCCCC
Q psy3611 91 TDNTTLEDVNLTCNEISVQGGLDLVKAMKN----KTKLKQINVSENQFGEEGVEEMEKLMKSFGM-AAALVLEDDEGECS 165 (472)
Q Consensus 91 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~----~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~-l~~L~~~~~~~~~~ 165 (472)
..+..++.++++.|.+...|...++..+.. ..++++|.+++|.++......+...+...+. +..+..... ...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n--~l~ 246 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN--KLG 246 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc--Ccc
Confidence 888999999999999888887778877775 6689999999999988877777777776666 333333221 111
Q ss_pred ccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcC-CcccEEeCCCCCCChhhHHH
Q psy3611 166 DEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTG-ARLVELDLSDNAFGPIGVEG 244 (472)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~ 244 (472)
+. .+..+ ...+..+ +.++.+++..|.+++.+...
T Consensus 247 d~--------------------------------------------g~~~L-~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 247 DV--------------------------------------------GVEKL-LPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred hH--------------------------------------------HHHHH-HHHhcccchhhhhhhhhcCCccccchHH
Confidence 11 11111 1222333 68899999999999999999
Q ss_pred HHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhh-HHHHHHHHhcCCCc
Q psy3611 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEG-AKMLAAVFKKLKTL 323 (472)
Q Consensus 245 l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~~~~~L 323 (472)
+++.+. .|+.++++.+++|.+++.+...+.+.+... ..+.++.+.++.....+ ...+.........+
T Consensus 282 L~~~l~--~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 349 (478)
T KOG4308|consen 282 LAEVLV--SCRQLEELSLSNNPLTDYGVELLLEALERK----------TPLLHLVLGGTGKGTRGGTSVLAEADAQRQLL 349 (478)
T ss_pred HHHHHh--hhHHHHHhhcccCccccHHHHHHHHHhhhc----------ccchhhhccccCccchhHHHHHHHHHHHhhhh
Confidence 999885 567999999999999999999998888875 46777888866655443 33344444444455
Q ss_pred cEEeCCCCCCChhHHHHHHHHHhcCCC-ccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhh
Q psy3611 324 ERVEMPQNGIYHVGITALSDAFEENKN-LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 402 (472)
Q Consensus 324 ~~L~l~~~~i~~~~~~~l~~~l~~~~~-L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~ 402 (472)
.....+++...+.+...+.....+-+. +..+++..+.+...+...++..+...+.++.++++.|...++++..+.....
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~ 429 (478)
T KOG4308|consen 350 SELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLS 429 (478)
T ss_pred HHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhh
Confidence 555666677666665556655555443 7788888887777788888888899999999999999999888877777777
Q ss_pred cCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 403 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 403 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
.+..++.+.++.|.++..|...+..+....+........+|.++.
T Consensus 430 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (478)
T KOG4308|consen 430 RNGSLKALRLSRNPITALGTEELQRALALNPGILAIRLRGNVIGR 474 (478)
T ss_pred hcccchhhhhccChhhhcchHHHHHHHhcCCCcceeecccCcccc
Confidence 667999999999999999999999999999999999999887753
No 17
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.67 E-value=3.2e-15 Score=131.07 Aligned_cols=237 Identities=19% Similarity=0.214 Sum_probs=194.1
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCC------hhHHHHHHHHHHhhcccCcCCCCCcceeE
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG------ITGCKLLSKALHDCYESSKKEGSPLALKV 297 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~------~~~~~~l~~~l~~~~~~~~~~~~~~~L~~ 297 (472)
...++++++++|.++..+++.++..++.. ++|+..+++.-..+ ......+.+++.. ||.|+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~--~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk----------cp~l~~ 96 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANV--RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK----------CPRLQK 96 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhh--cceeEeehhhhhhcccHHHHHHHHHHHHHHHhc----------CCccee
Confidence 57899999999999999999999998754 47888888764322 2333445555555 689999
Q ss_pred EEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhc---------CCCccEEEccCCCCCcccHHH
Q psy3611 298 FIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEE---------NKNLRHLNLNDNTITYKGAIP 368 (472)
Q Consensus 298 L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~---------~~~L~~L~l~~n~l~~~~~~~ 368 (472)
.++|.|.++..-...+...+++...|++|.+++|.++..+-.++.+++.. -|.|+.++..+|++..-....
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence 99999999988777788889999999999999999998766677755533 368999999999987633445
Q ss_pred HHHHhcCCCCCcEEEcCCCCCChHHHHHHH-HHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 369 LGQALSKLPSLAILNLGDCLLKSAGASSIA-KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 369 l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
++..+.....|+.+.+..|.|..+|+..+. ..+..+++|+.|||+.|-++..|-+.++.++...+.|++|.+..|-++.
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 556677778999999999999999875553 4566789999999999999999988899999888899999999999999
Q ss_pred hHHHHHHHHHHh--CCceeEEecCCCC
Q psy3611 448 EGVEEMEKLMKS--FGMAAALVLEDDE 472 (472)
Q Consensus 448 ~~~~~l~~~l~~--~~~L~~L~l~~~~ 472 (472)
.|...+...+.+ .|+|..|..+|||
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhh
Confidence 999887776654 7889999999986
No 18
>KOG0618|consensus
Probab=99.67 E-value=2.7e-17 Score=165.83 Aligned_cols=326 Identities=20% Similarity=0.211 Sum_probs=204.9
Q ss_pred EeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCC
Q psy3611 15 VEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 94 (472)
Q Consensus 15 L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~ 94 (472)
|+|++|.+.. ..+..+++|+.|....|.+. ...-..++++.|+.+.|.++... ......
T Consensus 183 ldLr~N~~~~-------~dls~~~~l~~l~c~rn~ls--------~l~~~g~~l~~L~a~~n~l~~~~------~~p~p~ 241 (1081)
T KOG0618|consen 183 LDLRYNEMEV-------LDLSNLANLEVLHCERNQLS--------ELEISGPSLTALYADHNPLTTLD------VHPVPL 241 (1081)
T ss_pred eecccchhhh-------hhhhhccchhhhhhhhcccc--------eEEecCcchheeeeccCcceeec------cccccc
Confidence 6666665442 22445566666666666552 11123467888888888887421 122357
Q ss_pred cccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhh
Q psy3611 95 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESE 174 (472)
Q Consensus 95 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~ 174 (472)
+|++++++.+.++. +++++..+.+++.+++.+|.++ +.+..+.. .++++.+......-. .++.
T Consensus 242 nl~~~dis~n~l~~-----lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~----~~~L~~l~~~~nel~---yip~---- 304 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-----LPEWIGACANLEALNANHNRLV-ALPLRISR----ITSLVSLSAAYNELE---YIPP---- 304 (1081)
T ss_pred cceeeecchhhhhc-----chHHHHhcccceEecccchhHH-hhHHHHhh----hhhHHHHHhhhhhhh---hCCC----
Confidence 89999999999985 7899999999999999999884 33443433 445544443222110 1111
Q ss_pred cccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCC
Q psy3611 175 EENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCC 254 (472)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~ 254 (472)
.....+.|+.|++..|.+.......+.-. .
T Consensus 305 ---------------------------------------------~le~~~sL~tLdL~~N~L~~lp~~~l~v~-----~ 334 (1081)
T KOG0618|consen 305 ---------------------------------------------FLEGLKSLRTLDLQSNNLPSLPDNFLAVL-----N 334 (1081)
T ss_pred ---------------------------------------------cccccceeeeeeehhccccccchHHHhhh-----h
Confidence 12335789999999998855443222211 1
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 334 (472)
..++.|+.+.+++.... .... ...+.|..|.+.+|.+++. ..+.+....+|+.|++++|+++
T Consensus 335 ~~l~~ln~s~n~l~~lp--~~~e------------~~~~~Lq~LylanN~Ltd~----c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 335 ASLNTLNVSSNKLSTLP--SYEE------------NNHAALQELYLANNHLTDS----CFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred HHHHHHhhhhccccccc--cccc------------hhhHHHHHHHHhcCccccc----chhhhccccceeeeeecccccc
Confidence 14666676666654221 0000 1134577788888888875 4446667888888888888877
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcC
Q psy3611 335 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC 414 (472)
Q Consensus 335 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~ 414 (472)
... +..+.+++.|+.|++++|+++ .+++.+..++.|++|...+|.+.. +| .+...++|+.+|++.
T Consensus 397 ~fp----as~~~kle~LeeL~LSGNkL~-----~Lp~tva~~~~L~tL~ahsN~l~~-----fP-e~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 397 SFP----ASKLRKLEELEELNLSGNKLT-----TLPDTVANLGRLHTLRAHSNQLLS-----FP-ELAQLPQLKVLDLSC 461 (1081)
T ss_pred cCC----HHHHhchHHhHHHhcccchhh-----hhhHHHHhhhhhHHHhhcCCceee-----ch-hhhhcCcceEEeccc
Confidence 332 345556778888888888877 366777788888888888888764 55 567778888888888
Q ss_pred CCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecC
Q psy3611 415 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLE 469 (472)
Q Consensus 415 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 469 (472)
|.++... ++..... ++|++||++||.-.... .+.++.++.+..++++
T Consensus 462 N~L~~~~---l~~~~p~-p~LkyLdlSGN~~l~~d----~~~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 462 NNLSEVT---LPEALPS-PNLKYLDLSGNTRLVFD----HKTLKVLKSLSQMDIT 508 (1081)
T ss_pred chhhhhh---hhhhCCC-cccceeeccCCcccccc----hhhhHHhhhhhheecc
Confidence 8877641 3333322 78888888888632222 2334445555555544
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=5e-16 Score=160.72 Aligned_cols=265 Identities=20% Similarity=0.245 Sum_probs=161.7
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
..-..|+++++.++. +|..+. ++|+.|++.+|.++. +| ...++|++|++++|.++. ++..
T Consensus 201 ~~~~~LdLs~~~Lts-----LP~~l~--~~L~~L~L~~N~Lt~---LP-----~lp~~Lk~LdLs~N~Lts-----LP~l 260 (788)
T PRK15387 201 NGNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLTS---LP-----ALPPELRTLEVSGNQLTS-----LPVL 260 (788)
T ss_pred CCCcEEEcCCCCCCc-----CCcchh--cCCCEEEccCCcCCC---CC-----CCCCCCcEEEecCCccCc-----ccCc
Confidence 345677787777763 555443 467888888877642 23 124678888888887774 3322
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcccc
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQ 169 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~ 169 (472)
.++|++|++++|.+.. ++.. ...|+.|++++|.+..- |
T Consensus 261 ---p~sL~~L~Ls~N~L~~-----Lp~l---p~~L~~L~Ls~N~Lt~L-------------------------------P 298 (788)
T PRK15387 261 ---PPGLLELSIFSNPLTH-----LPAL---PSGLCKLWIFGNQLTSL-------------------------------P 298 (788)
T ss_pred ---ccccceeeccCCchhh-----hhhc---hhhcCEEECcCCccccc-------------------------------c
Confidence 3577788888877763 4432 24677777777766421 0
Q ss_pred chhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHH
Q psy3611 170 DEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLL 249 (472)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l 249 (472)
. ..++|++|++++|.+..... +
T Consensus 299 ~----------------------------------------------------~p~~L~~LdLS~N~L~~Lp~--l---- 320 (788)
T PRK15387 299 V----------------------------------------------------LPPGLQELSVSDNQLASLPA--L---- 320 (788)
T ss_pred c----------------------------------------------------cccccceeECCCCccccCCC--C----
Confidence 0 01567777887777743211 1
Q ss_pred hccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCC
Q psy3611 250 RSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP 329 (472)
Q Consensus 250 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~ 329 (472)
+ .+|+.|++++|.++... .+ +.+|+.|++++|.+.. +|. ...+|+.|+++
T Consensus 321 --p--~~L~~L~Ls~N~L~~LP--~l----------------p~~Lq~LdLS~N~Ls~-----LP~---lp~~L~~L~Ls 370 (788)
T PRK15387 321 --P--SELCKLWAYNNQLTSLP--TL----------------PSGLQELSVSDNQLAS-----LPT---LPSELYKLWAY 370 (788)
T ss_pred --c--ccccccccccCcccccc--cc----------------ccccceEecCCCccCC-----CCC---CCcccceehhh
Confidence 1 25777777777765211 00 1357778888777764 333 13567777777
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCE
Q psy3611 330 QNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 409 (472)
Q Consensus 330 ~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~ 409 (472)
+|++.. ++.. ..+|+.|++++|.++. . +. ..+.|+.|++++|.+.. ++.. .+.|+.
T Consensus 371 ~N~L~~-----LP~l---~~~L~~LdLs~N~Lt~--L---P~---l~s~L~~LdLS~N~Lss-----IP~l---~~~L~~ 426 (788)
T PRK15387 371 NNRLTS-----LPAL---PSGLKELIVSGNRLTS--L---PV---LPSELKELMVSGNRLTS-----LPML---PSGLLS 426 (788)
T ss_pred cccccc-----Cccc---ccccceEEecCCcccC--C---CC---cccCCCEEEccCCcCCC-----CCcc---hhhhhh
Confidence 777762 2221 2457778888777762 1 11 13467778888877764 3321 245677
Q ss_pred EECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHH
Q psy3611 410 VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEM 453 (472)
Q Consensus 410 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 453 (472)
|++++|.++. +|..+..++.|+.|++++|++++.....+
T Consensus 427 L~Ls~NqLt~-----LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 427 LSVYRNQLTR-----LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhccCcccc-----cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 7777777775 67777777778888888887776555544
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.63 E-value=4.8e-16 Score=172.22 Aligned_cols=347 Identities=14% Similarity=0.134 Sum_probs=202.8
Q ss_pred HHHhhhcCCccEEeccCCCcchh-h-HHHHHHhhhcCC-CCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCcccc
Q psy3611 3 AAVFKKLKTLEHVEMPQNGIYHV-G-ITALSDAFEENK-KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLK 79 (472)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~l~~~-~-~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~ 79 (472)
.++|.++++|+.|.+..+..... . ...+|..+..+| +|+.|.+.++.+ ..+| ..+ ...+|++|+++++.+.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l---~~lP--~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL---RCMP--SNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC---CCCC--CcC-CccCCcEEECcCcccc
Confidence 36799999999999976542210 0 013455555553 688888888765 3444 233 3578888988888776
Q ss_pred chhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhcc
Q psy3611 80 SAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 159 (472)
Q Consensus 80 ~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~ 159 (472)
. ++..+..+++|+.|+++++.... .++ .+..+++|+.|++++|..-...+.. +..+++|+.|.+..
T Consensus 625 ~-----L~~~~~~l~~Lk~L~Ls~~~~l~----~ip-~ls~l~~Le~L~L~~c~~L~~lp~s----i~~L~~L~~L~L~~ 690 (1153)
T PLN03210 625 K-----LWDGVHSLTGLRNIDLRGSKNLK----EIP-DLSMATNLETLKLSDCSSLVELPSS----IQYLNKLEDLDMSR 690 (1153)
T ss_pred c-----cccccccCCCCCEEECCCCCCcC----cCC-ccccCCcccEEEecCCCCccccchh----hhccCCCCEEeCCC
Confidence 3 55556678888888888764322 233 3566788888888887544443333 33466666665554
Q ss_pred CCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCCh
Q psy3611 160 DEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGP 239 (472)
Q Consensus 160 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 239 (472)
+.. ...+|.. ..+..++.+++..- + .... .+ ....+|++|+++++.+..
T Consensus 691 c~~--L~~Lp~~-----------i~l~sL~~L~Lsgc----------~----~L~~-~p---~~~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 691 CEN--LEILPTG-----------INLKSLYRLNLSGC----------S----RLKS-FP---DISTNISWLDLDETAIEE 739 (1153)
T ss_pred CCC--cCccCCc-----------CCCCCCCEEeCCCC----------C----Cccc-cc---cccCCcCeeecCCCcccc
Confidence 321 1112210 01111111111100 0 0000 00 012466777777766532
Q ss_pred hhHHHHHHHHhccCCCcceEEEeeCCCCChh--HHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHH
Q psy3611 240 IGVEGLADLLRSSCCFALEELKLNNNGLGIT--GCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVF 317 (472)
Q Consensus 240 ~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~--~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 317 (472)
... . ..+++|++|.+.++..... ....+.. .....+++|+.|++++|..... +|..+
T Consensus 740 lP~-----~---~~l~~L~~L~l~~~~~~~l~~~~~~l~~---------~~~~~~~sL~~L~Ls~n~~l~~----lP~si 798 (1153)
T PLN03210 740 FPS-----N---LRLENLDELILCEMKSEKLWERVQPLTP---------LMTMLSPSLTRLFLSDIPSLVE----LPSSI 798 (1153)
T ss_pred ccc-----c---ccccccccccccccchhhccccccccch---------hhhhccccchheeCCCCCCccc----cChhh
Confidence 211 0 1234666666655332100 0000000 0112246789999988865543 77788
Q ss_pred hcCCCccEEeCCCCC-CChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHH
Q psy3611 318 KKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396 (472)
Q Consensus 318 ~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~ 396 (472)
.++++|+.|++++|. +. .++..+ .+++|+.|++++|.... .++. ..++|+.|++++|.+..
T Consensus 799 ~~L~~L~~L~Ls~C~~L~-----~LP~~~-~L~sL~~L~Ls~c~~L~----~~p~---~~~nL~~L~Ls~n~i~~----- 860 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLE-----TLPTGI-NLESLESLDLSGCSRLR----TFPD---ISTNISDLNLSRTGIEE----- 860 (1153)
T ss_pred hCCCCCCEEECCCCCCcC-----eeCCCC-CccccCEEECCCCCccc----cccc---cccccCEeECCCCCCcc-----
Confidence 889999999998875 33 334333 57789999999875321 1111 23578899999988875
Q ss_pred HHHHhhcCCCCCEEECcCC-CCCchhHHHHHHHHhcCCcccEEEccCCC
Q psy3611 397 IAKYLTDNTTLEDVNLTCN-EISVQGGLDLVKAMKNKTKLKQINVSENQ 444 (472)
Q Consensus 397 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 444 (472)
+|..+..+++|+.|++++| .+.. ++..+..++.|+.+++++|.
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~-----l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQR-----VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCc-----cCcccccccCCCeeecCCCc
Confidence 7777888899999999876 5554 55666677888888888774
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.61 E-value=1.2e-15 Score=168.99 Aligned_cols=363 Identities=15% Similarity=0.152 Sum_probs=211.6
Q ss_pred CccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccc--hHHHHHHhccC-CCCcEEeccCccccchhHHHHH
Q psy3611 11 TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKG--AIPLGQALSKL-PSLAILNLGDCLLKSAGASSIA 87 (472)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~l~~~-~~L~~L~ls~~~l~~~~~~~l~ 87 (472)
..+.+.+.-..+.... .-+.+|..+++|+.|.+..+.+.... ...+...+..+ ++|+.|++.++++.. +|
T Consensus 533 ~v~~i~l~~~~~~~~~--i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-----lP 605 (1153)
T PLN03210 533 KVLGITLDIDEIDELH--IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-----MP 605 (1153)
T ss_pred eeeEEEeccCccceee--ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-----CC
Confidence 3444444433333211 23566889999999999765432111 11111344444 479999999998764 44
Q ss_pred HHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcc
Q psy3611 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDE 167 (472)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~ 167 (472)
..+ ...+|+.|+++++.+.. ++..+..+++|+.|+++++..-...+. +...+.|+.|.+..+..- ..
T Consensus 606 ~~f-~~~~L~~L~L~~s~l~~-----L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L--~~ 672 (1153)
T PLN03210 606 SNF-RPENLVKLQMQGSKLEK-----LWDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSL--VE 672 (1153)
T ss_pred CcC-CccCCcEEECcCccccc-----cccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCc--cc
Confidence 443 46899999999998873 667777899999999998753333232 333667777766554321 12
Q ss_pred ccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHH
Q psy3611 168 EQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLAD 247 (472)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 247 (472)
+|. ....+.++..+++..-. ....+... ..+++|++|++++|..... +..
T Consensus 673 lp~----------si~~L~~L~~L~L~~c~--------------~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~----~p~ 722 (1153)
T PLN03210 673 LPS----------SIQYLNKLEDLDMSRCE--------------NLEILPTG--INLKSLYRLNLSGCSRLKS----FPD 722 (1153)
T ss_pred cch----------hhhccCCCCEEeCCCCC--------------CcCccCCc--CCCCCCCEEeCCCCCCccc----ccc
Confidence 222 01112222222221100 00000000 0346777888877754111 111
Q ss_pred HHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChh--hHHHH-HHHHhcCCCcc
Q psy3611 248 LLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENE--GAKML-AAVFKKLKTLE 324 (472)
Q Consensus 248 ~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~l-~~~~~~~~~L~ 324 (472)
. ..+|++|+++++.+... +. ...+++|+.|++.++....- ....+ +.....+++|+
T Consensus 723 ~-----~~nL~~L~L~~n~i~~l-----P~-----------~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 723 I-----STNISWLDLDETAIEEF-----PS-----------NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred c-----cCCcCeeecCCCccccc-----cc-----------cccccccccccccccchhhccccccccchhhhhccccch
Confidence 1 13678888877776421 11 01245677777765332100 00001 11223457899
Q ss_pred EEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcC
Q psy3611 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404 (472)
Q Consensus 325 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~ 404 (472)
.|++++|... ..++..+.++++|+.|++++|..-. .++..+ .+++|+.|++++|..... ++. ..
T Consensus 782 ~L~Ls~n~~l----~~lP~si~~L~~L~~L~Ls~C~~L~----~LP~~~-~L~sL~~L~Ls~c~~L~~----~p~---~~ 845 (1153)
T PLN03210 782 RLFLSDIPSL----VELPSSIQNLHKLEHLEIENCINLE----TLPTGI-NLESLESLDLSGCSRLRT----FPD---IS 845 (1153)
T ss_pred heeCCCCCCc----cccChhhhCCCCCCEEECCCCCCcC----eeCCCC-CccccCEEECCCCCcccc----ccc---cc
Confidence 9999998643 1457778889999999999875321 133332 578999999999864332 332 23
Q ss_pred CCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC-CChhHHHHHHHHHHhCCceeEEecCC
Q psy3611 405 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ-FGEEGVEEMEKLMKSFGMAAALVLED 470 (472)
Q Consensus 405 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~ 470 (472)
++|+.|+|++|.+.. +|..+..+++|++|++++|+ +.. +......++.|+.+++++
T Consensus 846 ~nL~~L~Ls~n~i~~-----iP~si~~l~~L~~L~L~~C~~L~~-----l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 846 TNISDLNLSRTGIEE-----VPWWIEKFSNLSFLDMNGCNNLQR-----VSLNISKLKHLETVDFSD 902 (1153)
T ss_pred cccCEeECCCCCCcc-----ChHHHhcCCCCCEEECCCCCCcCc-----cCcccccccCCCeeecCC
Confidence 689999999999986 78889999999999999864 432 122234466677777654
No 22
>KOG4341|consensus
Probab=99.55 E-value=2.1e-14 Score=133.20 Aligned_cols=214 Identities=18% Similarity=0.216 Sum_probs=148.3
Q ss_pred hcCCcccEEeCCCCCC-ChhhHHHHHHHHhccCCCcceEEEeeCCC-CChhHHHHHHHHHHhhcccCcCCCCCcceeEEE
Q psy3611 222 KTGARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNG-LGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299 (472)
Q Consensus 222 ~~~~~L~~L~l~~~~l-~~~~~~~l~~~l~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~ 299 (472)
+++..++++.+.+|.- ..+.....+ ..|+.+.++++..|. ++|.+...++.. |..|+.++
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~-----~~~~~i~~lnl~~c~~lTD~~~~~i~~~-------------c~~lq~l~ 300 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAA-----AYCLEILKLNLQHCNQLTDEDLWLIACG-------------CHALQVLC 300 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHh-----ccChHhhccchhhhccccchHHHHHhhh-------------hhHhhhhc
Confidence 3445566665555533 333323222 245567777765544 788887776665 34578888
Q ss_pred cCCCCCChhhHHHHHHHHhcCCCccEEeCCCCC-CChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCC
Q psy3611 300 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPS 378 (472)
Q Consensus 300 l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~ 378 (472)
.+++.-.+ ...+.....++.+|+.+-+..|+ +++.|+..+.. +++.|+.+++..+...-++ .+...-..++.
T Consensus 301 ~s~~t~~~--d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r---n~~~Le~l~~e~~~~~~d~--tL~sls~~C~~ 373 (483)
T KOG4341|consen 301 YSSCTDIT--DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR---NCPHLERLDLEECGLITDG--TLASLSRNCPR 373 (483)
T ss_pred ccCCCCCc--hHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc---CChhhhhhcccccceehhh--hHhhhccCCch
Confidence 88765432 22344445578999999999985 77777665554 5789999999999776444 35555567999
Q ss_pred CcEEEcCCC-CCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC-CChhHHHHHHHH
Q psy3611 379 LAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ-FGEEGVEEMEKL 456 (472)
Q Consensus 379 L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~~ 456 (472)
|+.|.++.| .++++|++.+...-.....|+.+.++++....+ ...+.+..|++|+.+++.+++ ++..++..+..
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d---~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~- 449 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD---ATLEHLSICRNLERIELIDCQDVTKEAISRFAT- 449 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH---HHHHHHhhCcccceeeeechhhhhhhhhHHHHh-
Confidence 999999998 577888877777667779999999999965444 267888999999999998886 66565555554
Q ss_pred HHhCCceeEE
Q psy3611 457 MKSFGMAAAL 466 (472)
Q Consensus 457 l~~~~~L~~L 466 (472)
++|+++..
T Consensus 450 --~lp~i~v~ 457 (483)
T KOG4341|consen 450 --HLPNIKVH 457 (483)
T ss_pred --hCccceeh
Confidence 56666543
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=1.4e-14 Score=150.85 Aligned_cols=55 Identities=16% Similarity=0.326 Sum_probs=27.9
Q ss_pred CCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCC
Q psy3611 67 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 135 (472)
Q Consensus 67 ~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 135 (472)
+|+.|++++|.++. ++..+. ++|++|++++|.++. ++..+. .+|+.|++++|.+.
T Consensus 200 ~L~~L~Ls~N~Lts-----LP~~l~--~nL~~L~Ls~N~Lts-----LP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 200 QITTLILDNNELKS-----LPENLQ--GNIKTLYANSNQLTS-----IPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred CCcEEEecCCCCCc-----CChhhc--cCCCEEECCCCcccc-----CChhhh--ccccEEECcCCccC
Confidence 55666666665553 222221 356666666665552 333322 35666666665553
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=1.6e-14 Score=149.76 Aligned_cols=95 Identities=22% Similarity=0.326 Sum_probs=72.8
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++|+.|++.+|.++. +|. ..++|++|++++|.++. +| . ..++|+.|++++|.+.. ++..
T Consensus 222 ~~L~~L~L~~N~Lt~-----LP~---lp~~Lk~LdLs~N~Lts---LP--~---lp~sL~~L~Ls~N~L~~-----Lp~l 280 (788)
T PRK15387 222 AHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQLTS---LP--V---LPPGLLELSIFSNPLTH-----LPAL 280 (788)
T ss_pred cCCCEEEccCCcCCC-----CCC---CCCCCcEEEecCCccCc---cc--C---cccccceeeccCCchhh-----hhhc
Confidence 479999999998884 443 25899999999998852 23 1 23689999999998874 4543
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCCh
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 136 (472)
.+.|+.|++++|.++. ++.. .++|+.|++++|.+..
T Consensus 281 ---p~~L~~L~Ls~N~Lt~-----LP~~---p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 281 ---PSGLCKLWIFGNQLTS-----LPVL---PPGLQELSVSDNQLAS 316 (788)
T ss_pred ---hhhcCEEECcCCcccc-----cccc---ccccceeECCCCcccc
Confidence 3678999999999984 4532 4689999999998763
No 25
>KOG4341|consensus
Probab=99.51 E-value=3.4e-14 Score=131.91 Aligned_cols=188 Identities=20% Similarity=0.224 Sum_probs=97.0
Q ss_pred CCcccEEeCCCCCC-ChhhHHHHHHHHhccCCCcceEEEeeCCC-CChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcC
Q psy3611 224 GARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNG-LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 301 (472)
Q Consensus 224 ~~~L~~L~l~~~~l-~~~~~~~l~~~l~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~ 301 (472)
+..+.++++..+.. ++.+.-.++.+ |..|+.|+.+++. +++.....+.+. +.+|+.+.+.
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~-----c~~lq~l~~s~~t~~~d~~l~aLg~~-------------~~~L~~l~l~ 328 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACG-----CHALQVLCYSSCTDITDEVLWALGQH-------------CHNLQVLELS 328 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhh-----hhHhhhhcccCCCCCchHHHHHHhcC-------------CCceEEEecc
Confidence 34444555444433 55443333332 3456666665544 344433333321 3566666666
Q ss_pred CCC-CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCC-CCcccHHHHHHHhcCCCCC
Q psy3611 302 RNR-LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT-ITYKGAIPLGQALSKLPSL 379 (472)
Q Consensus 302 ~~~-l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L 379 (472)
+++ +++.|+..+ -.+++.|+.+++..+.....+ .+...-.+++.|+.+.++++. ++++|...+...-.....+
T Consensus 329 ~c~~fsd~~ft~l---~rn~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 329 GCQQFSDRGFTML---GRNCPHLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGL 403 (483)
T ss_pred ccchhhhhhhhhh---hcCChhhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccccc
Confidence 665 333333322 235566777777666554333 333333356667777777663 4555554444444445566
Q ss_pred cEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCC-CCCchhHHHHHHHHhcCCcccEEEc
Q psy3611 380 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN-EISVQGGLDLVKAMKNKTKLKQINV 440 (472)
Q Consensus 380 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l 440 (472)
..+.+++|....+. ..+.+..++.|+.+++-++ .++..+++.+.. ++|++++..+
T Consensus 404 ~~lEL~n~p~i~d~---~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~---~lp~i~v~a~ 459 (483)
T KOG4341|consen 404 EVLELDNCPLITDA---TLEHLSICRNLERIELIDCQDVTKEAISRFAT---HLPNIKVHAY 459 (483)
T ss_pred ceeeecCCCCchHH---HHHHHhhCcccceeeeechhhhhhhhhHHHHh---hCccceehhh
Confidence 77777777655443 3455566677777776655 455554333333 4455554433
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=8.9e-14 Score=144.96 Aligned_cols=261 Identities=20% Similarity=0.246 Sum_probs=166.0
Q ss_pred CCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHH
Q psy3611 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 145 (472)
Q Consensus 66 ~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 145 (472)
.+...|+++++.++. +|..+ .+.|+.|++++|.++. ++..+. .+|++|++++|.+.. .+..+..
T Consensus 178 ~~~~~L~L~~~~Lts-----LP~~I--p~~L~~L~Ls~N~Lts-----LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~~- 241 (754)
T PRK15370 178 NNKTELRLKILGLTT-----IPACI--PEQITTLILDNNELKS-----LPENLQ--GNIKTLYANSNQLTS-IPATLPD- 241 (754)
T ss_pred cCceEEEeCCCCcCc-----CCccc--ccCCcEEEecCCCCCc-----CChhhc--cCCCEEECCCCcccc-CChhhhc-
Confidence 356788888887774 34333 2578899999998884 454443 589999999887763 2222211
Q ss_pred HHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCC
Q psy3611 146 MKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGA 225 (472)
Q Consensus 146 l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (472)
.++.|.+....- ..+|. ....
T Consensus 242 -----~L~~L~Ls~N~L---~~LP~---------------------------------------------------~l~s 262 (754)
T PRK15370 242 -----TIQEMELSINRI---TELPE---------------------------------------------------RLPS 262 (754)
T ss_pred -----cccEEECcCCcc---CcCCh---------------------------------------------------hHhC
Confidence 222222221100 01111 0124
Q ss_pred cccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCC
Q psy3611 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 305 (472)
Q Consensus 226 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l 305 (472)
.|++|++++|.+.... ..+ .++|+.|++++|.++... .. + +++|+.|++++|.+
T Consensus 263 ~L~~L~Ls~N~L~~LP-~~l--------~~sL~~L~Ls~N~Lt~LP-----~~----------l--p~sL~~L~Ls~N~L 316 (754)
T PRK15370 263 ALQSLDLFHNKISCLP-ENL--------PEELRYLSVYDNSIRTLP-----AH----------L--PSGITHLNVQSNSL 316 (754)
T ss_pred CCCEEECcCCccCccc-ccc--------CCCCcEEECCCCccccCc-----cc----------c--hhhHHHHHhcCCcc
Confidence 7889999988885321 111 247999999999876321 10 0 13688888998888
Q ss_pred ChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcC
Q psy3611 306 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 385 (472)
Q Consensus 306 ~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~ 385 (472)
.. ++..+ .++|+.|++++|.++. ++..+ .++|+.|++++|.+.. ++..+ .+.|+.|+++
T Consensus 317 t~-----LP~~l--~~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~L~~-----LP~~l--p~~L~~LdLs 375 (754)
T PRK15370 317 TA-----LPETL--PPGLKTLEAGENALTS-----LPASL--PPELQVLDVSKNQITV-----LPETL--PPTITTLDVS 375 (754)
T ss_pred cc-----CCccc--cccceeccccCCcccc-----CChhh--cCcccEEECCCCCCCc-----CChhh--cCCcCEEECC
Confidence 74 44322 3689999999998873 33333 2689999999998872 22333 3689999999
Q ss_pred CCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHH
Q psy3611 386 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456 (472)
Q Consensus 386 ~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 456 (472)
+|.+.. ++..+. ..|+.|++++|.+.... ..++......+.+..+++.+|+++...++.+...
T Consensus 376 ~N~Lt~-----LP~~l~--~sL~~LdLs~N~L~~LP-~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~~L 438 (754)
T PRK15370 376 RNALTN-----LPENLP--AALQIMQASRNNLVRLP-ESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRL 438 (754)
T ss_pred CCcCCC-----CCHhHH--HHHHHHhhccCCcccCc-hhHHHHhhcCCCccEEEeeCCCccHHHHHHHHHh
Confidence 999885 454443 36888999999887510 1133344455788999999999987666655443
No 27
>KOG4237|consensus
Probab=99.43 E-value=3.7e-15 Score=137.14 Aligned_cols=208 Identities=17% Similarity=0.201 Sum_probs=118.7
Q ss_pred hhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEE
Q psy3611 220 SLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299 (472)
Q Consensus 220 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~ 299 (472)
.++.+++|++|++++|.++.....+|... ..+++|.|..|++....-.++ .++..|+.|+
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~------a~l~eL~L~~N~l~~v~~~~f--------------~~ls~L~tL~ 328 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGA------AELQELYLTRNKLEFVSSGMF--------------QGLSGLKTLS 328 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcch------hhhhhhhcCcchHHHHHHHhh--------------hccccceeee
Confidence 36677888888888888877766666654 268888888888753332222 1246788888
Q ss_pred cCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChh-HHHHHHHHHhcC----------C-CccEEEccCCCCCcccHH
Q psy3611 300 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV-GITALSDAFEEN----------K-NLRHLNLNDNTITYKGAI 367 (472)
Q Consensus 300 l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~~l~~~----------~-~L~~L~l~~n~l~~~~~~ 367 (472)
+++|+++.. .|.+|.....|.+|++-.|.+... .+..+.+++.+. | .++.+.+++..+++-...
T Consensus 329 L~~N~it~~----~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~ 404 (498)
T KOG4237|consen 329 LYDNQITTV----APGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG 404 (498)
T ss_pred ecCCeeEEE----ecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccC
Confidence 888888863 455666777888888877665432 233555555331 1 355666666654421100
Q ss_pred HHHHHhc-----CC----CCCcEEE-cCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccE
Q psy3611 368 PLGQALS-----KL----PSLAILN-LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 437 (472)
Q Consensus 368 ~l~~~l~-----~~----~~L~~L~-l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 437 (472)
-++... .+ +.+.++. .++..++ .+|..+. ....++.+.+|.++. ++.. ....| .
T Consensus 405 -~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-----~lp~~iP--~d~telyl~gn~~~~-----vp~~--~~~~l-~ 468 (498)
T KOG4237|consen 405 -GPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-----LLPRGIP--VDVTELYLDGNAITS-----VPDE--LLRSL-L 468 (498)
T ss_pred -CccccCCCCCCCCCCCcchhhhhHhhcccchh-----hcCCCCC--chhHHHhcccchhcc-----cCHH--HHhhh-h
Confidence 001110 01 1111111 0111111 1222222 344678888888876 4444 34566 7
Q ss_pred EEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 438 INVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 438 L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+++++|+|..-.-.. |.....+.+|-|+||
T Consensus 469 ~dls~n~i~~Lsn~t----f~n~tql~tlilsyn 498 (498)
T KOG4237|consen 469 LDLSNNRISSLSNYT----FSNMTQLSTLILSYN 498 (498)
T ss_pred cccccCceehhhccc----ccchhhhheeEEecC
Confidence 899999876433333 334667888888886
No 28
>KOG4237|consensus
Probab=99.23 E-value=9.7e-13 Score=121.42 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=57.2
Q ss_pred HHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcC-CccC
Q psy3611 29 ALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC-NEIS 107 (472)
Q Consensus 29 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~-~~i~ 107 (472)
.+|.-+ -+.-..++|..|.|+ .+|- .+|..+++|+.||||+|.|+.++. +++..+..+.+|.+-+ |.|+
T Consensus 60 eVP~~L--P~~tveirLdqN~I~---~iP~-~aF~~l~~LRrLdLS~N~Is~I~p----~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 60 EVPANL--PPETVEIRLDQNQIS---SIPP-GAFKTLHRLRRLDLSKNNISFIAP----DAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred cCcccC--CCcceEEEeccCCcc---cCCh-hhccchhhhceecccccchhhcCh----HhhhhhHhhhHHHhhcCCchh
Confidence 445443 245677788888874 3333 577888888888888888876433 4444455555554444 7777
Q ss_pred cchHHHHHHHhhhCCCccEEEecCCcCC
Q psy3611 108 VQGGLDLVKAMKNKTKLKQINVSENQFG 135 (472)
Q Consensus 108 ~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 135 (472)
+ --.+.+..+.+++.|.+.-|.+.
T Consensus 130 ~----l~k~~F~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 130 D----LPKGAFGGLSSLQRLLLNANHIN 153 (498)
T ss_pred h----hhhhHhhhHHHHHHHhcChhhhc
Confidence 5 22334455666777766655554
No 29
>KOG3207|consensus
Probab=99.23 E-value=2.1e-12 Score=120.79 Aligned_cols=243 Identities=19% Similarity=0.206 Sum_probs=142.6
Q ss_pred EeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCC
Q psy3611 15 VEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 94 (472)
Q Consensus 15 L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~ 94 (472)
+.+++-++..-|...+...-++..+|+.+.|.++.....+.. .....|++++.|||+.|-+.. |..+++...+++
T Consensus 98 ~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp 172 (505)
T KOG3207|consen 98 LSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLP 172 (505)
T ss_pred hhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhcc
Confidence 344455555566667777777778888888888876544432 245667888888888888765 556777777788
Q ss_pred cccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhh
Q psy3611 95 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESE 174 (472)
Q Consensus 95 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~ 174 (472)
+|+.|+++.|.+.......... ..++|+.|.++.|.++...+..+ +..+|.+..|.+....+.......
T Consensus 173 ~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k~V~~~---~~~fPsl~~L~L~~N~~~~~~~~~----- 241 (505)
T KOG3207|consen 173 SLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWKDVQWI---LLTFPSLEVLYLEANEIILIKATS----- 241 (505)
T ss_pred cchhcccccccccCCccccchh---hhhhhheEEeccCCCCHHHHHHH---HHhCCcHHHhhhhcccccceecch-----
Confidence 8888888888765321112222 35678888888888886544433 444777766655433211111100
Q ss_pred cccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCC
Q psy3611 175 EENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCC 254 (472)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~ 254 (472)
....+.|++|+|++|++-+....... ...
T Consensus 242 ----------------------------------------------~~i~~~L~~LdLs~N~li~~~~~~~~-----~~l 270 (505)
T KOG3207|consen 242 ----------------------------------------------TKILQTLQELDLSNNNLIDFDQGYKV-----GTL 270 (505)
T ss_pred ----------------------------------------------hhhhhHHhhccccCCccccccccccc-----ccc
Confidence 11236788888888887322211111 123
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 334 (472)
|.|..|+++.+.+++...-... +..+.-..++|+.|+++.|++.+. .....+....+|++|.+..+.++
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~--------s~~kt~~f~kL~~L~i~~N~I~~w---~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVE--------SLDKTHTFPKLEYLNISENNIRDW---RSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cchhhhhccccCcchhcCCCcc--------chhhhcccccceeeecccCccccc---cccchhhccchhhhhhccccccc
Confidence 6788888887776532211110 001112246777888887777432 12223445567777776666655
Q ss_pred h
Q psy3611 335 H 335 (472)
Q Consensus 335 ~ 335 (472)
.
T Consensus 340 ~ 340 (505)
T KOG3207|consen 340 K 340 (505)
T ss_pred c
Confidence 3
No 30
>KOG2120|consensus
Probab=99.22 E-value=5.8e-11 Score=106.00 Aligned_cols=59 Identities=17% Similarity=0.342 Sum_probs=29.1
Q ss_pred CCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC
Q psy3611 67 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 132 (472)
Q Consensus 67 ~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 132 (472)
.|+++|||...++-. .+-..++.+.+|+.|.+.++.+.| .++..++.+.+|+.|+++.|
T Consensus 186 Rlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~~LdD----~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGLRLDD----PIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHH---HHHHHHHHHHhhhhccccccccCc----HHHHHHhccccceeeccccc
Confidence 355555555444432 222334445555555555555555 34444555555555555544
No 31
>KOG2120|consensus
Probab=99.21 E-value=5.8e-11 Score=106.00 Aligned_cols=200 Identities=18% Similarity=0.259 Sum_probs=139.2
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
.+||.|++++..++...+..+ + ++|..|+.|.+.+++++|..+..+++. .+|+.++++.+.
T Consensus 185 sRlq~lDLS~s~it~stl~~i---L--s~C~kLk~lSlEg~~LdD~I~~~iAkN--------------~~L~~lnlsm~s 245 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGI---L--SQCSKLKNLSLEGLRLDDPIVNTIAKN--------------SNLVRLNLSMCS 245 (419)
T ss_pred hhhHHhhcchhheeHHHHHHH---H--HHHHhhhhccccccccCcHHHHHHhcc--------------ccceeecccccc
Confidence 678899999888765544433 3 257789999999999888777666652 678999998764
Q ss_pred -CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCC--CCcccHHHHHHHhcCCCCCcE
Q psy3611 305 -LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT--ITYKGAIPLGQALSKLPSLAI 381 (472)
Q Consensus 305 -l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~--l~~~~~~~l~~~l~~~~~L~~ 381 (472)
++..+ +...+..|..|..|+++.|.+....++.+...+ -++|+.|+++++. +.+ ..+.....++|.|.+
T Consensus 246 G~t~n~---~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~---sh~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 246 GFTENA---LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQK---SHLSTLVRRCPNLVH 317 (419)
T ss_pred ccchhH---HHHHHHhhhhHhhcCchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhhh---hHHHHHHHhCCceee
Confidence 44333 344567888999999999987765555554444 2578889998873 322 234445567899999
Q ss_pred EEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCC-CCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHh
Q psy3611 382 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN-EISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459 (472)
Q Consensus 382 L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~ 459 (472)
||+++|.....+ .+.++.+++.|+.+.++.| .|... -.-.+...|+|.+|++.++ +++..++.+.+.+.+
T Consensus 318 LDLSD~v~l~~~---~~~~~~kf~~L~~lSlsRCY~i~p~----~~~~l~s~psl~yLdv~g~-vsdt~mel~~e~~~~ 388 (419)
T KOG2120|consen 318 LDLSDSVMLKND---CFQEFFKFNYLQHLSLSRCYDIIPE----TLLELNSKPSLVYLDVFGC-VSDTTMELLKEMLSH 388 (419)
T ss_pred eccccccccCch---HHHHHHhcchheeeehhhhcCCChH----HeeeeccCcceEEEEeccc-cCchHHHHHHHhCcc
Confidence 999988654444 5667777888999999877 45443 2334567789999998886 455677777665443
No 32
>KOG3207|consensus
Probab=99.12 E-value=9.6e-12 Score=116.44 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=37.0
Q ss_pred EEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcC
Q psy3611 70 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134 (472)
Q Consensus 70 ~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i 134 (472)
.+.+++-++...|++.++.-=++..+|+.+.|.++.+...+.. .....|++++.||++.|-+
T Consensus 97 ~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~ 158 (505)
T KOG3207|consen 97 VLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLF 158 (505)
T ss_pred HhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhH
Confidence 4445555555566666665545566677777777766654332 3445667777777776644
No 33
>KOG0617|consensus
Probab=98.98 E-value=2.7e-12 Score=105.29 Aligned_cols=178 Identities=29% Similarity=0.363 Sum_probs=126.9
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCC
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 303 (472)
...+++|-+++|.++... ..++++ .+|+.|++.+|+|.+. +..++++++|+.|+++-|
T Consensus 32 ~s~ITrLtLSHNKl~~vp-pnia~l------~nlevln~~nnqie~l---------------p~~issl~klr~lnvgmn 89 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVP-PNIAEL------KNLEVLNLSNNQIEEL---------------PTSISSLPKLRILNVGMN 89 (264)
T ss_pred hhhhhhhhcccCceeecC-CcHHHh------hhhhhhhcccchhhhc---------------Chhhhhchhhhheecchh
Confidence 367788889999885443 445554 4789999999887532 334455678888888888
Q ss_pred CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEE
Q psy3611 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383 (472)
Q Consensus 304 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 383 (472)
++.. +|..|..++-|+.|++.+|.+... .++..|..+.+|+-|.+++|.+. .++..++++++|+.|.
T Consensus 90 rl~~-----lprgfgs~p~levldltynnl~e~---~lpgnff~m~tlralyl~dndfe-----~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 90 RLNI-----LPRGFGSFPALEVLDLTYNNLNEN---SLPGNFFYMTTLRALYLGDNDFE-----ILPPDVGKLTNLQILS 156 (264)
T ss_pred hhhc-----CccccCCCchhhhhhccccccccc---cCCcchhHHHHHHHHHhcCCCcc-----cCChhhhhhcceeEEe
Confidence 7763 777788888888888888888644 34555556778888888888765 2556677788899999
Q ss_pred cCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCC---cccEEEccCCCCC
Q psy3611 384 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT---KLKQINVSENQFG 446 (472)
Q Consensus 384 l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~---~L~~L~l~~n~i~ 446 (472)
+..|.+.+ ++..++....|++|++++|+++. ++..+.+.. +-..+.+..|++-
T Consensus 157 lrdndll~-----lpkeig~lt~lrelhiqgnrl~v-----lppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 157 LRDNDLLS-----LPKEIGDLTRLRELHIQGNRLTV-----LPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred eccCchhh-----CcHHHHHHHHHHHHhcccceeee-----cChhhhhhhhhhhHHHHhhhhCCCC
Confidence 88887765 78888888889999999998876 555444332 2223445556543
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=2.9e-10 Score=97.18 Aligned_cols=125 Identities=19% Similarity=0.291 Sum_probs=31.7
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHh-cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFK-KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
..++.|++.+|.+.. + +.+. .+.+|+.|++++|.|+.. +.+..++.|+.|++++|.++..+ +
T Consensus 19 ~~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~-----~ 81 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSIS-----E 81 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-C-----H
T ss_pred ccccccccccccccc-----c-cchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCccc-----c
Confidence 445666666665552 1 1222 345566666666655521 23334555666666666555322 1
Q ss_pred Hh-cCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEE
Q psy3611 372 AL-SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQI 438 (472)
Q Consensus 372 ~l-~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 438 (472)
.+ ..+|+|++|++++|.|.+.+. ...+..+++|+.|++.+|.+.....- =...+..+|+|+.|
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~~~~~Y-R~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNE---LEPLSSLPKLRVLSLEGNPVCEKKNY-RLFVIYKLPSLKVL 145 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCC---CGGGGG-TT--EEE-TT-GGGGSTTH-HHHHHHH-TT-SEE
T ss_pred chHHhCCcCCEEECcCCcCCChHH---hHHHHcCCCcceeeccCCcccchhhH-HHHHHHHcChhhee
Confidence 11 234556666666665543211 13334455555555555554432110 11233445555555
No 35
>KOG0617|consensus
Probab=98.95 E-value=4.1e-12 Score=104.29 Aligned_cols=167 Identities=20% Similarity=0.271 Sum_probs=108.4
Q ss_pred HHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCC
Q psy3611 242 VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK 321 (472)
Q Consensus 242 ~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~ 321 (472)
...+.+.-....+.+++.|.++.|+++ . .++.+..+.+|+.|++++|+++. +|..++.++
T Consensus 20 iSsf~~~~gLf~~s~ITrLtLSHNKl~-----~----------vppnia~l~nlevln~~nnqie~-----lp~~issl~ 79 (264)
T KOG0617|consen 20 ISSFEELPGLFNMSNITRLTLSHNKLT-----V----------VPPNIAELKNLEVLNLSNNQIEE-----LPTSISSLP 79 (264)
T ss_pred cccHhhcccccchhhhhhhhcccCcee-----e----------cCCcHHHhhhhhhhhcccchhhh-----cChhhhhch
Confidence 334444322233345666667776664 2 23333445677777777777764 777777777
Q ss_pred CccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHh
Q psy3611 322 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 401 (472)
Q Consensus 322 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l 401 (472)
+|+.|+++-|++. .++..|+..|-|+.||+..|.+.+.. ++.-+-.+..|+.|.+++|.+.- ++...
T Consensus 80 klr~lnvgmnrl~-----~lprgfgs~p~levldltynnl~e~~---lpgnff~m~tlralyl~dndfe~-----lp~dv 146 (264)
T KOG0617|consen 80 KLRILNVGMNRLN-----ILPRGFGSFPALEVLDLTYNNLNENS---LPGNFFYMTTLRALYLGDNDFEI-----LPPDV 146 (264)
T ss_pred hhhheecchhhhh-----cCccccCCCchhhhhhcccccccccc---CCcchhHHHHHHHHHhcCCCccc-----CChhh
Confidence 8888887777765 45677777777777777777665311 22222223456667777776643 66677
Q ss_pred hcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 402 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 402 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
++.++|+.|.+..|.+-. ++..++....|++|++.+|.++
T Consensus 147 g~lt~lqil~lrdndll~-----lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 147 GKLTNLQILSLRDNDLLS-----LPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hhhcceeEEeeccCchhh-----CcHHHHHHHHHHHHhcccceee
Confidence 777888888888776654 6788888888888888888753
No 36
>KOG1259|consensus
Probab=98.89 E-value=5.3e-10 Score=100.01 Aligned_cols=130 Identities=25% Similarity=0.288 Sum_probs=92.9
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCC
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 303 (472)
-+.|+++++++|.++... ..++ -.|.++.|++++|.|...+. ++. +++|..||+++|
T Consensus 283 Wq~LtelDLS~N~I~~iD-----ESvK--L~Pkir~L~lS~N~i~~v~n--La~--------------L~~L~~LDLS~N 339 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQID-----ESVK--LAPKLRRLILSQNRIRTVQN--LAE--------------LPQLQLLDLSGN 339 (490)
T ss_pred Hhhhhhccccccchhhhh-----hhhh--hccceeEEeccccceeeehh--hhh--------------cccceEeecccc
Confidence 378999999999884321 1111 12689999999999875443 222 468999999999
Q ss_pred CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEE
Q psy3611 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383 (472)
Q Consensus 304 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 383 (472)
.+.. +..|-..+.+++.|.++.|.|.+- .++..+-+|..||+++|+|.. ...+ ..++++|.|+.+.
T Consensus 340 ~Ls~-----~~Gwh~KLGNIKtL~La~N~iE~L------SGL~KLYSLvnLDl~~N~Ie~--ldeV-~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 340 LLAE-----CVGWHLKLGNIKTLKLAQNKIETL------SGLRKLYSLVNLDLSSNQIEE--LDEV-NHIGNLPCLETLR 405 (490)
T ss_pred hhHh-----hhhhHhhhcCEeeeehhhhhHhhh------hhhHhhhhheeccccccchhh--HHHh-cccccccHHHHHh
Confidence 8874 445556788999999999887532 345566788999999998873 2222 5677888888888
Q ss_pred cCCCCCC
Q psy3611 384 LGDCLLK 390 (472)
Q Consensus 384 l~~~~i~ 390 (472)
+-+|.+.
T Consensus 406 L~~NPl~ 412 (490)
T KOG1259|consen 406 LTGNPLA 412 (490)
T ss_pred hcCCCcc
Confidence 8888775
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=1.9e-09 Score=92.18 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=57.2
Q ss_pred hhhcCCccEEeccCCCcchhhHHHHHHhhh-cCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHH
Q psy3611 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFE-ENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 84 (472)
Q Consensus 6 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~ 84 (472)
+.++..+++|+|++|.|.. +. .+. .+.+|+.|++++|.+... +.+..+++|++|++++|.+++.+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-----Ie-~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~-- 80 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-----IE-NLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSIS-- 80 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-C--
T ss_pred ccccccccccccccccccc-----cc-chhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCccc--
Confidence 3356678999999998884 33 333 568999999999998632 34677899999999999998642
Q ss_pred HHHHHh-hcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCC
Q psy3611 85 SIAKYL-TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 162 (472)
Q Consensus 85 ~l~~~l-~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~ 162 (472)
+.+ ..+++|+.|++++|.|.+-+. ...+..+++|+.|++.+|.+... ..+-...+..+|+|+.|....+..
T Consensus 81 ---~~l~~~lp~L~~L~L~~N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 81 ---EGLDKNLPNLQELYLSNNKISDLNE---LEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp ---HHHHHH-TT--EEE-TTS---SCCC---CGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEETTS
T ss_pred ---cchHHhCCcCCEEECcCCcCCChHH---hHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEccH
Confidence 222 347899999999999986321 24567899999999999998754 444555567789998888766654
No 38
>KOG1259|consensus
Probab=98.69 E-value=6e-09 Score=93.40 Aligned_cols=127 Identities=22% Similarity=0.267 Sum_probs=93.7
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCc-ccHHHHHHH
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITY-KGAIPLGQA 372 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~-~~~~~l~~~ 372 (472)
.|+.+|+++|.+.. +.+.+.-.+.++.|++++|.|...+ .+..+++|+.||+++|.++. +|+.
T Consensus 285 ~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v~------nLa~L~~L~~LDLS~N~Ls~~~Gwh----- 348 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTVQ------NLAELPQLQLLDLSGNLLAECVGWH----- 348 (490)
T ss_pred hhhhccccccchhh-----hhhhhhhccceeEEeccccceeeeh------hhhhcccceEeecccchhHhhhhhH-----
Confidence 57788888887763 6666677788888888888887433 35567888888888887763 2332
Q ss_pred hcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 373 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
.++.+++.|.+++|.|.+ + ..+.+..+|..||+++|+|..-. -+..++++|.|+.+.+.+|++.
T Consensus 349 -~KLGNIKtL~La~N~iE~-----L-SGL~KLYSLvnLDl~~N~Ie~ld---eV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 349 -LKLGNIKTLKLAQNKIET-----L-SGLRKLYSLVNLDLSSNQIEELD---EVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred -hhhcCEeeeehhhhhHhh-----h-hhhHhhhhheeccccccchhhHH---HhcccccccHHHHHhhcCCCcc
Confidence 246678888888888764 2 44566688888999998887642 3667788888999999888863
No 39
>KOG2982|consensus
Probab=98.58 E-value=6.5e-08 Score=86.81 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=37.8
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCc
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITY 363 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~ 363 (472)
|++..+.+..+.+.+...+ +.....+.+.-|+++.++|.+.. -.+.+.++++|..|.++++.+.+
T Consensus 199 pnv~sv~v~e~PlK~~s~e---k~se~~p~~~~LnL~~~~idswa---svD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSE---KGSEPFPSLSCLNLGANNIDSWA---SVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccchheeeecCcccchhhc---ccCCCCCcchhhhhcccccccHH---HHHHHcCCchhheeeccCCcccc
Confidence 5666667766666543211 22334555666677777776432 23556667777777777776653
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.46 E-value=1.4e-07 Score=93.43 Aligned_cols=171 Identities=23% Similarity=0.319 Sum_probs=115.1
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCC-cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSP-LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGI 333 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i 333 (472)
+.++.|++.++.+++... ..+.. ++|+.|++++|.+.. ++..+..+++|+.|++++|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~---------------~~~~~~~nL~~L~l~~N~i~~-----l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 116 TNLTSLDLDNNNITDIPP---------------LIGLLKSNLKELDLSDNKIES-----LPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred cceeEEecCCcccccCcc---------------ccccchhhcccccccccchhh-----hhhhhhccccccccccCCchh
Confidence 468888888888763321 11112 268889998888874 556677888999999999987
Q ss_pred ChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECc
Q psy3611 334 YHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT 413 (472)
Q Consensus 334 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~ 413 (472)
.+ ++......+.|+.|++++|.+.+ ++........|++|++++|.+.. ....+...+.+..+.+.
T Consensus 176 ~~-----l~~~~~~~~~L~~L~ls~N~i~~-----l~~~~~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 176 SD-----LPKLLSNLSNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELS 240 (394)
T ss_pred hh-----hhhhhhhhhhhhheeccCCcccc-----CchhhhhhhhhhhhhhcCCccee-----cchhhhhcccccccccC
Confidence 73 34444367788899999988874 22333344558888888885332 34555666777777777
Q ss_pred CCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 414 CNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 414 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+|++.. ++..+...+.++.|++++|.+++... +....+++.|+++++
T Consensus 241 ~n~~~~-----~~~~~~~l~~l~~L~~s~n~i~~i~~------~~~~~~l~~L~~s~n 287 (394)
T COG4886 241 NNKLED-----LPESIGNLSNLETLDLSNNQISSISS------LGSLTNLRELDLSGN 287 (394)
T ss_pred Cceeee-----ccchhccccccceecccccccccccc------ccccCccCEEeccCc
Confidence 777765 35566667778888888887764322 445677777777764
No 41
>KOG1947|consensus
Probab=98.42 E-value=3e-06 Score=86.31 Aligned_cols=189 Identities=22% Similarity=0.259 Sum_probs=107.2
Q ss_pred hcCCcccEEeCCCCC-CChhhHHHHHHHHhccCCCcceEEEeeCCC-CChhHHHHHHHHHHhhcccCcCCCCCcceeEEE
Q psy3611 222 KTGARLVELDLSDNA-FGPIGVEGLADLLRSSCCFALEELKLNNNG-LGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299 (472)
Q Consensus 222 ~~~~~L~~L~l~~~~-l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~ 299 (472)
..+++|+.|+++++. +++.+...++.. |++|++|.+.+|. +++.+...++.. |+.|++|+
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~-----c~~L~~L~l~~c~~lt~~gl~~i~~~-------------~~~L~~L~ 301 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASR-----CPNLETLSLSNCSNLTDEGLVSIAER-------------CPSLRELD 301 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhh-----CCCcceEccCCCCccchhHHHHHHHh-------------cCcccEEe
Confidence 445788888888887 677777777763 6788888887777 788888777664 56688888
Q ss_pred cCCCCCC-hhhHHHHHHHHhcCCCccEEeCCCCC----CChhHHH---------HHHHHHhcCCCccEEEccCCCCCccc
Q psy3611 300 AGRNRLE-NEGAKMLAAVFKKLKTLERVEMPQNG----IYHVGIT---------ALSDAFEENKNLRHLNLNDNTITYKG 365 (472)
Q Consensus 300 l~~~~l~-~~~~~~l~~~~~~~~~L~~L~l~~~~----i~~~~~~---------~l~~~l~~~~~L~~L~l~~n~l~~~~ 365 (472)
++.+... +.+ +......+++++.|.+.... +++.++. .....+..++.++.+.+..+...+.|
T Consensus 302 l~~c~~~~d~~---l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~ 378 (482)
T KOG1947|consen 302 LSGCHGLTDSG---LEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLG 378 (482)
T ss_pred eecCccchHHH---HHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcc
Confidence 8877654 333 33334457776666544432 3322211 11123345666666666666544433
Q ss_pred HHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCC-CCchhHHHHHHHHhcCCcccEEEccCCC
Q psy3611 366 AIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE-ISVQGGLDLVKAMKNKTKLKQINVSENQ 444 (472)
Q Consensus 366 ~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 444 (472)
. ...+.+++.| + .+ +......+..++.|+++.+. .+..++...... +..++.+++.+++
T Consensus 379 ~---~~~l~gc~~l----------~-~~---l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~---~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 379 L---ELSLRGCPNL----------T-ES---LELRLCRSDSLRVLNLSDCRLVTDKGLRCLADS---CSNLKDLDLSGCR 438 (482)
T ss_pred h---HHHhcCCccc----------c-hH---HHHHhccCCccceEecccCccccccchHHHhhh---hhccccCCccCcc
Confidence 2 1233334433 1 11 22222223337788887774 444433222221 6677778887776
Q ss_pred -CChhHHH
Q psy3611 445 -FGEEGVE 451 (472)
Q Consensus 445 -i~~~~~~ 451 (472)
++.....
T Consensus 439 ~~~~~~~~ 446 (482)
T KOG1947|consen 439 VITLKSLE 446 (482)
T ss_pred cccchhhh
Confidence 4444433
No 42
>KOG2982|consensus
Probab=98.41 E-value=4e-07 Score=81.83 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=31.5
Q ss_pred CCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCC
Q psy3611 320 LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLK 390 (472)
Q Consensus 320 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 390 (472)
++++..+.+..|.+.+.. -.+.....|.+--|+++.++|+ .+.++ +.+.+++.|..|.+..+.+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s---~ek~se~~p~~~~LnL~~~~id--swasv-D~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTES---SEKGSEPFPSLSCLNLGANNID--SWASV-DALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchh---hcccCCCCCcchhhhhcccccc--cHHHH-HHHcCCchhheeeccCCccc
Confidence 455555555555554331 1233334445555555555554 22222 45555555555555555543
No 43
>KOG3665|consensus
Probab=98.35 E-value=2.6e-06 Score=88.81 Aligned_cols=208 Identities=19% Similarity=0.168 Sum_probs=128.2
Q ss_pred cccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHH---------HHHHHHHhhcccCcCCCCCccee
Q psy3611 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCK---------LLSKALHDCYESSKKEGSPLALK 296 (472)
Q Consensus 226 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~---------~l~~~l~~~~~~~~~~~~~~~L~ 296 (472)
++.++++.+........+.+-. ..|+++.+.+......... .+...+.+.. -.+|+
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~-------~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~s--------r~nL~ 125 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRK-------QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEES--------RQNLQ 125 (699)
T ss_pred eeEEeeccceecchhHHHHHhh-------ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHH--------HHhhh
Confidence 5666777666665554444322 2477777765443211111 1122222221 14789
Q ss_pred EEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCC
Q psy3611 297 VFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 376 (472)
Q Consensus 297 ~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~ 376 (472)
+|++++......| +..+.-..+|+|++|.+++-.+.... +.+...+.|+|..||+++..+++- ..++.+
T Consensus 126 ~LdI~G~~~~s~~--W~~kig~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl------~GIS~L 194 (699)
T KOG3665|consen 126 HLDISGSELFSNG--WPKKIGTMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL------SGISRL 194 (699)
T ss_pred hcCccccchhhcc--HHHHHhhhCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc------HHHhcc
Confidence 9999887655432 22233346889999999987776443 445555788999999999888742 567788
Q ss_pred CCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchh--HHHHHHHHhcCCcccEEEccCCCCChhHHHHHH
Q psy3611 377 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG--GLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 454 (472)
Q Consensus 377 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~ 454 (472)
++|+.|.+.+-.+.... -...+..+++|+.||+|...-.... +.-..+.-..+|.|+.||.+++.+.....+.+.
T Consensus 195 knLq~L~mrnLe~e~~~---~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQ---DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL 271 (699)
T ss_pred ccHHHHhccCCCCCchh---hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence 88888888777665421 1244556789999999876544332 233344445688999999998888776666555
Q ss_pred HHHHhCCceeE
Q psy3611 455 KLMKSFGMAAA 465 (472)
Q Consensus 455 ~~l~~~~~L~~ 465 (472)
. ..|+|+.
T Consensus 272 ~---sH~~L~~ 279 (699)
T KOG3665|consen 272 N---SHPNLQQ 279 (699)
T ss_pred H---hCccHhh
Confidence 4 4554443
No 44
>KOG1859|consensus
Probab=98.33 E-value=9.7e-08 Score=95.35 Aligned_cols=126 Identities=21% Similarity=0.309 Sum_probs=72.2
Q ss_pred eeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhc
Q psy3611 295 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 374 (472)
Q Consensus 295 L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~ 374 (472)
|...+.+.|.+. .+.+++.-++.+++|++++|++++. +++..++.|+.|||+.|.+.. +..+ ...
T Consensus 166 L~~a~fsyN~L~-----~mD~SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~--vp~l--~~~ 230 (1096)
T KOG1859|consen 166 LATASFSYNRLV-----LMDESLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRH--VPQL--SMV 230 (1096)
T ss_pred HhhhhcchhhHH-----hHHHHHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhcc--cccc--chh
Confidence 334444555444 2344444556677777777776532 355567777777777776652 1111 011
Q ss_pred CCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCC
Q psy3611 375 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445 (472)
Q Consensus 375 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 445 (472)
.|. |+.|.+.+|.+++ + ..++++++|+.||+++|.|.+-. =...+..+..|+.|.+.||++
T Consensus 231 gc~-L~~L~lrnN~l~t-----L-~gie~LksL~~LDlsyNll~~hs---eL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 231 GCK-LQLLNLRNNALTT-----L-RGIENLKSLYGLDLSYNLLSEHS---ELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhh-heeeeecccHHHh-----h-hhHHhhhhhhccchhHhhhhcch---hhhHHHHHHHHHHHhhcCCcc
Confidence 223 7777777777664 2 33456677777777777665421 123344556777777777775
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=1.6e-06 Score=90.44 Aligned_cols=93 Identities=24% Similarity=0.374 Sum_probs=72.4
Q ss_pred CCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhh
Q psy3611 40 LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 119 (472)
Q Consensus 40 L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~ 119 (472)
++.|+|++|.+. +.++ ..+..+++|+.|+|++|.+.+ .++..++.+++|+.|+|++|.++. .++..+.
T Consensus 420 v~~L~L~~n~L~--g~ip--~~i~~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg----~iP~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLR--GFIP--NDISKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNG----SIPESLG 487 (623)
T ss_pred EEEEECCCCCcc--ccCC--HHHhCCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCC----CCchHHh
Confidence 677888888774 6666 567888888888888888876 466667778888888888888876 4677778
Q ss_pred hCCCccEEEecCCcCChhhHHHHHH
Q psy3611 120 NKTKLKQINVSENQFGEEGVEEMEK 144 (472)
Q Consensus 120 ~~~~L~~L~l~~~~i~~~~~~~l~~ 144 (472)
.+++|+.|++++|.+.+..|..+..
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhh
Confidence 8888888888888888777766654
No 46
>KOG1947|consensus
Probab=98.18 E-value=7.4e-06 Score=83.44 Aligned_cols=120 Identities=20% Similarity=0.252 Sum_probs=81.5
Q ss_pred HhhhcCCccEEeccCC-CcchhhHHHHHHhhhcCCCCCeeeCCCC-c-cCccchHHHHHHhccCCCCcEEeccCcc-ccc
Q psy3611 5 VFKKLKTLEHVEMPQN-GIYHVGITALSDAFEENKKLRHLNLNDN-T-ITYKGAIPLGQALSKLPSLAILNLGDCL-LKS 80 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~~~~~L~~L~l~~~-~-~~~~~~~~l~~~l~~~~~L~~L~ls~~~-l~~ 80 (472)
....++.|+.+.+.++ .+.+.+ +......+++|+.|+++++ . +...+.... .....+++|+.|+++.+. +++
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLLL-LLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred HHhhCchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHhh-hhhhhcCCcCccchhhhhccCc
Confidence 3445788888888877 455433 4445566788999988873 2 222222222 345667888899998887 787
Q ss_pred hhHHHHHHHhhcCCcccEEECcCCc-cCcchHHHHHHHhhhCCCccEEEecCCcC
Q psy3611 81 AGASSIAKYLTDNTTLEDVNLTCNE-ISVQGGLDLVKAMKNKTKLKQINVSENQF 134 (472)
Q Consensus 81 ~~~~~l~~~l~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~l~~~~i 134 (472)
.++..++.. ++.|+.|.+.+|. +++.|...+. ..++.|++|++++|..
T Consensus 259 ~~l~~l~~~---c~~L~~L~l~~c~~lt~~gl~~i~---~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 259 IGLSALASR---CPNLETLSLSNCSNLTDEGLVSIA---ERCPSLRELDLSGCHG 307 (482)
T ss_pred hhHHHHHhh---CCCcceEccCCCCccchhHHHHHH---HhcCcccEEeeecCcc
Confidence 766666554 7788888888887 7877655444 5577899999988743
No 47
>KOG3665|consensus
Probab=98.17 E-value=6.8e-06 Score=85.72 Aligned_cols=113 Identities=14% Similarity=0.231 Sum_probs=80.0
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
.+|++|++++...-..+ |+.+.-..+|.|+.|.+.+-.+..+. +.....++|+|..||+|++.+++. ..
T Consensus 122 ~nL~~LdI~G~~~~s~~--W~~kig~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl------~G 190 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNG--WPKKIGTMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL------SG 190 (699)
T ss_pred HhhhhcCccccchhhcc--HHHHHhhhCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc------HH
Confidence 46888888887544333 55555566799999998887765443 335568888999999999888762 55
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCCh
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 136 (472)
++++++|+.|.+.+-.+... .-...+-++++|++||+|......
T Consensus 191 IS~LknLq~L~mrnLe~e~~---~~l~~LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESY---QDLIDLFNLKKLRVLDISRDKNND 234 (699)
T ss_pred HhccccHHHHhccCCCCCch---hhHHHHhcccCCCeeecccccccc
Confidence 67788999988888777652 122334468899999998765443
No 48
>KOG1859|consensus
Probab=98.14 E-value=7.5e-07 Score=89.21 Aligned_cols=136 Identities=22% Similarity=0.286 Sum_probs=73.8
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 372 (472)
+.++.|+|++|+++.. . .+..++.|++||+++|.+.... .+. ..++. |+.|.+.+|.++. + ..
T Consensus 187 ~ale~LnLshNk~~~v-----~-~Lr~l~~LkhLDlsyN~L~~vp--~l~--~~gc~-L~~L~lrnN~l~t-----L-~g 249 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKV-----D-NLRRLPKLKHLDLSYNCLRHVP--QLS--MVGCK-LQLLNLRNNALTT-----L-RG 249 (1096)
T ss_pred HHhhhhccchhhhhhh-----H-HHHhcccccccccccchhcccc--ccc--hhhhh-heeeeecccHHHh-----h-hh
Confidence 4577777887777642 1 5566777888888877765322 221 12333 7777777776651 1 34
Q ss_pred hcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchh--HHHHHHHHhcCCcccEEEccCCCCChh
Q psy3611 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG--GLDLVKAMKNKTKLKQINVSENQFGEE 448 (472)
Q Consensus 373 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~l~~n~i~~~ 448 (472)
+.++.+|+.||++.|.+.+-.- + .-+..+..|+.|.|+||.+--.. -.+.+.-+..+..-..+-+++-.++.+
T Consensus 250 ie~LksL~~LDlsyNll~~hse--L-~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDgk~l~~~ 324 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSE--L-EPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDGKALGGR 324 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchh--h-hHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecceeccch
Confidence 5566777777877776654211 1 11122355677777777543211 111222232233334455665555443
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.13 E-value=1.2e-06 Score=61.43 Aligned_cols=61 Identities=31% Similarity=0.546 Sum_probs=40.1
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccc
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 78 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l 78 (472)
|+|++|++++|.++.-. +..|..+++|++|++++|.+. ...+ .+|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~----~~~f~~l~~L~~L~l~~N~l~--~i~~--~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIP----PDSFSNLPNLETLDLSNNNLT--SIPP--DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEEC----TTTTTTGTTESEEEETSSSES--EEET--TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccC----HHHHcCCCCCCEeEccCCccC--ccCH--HHHcCCCCCCEEeCcCCcC
Confidence 46777777777776521 345667777777777777764 2333 4567777777777777754
No 50
>KOG0531|consensus
Probab=98.13 E-value=2.3e-07 Score=92.26 Aligned_cols=85 Identities=29% Similarity=0.345 Sum_probs=39.3
Q ss_pred hhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHH
Q psy3611 34 FEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLD 113 (472)
Q Consensus 34 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~ 113 (472)
+..+++|+.|++.+|.+... . ..+..+++|++|++++|.|++. ..+..++.|+.|++.+|.+..
T Consensus 91 l~~~~~l~~l~l~~n~i~~i---~--~~l~~~~~L~~L~ls~N~I~~i------~~l~~l~~L~~L~l~~N~i~~----- 154 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI---E--NLLSSLVNLQVLDLSFNKITKL------EGLSTLTLLKELNLSGNLISD----- 154 (414)
T ss_pred cccccceeeeeccccchhhc---c--cchhhhhcchheeccccccccc------cchhhccchhhheeccCcchh-----
Confidence 34445555555555554211 1 1134455555555555555432 122333445555555555553
Q ss_pred HHHHhhhCCCccEEEecCCcCC
Q psy3611 114 LVKAMKNKTKLKQINVSENQFG 135 (472)
Q Consensus 114 l~~~l~~~~~L~~L~l~~~~i~ 135 (472)
...+..+..|+.+++++|.+.
T Consensus 155 -~~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 155 -ISGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred -ccCCccchhhhcccCCcchhh
Confidence 122233445555555555444
No 51
>KOG0532|consensus
Probab=98.09 E-value=1.7e-07 Score=91.31 Aligned_cols=104 Identities=24% Similarity=0.308 Sum_probs=54.4
Q ss_pred eeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhc
Q psy3611 295 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 374 (472)
Q Consensus 295 L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~ 374 (472)
|+.|-+++|++.. +|+.+....+|.+|+.+.|.+. .++..+.++.+|+.|.+..|++.+ +++.+.
T Consensus 145 Lkvli~sNNkl~~-----lp~~ig~~~tl~~ld~s~nei~-----slpsql~~l~slr~l~vrRn~l~~-----lp~El~ 209 (722)
T KOG0532|consen 145 LKVLIVSNNKLTS-----LPEEIGLLPTLAHLDVSKNEIQ-----SLPSQLGYLTSLRDLNVRRNHLED-----LPEELC 209 (722)
T ss_pred ceeEEEecCcccc-----CCcccccchhHHHhhhhhhhhh-----hchHHhhhHHHHHHHHHhhhhhhh-----CCHHHh
Confidence 5555555555553 4444444455555555555543 344445555555555555555431 333333
Q ss_pred CCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 375 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 375 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
.-.|..||++.|++.. +|..+..+.+|++|-|++|.+..
T Consensus 210 -~LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 210 -SLPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred -CCceeeeecccCceee-----cchhhhhhhhheeeeeccCCCCC
Confidence 2235555555555554 55555555555555555555544
No 52
>KOG0532|consensus
Probab=98.08 E-value=1.3e-07 Score=92.07 Aligned_cols=140 Identities=23% Similarity=0.277 Sum_probs=106.3
Q ss_pred CCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHH
Q psy3611 289 EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIP 368 (472)
Q Consensus 289 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~ 368 (472)
++.+..|+.++++.|++.. +|..+. .--|+.|-+++|+++ .+++.++..++|..||.+.|.+. .
T Consensus 117 i~~L~~lt~l~ls~NqlS~-----lp~~lC-~lpLkvli~sNNkl~-----~lp~~ig~~~tl~~ld~s~nei~-----s 180 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLSH-----LPDGLC-DLPLKVLIVSNNKLT-----SLPEEIGLLPTLAHLDVSKNEIQ-----S 180 (722)
T ss_pred hhhhhHHHHhhhccchhhc-----CChhhh-cCcceeEEEecCccc-----cCCcccccchhHHHhhhhhhhhh-----h
Confidence 3444567888888888774 443322 235788888888877 45666666778888888888765 3
Q ss_pred HHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChh
Q psy3611 369 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 448 (472)
Q Consensus 369 l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 448 (472)
++..+..+.+|+.|.+..|.+.+ ++..+. .=.|..||+++|+|.. +|..+..++.|++|-|.+|++.+-
T Consensus 181 lpsql~~l~slr~l~vrRn~l~~-----lp~El~-~LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVRRNHLED-----LPEELC-SLPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred chHHhhhHHHHHHHHHhhhhhhh-----CCHHHh-CCceeeeecccCceee-----cchhhhhhhhheeeeeccCCCCCC
Confidence 55667778888888888888765 777777 4568899999999998 899999999999999999999876
Q ss_pred HHHHHHH
Q psy3611 449 GVEEMEK 455 (472)
Q Consensus 449 ~~~~l~~ 455 (472)
-++.+..
T Consensus 250 PAqIC~k 256 (722)
T KOG0532|consen 250 PAQICEK 256 (722)
T ss_pred hHHHHhc
Confidence 6665543
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.03 E-value=2.7e-06 Score=84.36 Aligned_cols=149 Identities=21% Similarity=0.344 Sum_probs=116.5
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCC-CccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLK-TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~-~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
+.++.+++.++.+.+ ++....... +|+.|++++|.+. .++..+..+++|+.|++++|++.+ ++.
T Consensus 116 ~~l~~L~l~~n~i~~-----i~~~~~~~~~nL~~L~l~~N~i~-----~l~~~~~~l~~L~~L~l~~N~l~~-----l~~ 180 (394)
T COG4886 116 TNLTSLDLDNNNITD-----IPPLIGLLKSNLKELDLSDNKIE-----SLPSPLRNLPNLKNLDLSFNDLSD-----LPK 180 (394)
T ss_pred cceeEEecCCccccc-----Cccccccchhhcccccccccchh-----hhhhhhhccccccccccCCchhhh-----hhh
Confidence 469999999999885 666666664 9999999999987 444677789999999999999884 333
Q ss_pred HhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHH
Q psy3611 372 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 451 (472)
Q Consensus 372 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~ 451 (472)
.....+.|+.|++++|.+.+ ++........|+.+.+++|.+.. .+..+...+.+..+.+.+|++...
T Consensus 181 ~~~~~~~L~~L~ls~N~i~~-----l~~~~~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~~~~~--- 247 (394)
T COG4886 181 LLSNLSNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSNNKLEDL--- 247 (394)
T ss_pred hhhhhhhhhheeccCCcccc-----CchhhhhhhhhhhhhhcCCccee-----cchhhhhcccccccccCCceeeec---
Confidence 33367899999999999987 56554455779999999995333 467788888999999888887532
Q ss_pred HHHHHHHhCCceeEEecCCC
Q psy3611 452 EMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 452 ~l~~~l~~~~~L~~L~l~~~ 471 (472)
...+...+.++.|+++++
T Consensus 248 --~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 248 --PESIGNLSNLETLDLSNN 265 (394)
T ss_pred --cchhccccccceeccccc
Confidence 445566778999998876
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.01 E-value=6.4e-06 Score=85.99 Aligned_cols=105 Identities=25% Similarity=0.414 Sum_probs=58.5
Q ss_pred ccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhh
Q psy3611 12 LEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 91 (472)
Q Consensus 12 L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~ 91 (472)
++.|+|++|.+.. .++..+..+++|+.|+|++|.+. +.+| ..+..+++|+.|++++|.+.+ .++..++
T Consensus 420 v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~--g~iP--~~~~~l~~L~~LdLs~N~lsg----~iP~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIR--GNIP--PSLGSITSLEVLDLSYNSFNG----SIPESLG 487 (623)
T ss_pred EEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCccc--CcCC--hHHhCCCCCCEEECCCCCCCC----CCchHHh
Confidence 4556666665543 44555666666666666666553 4444 445666666666666666655 2455555
Q ss_pred cCCcccEEECcCCccCcchHHHHHHHhhhC-CCccEEEecCC
Q psy3611 92 DNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSEN 132 (472)
Q Consensus 92 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~-~~L~~L~l~~~ 132 (472)
.+++|+.|+|++|.++. .+|..+... .++..+++.+|
T Consensus 488 ~L~~L~~L~Ls~N~l~g----~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 488 QLTSLRILNLNGNSLSG----RVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred cCCCCCEEECcCCcccc----cCChHHhhccccCceEEecCC
Confidence 56666666666666654 244443321 23444555544
No 55
>KOG0531|consensus
Probab=98.01 E-value=8e-07 Score=88.46 Aligned_cols=109 Identities=27% Similarity=0.353 Sum_probs=84.7
Q ss_pred hhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHH
Q psy3611 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85 (472)
Q Consensus 6 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~ 85 (472)
+..+++|+.|++.+|.|.. +...+..+++|++|++++|.|+.. ..+..++.|+.|++++|.+.+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~I~~i------~~l~~l~~L~~L~l~~N~i~~~---- 155 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNKITKL------EGLSTLTLLKELNLSGNLISDI---- 155 (414)
T ss_pred cccccceeeeeccccchhh-----cccchhhhhcchheeccccccccc------cchhhccchhhheeccCcchhc----
Confidence 5568899999999998885 344377789999999999998633 2345566799999999999853
Q ss_pred HHHHhhcCCcccEEECcCCccCcchHHHHHHH-hhhCCCccEEEecCCcCCh
Q psy3611 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA-MKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 86 l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~-l~~~~~L~~L~l~~~~i~~ 136 (472)
..+..++.|+.+++++|.+.. +... +..+.+++.+.+.+|.+..
T Consensus 156 --~~~~~l~~L~~l~l~~n~i~~-----ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 156 --SGLESLKSLKLLDLSYNRIVD-----IENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred --cCCccchhhhcccCCcchhhh-----hhhhhhhhccchHHHhccCCchhc
Confidence 223447899999999999985 3332 4678899999999987754
No 56
>KOG4658|consensus
Probab=97.94 E-value=4.4e-06 Score=89.40 Aligned_cols=109 Identities=17% Similarity=0.243 Sum_probs=76.4
Q ss_pred hcCCccEEeccCCC--cchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHH
Q psy3611 8 KLKTLEHVEMPQNG--IYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85 (472)
Q Consensus 8 ~~~~L~~L~L~~~~--l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~ 85 (472)
.++.|++|-+.+|. +.. ....+|..+|.|++||+++|.- .+.+| ..++.+-+|++|++++..+. .
T Consensus 543 ~~~~L~tLll~~n~~~l~~----is~~ff~~m~~LrVLDLs~~~~--l~~LP--~~I~~Li~LryL~L~~t~I~-----~ 609 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLE----ISGEFFRSLPLLRVLDLSGNSS--LSKLP--SSIGELVHLRYLDLSDTGIS-----H 609 (889)
T ss_pred CCCccceEEEeecchhhhh----cCHHHHhhCcceEEEECCCCCc--cCcCC--hHHhhhhhhhcccccCCCcc-----c
Confidence 36678888777774 222 2244577788888888887642 25666 67888888888888887776 5
Q ss_pred HHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCc
Q psy3611 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 133 (472)
Q Consensus 86 l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~ 133 (472)
+|..+++++.|.+|++..+.... .++.....+.+|++|.+....
T Consensus 610 LP~~l~~Lk~L~~Lnl~~~~~l~----~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 610 LPSGLGNLKKLIYLNLEVTGRLE----SIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cchHHHHHHhhheeccccccccc----cccchhhhcccccEEEeeccc
Confidence 78888888888888888775443 234455557788888776543
No 57
>KOG4658|consensus
Probab=97.89 E-value=5.1e-06 Score=88.94 Aligned_cols=86 Identities=28% Similarity=0.306 Sum_probs=58.1
Q ss_pred cCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHH
Q psy3611 36 ENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLV 115 (472)
Q Consensus 36 ~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 115 (472)
.++.|+.|-+..+.. .....+. ..|..++.|++||+++|.=.+ .+|..++.+-+|++|+++++.+. .+|
T Consensus 543 ~~~~L~tLll~~n~~-~l~~is~-~ff~~m~~LrVLDLs~~~~l~----~LP~~I~~Li~LryL~L~~t~I~-----~LP 611 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSD-WLLEISG-EFFRSLPLLRVLDLSGNSSLS----KLPSSIGELVHLRYLDLSDTGIS-----HLP 611 (889)
T ss_pred CCCccceEEEeecch-hhhhcCH-HHHhhCcceEEEECCCCCccC----cCChHHhhhhhhhcccccCCCcc-----ccc
Confidence 455677777766641 0011221 346778888888888764333 47777777788888888888877 478
Q ss_pred HHhhhCCCccEEEecCC
Q psy3611 116 KAMKNKTKLKQINVSEN 132 (472)
Q Consensus 116 ~~l~~~~~L~~L~l~~~ 132 (472)
..+.+++.|.+|++..+
T Consensus 612 ~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVT 628 (889)
T ss_pred hHHHHHHhhheeccccc
Confidence 88888888888887765
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.86 E-value=4e-06 Score=58.67 Aligned_cols=11 Identities=45% Similarity=0.739 Sum_probs=4.0
Q ss_pred CCccEEEccCC
Q psy3611 349 KNLRHLNLNDN 359 (472)
Q Consensus 349 ~~L~~L~l~~n 359 (472)
++|++|++++|
T Consensus 25 ~~L~~L~l~~N 35 (61)
T PF13855_consen 25 PNLETLDLSNN 35 (61)
T ss_dssp TTESEEEETSS
T ss_pred CCCCEeEccCC
Confidence 33333333333
No 59
>KOG4242|consensus
Probab=97.78 E-value=1.8e-05 Score=75.74 Aligned_cols=190 Identities=17% Similarity=0.060 Sum_probs=116.3
Q ss_pred cceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCCh
Q psy3611 256 ALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYH 335 (472)
Q Consensus 256 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~ 335 (472)
++ .|++..+....+....+.-.+..... +.=-++|++.|...+.. ..++-..-..+++|....|.+..
T Consensus 301 sg-hln~~~~~~psE~lks~LLgla~ne~--------t~g~rldl~~cp~~~a~---vleaci~g~R~q~l~~rdnnldg 368 (553)
T KOG4242|consen 301 SG-HLNSRPRYTPSEKLKSMLLGLAENEA--------TLGARLDLRRCPLERAE---VLEACIFGQRVQVLLQRDNNLDG 368 (553)
T ss_pred cc-ccccccccCchhhhhhhhcccccccc--------cccccCChhhccccccc---hhhccccceeeeEeecccccccc
Confidence 45 66666666665555554433333221 11123555555554321 11222222357888888877664
Q ss_pred hHHHHHHHHHhcCCCccEEEccCCCC---CcccHHH--HHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEE
Q psy3611 336 VGITALSDAFEENKNLRHLNLNDNTI---TYKGAIP--LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV 410 (472)
Q Consensus 336 ~~~~~l~~~l~~~~~L~~L~l~~n~l---~~~~~~~--l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L 410 (472)
.+-... .++..++.+.+++.+-.. .+.+... +...-.....+..+.++.|..+. +.......+...+++.+|
T Consensus 369 eg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka-~l~s~in~l~stqtl~kl 445 (553)
T KOG4242|consen 369 EGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA-GLESAINKLLSTQTLAKL 445 (553)
T ss_pred cccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccc-cHHHHHHhhccCcccccc
Confidence 432222 455677788888766432 1112111 11111123367888888888775 344455666777999999
Q ss_pred ECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhC
Q psy3611 411 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 460 (472)
Q Consensus 411 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~ 460 (472)
++++|..++.|+..++..++.+.+++.+..+.|.++..+...+...++.+
T Consensus 446 disgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~gl~p~~~~~p~n 495 (553)
T KOG4242|consen 446 DISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPGLGPRNEERPLN 495 (553)
T ss_pred cccCCCcccCCCCcCccccCCCCccCCCCCCCCCccccccchhhhhcccc
Confidence 99999999988888999999888999999999888877777776666655
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=0.0001 Score=47.34 Aligned_cols=36 Identities=31% Similarity=0.514 Sum_probs=20.0
Q ss_pred CCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 406 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
+|+.|++++|.|++ ++..+.++++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCC
Confidence 45666666666655 4444566666666666666554
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.33 E-value=0.00026 Score=45.44 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=15.5
Q ss_pred CCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCC
Q psy3611 378 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 418 (472)
Q Consensus 378 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 418 (472)
+|++|++++|.|++ ++..+..+++|+.|++++|.|+
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444443 3333444444444444444444
No 62
>KOG4579|consensus
Probab=97.31 E-value=6.1e-05 Score=60.32 Aligned_cols=109 Identities=19% Similarity=0.226 Sum_probs=71.1
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHh-cCCCccEEEccCCCCCcccHHHHHHH
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE-ENKNLRHLNLNDNTITYKGAIPLGQA 372 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~-~~~~L~~L~l~~n~l~~~~~~~l~~~ 372 (472)
-+..++++.|++.. +-.....+.....|+..++++|.+. .+++.|. ..|.++.|++++|.+.+ +++.
T Consensus 28 E~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N~fk-----~fp~kft~kf~t~t~lNl~~neisd-----vPeE 95 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDNGFK-----KFPKKFTIKFPTATTLNLANNEISD-----VPEE 95 (177)
T ss_pred HhhhcccccchhhH--HHHHHHHHhCCceEEEEecccchhh-----hCCHHHhhccchhhhhhcchhhhhh-----chHH
Confidence 45667788777652 0112233445567777788888765 3344443 34578888888888774 4455
Q ss_pred hcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 373 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
+..++.|+.|+++.|.+.. +++.+..+.++-.|+..+|.+.+
T Consensus 96 ~Aam~aLr~lNl~~N~l~~-----~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFNPLNA-----EPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred HhhhHHhhhcccccCcccc-----chHHHHHHHhHHHhcCCCCcccc
Confidence 6778888888888888775 45555556777777777776665
No 63
>KOG4579|consensus
Probab=97.31 E-value=0.00012 Score=58.62 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=81.7
Q ss_pred CccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHh-cCCCCCcEEEcCCCCCChHHHHHHHHH
Q psy3611 322 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL-SKLPSLAILNLGDCLLKSAGASSIAKY 400 (472)
Q Consensus 322 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l-~~~~~L~~L~l~~~~i~~~~~~~l~~~ 400 (472)
-+..++++.|.+.. +......+.....|+..++++|.+.+ .++.+ .+++....|++++|.|++ +|..
T Consensus 28 E~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~neisd-----vPeE 95 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDNGFKK-----FPKKFTIKFPTATTLNLANNEISD-----VPEE 95 (177)
T ss_pred HhhhcccccchhhH--HHHHHHHHhCCceEEEEecccchhhh-----CCHHHhhccchhhhhhcchhhhhh-----chHH
Confidence 56678888888752 22445555667778888999997763 23333 345688889999999887 7777
Q ss_pred hhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHH
Q psy3611 401 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 451 (472)
Q Consensus 401 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~ 451 (472)
+..++.|+.++++.|.+.. .+..+..+.++-.|+.-+|.+-.....
T Consensus 96 ~Aam~aLr~lNl~~N~l~~-----~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFNPLNA-----EPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred HhhhHHhhhcccccCcccc-----chHHHHHHHhHHHhcCCCCccccCcHH
Confidence 8888999999999998876 567776677888888888765443333
No 64
>KOG1644|consensus
Probab=97.30 E-value=8.6e-05 Score=63.49 Aligned_cols=128 Identities=17% Similarity=0.215 Sum_probs=73.4
Q ss_pred eeEEEcCCCCCChhhHHHHHHHHh-cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHh
Q psy3611 295 LKVFIAGRNRLENEGAKMLAAVFK-KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373 (472)
Q Consensus 295 L~~L~l~~~~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l 373 (472)
-+.+++.+.++... +-++ .......+++++|.+.. ...|..++.|.+|.++.|.|+..+- ...
T Consensus 21 e~e~~LR~lkip~i------enlg~~~d~~d~iDLtdNdl~~------l~~lp~l~rL~tLll~nNrIt~I~p----~L~ 84 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI------ENLGATLDQFDAIDLTDNDLRK------LDNLPHLPRLHTLLLNNNRITRIDP----DLD 84 (233)
T ss_pred ccccccccccccch------hhccccccccceecccccchhh------cccCCCccccceEEecCCcceeecc----chh
Confidence 46677776665531 1111 23466677788877642 2355567777888888887774221 111
Q ss_pred cCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccC
Q psy3611 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 442 (472)
Q Consensus 374 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 442 (472)
...|+|+.|.+.+|.|..-|- ..-+..|++|+.|.+-+|.+..+..-- .-.+...|+|+.||+.+
T Consensus 85 ~~~p~l~~L~LtnNsi~~l~d---l~pLa~~p~L~~Ltll~Npv~~k~~YR-~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 85 TFLPNLKTLILTNNSIQELGD---LDPLASCPKLEYLTLLGNPVEHKKNYR-LYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhccccceEEecCcchhhhhh---cchhccCCccceeeecCCchhcccCce-eEEEEecCcceEeehhh
Confidence 235677788887777765321 123345677788877777766531100 01344567777777654
No 65
>KOG2123|consensus
Probab=97.20 E-value=0.00012 Score=65.64 Aligned_cols=103 Identities=20% Similarity=0.248 Sum_probs=54.8
Q ss_pred CCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHH
Q psy3611 321 KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400 (472)
Q Consensus 321 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 400 (472)
.+.++|++-+|.++|.. ....|+.|+.|.|+-|+|+ .. ..+..|+.|++|+|..|.|.+.. -...
T Consensus 19 ~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIs--sL----~pl~rCtrLkElYLRkN~I~sld---EL~Y 83 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKIS--SL----APLQRCTRLKELYLRKNCIESLD---ELEY 83 (388)
T ss_pred HHhhhhcccCCCccHHH------HHHhcccceeEEeeccccc--cc----hhHHHHHHHHHHHHHhcccccHH---HHHH
Confidence 35666666666666542 2235666777777776665 21 34455666666666666665422 1234
Q ss_pred hhcCCCCCEEECcCCCCCchhHHH-HHHHHhcCCcccEE
Q psy3611 401 LTDNTTLEDVNLTCNEISVQGGLD-LVKAMKNKTKLKQI 438 (472)
Q Consensus 401 l~~~~~L~~L~L~~n~i~~~~~~~-l~~~l~~~~~L~~L 438 (472)
+.+.++|+.|.|..|.--..++.. =...++-+|+|+.|
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhc
Confidence 455566666666655322221111 12344555666655
No 66
>KOG4242|consensus
Probab=97.10 E-value=0.00029 Score=67.71 Aligned_cols=352 Identities=16% Similarity=0.066 Sum_probs=190.7
Q ss_pred CccEEeccCCCcchhhHHHH--HHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHH
Q psy3611 11 TLEHVEMPQNGIYHVGITAL--SDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 88 (472)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~ 88 (472)
.++.+++.-|.+..+....+ +.....++-+++++++.|.+.+...+.+..-.. -++++.|.+++..+..++.
T Consensus 136 ~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p~~------pl~lr~c~lsskfis~l~~ 209 (553)
T KOG4242|consen 136 PLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQPGN------PLSLRVCELSSKFISKLLI 209 (553)
T ss_pred cCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCCCC------ccchhhhhhhhhHHHHhhh
Confidence 35556666665554333222 223445677899999999987766665432211 2778889888876666652
Q ss_pred HhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhh-HHHHHHHHHhchhhHHhhhccCCCCCCcc
Q psy3611 89 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG-VEEMEKLMKSFGMAAALVLEDDEGECSDE 167 (472)
Q Consensus 89 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~-~~~l~~~l~~~~~l~~L~~~~~~~~~~~~ 167 (472)
.-+ -..+.+++++.|...+.- ............++.++.++..+.-.. ...+...-...-....+..+.+...-..+
T Consensus 210 qsg-~~~lteldls~n~~Kddi-p~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~E 287 (553)
T KOG4242|consen 210 QSG-RLWLTELDLSTNGGKDDI-PRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEE 287 (553)
T ss_pred hhc-cccccccccccCCCCccc-hhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccc
Confidence 212 245788999998877531 122223333446777777766543221 11111100000011222233332222222
Q ss_pred ccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHH
Q psy3611 168 EQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLAD 247 (472)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 247 (472)
.+. .....++.-.++ .|++.++...++.+..+.-
T Consensus 288 gg~---------------------------------------------~~k~~fS~~~sg-hln~~~~~~psE~lks~LL 321 (553)
T KOG4242|consen 288 GGG---------------------------------------------AEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLL 321 (553)
T ss_pred ccc---------------------------------------------ccccccCcCccc-ccccccccCchhhhhhhhc
Confidence 222 000111112344 6667666665555555544
Q ss_pred HHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEe
Q psy3611 248 LLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE 327 (472)
Q Consensus 248 ~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~ 327 (472)
.+..+.-+.=-.+++..|...+. .. +..+.. =..++.+.++.|++.++|.... .+.+.+..+.+.
T Consensus 322 gla~ne~t~g~rldl~~cp~~~a--~v----leaci~-------g~R~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~ 386 (553)
T KOG4242|consen 322 GLAENEATLGARLDLRRCPLERA--EV----LEACIF-------GQRVQVLLQRDNNLDGEGGAVG--KRKQSKSGRILK 386 (553)
T ss_pred ccccccccccccCChhhcccccc--ch----hhcccc-------ceeeeEeecccccccccccccc--ceeecccccccc
Confidence 44333222222344555443221 11 111111 0247888888888877654433 445666777777
Q ss_pred CCCCCC---ChhHHHHHHHHHhcC--CCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhh
Q psy3611 328 MPQNGI---YHVGITALSDAFEEN--KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 402 (472)
Q Consensus 328 l~~~~i---~~~~~~~l~~~l~~~--~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~ 402 (472)
+++-.. -+.+........... --+..+.++.+.... +.......+...+.++.|++++|...+.|+.-++.++.
T Consensus 387 agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka-~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq 465 (553)
T KOG4242|consen 387 AGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA-GLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQ 465 (553)
T ss_pred ccccCCceeccccccchhhhhhhcccccccCcccCCCcccc-cHHHHHHhhccCcccccccccCCCcccCCCCcCccccC
Confidence 765332 111211112222222 246788888887764 44445566777788999999999888888777888888
Q ss_pred cCCCCCEEECcCCCCCchhHHHHHHHHhcC
Q psy3611 403 DNTTLEDVNLTCNEISVQGGLDLVKAMKNK 432 (472)
Q Consensus 403 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 432 (472)
.+..++....+.|.++..|...+...+..+
T Consensus 466 ~n~rlr~ipds~n~p~~~gl~p~~~~~p~n 495 (553)
T KOG4242|consen 466 SNCRLRPIPDSLNLPEDPGLGPRNEERPLN 495 (553)
T ss_pred CCCccCCCCCCCCCccccccchhhhhcccc
Confidence 888888888888888888765555555443
No 67
>KOG2123|consensus
Probab=96.86 E-value=0.00034 Score=62.84 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=35.6
Q ss_pred CccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHh
Q psy3611 11 TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90 (472)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l 90 (472)
+.+.|++-+|++++ ......++.|++|.|+-|.|+ .. ..+..|.+|++|+|..|.|.+. ..+ .++
T Consensus 20 ~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIs--sL----~pl~rCtrLkElYLRkN~I~sl--dEL-~YL 84 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKIS--SL----APLQRCTRLKELYLRKNCIESL--DEL-EYL 84 (388)
T ss_pred HhhhhcccCCCccH------HHHHHhcccceeEEeeccccc--cc----hhHHHHHHHHHHHHHhcccccH--HHH-HHH
Confidence 34445555554443 112233455555555555443 11 1234445555555555555432 122 334
Q ss_pred hcCCcccEEECcCCcc
Q psy3611 91 TDNTTLEDVNLTCNEI 106 (472)
Q Consensus 91 ~~~~~L~~L~l~~~~i 106 (472)
.++++|+.|.|..|..
T Consensus 85 knlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPC 100 (388)
T ss_pred hcCchhhhHhhccCCc
Confidence 4445555555554443
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.35 E-value=0.0017 Score=62.88 Aligned_cols=138 Identities=16% Similarity=0.200 Sum_probs=74.6
Q ss_pred hhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCC-ChhHHHHHHHHHHhhcccCcCCCCCcceeEE
Q psy3611 220 SLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYESSKKEGSPLALKVF 298 (472)
Q Consensus 220 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i-~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L 298 (472)
-+..+..+++|++++|.+.... . .. .+|++|.+++|.- +... ..+ +++|+.|
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP-----~----LP-~sLtsL~Lsnc~nLtsLP-~~L----------------P~nLe~L 99 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLP-----V----LP-NELTEITIENCNNLTTLP-GSI----------------PEGLEKL 99 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccC-----C----CC-CCCcEEEccCCCCcccCC-chh----------------hhhhhhe
Confidence 3455688999999988764332 1 12 3699999987542 1110 011 2478888
Q ss_pred EcCCC-CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCC-CCcccHHHHHHHhcCC
Q psy3611 299 IAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT-ITYKGAIPLGQALSKL 376 (472)
Q Consensus 299 ~l~~~-~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~ 376 (472)
++++| .+. .+ +.+|+.|++..+.... +..+|. +|+.|.+.++. ....+ ++.. -+
T Consensus 100 ~Ls~Cs~L~-----sL------P~sLe~L~L~~n~~~~--L~~LPs------sLk~L~I~~~n~~~~~~---lp~~--LP 155 (426)
T PRK15386 100 TVCHCPEIS-----GL------PESVRSLEIKGSATDS--IKNVPN------GLTSLSINSYNPENQAR---IDNL--IS 155 (426)
T ss_pred EccCccccc-----cc------ccccceEEeCCCCCcc--cccCcc------hHhheeccccccccccc---cccc--cC
Confidence 88877 333 13 3467888877665431 112222 46666664422 11000 1111 13
Q ss_pred CCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCC
Q psy3611 377 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 415 (472)
Q Consensus 377 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n 415 (472)
++|+.|++++|.... ++..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i~-----LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-----LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-----Cccccc--ccCcEEEeccc
Confidence 577888887776542 333233 56777777654
No 69
>KOG3735|consensus
Probab=96.26 E-value=0.012 Score=54.62 Aligned_cols=121 Identities=15% Similarity=0.240 Sum_probs=87.7
Q ss_pred CCCccEEeCCCC-CCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHH
Q psy3611 320 LKTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 398 (472)
Q Consensus 320 ~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 398 (472)
-+.++..++... +|...-+..+..++..+...+.+.+.+....+..+..++.++.-+++|+.|++.+|.|++.|+..+.
T Consensus 197 d~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~ 276 (353)
T KOG3735|consen 197 DTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALL 276 (353)
T ss_pred CCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHH
Confidence 357888888775 3555556677788888888888888888777767777778888888888888888888888887777
Q ss_pred HHhhcCCCCCEEECcCC--CCCchhHHHHHHHHhcCCcccEEEc
Q psy3611 399 KYLTDNTTLEDVNLTCN--EISVQGGLDLVKAMKNKTKLKQINV 440 (472)
Q Consensus 399 ~~l~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~~L~~L~l 440 (472)
.++..+.+|..+...+. .++....-.++..+..+.+|-.+-.
T Consensus 277 ~al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~gy 320 (353)
T KOG3735|consen 277 RALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFGY 320 (353)
T ss_pred HHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhccccccccc
Confidence 88888888887776543 2444444456666666666555433
No 70
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.19 E-value=0.0062 Score=34.72 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=9.6
Q ss_pred CccEEEccCCCCCcccHHHHHH
Q psy3611 350 NLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 350 ~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
+|++|+|++|.++++|+..+++
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHHH
Confidence 3444444444444444444433
No 71
>KOG1644|consensus
Probab=96.09 E-value=0.0024 Score=54.90 Aligned_cols=109 Identities=20% Similarity=0.311 Sum_probs=74.0
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
.+...+||.+|.+.. ..-|...+.|..|.+++|.|+..+ + ..-..+++|+.|.+.+|.+...+ .+ +-
T Consensus 42 d~~d~iDLtdNdl~~------l~~lp~l~rL~tLll~nNrIt~I~--p--~L~~~~p~l~~L~LtnNsi~~l~--dl-~p 108 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK------LDNLPHLPRLHTLLLNNNRITRID--P--DLDTFLPNLKTLILTNNSIQELG--DL-DP 108 (233)
T ss_pred cccceecccccchhh------cccCCCccccceEEecCCcceeec--c--chhhhccccceEEecCcchhhhh--hc-ch
Confidence 356788898887775 334667788999999999986432 2 22344578999999999776422 12 22
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 132 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 132 (472)
+..+++|++|.+-+|.+....--+ ...+...++|++||..+-
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR-~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYR-LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hccCCccceeeecCCchhcccCce-eEEEEecCcceEeehhhh
Confidence 445789999999999887532111 123456789999987653
No 72
>KOG3735|consensus
Probab=96.05 E-value=0.02 Score=53.12 Aligned_cols=119 Identities=19% Similarity=0.275 Sum_probs=88.4
Q ss_pred CCCccEEEccCCC-CCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHH
Q psy3611 348 NKNLRHLNLNDNT-ITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLV 426 (472)
Q Consensus 348 ~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 426 (472)
=+.++..++..+. |...-.....+++...+..+...+.+.+..+..+-.++..+..+++|+.|++++|.|+..|+..+.
T Consensus 197 d~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~ 276 (353)
T KOG3735|consen 197 DTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALL 276 (353)
T ss_pred CCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHH
Confidence 3578888887763 444345566678888888888888888888777766777778888899999999999988888888
Q ss_pred HHHhcCCcccEEEccCCC--CChhHHHHHHHHHHhCCceeEE
Q psy3611 427 KAMKNKTKLKQINVSENQ--FGEEGVEEMEKLMKSFGMAAAL 466 (472)
Q Consensus 427 ~~l~~~~~L~~L~l~~n~--i~~~~~~~l~~~l~~~~~L~~L 466 (472)
.++..+.+|..+.+.+-. .+...-..++..++.+.++-.+
T Consensus 277 ~al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~ 318 (353)
T KOG3735|consen 277 RALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKF 318 (353)
T ss_pred HHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhccccccc
Confidence 888888888888776532 3444445577777777776544
No 73
>KOG2739|consensus
Probab=95.95 E-value=0.0032 Score=56.35 Aligned_cols=107 Identities=22% Similarity=0.283 Sum_probs=68.7
Q ss_pred hcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHH
Q psy3611 8 KLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87 (472)
Q Consensus 8 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~ 87 (472)
.+..|+.+.+.+..++. ...+-.+|+|+.|.++.|.....+-.. -....+|+|+++++++|++.. +..+.
T Consensus 41 ~~~~le~ls~~n~gltt------~~~~P~Lp~LkkL~lsdn~~~~~~~l~--vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT------LTNFPKLPKLKKLELSDNYRRVSGGLE--VLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccchhhhhhhccceee------cccCCCcchhhhhcccCCcccccccce--ehhhhCCceeEEeecCCcccc--ccccc
Confidence 34556667776666654 223445789999999999544334333 234556999999999999875 22342
Q ss_pred HHhhcCCcccEEECcCCccCcch-H-HHHHHHhhhCCCccEEE
Q psy3611 88 KYLTDNTTLEDVNLTCNEISVQG-G-LDLVKAMKNKTKLKQIN 128 (472)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~i~~~~-~-~~l~~~l~~~~~L~~L~ 128 (472)
-+..+.+|..|++.+|..+... . ..++ .-+++|++|+
T Consensus 111 -pl~~l~nL~~Ldl~n~~~~~l~dyre~vf---~ll~~L~~LD 149 (260)
T KOG2739|consen 111 -PLKELENLKSLDLFNCSVTNLDDYREKVF---LLLPSLKYLD 149 (260)
T ss_pred -hhhhhcchhhhhcccCCccccccHHHHHH---HHhhhhcccc
Confidence 2455788999999998776411 1 1223 3356777775
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.86 E-value=0.014 Score=33.25 Aligned_cols=24 Identities=25% Similarity=0.713 Sum_probs=11.6
Q ss_pred cccEEEccCCCCChhHHHHHHHHH
Q psy3611 434 KLKQINVSENQFGEEGVEEMEKLM 457 (472)
Q Consensus 434 ~L~~L~l~~n~i~~~~~~~l~~~l 457 (472)
+|++|+|++|.+++.|...+.+++
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHHHHh
Confidence 444455555555544444444443
No 75
>KOG2739|consensus
Probab=95.78 E-value=0.0027 Score=56.80 Aligned_cols=115 Identities=23% Similarity=0.215 Sum_probs=74.7
Q ss_pred hhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCc--cccchhHHHHHHHhhcCCcccEEECcCCccCcchH
Q psy3611 34 FEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC--LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGG 111 (472)
Q Consensus 34 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~--~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~ 111 (472)
......|+.|.+.++.++ ++ ..+..+++|+.|.++.| ++.. .+......+++|++|++++|.+.+ +
T Consensus 39 ~d~~~~le~ls~~n~glt-----t~-~~~P~Lp~LkkL~lsdn~~~~~~----~l~vl~e~~P~l~~l~ls~Nki~~--l 106 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT-----TL-TNFPKLPKLKKLELSDNYRRVSG----GLEVLAEKAPNLKVLNLSGNKIKD--L 106 (260)
T ss_pred cccccchhhhhhhcccee-----ec-ccCCCcchhhhhcccCCcccccc----cceehhhhCCceeEEeecCCcccc--c
Confidence 334456777776666553 22 35677899999999999 4443 233333446999999999999985 2
Q ss_pred HHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCC
Q psy3611 112 LDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 162 (472)
Q Consensus 112 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~ 162 (472)
+.+. -+....+|..|++.+|..+. .-..--+....+++|+.|......+
T Consensus 107 stl~-pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 107 STLR-PLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred cccc-hhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 2333 33567789999999996654 2222233344477777777666554
No 76
>KOG3864|consensus
Probab=95.77 E-value=0.012 Score=50.75 Aligned_cols=34 Identities=18% Similarity=0.426 Sum_probs=17.1
Q ss_pred CCCCEEECcCC-CCCchhHHHHHHHHhcCCcccEEEccC
Q psy3611 405 TTLEDVNLTCN-EISVQGGLDLVKAMKNKTKLKQINVSE 442 (472)
Q Consensus 405 ~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~ 442 (472)
++|+.|+|++| +|++.| ...+...++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~G----L~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGG----LACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhH----HHHHHHhhhhHHHHhcC
Confidence 55555555555 455543 22333445555555544
No 77
>KOG3864|consensus
Probab=95.58 E-value=0.0085 Score=51.61 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=62.2
Q ss_pred CCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCC-CCCchhHHHHHHHHhcCCcccEEEccCCC-CChhHHHHHHH
Q psy3611 378 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN-EISVQGGLDLVKAMKNKTKLKQINVSENQ-FGEEGVEEMEK 455 (472)
Q Consensus 378 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~ 455 (472)
.++.+|-+++.|..+|. ..+..++.++.+.+.+| .+.+.+..-+.. -.++|+.|++++|+ |++.|+..+..
T Consensus 102 ~IeaVDAsds~I~~eGl----e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL----EHLRDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHHH----HHHhccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHHH
Confidence 57788888888888775 44567788899999888 577765444333 45699999999997 99999886665
Q ss_pred HHHhCCceeEEecCC
Q psy3611 456 LMKSFGMAAALVLED 470 (472)
Q Consensus 456 ~l~~~~~L~~L~l~~ 470 (472)
+++|+.|.+.+
T Consensus 175 ----lknLr~L~l~~ 185 (221)
T KOG3864|consen 175 ----LKNLRRLHLYD 185 (221)
T ss_pred ----hhhhHHHHhcC
Confidence 78888877654
No 78
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.53 E-value=0.014 Score=56.78 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=80.9
Q ss_pred CCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCC-
Q psy3611 253 CCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQN- 331 (472)
Q Consensus 253 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~- 331 (472)
.|++++.|++++|.++ .+ + .-+++|+.|.++++.--. .++..+ +.+|++|.+++|
T Consensus 50 ~~~~l~~L~Is~c~L~-----sL----------P---~LP~sLtsL~Lsnc~nLt----sLP~~L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 50 EARASGRLYIKDCDIE-----SL----------P---VLPNELTEITIENCNNLT----TLPGSI--PEGLEKLTVCHCP 105 (426)
T ss_pred HhcCCCEEEeCCCCCc-----cc----------C---CCCCCCcEEEccCCCCcc----cCCchh--hhhhhheEccCcc
Confidence 4678999999998763 11 1 123579999998753321 244433 458999999988
Q ss_pred CCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcC-CCCCcEEEcCCCC-CChHHHHHHHHHhhcCCCCCE
Q psy3611 332 GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK-LPSLAILNLGDCL-LKSAGASSIAKYLTDNTTLED 409 (472)
Q Consensus 332 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~ 409 (472)
.+. .++ ++|+.|++.++.... +.. .++|+.|.+.++. ....+ ++..++ ++|+.
T Consensus 106 ~L~-----sLP------~sLe~L~L~~n~~~~---------L~~LPssLk~L~I~~~n~~~~~~---lp~~LP--sSLk~ 160 (426)
T PRK15386 106 EIS-----GLP------ESVRSLEIKGSATDS---------IKNVPNGLTSLSINSYNPENQAR---IDNLIS--PSLKT 160 (426)
T ss_pred ccc-----ccc------cccceEEeCCCCCcc---------cccCcchHhheeccccccccccc---cccccC--CcccE
Confidence 442 222 368888887765442 122 3467888875433 11100 121122 78999
Q ss_pred EECcCCCCCchhHHHHHHHHhcCCcccEEEccCC
Q psy3611 410 VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 443 (472)
Q Consensus 410 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n 443 (472)
|++++|.... ++..+. .+|++|.++.+
T Consensus 161 L~Is~c~~i~-----LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 161 LSLTGCSNII-----LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EEecCCCccc-----Cccccc--ccCcEEEeccc
Confidence 9999887543 343332 48888888765
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.36 E-value=0.015 Score=31.70 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=14.7
Q ss_pred cCCccEEeccCCCcchhhHHHHH
Q psy3611 9 LKTLEHVEMPQNGIYHVGITALS 31 (472)
Q Consensus 9 ~~~L~~L~L~~~~l~~~~~~~l~ 31 (472)
|++|++|+|++|.|++.|++++.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46778888888888877766554
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.88 E-value=0.022 Score=31.00 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=10.1
Q ss_pred CcccEEEccCCCCChhHHHHH
Q psy3611 433 TKLKQINVSENQFGEEGVEEM 453 (472)
Q Consensus 433 ~~L~~L~l~~n~i~~~~~~~l 453 (472)
++|++|++++|+|++.+++.+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455555555555555555544
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.83 E-value=0.16 Score=28.15 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=14.3
Q ss_pred CCcceEEEeeCCC-CChhHHHHHH
Q psy3611 254 CFALEELKLNNNG-LGITGCKLLS 276 (472)
Q Consensus 254 ~~~L~~L~l~~~~-i~~~~~~~l~ 276 (472)
|++|+.|++++|. ++|.+...++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 4566677776664 6666665554
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=90.85 E-value=0.27 Score=27.23 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=13.3
Q ss_pred CCcccEEEccCCC-CChhHHHHHH
Q psy3611 432 KTKLKQINVSENQ-FGEEGVEEME 454 (472)
Q Consensus 432 ~~~L~~L~l~~n~-i~~~~~~~l~ 454 (472)
|++|++|++++|. |++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 3556666666664 6666655543
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.38 E-value=0.37 Score=38.92 Aligned_cols=60 Identities=22% Similarity=0.491 Sum_probs=23.6
Q ss_pred HhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCC
Q psy3611 317 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386 (472)
Q Consensus 317 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~ 386 (472)
|..+.+|+.+.+..+ +...+ ..++..+++++.+.+.+ .+...+. ..+..++.++.+++..
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~----~~~F~~~~~l~~i~~~~-~~~~i~~----~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIG----DNAFSNCKSLESITFPN-NLKSIGD----NAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-----TTTTTT-TT-EEEEETS-TT-EE-T----TTTTT-TTECEEEETT
T ss_pred ccccccccccccccc-ccccc----eeeeecccccccccccc-ccccccc----ccccccccccccccCc
Confidence 344555666665553 32211 22344455566666644 2221111 2344455556665544
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.89 E-value=0.52 Score=38.03 Aligned_cols=107 Identities=28% Similarity=0.472 Sum_probs=57.5
Q ss_pred HHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
.+|.+|++|+.+.+... +..-+ ..+|..+++|+.+.+..+ +...+. .++..+++++.+.+.. .+...+
T Consensus 6 ~~F~~~~~l~~i~~~~~-~~~I~----~~~F~~~~~l~~i~~~~~-~~~i~~----~~F~~~~~l~~i~~~~-~~~~i~- 73 (129)
T PF13306_consen 6 NAFYNCSNLESITFPNT-IKKIG----ENAFSNCTSLKSINFPNN-LTSIGD----NAFSNCKSLESITFPN-NLKSIG- 73 (129)
T ss_dssp TTTTT-TT--EEEETST---EE-----TTTTTT-TT-SEEEESST-TSCE-T----TTTTT-TT-EEEEETS-TT-EE--
T ss_pred HHHhCCCCCCEEEECCC-eeEeC----hhhccccccccccccccc-ccccce----eeeecccccccccccc-cccccc-
Confidence 46888999999998753 44311 455788889999999875 432232 4678888899999976 333221
Q ss_pred HHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecC
Q psy3611 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 131 (472)
Q Consensus 84 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~ 131 (472)
...+..+++|+.+++..+ +..- -...+..+ .|+.+.+..
T Consensus 74 ---~~~F~~~~~l~~i~~~~~-~~~i----~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 74 ---DNAFSNCTNLKNIDIPSN-ITEI----GSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ---TTTTTT-TTECEEEETTT--BEE----HTTTTTT--T--EEE-TT
T ss_pred ---cccccccccccccccCcc-ccEE----chhhhcCC-CceEEEECC
Confidence 133445789999998765 3321 12234555 888888765
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.54 E-value=0.62 Score=22.89 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=4.9
Q ss_pred CCcEEeccCcccc
Q psy3611 67 SLAILNLGDCLLK 79 (472)
Q Consensus 67 ~L~~L~ls~~~l~ 79 (472)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555443
No 86
>KOG3763|consensus
Probab=82.93 E-value=1.9 Score=43.23 Aligned_cols=67 Identities=24% Similarity=0.294 Sum_probs=38.2
Q ss_pred cCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCC--CCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 347 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC--LLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 347 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~--~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
+.|.+..+++++|++.+-.. +-..-...|.|+.|+|++| .+... ..+.+ -+...|++|-+.||.+-+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~--~sslsq~apklk~L~LS~N~~~~~~~--~el~K--~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDA--LSSLSQIAPKLKTLDLSHNHSKISSE--SELDK--LKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhh--hhHHHHhcchhheeecccchhhhcch--hhhhh--hcCCCHHHeeecCCcccc
Confidence 45678888888887764221 2233345677888888887 33321 01111 123556777777776654
No 87
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=79.90 E-value=0.25 Score=26.14 Aligned_cols=10 Identities=30% Similarity=0.528 Sum_probs=3.8
Q ss_pred CEEECcCCCC
Q psy3611 408 EDVNLTCNEI 417 (472)
Q Consensus 408 ~~L~L~~n~i 417 (472)
+.|+|++|.+
T Consensus 3 ~~Ldls~n~l 12 (22)
T PF00560_consen 3 EYLDLSGNNL 12 (22)
T ss_dssp SEEEETSSEE
T ss_pred cEEECCCCcC
Confidence 3333333333
No 88
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=70.79 E-value=2.4 Score=33.95 Aligned_cols=91 Identities=14% Similarity=0.264 Sum_probs=49.1
Q ss_pred hHHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccch
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 81 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~ 81 (472)
+...|.+|+.++ .++..- ....+..+...|..++.| ..+++.... ..+..+..+|..++.|.. +++......
T Consensus 3 ~~~~F~~~~~l~-~~i~~~--dts~vt~m~~mF~~~~~l-~~~l~~w~~--s~vt~m~~mF~~~~~l~~-dls~w~~s~- 74 (120)
T PF03382_consen 3 LSSMFANCTNLN-IDISNW--DTSNVTDMSYMFYGCTSL-NQDLSNWDT--SNVTNMSGMFAGCSSLNQ-DLSNWDTSN- 74 (120)
T ss_pred HHHHHHhchhcc-CCcccc--ccccceeHHHHhhcchhc-cCChhhhcc--hhheeHHHHHhhhhhcCC-Ccccccccc-
Confidence 456777787776 666443 334444667777777777 334544332 244444466666666666 665543332
Q ss_pred hHHHHHHHhhcCCcccEEECc
Q psy3611 82 GASSIAKYLTDNTTLEDVNLT 102 (472)
Q Consensus 82 ~~~~l~~~l~~~~~L~~L~l~ 102 (472)
+..+...+..++.+ ..+++
T Consensus 75 -v~~~~~mF~~~~~l-~~~l~ 93 (120)
T PF03382_consen 75 -VTNMSNMFSGCSSL-NQDLS 93 (120)
T ss_pred -cccHHHHHhhhHHc-CCchh
Confidence 22344444444555 34443
No 89
>KOG3763|consensus
Probab=70.53 E-value=5.2 Score=40.27 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=16.4
Q ss_pred CCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCc
Q psy3611 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC 76 (472)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~ 76 (472)
|.+..++|++|.+....... ..-...|+|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~s--slsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALS--SLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhh--HHHHhcchhheeecccc
Confidence 44555555555543222222 33333455555555555
No 90
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=59.60 E-value=9.5 Score=20.75 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=5.9
Q ss_pred CCcEEeccCcccc
Q psy3611 67 SLAILNLGDCLLK 79 (472)
Q Consensus 67 ~L~~L~ls~~~l~ 79 (472)
+|++|++++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=59.60 E-value=9.5 Score=20.75 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=5.9
Q ss_pred CCcEEeccCcccc
Q psy3611 67 SLAILNLGDCLLK 79 (472)
Q Consensus 67 ~L~~L~ls~~~l~ 79 (472)
+|++|++++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 92
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=53.35 E-value=11 Score=20.86 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=7.0
Q ss_pred CCccEEeccCCCcc
Q psy3611 10 KTLEHVEMPQNGIY 23 (472)
Q Consensus 10 ~~L~~L~L~~~~l~ 23 (472)
++|+.|+|++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555443
No 93
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=46.85 E-value=7.6 Score=31.00 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=5.1
Q ss_pred HHHHHHhcCCCc
Q psy3611 340 ALSDAFEENKNL 351 (472)
Q Consensus 340 ~l~~~l~~~~~L 351 (472)
.+...+.+++.|
T Consensus 27 ~m~~mF~~~~~l 38 (120)
T PF03382_consen 27 DMSYMFYGCTSL 38 (120)
T ss_pred eHHHHhhcchhc
Confidence 334444444444
No 94
>KOG0473|consensus
Probab=41.73 E-value=0.74 Score=40.93 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=39.2
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 372 (472)
...+.||++.|++.. +..-++-...+..|+++.+.+. .+++-+++...+..++...|... ..+.+
T Consensus 42 kr~tvld~~s~r~vn-----~~~n~s~~t~~~rl~~sknq~~-----~~~~d~~q~~e~~~~~~~~n~~~-----~~p~s 106 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVN-----LGKNFSILTRLVRLDLSKNQIK-----FLPKDAKQQRETVNAASHKNNHS-----QQPKS 106 (326)
T ss_pred ceeeeehhhhhHHHh-----hccchHHHHHHHHHhccHhhHh-----hChhhHHHHHHHHHHHhhccchh-----hCCcc
Confidence 345566666655543 2223333444555555555432 33444444444555555554433 23344
Q ss_pred hcCCCCCcEEEcCCCCC
Q psy3611 373 LSKLPSLAILNLGDCLL 389 (472)
Q Consensus 373 l~~~~~L~~L~l~~~~i 389 (472)
..+.|.++.++.-++.+
T Consensus 107 ~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEF 123 (326)
T ss_pred ccccCCcchhhhccCcc
Confidence 44555555555555554
No 95
>KOG0473|consensus
Probab=38.97 E-value=1.1 Score=39.77 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=54.1
Q ss_pred hhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHH
Q psy3611 34 FEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLD 113 (472)
Q Consensus 34 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~ 113 (472)
+......+.||++.|.+-..+ ..+..+..+..|+++.|.+. .+++-.++...+..+++..|..+.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~-----~n~s~~t~~~rl~~sknq~~-----~~~~d~~q~~e~~~~~~~~n~~~~----- 102 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLG-----KNFSILTRLVRLDLSKNQIK-----FLPKDAKQQRETVNAASHKNNHSQ----- 102 (326)
T ss_pred hhccceeeeehhhhhHHHhhc-----cchHHHHHHHHHhccHhhHh-----hChhhHHHHHHHHHHHhhccchhh-----
Confidence 344567777888777643222 22333445666777766543 345555555666667777776663
Q ss_pred HHHHhhhCCCccEEEecCCcCCh
Q psy3611 114 LVKAMKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 114 l~~~l~~~~~L~~L~l~~~~i~~ 136 (472)
.|.+....++++.++..++.+.+
T Consensus 103 ~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 103 QPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred CCccccccCCcchhhhccCcchH
Confidence 56677777778887777776554
No 96
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=29.69 E-value=24 Score=19.57 Aligned_cols=14 Identities=21% Similarity=0.603 Sum_probs=7.5
Q ss_pred CCCEEECcCCCCCc
Q psy3611 406 TLEDVNLTCNEISV 419 (472)
Q Consensus 406 ~L~~L~L~~n~i~~ 419 (472)
+|+.|++++|+++.
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 45555555555544
No 97
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=22.81 E-value=68 Score=17.64 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=5.0
Q ss_pred ccEEEccCCCC
Q psy3611 351 LRHLNLNDNTI 361 (472)
Q Consensus 351 L~~L~l~~n~l 361 (472)
|++|.|....+
T Consensus 2 LKtL~L~~v~f 12 (26)
T PF07723_consen 2 LKTLHLDSVVF 12 (26)
T ss_pred CeEEEeeEEEE
Confidence 44444444444
Done!