Query psy3611
Match_columns 472
No_of_seqs 147 out of 2333
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 21:01:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z7x_W Ribonuclease inhibitor; 100.0 6.2E-40 2.1E-44 330.6 40.5 412 3-471 21-437 (461)
2 1z7x_W Ribonuclease inhibitor; 100.0 3.2E-39 1.1E-43 325.4 42.5 407 2-466 48-460 (461)
3 2ca6_A RAN GTPase-activating p 100.0 2.1E-30 7E-35 254.8 30.3 311 76-461 14-333 (386)
4 2ca6_A RAN GTPase-activating p 100.0 1E-29 3.5E-34 249.9 28.4 304 13-421 7-319 (386)
5 3goz_A Leucine-rich repeat-con 100.0 2.9E-29 9.9E-34 244.3 25.5 301 42-430 2-309 (362)
6 3goz_A Leucine-rich repeat-con 100.0 9.8E-29 3.3E-33 240.6 24.7 301 14-402 2-309 (362)
7 3ogk_B Coronatine-insensitive 100.0 1.2E-27 4E-32 248.6 31.9 398 5-471 107-523 (592)
8 3rgz_A Protein brassinosteroid 100.0 9.6E-31 3.3E-35 279.2 -4.0 379 8-471 267-714 (768)
9 2p1m_B Transport inhibitor res 100.0 2.6E-26 8.9E-31 238.4 29.5 157 293-468 372-538 (594)
10 3v47_A TOLL-like receptor 5B a 100.0 5.1E-29 1.8E-33 250.3 6.8 363 10-461 30-425 (455)
11 3v47_A TOLL-like receptor 5B a 99.9 2.4E-28 8.1E-33 245.5 9.9 339 3-420 47-410 (455)
12 2z7x_B TOLL-like receptor 1, v 99.9 7.7E-28 2.6E-32 245.9 12.3 173 253-461 322-498 (520)
13 4fmz_A Internalin; leucine ric 99.9 5E-26 1.7E-30 220.2 23.8 304 6-471 40-343 (347)
14 4eco_A Uncharacterized protein 99.9 7.4E-29 2.5E-33 258.9 4.0 352 2-471 198-597 (636)
15 2p1m_B Transport inhibitor res 99.9 6E-25 2.1E-29 228.2 32.6 396 3-471 98-516 (594)
16 3ogk_B Coronatine-insensitive 99.9 1.1E-25 3.6E-30 233.8 26.8 369 9-469 136-546 (592)
17 3rgz_A Protein brassinosteroid 99.9 2.7E-29 9.2E-34 268.1 -1.4 373 6-471 174-548 (768)
18 2z81_A CD282 antigen, TOLL-lik 99.9 7.1E-28 2.4E-32 247.9 8.6 109 10-133 26-134 (549)
19 3t6q_A CD180 antigen; protein- 99.9 3.4E-28 1.2E-32 253.3 6.0 125 3-143 50-174 (606)
20 3vq2_A TLR4, TOLL-like recepto 99.9 2.5E-28 8.5E-33 254.3 3.8 205 222-471 347-555 (606)
21 3t6q_A CD180 antigen; protein- 99.9 2.9E-28 1E-32 253.8 4.3 396 10-471 33-486 (606)
22 4ecn_A Leucine-rich repeat pro 99.9 4.7E-28 1.6E-32 257.8 5.1 353 2-471 440-837 (876)
23 4eco_A Uncharacterized protein 99.9 1.7E-28 5.7E-33 256.3 1.0 204 221-472 349-577 (636)
24 2z7x_B TOLL-like receptor 1, v 99.9 3.2E-27 1.1E-31 241.4 8.1 401 10-471 21-478 (520)
25 4fmz_A Internalin; leucine ric 99.9 2.7E-25 9.2E-30 215.1 19.1 286 5-446 61-346 (347)
26 3o6n_A APL1; leucine-rich repe 99.9 4.4E-27 1.5E-31 231.4 6.2 316 8-453 43-359 (390)
27 4ecn_A Leucine-rich repeat pro 99.9 4.1E-27 1.4E-31 250.6 6.2 335 60-472 442-817 (876)
28 1o6v_A Internalin A; bacterial 99.9 2.2E-25 7.6E-30 224.4 18.1 342 8-471 44-385 (466)
29 2z81_A CD282 antigen, TOLL-lik 99.9 4.5E-26 1.5E-30 234.5 11.7 370 5-471 45-483 (549)
30 3o6n_A APL1; leucine-rich repe 99.9 2.8E-26 9.7E-31 225.6 8.4 294 4-423 63-357 (390)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.3E-26 2.5E-30 233.4 11.3 401 10-471 52-507 (562)
32 2id5_A Lingo-1, leucine rich r 99.9 2.2E-26 7.7E-31 232.5 6.9 303 10-447 32-334 (477)
33 2z63_A TOLL-like receptor 4, v 99.9 4.5E-27 1.5E-31 243.0 -0.0 120 5-139 47-166 (570)
34 3oja_B Anopheles plasmodium-re 99.9 3.7E-26 1.3E-30 237.0 6.4 312 9-450 50-362 (597)
35 1o6v_A Internalin A; bacterial 99.9 2E-24 7E-29 217.4 18.5 320 37-472 45-364 (466)
36 3vq2_A TLR4, TOLL-like recepto 99.9 2.6E-27 8.8E-32 246.7 -4.2 166 289-471 346-531 (606)
37 3oja_B Anopheles plasmodium-re 99.9 1.5E-25 5.2E-30 232.4 8.7 293 4-421 69-361 (597)
38 1ziw_A TOLL-like receptor 3; i 99.9 1.4E-25 4.7E-30 236.8 7.6 211 225-471 222-440 (680)
39 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-25 4.5E-30 242.0 2.7 182 255-471 266-461 (844)
40 2id5_A Lingo-1, leucine rich r 99.9 9.2E-26 3.1E-30 228.0 0.8 317 13-471 14-330 (477)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.6E-24 8.9E-29 221.8 11.6 371 3-448 69-512 (562)
42 2z63_A TOLL-like receptor 4, v 99.9 6.2E-26 2.1E-30 234.4 -1.0 390 4-447 70-532 (570)
43 1ziw_A TOLL-like receptor 3; i 99.9 7.7E-25 2.6E-29 231.0 6.5 356 10-471 25-391 (680)
44 3j0a_A TOLL-like receptor 5; m 99.9 9.5E-25 3.2E-29 235.3 3.6 112 9-136 23-137 (844)
45 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-23 6.2E-28 209.2 9.1 301 5-447 37-353 (457)
46 3un9_A NLR family member X1; l 99.9 2.2E-21 7.7E-26 188.3 23.4 213 225-451 72-288 (372)
47 3un9_A NLR family member X1; l 99.9 5.4E-21 1.9E-25 185.6 21.2 201 255-467 72-274 (372)
48 1xku_A Decorin; proteoglycan, 99.9 3E-23 1E-27 199.2 5.1 296 39-471 32-329 (330)
49 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-23 3.9E-28 220.1 -0.1 152 291-461 443-596 (635)
50 2z80_A TOLL-like receptor 2, v 99.9 5.5E-22 1.9E-26 192.2 10.9 158 290-461 171-331 (353)
51 1xku_A Decorin; proteoglycan, 99.9 3.2E-22 1.1E-26 192.1 8.1 295 11-444 32-330 (330)
52 2z80_A TOLL-like receptor 2, v 99.8 1.8E-21 6E-26 188.7 9.5 285 8-420 29-316 (353)
53 2ft3_A Biglycan; proteoglycan, 99.8 1.6E-22 5.4E-27 194.3 1.8 295 39-471 34-330 (332)
54 2ast_B S-phase kinase-associat 99.8 1E-19 3.6E-24 174.9 20.8 114 293-421 168-287 (336)
55 2ft3_A Biglycan; proteoglycan, 99.8 8E-22 2.7E-26 189.4 5.5 296 11-444 34-331 (332)
56 2ast_B S-phase kinase-associat 99.8 2E-19 6.7E-24 172.9 20.2 253 38-420 47-308 (336)
57 4g8a_A TOLL-like receptor 4; l 99.8 2.1E-21 7.2E-26 202.9 5.4 430 4-471 70-577 (635)
58 3bz5_A Internalin-J, INLJ; leu 99.8 1.4E-20 4.9E-25 188.2 10.9 294 33-471 37-349 (457)
59 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-22 4E-27 193.5 -8.2 128 294-444 175-302 (313)
60 3o53_A Protein LRIM1, AGAP0063 99.8 1.4E-21 4.9E-26 186.4 -1.1 259 12-413 12-270 (317)
61 1jl5_A Outer protein YOPM; leu 99.8 3E-22 1E-26 200.2 -6.2 156 225-447 215-371 (454)
62 3o53_A Protein LRIM1, AGAP0063 99.8 1.3E-21 4.4E-26 186.6 -1.7 260 39-442 11-271 (317)
63 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-22 4.2E-27 193.3 -9.1 251 38-416 50-302 (313)
64 1io0_A Tropomodulin; LRR prote 99.8 1E-18 3.4E-23 152.6 15.5 152 311-464 26-180 (185)
65 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-19 8.8E-24 184.6 13.0 267 11-456 41-307 (622)
66 1wwl_A Monocyte differentiatio 99.8 1E-20 3.4E-25 180.0 1.5 189 224-448 120-311 (312)
67 1jl5_A Outer protein YOPM; leu 99.8 1.8E-20 6.3E-25 187.2 0.0 324 9-471 10-347 (454)
68 3oja_A Leucine-rich immune mol 99.8 2.9E-20 9.8E-25 187.6 -0.0 236 66-441 34-270 (487)
69 4fcg_A Uncharacterized protein 99.8 2E-19 7E-24 172.1 4.2 111 317-444 202-312 (328)
70 2z66_A Variable lymphocyte rec 99.8 8.1E-20 2.8E-24 173.3 1.1 105 13-135 10-114 (306)
71 1io0_A Tropomodulin; LRR prote 99.8 1.3E-17 4.4E-22 145.5 15.0 139 293-433 36-177 (185)
72 1wwl_A Monocyte differentiatio 99.8 1.4E-20 4.6E-25 179.1 -4.5 262 35-420 40-311 (312)
73 4fcg_A Uncharacterized protein 99.8 9.9E-20 3.4E-24 174.3 1.3 233 65-419 80-315 (328)
74 3oja_A Leucine-rich immune mol 99.8 2E-19 6.7E-24 181.5 3.3 80 37-135 33-112 (487)
75 3g06_A SSPH2 (leucine-rich rep 99.7 2.1E-18 7.1E-23 177.9 9.2 257 37-472 39-295 (622)
76 3zyj_A Leucine-rich repeat-con 99.7 6.4E-19 2.2E-23 175.9 5.1 246 12-389 45-291 (440)
77 3zyi_A Leucine-rich repeat-con 99.7 6.3E-19 2.1E-23 176.6 4.9 245 13-389 57-302 (452)
78 2z66_A Variable lymphocyte rec 99.7 1.5E-19 5.2E-24 171.4 -0.1 113 10-136 28-140 (306)
79 3zyj_A Leucine-rich repeat-con 99.7 4.5E-18 1.5E-22 169.7 7.9 230 10-363 64-293 (440)
80 1ozn_A Reticulon 4 receptor; N 99.7 7.1E-18 2.4E-22 158.2 8.8 57 69-136 14-70 (285)
81 3zyi_A Leucine-rich repeat-con 99.7 3.5E-18 1.2E-22 171.1 6.5 230 10-363 75-304 (452)
82 4glp_A Monocyte differentiatio 99.7 2E-18 6.9E-23 164.0 4.5 190 224-448 116-309 (310)
83 1pgv_A TMD-1, tropomodulin TMD 99.7 9.9E-17 3.4E-21 138.7 13.6 150 312-463 32-185 (197)
84 4glp_A Monocyte differentiatio 99.7 4.5E-18 1.5E-22 161.5 5.1 137 224-391 168-308 (310)
85 1ozn_A Reticulon 4 receptor; N 99.7 1.5E-17 5.3E-22 155.9 8.4 134 292-445 104-237 (285)
86 1pgv_A TMD-1, tropomodulin TMD 99.7 3E-16 1E-20 135.6 15.4 132 340-471 32-167 (197)
87 1p9a_G Platelet glycoprotein I 99.6 5.3E-16 1.8E-20 145.6 8.4 193 225-462 31-225 (290)
88 1h6u_A Internalin H; cell adhe 99.6 2.7E-15 9.3E-20 142.1 12.8 171 223-447 61-231 (308)
89 1h6u_A Internalin H; cell adhe 99.6 6.2E-16 2.1E-20 146.5 8.3 189 223-471 39-227 (308)
90 2z62_A TOLL-like receptor 4, v 99.6 3E-16 1E-20 146.3 5.3 208 38-362 28-237 (276)
91 2z62_A TOLL-like receptor 4, v 99.6 2E-16 6.9E-21 147.5 3.1 38 406-447 201-238 (276)
92 1p9a_G Platelet glycoprotein I 99.6 2.2E-16 7.4E-21 148.2 1.6 218 6-349 6-224 (290)
93 2o6q_A Variable lymphocyte rec 99.6 1.4E-15 4.8E-20 141.3 5.2 194 225-458 37-232 (270)
94 2o6q_A Variable lymphocyte rec 99.6 1.8E-15 6.1E-20 140.6 4.9 200 225-471 16-215 (270)
95 3rfs_A Internalin B, repeat mo 99.5 8.2E-15 2.8E-19 136.2 7.9 182 222-447 38-219 (272)
96 3m19_A Variable lymphocyte rec 99.5 1.1E-14 3.7E-19 133.7 7.5 193 225-460 14-208 (251)
97 3rfs_A Internalin B, repeat mo 99.5 9.5E-15 3.3E-19 135.8 5.9 196 226-471 20-215 (272)
98 1h6t_A Internalin B; cell adhe 99.5 2.3E-14 7.8E-19 134.5 8.1 143 292-470 67-209 (291)
99 4ezg_A Putative uncharacterize 99.5 1.4E-14 4.8E-19 127.8 5.9 151 255-447 44-195 (197)
100 4ezg_A Putative uncharacterize 99.5 2.1E-14 7.3E-19 126.6 6.5 148 293-472 44-192 (197)
101 1h6t_A Internalin B; cell adhe 99.5 2.9E-14 9.9E-19 133.8 7.2 171 223-447 44-214 (291)
102 3m19_A Variable lymphocyte rec 99.4 3.9E-14 1.3E-18 130.0 5.2 176 255-471 14-189 (251)
103 1m9s_A Internalin B; cell inva 99.4 1.2E-13 4.2E-18 142.1 7.4 168 225-446 43-210 (605)
104 2xwt_C Thyrotropin receptor; s 99.4 1.5E-14 5E-19 131.8 -0.9 197 225-471 31-236 (239)
105 1xeu_A Internalin C; cellular 99.4 2.9E-14 9.9E-19 131.7 1.0 170 224-448 18-187 (263)
106 2xwt_C Thyrotropin receptor; s 99.4 1.5E-14 5E-19 131.8 -1.0 198 38-360 31-237 (239)
107 1m9s_A Internalin B; cell inva 99.4 1.9E-13 6.3E-18 140.8 6.9 151 221-419 61-211 (605)
108 1xeu_A Internalin C; cellular 99.4 1.3E-13 4.4E-18 127.3 3.1 150 221-419 37-186 (263)
109 3cvr_A Invasion plasmid antige 99.4 9.7E-13 3.3E-17 134.0 8.4 167 225-456 80-253 (571)
110 1dce_A Protein (RAB geranylger 99.3 2E-15 7E-20 154.4 -11.5 36 92-132 347-382 (567)
111 2ra8_A Uncharacterized protein 99.3 2.1E-12 7.2E-17 124.1 10.1 218 225-470 107-339 (362)
112 3cvr_A Invasion plasmid antige 99.3 1.8E-12 6.1E-17 132.0 8.4 75 38-135 59-133 (571)
113 2ra8_A Uncharacterized protein 99.3 5.6E-12 1.9E-16 121.2 10.8 78 293-371 252-329 (362)
114 2je0_A Acidic leucine-rich nuc 99.3 1.8E-12 6.3E-17 108.5 6.2 133 321-470 17-149 (149)
115 3e6j_A Variable lymphocyte rec 99.3 1.6E-12 5.3E-17 117.4 6.1 147 293-460 40-188 (229)
116 2v9t_B SLIT homolog 2 protein 99.3 3.4E-12 1.2E-16 114.4 6.8 148 293-460 32-180 (220)
117 2je0_A Acidic leucine-rich nuc 99.3 2.1E-12 7.2E-17 108.2 5.0 133 292-441 16-148 (149)
118 2v70_A SLIT-2, SLIT homolog 2 99.3 2E-12 6.8E-17 115.9 3.8 114 317-446 53-166 (220)
119 2ell_A Acidic leucine-rich nuc 99.2 7.6E-13 2.6E-17 113.3 0.7 136 293-445 24-159 (168)
120 1dce_A Protein (RAB geranylger 99.2 3.4E-14 1.2E-18 145.3 -9.6 217 222-468 346-567 (567)
121 2xot_A Amphoterin-induced prot 99.2 4.5E-12 1.6E-16 122.7 5.7 176 228-447 21-203 (361)
122 2ell_A Acidic leucine-rich nuc 99.2 2.8E-12 9.4E-17 109.8 3.5 137 319-472 22-158 (168)
123 3e6j_A Variable lymphocyte rec 99.2 1.9E-12 6.4E-17 116.9 2.2 150 294-471 20-169 (229)
124 2xot_A Amphoterin-induced prot 99.2 3.3E-12 1.1E-16 123.6 3.8 173 257-471 20-199 (361)
125 2v9t_B SLIT homolog 2 protein 99.2 2.2E-12 7.6E-17 115.6 1.2 148 296-471 14-162 (220)
126 2v70_A SLIT-2, SLIT homolog 2 99.2 3.1E-12 1.1E-16 114.6 1.6 151 295-471 13-163 (220)
127 1a9n_A U2A', U2A'; complex (nu 99.2 4.6E-12 1.6E-16 109.3 2.6 136 291-447 17-154 (176)
128 2o6s_A Variable lymphocyte rec 99.2 2.1E-12 7E-17 114.8 0.0 38 225-268 28-65 (208)
129 2o6s_A Variable lymphocyte rec 99.2 1E-11 3.6E-16 110.2 4.4 112 318-445 49-160 (208)
130 1ds9_A Outer arm dynein; leuci 99.2 3.8E-13 1.3E-17 118.6 -6.0 135 313-467 40-180 (198)
131 1a9n_A U2A', U2A'; complex (nu 99.2 1.3E-11 4.5E-16 106.4 3.7 131 318-471 16-150 (176)
132 4b8c_D Glucose-repressible alc 99.1 2.4E-11 8.2E-16 128.1 1.3 109 291-419 222-330 (727)
133 4b8c_D Glucose-repressible alc 99.0 9.8E-11 3.4E-15 123.4 5.5 122 3-144 217-338 (727)
134 3sb4_A Hypothetical leucine ri 99.0 6.4E-11 2.2E-15 113.0 2.7 103 319-439 224-327 (329)
135 1w8a_A SLIT protein; signaling 99.0 4.4E-11 1.5E-15 104.7 1.0 109 322-446 30-139 (192)
136 1ds9_A Outer arm dynein; leuci 99.0 2.8E-11 9.5E-16 106.5 -0.7 139 2-160 40-184 (198)
137 4ay9_X Follicle-stimulating ho 99.0 1.9E-12 6.6E-17 124.8 -9.1 105 13-136 12-118 (350)
138 2wfh_A SLIT homolog 2 protein 99.0 1.6E-10 5.4E-15 101.2 3.9 140 296-459 13-153 (193)
139 2o6r_A Variable lymphocyte rec 99.0 5.2E-10 1.8E-14 96.4 6.1 145 294-461 8-154 (177)
140 3sb4_A Hypothetical leucine ri 98.9 1.2E-10 4.1E-15 111.1 1.1 125 255-411 202-327 (329)
141 1w8a_A SLIT protein; signaling 98.9 6E-10 2.1E-14 97.4 4.5 110 294-420 30-141 (192)
142 4ay9_X Follicle-stimulating ho 98.9 1.1E-11 3.7E-16 119.5 -8.9 107 10-132 30-138 (350)
143 2wfh_A SLIT homolog 2 protein 98.9 8.1E-10 2.8E-14 96.6 3.9 109 10-135 31-139 (193)
144 2o6r_A Variable lymphocyte rec 98.9 1.4E-09 4.6E-14 93.7 5.2 123 9-147 27-151 (177)
145 3e4g_A ATP synthase subunit S, 98.9 2.6E-09 8.9E-14 90.4 6.7 93 349-449 61-156 (176)
146 3g39_A Variable lymphocyte rec 98.8 1.6E-09 5.4E-14 92.7 2.7 81 295-390 11-91 (170)
147 3e4g_A ATP synthase subunit S, 98.7 1.2E-08 4.2E-13 86.3 6.8 86 294-387 62-149 (176)
148 3g39_A Variable lymphocyte rec 98.7 6.8E-09 2.3E-13 88.7 4.6 122 11-151 10-133 (170)
149 2r9u_A Variable lymphocyte rec 98.7 5E-09 1.7E-13 89.9 2.5 103 296-418 15-118 (174)
150 2r9u_A Variable lymphocyte rec 98.6 2.4E-08 8.3E-13 85.5 5.1 116 12-147 14-132 (174)
151 4fdw_A Leucine rich hypothetic 98.4 1.1E-07 3.8E-12 92.7 4.2 103 8-132 111-213 (401)
152 4fs7_A Uncharacterized protein 98.4 8.5E-08 2.9E-12 93.7 3.1 329 4-466 65-393 (394)
153 2ifg_A High affinity nerve gro 98.3 3.2E-07 1.1E-11 87.9 3.8 105 13-136 11-117 (347)
154 4fs7_A Uncharacterized protein 98.3 3E-07 1E-11 89.8 3.4 306 4-438 88-393 (394)
155 2ifg_A High affinity nerve gro 98.2 5.1E-07 1.7E-11 86.5 4.1 105 296-419 11-117 (347)
156 3rw6_A Nuclear RNA export fact 98.0 8.7E-06 3E-10 74.1 7.4 43 36-80 168-210 (267)
157 3rw6_A Nuclear RNA export fact 97.9 2.4E-05 8.1E-10 71.2 8.0 89 6-100 166-257 (267)
158 4fdw_A Leucine rich hypothetic 97.8 2.7E-06 9.2E-11 82.9 -0.2 184 219-446 174-358 (401)
159 4gt6_A Cell surface protein; l 97.8 4.7E-06 1.6E-10 81.2 1.5 110 4-132 57-170 (394)
160 4gt6_A Cell surface protein; l 97.7 5.6E-05 1.9E-09 73.5 6.9 109 4-132 81-192 (394)
161 4h09_A Hypothetical leucine ri 91.3 0.063 2.2E-06 51.3 1.6 108 316-442 235-342 (379)
162 4h09_A Hypothetical leucine ri 90.8 0.17 5.9E-06 48.2 4.2 108 5-131 212-319 (379)
163 3rfe_A Platelet glycoprotein I 89.9 0.24 8.1E-06 39.3 3.6 33 378-415 32-65 (130)
164 3rfe_A Platelet glycoprotein I 89.8 0.28 9.4E-06 38.9 3.9 36 39-78 32-67 (130)
165 2lz0_A Uncharacterized protein 43.1 8.5 0.00029 28.5 1.3 38 5-47 15-52 (100)
No 1
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=6.2e-40 Score=330.59 Aligned_cols=412 Identities=19% Similarity=0.250 Sum_probs=343.3
Q ss_pred HHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCC-CCcEEeccCccccch
Q psy3611 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGDCLLKSA 81 (472)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~-~L~~L~ls~~~l~~~ 81 (472)
.+.+..+++|++|++++|.+++.+...++..+..+++|++|++++|.+++.+...+...+.... +|++|++++|.+++.
T Consensus 21 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~ 100 (461)
T 1z7x_W 21 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100 (461)
T ss_dssp HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred HHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHH
Confidence 3568889999999999999998888889999999999999999999986555544444343332 799999999999998
Q ss_pred hHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhh-CCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccC
Q psy3611 82 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN-KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 160 (472)
Q Consensus 82 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~-~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~ 160 (472)
++..++..+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.++...+..+...+..++.++.|.+...
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 888899999999999999999999998777777766543 5689999999999999888888888888888877665432
Q ss_pred CCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChh
Q psy3611 161 EGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPI 240 (472)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 240 (472)
.- .+. ....+........+.|++|++++|.++..
T Consensus 181 ~i--~~~--------------------------------------------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 181 DI--NEA--------------------------------------------GVRVLCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp BC--HHH--------------------------------------------HHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred Cc--chH--------------------------------------------HHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence 10 000 11122222223457999999999999888
Q ss_pred hHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcC
Q psy3611 241 GVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL 320 (472)
Q Consensus 241 ~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~ 320 (472)
+...++..+. .+++|++|++++|.+++.+...++..+.. .+++|+.|++++|.+++.++..++..+..+
T Consensus 215 ~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~---------~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 215 NCRDLCGIVA--SKASLRELALGSNKLGDVGMAELCPGLLH---------PSSRLRTLWIWECGITAKGCGDLCRVLRAK 283 (461)
T ss_dssp HHHHHHHHHH--HCTTCCEEECCSSBCHHHHHHHHHHHHTS---------TTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH--hCCCccEEeccCCcCChHHHHHHHHHHhc---------CCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence 8777877765 45799999999999999888888776543 247899999999999999999899999999
Q ss_pred CCccEEeCCCCCCChhHHHHHHHHHhcC-CCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHH
Q psy3611 321 KTLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 399 (472)
Q Consensus 321 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 399 (472)
++|++|++++|.+++.+...++..+... ++|++|++++|.+++.+...++..+..+++|++|++++|.+++.++..+..
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 363 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH
Confidence 9999999999999988888888877654 589999999999998888888899999999999999999999988888888
Q ss_pred Hhhc-CCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHh-CCceeEEecCCC
Q psy3611 400 YLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS-FGMAAALVLEDD 471 (472)
Q Consensus 400 ~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~~ 471 (472)
.+.. +++|+.|++++|.+++.|+..++..+..+++|++|++++|++++.+...+.+.+++ ..+|+.|++.+.
T Consensus 364 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 7775 68999999999999999999999999999999999999999999999999988876 346888776553
No 2
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=3.2e-39 Score=325.41 Aligned_cols=407 Identities=25% Similarity=0.328 Sum_probs=344.1
Q ss_pred hHHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCC-CCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccc
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENK-KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~ 80 (472)
+++++..+++|++|++++|.+++.++..+...+.... +|++|++++|.+++.+...+...+..+++|++|++++|.+++
T Consensus 48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 4677888999999999999999878777777665444 799999999999887766666899999999999999999998
Q ss_pred hhHHHHHHHhhc-CCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHh-chhhHHhhhc
Q psy3611 81 AGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS-FGMAAALVLE 158 (472)
Q Consensus 81 ~~~~~l~~~l~~-~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~-~~~l~~L~~~ 158 (472)
.++..++..+.. .++|++|++++|.+++.+...++..+..+++|++|++++|.+++.++..+...+.. .+.++.|.+.
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence 888888876554 57899999999999999988999999999999999999999998888888876653 3355555443
Q ss_pred cCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCC
Q psy3611 159 DDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFG 238 (472)
Q Consensus 159 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 238 (472)
...-. . .....+...+..+++|++|++++|.++
T Consensus 208 ~n~l~------~-----------------------------------------~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 208 SCGVT------S-----------------------------------------DNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp TSCCB------T-----------------------------------------THHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred CCCCc------H-----------------------------------------HHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 32110 0 111123344567899999999999998
Q ss_pred hhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHh
Q psy3611 239 PIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFK 318 (472)
Q Consensus 239 ~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 318 (472)
+.+...++..+.. .+++|++|++++|.+++.+...++..+..+ ++|+.|++++|.+.+.+...+...+.
T Consensus 241 ~~~~~~l~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~----------~~L~~L~Ls~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 241 DVGMAELCPGLLH-PSSRLRTLWIWECGITAKGCGDLCRVLRAK----------ESLKELSLAGNELGDEGARLLCETLL 309 (461)
T ss_dssp HHHHHHHHHHHTS-TTCCCCEEECTTSCCCHHHHHHHHHHHHHC----------TTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhc-CCCCceEEECcCCCCCHHHHHHHHHHHhhC----------CCcceEECCCCCCchHHHHHHHHHhc
Confidence 8888888776643 357999999999999999999998887764 78999999999999888888887776
Q ss_pred cC-CCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcC-CCCCcEEEcCCCCCChHHHHH
Q psy3611 319 KL-KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK-LPSLAILNLGDCLLKSAGASS 396 (472)
Q Consensus 319 ~~-~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-~~~L~~L~l~~~~i~~~~~~~ 396 (472)
.. ++|++|++++|.+++.++..++..+..+++|++|++++|.+++.+...+++.+.. .+.|++|++++|.+++.|+..
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 55 5999999999999999988999999999999999999999998888788887776 779999999999999999888
Q ss_pred HHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhc-CCcccEEEccCCCCChhHHHHHHHHHHhCCceeEE
Q psy3611 397 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN-KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 466 (472)
Q Consensus 397 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L 466 (472)
++..+..+++|+.|++++|.+++.|+..+...+.. .++|+.|.+.++.+.....+.+....+..|.++.+
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 99999999999999999999999999999988865 45899999999999887777777777888988765
No 3
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.98 E-value=2.1e-30 Score=254.83 Aligned_cols=311 Identities=31% Similarity=0.444 Sum_probs=221.6
Q ss_pred ccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCC---hhhHHHHHHHHHhchhh
Q psy3611 76 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG---EEGVEEMEKLMKSFGMA 152 (472)
Q Consensus 76 ~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~---~~~~~~l~~~l~~~~~l 152 (472)
+.++..++..++..+..+++|++|++++|.+++.+...++..+..+++|++|++++|.+. +..+..+....
T Consensus 14 ~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~------ 87 (386)
T 2ca6_A 14 DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL------ 87 (386)
T ss_dssp SSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH------
T ss_pred CCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH------
Confidence 344555555566666666666666666666666655556666666666777766665332 22222222110
Q ss_pred HHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeC
Q psy3611 153 AALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDL 232 (472)
Q Consensus 153 ~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 232 (472)
..+..+++|++|++
T Consensus 88 ------------------------------------------------------------------~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 88 ------------------------------------------------------------------QALLKCPKLHTVRL 101 (386)
T ss_dssp ------------------------------------------------------------------HHHTTCTTCCEEEC
T ss_pred ------------------------------------------------------------------HHHhhCCcccEEEC
Confidence 01233467777777
Q ss_pred CCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHH
Q psy3611 233 SDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKM 312 (472)
Q Consensus 233 ~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 312 (472)
++|.++..++..++..+. .+++|++|++++|.+++.+...++..+..+.... .-+..++|+.|++++|.+.+.++..
T Consensus 102 s~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLS--KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK-KAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp CSCCCCTTTHHHHHHHHH--HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHH-HHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred CCCcCCHHHHHHHHHHHH--hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhh-hcccCCCCcEEECCCCCCCcHHHHH
Confidence 777777666666665553 3457778888777777776666666654421000 0000147888888888888777777
Q ss_pred HHHHHhcCCCccEEeCCCCCCChhHHHHHHH-HHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCCh
Q psy3611 313 LAAVFKKLKTLERVEMPQNGIYHVGITALSD-AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391 (472)
Q Consensus 313 l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 391 (472)
+...+..+++|++|++++|++++.|+..+.. .+..+++|++|++++|.+++.|...++..+..+++|++|++++|.+++
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 7788888889999999999998888777777 888888999999999998877777888888888999999999999998
Q ss_pred HHHHHHHHHhhc--CCCCCEEECcCCCCCchhHHHHHHHH-hcCCcccEEEccCCCCChhH--HHHHHHHHHhCC
Q psy3611 392 AGASSIAKYLTD--NTTLEDVNLTCNEISVQGGLDLVKAM-KNKTKLKQINVSENQFGEEG--VEEMEKLMKSFG 461 (472)
Q Consensus 392 ~~~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~l~~n~i~~~~--~~~l~~~l~~~~ 461 (472)
.|+..++..+.. +++|+.|+|++|.++..|+..++..+ .++++|++|++++|+++..+ ...+.+.++.++
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence 888888888855 88899999999999888888888888 56789999999999988777 477777777655
No 4
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.97 E-value=1e-29 Score=249.87 Aligned_cols=304 Identities=19% Similarity=0.237 Sum_probs=194.4
Q ss_pred cEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCcccc---c---hhHHHH
Q psy3611 13 EHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLK---S---AGASSI 86 (472)
Q Consensus 13 ~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~---~---~~~~~l 86 (472)
+...++.+.++..++..++..+..+++|++|++++|.++..+...++..+..+++|++|++++|.+. + .++..+
T Consensus 7 ~~~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l 86 (386)
T 2ca6_A 7 EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86 (386)
T ss_dssp TTCCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH
T ss_pred cCcccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHH
Confidence 3445666777888888888999999999999999999887777667677888999999999987543 2 356667
Q ss_pred HHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCc
Q psy3611 87 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSD 166 (472)
Q Consensus 87 ~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~ 166 (472)
+..+..+++|++|+|++|.+++.+...++..+..+++|++|++++|.++..++..+...+..+.....
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~------------ 154 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK------------ 154 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhh------------
Confidence 77788889999999999999988888889899999999999999999987777777765443211000
Q ss_pred cccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHH
Q psy3611 167 EEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLA 246 (472)
Q Consensus 167 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 246 (472)
....+.|++|++++|.+++.+...++
T Consensus 155 ------------------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 155 ------------------------------------------------------AKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp ------------------------------------------------------HHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred ------------------------------------------------------cccCCCCcEEECCCCCCCcHHHHHHH
Confidence 00114566666666666555555554
Q ss_pred HHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEE
Q psy3611 247 DLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 326 (472)
Q Consensus 247 ~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L 326 (472)
..+. .+++|++|++++|.+++.+...+.. ..+..+++|+.|
T Consensus 181 ~~l~--~~~~L~~L~L~~n~l~~~g~~~l~~-------------------------------------~~l~~~~~L~~L 221 (386)
T 2ca6_A 181 KTFQ--SHRLLHTVKMVQNGIRPEGIEHLLL-------------------------------------EGLAYCQELKVL 221 (386)
T ss_dssp HHHH--HCTTCCEEECCSSCCCHHHHHHHHH-------------------------------------TTGGGCTTCCEE
T ss_pred HHHH--hCCCcCEEECcCCCCCHhHHHHHHH-------------------------------------HHhhcCCCccEE
Confidence 4443 2235555555555555444444333 044445555555
Q ss_pred eCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcC--CCCCcEEEcCCCCCChHHHHHHHHHh-hc
Q psy3611 327 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK--LPSLAILNLGDCLLKSAGASSIAKYL-TD 403 (472)
Q Consensus 327 ~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~--~~~L~~L~l~~~~i~~~~~~~l~~~l-~~ 403 (472)
++++|.+++.|+..++..+..+++|++|++++|.+++.|...++..+.. +++|++|++++|.+++.|+..++..+ ..
T Consensus 222 ~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~ 301 (386)
T 2ca6_A 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301 (386)
T ss_dssp ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc
Confidence 5555555554444555555555555555555555554444444455433 55555555555555555554555544 33
Q ss_pred CCCCCEEECcCCCCCchh
Q psy3611 404 NTTLEDVNLTCNEISVQG 421 (472)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~ 421 (472)
+++|+.|++++|.++..+
T Consensus 302 l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 302 MPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCEEECTTSBSCTTS
T ss_pred CCCceEEEccCCcCCcch
Confidence 455555555555555544
No 5
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.97 E-value=2.9e-29 Score=244.33 Aligned_cols=301 Identities=16% Similarity=0.198 Sum_probs=243.3
Q ss_pred eeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCC-cccEEECcCCccCcchHHHHHHHhhh
Q psy3611 42 HLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT-TLEDVNLTCNEISVQGGLDLVKAMKN 120 (472)
Q Consensus 42 ~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~-~L~~L~l~~~~i~~~~~~~l~~~l~~ 120 (472)
+++++.|.++ +..+ ..+...++|++|++++|.+++.+...++..+..++ +|++|++++|.+++.+...+...+..
T Consensus 2 ~~~ls~n~~~--~~~~--~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGS--NPVE--EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTC--CHHH--HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccccccch--HHHH--HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 3567777764 5555 55666667999999999999888888888888888 89999999999998888888887777
Q ss_pred C-CCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccc
Q psy3611 121 K-TKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNA 199 (472)
Q Consensus 121 ~-~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (472)
. ++|++|++++|.+++..+..++..++.+
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-------------------------------------------------- 107 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAI-------------------------------------------------- 107 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTS--------------------------------------------------
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhC--------------------------------------------------
Confidence 6 8999999999998887777777654321
Q ss_pred cccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHH
Q psy3611 200 SNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 279 (472)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l 279 (472)
.++|++|++++|.+++.+...++..+... +++|++|++++|.+++.+...++..+
T Consensus 108 ------------------------~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 108 ------------------------PFTITVLDLGWNDFSSKSSSEFKQAFSNL-PASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp ------------------------CTTCCEEECCSSCGGGSCHHHHHHHHTTS-CTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred ------------------------CCCccEEECcCCcCCcHHHHHHHHHHHhC-CCceeEEEccCCcCCHHHHHHHHHHH
Confidence 16889999999999888888888877532 24899999999999988888888877
Q ss_pred HhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCC-CccEEeCCCCCCChhHHHHHHHHHhcC-CCccEEEcc
Q psy3611 280 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK-TLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLN 357 (472)
Q Consensus 280 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~-~L~~L~l~~~~i~~~~~~~l~~~l~~~-~~L~~L~l~ 357 (472)
... .++|+.|++++|.+++.+...+...+..++ +|++|++++|.+++.++..++..+... ++|++|+++
T Consensus 163 ~~~---------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 163 AAI---------PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp HTS---------CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred hcC---------CccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 654 137999999999998888878888888884 999999999999888888888888874 589999999
Q ss_pred CCCCCcccHHHHHHHhcCCCCCcEEEcCCCC---CChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHh
Q psy3611 358 DNTITYKGAIPLGQALSKLPSLAILNLGDCL---LKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 430 (472)
Q Consensus 358 ~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~---i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 430 (472)
+|.+++.+...+...+..++.|+.|++++|. ++..+...++..+..+++|+.|++++|.+.+.+...+...++
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l~ 309 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIR 309 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHHHH
Confidence 9999888887777777888899999999887 777777777778888888999999999888876555555543
No 6
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.97 E-value=9.8e-29 Score=240.58 Aligned_cols=301 Identities=18% Similarity=0.246 Sum_probs=253.0
Q ss_pred EEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCC-CCcEEeccCccccchhHHHHHHHhhc
Q psy3611 14 HVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGDCLLKSAGASSIAKYLTD 92 (472)
Q Consensus 14 ~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~-~L~~L~ls~~~l~~~~~~~l~~~l~~ 92 (472)
.+.++.+.++. .++..+...++|++|++++|.++..+...++.++..++ +|++|++++|.+++.++..++..+..
T Consensus 2 ~~~ls~n~~~~----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSN----PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTCC----HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccccccchH----HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 35778887776 66777777778999999999998888777778888898 89999999999999888888888887
Q ss_pred C-CcccEEECcCCccCcchHHHHHHHhhhC-CCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccc
Q psy3611 93 N-TTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQD 170 (472)
Q Consensus 93 ~-~~L~~L~l~~~~i~~~~~~~l~~~l~~~-~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~ 170 (472)
. ++|++|++++|.+++.+...+...+..+ ++|++|++++|.++...+..+...+...
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~--------------------- 136 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL--------------------- 136 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS---------------------
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC---------------------
Confidence 6 8999999999999988888888888887 8999999999999888777776653321
Q ss_pred hhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHh
Q psy3611 171 EESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLR 250 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~ 250 (472)
++.|++|++++|.+++.+...++..+.
T Consensus 137 -----------------------------------------------------~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 137 -----------------------------------------------------PASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp -----------------------------------------------------CTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred -----------------------------------------------------CCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 258999999999999888888888876
Q ss_pred ccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhc-CCCccEEeCC
Q psy3611 251 SSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK-LKTLERVEMP 329 (472)
Q Consensus 251 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~-~~~L~~L~l~ 329 (472)
... ++|++|++++|.+++.+...++..+..+ +++|+.|++++|.+++.|...++..+.. +++|++|+++
T Consensus 164 ~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~---------~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 164 AIP-ANVNSLNLRGNNLASKNCAELAKFLASI---------PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp TSC-TTCCEEECTTSCGGGSCHHHHHHHHHTS---------CTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred cCC-ccccEeeecCCCCchhhHHHHHHHHHhC---------CCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 443 2899999999999999988888887764 1489999999999999999889998887 4599999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCC---CCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhh
Q psy3611 330 QNGIYHVGITALSDAFEENKNLRHLNLNDNT---ITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 402 (472)
Q Consensus 330 ~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~---l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~ 402 (472)
+|.+++.+...+...+..+++|+.|++++|. +++++...+.+.+..++.|+.|++++|.+.+.+...+...+.
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l~ 309 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIR 309 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHHHH
Confidence 9999998888888888889999999999997 666666677778888889999999999998876555554443
No 7
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.2e-27 Score=248.57 Aligned_cols=398 Identities=16% Similarity=0.125 Sum_probs=225.2
Q ss_pred HhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCC-CCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKK-LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
.+.++++|++|+|++|.+++.+...+... ++. |++|++++|... ....+......+++|++|++++|.+++.+.
T Consensus 107 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~---~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~ 181 (592)
T 3ogk_B 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKA---RADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDG 181 (592)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHH---HGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCS
T ss_pred HHhhCCCCCeEEeeccEecHHHHHHHHHh---ccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcch
Confidence 33466666666666666665444433332 233 677777666521 122222344566777777777776665554
Q ss_pred HHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCC
Q psy3611 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 163 (472)
Q Consensus 84 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~ 163 (472)
..+......+++|++|++++|.++..+...++..+..+++|++|++++|.+.. +...+..++.|+.|....+.+.
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~ 256 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGGSLNED 256 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEECBCCCC
T ss_pred hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-----HHHHHhhhhHHHhhcccccccc
Confidence 44555555667777777777766643344556666667777777777765543 2223334555555554433221
Q ss_pred CCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHH
Q psy3611 164 CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243 (472)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 243 (472)
.... ..........++..+++.. ......+..+..+++|++|++++|.+++....
T Consensus 257 ~~~~---------~~~~~l~~~~~L~~L~l~~----------------~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~ 311 (592)
T 3ogk_B 257 IGMP---------EKYMNLVFPRKLCRLGLSY----------------MGPNEMPILFPFAAQIRKLDLLYALLETEDHC 311 (592)
T ss_dssp TTCT---------TSSSCCCCCTTCCEEEETT----------------CCTTTGGGGGGGGGGCCEEEETTCCCCHHHHH
T ss_pred cchH---------HHHHHhhccccccccCccc----------------cchhHHHHHHhhcCCCcEEecCCCcCCHHHHH
Confidence 1100 0000011111111111100 11122333455667888888888887665543
Q ss_pred HHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcC-----------CCCCChhhHHH
Q psy3611 244 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG-----------RNRLENEGAKM 312 (472)
Q Consensus 244 ~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~-----------~~~l~~~~~~~ 312 (472)
.+. ..|++|++|+++ +.+++.+...+... +++|++|+++ .+.+++.+.
T Consensus 312 ~~~-----~~~~~L~~L~L~-~~~~~~~l~~~~~~-------------~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~-- 370 (592)
T 3ogk_B 312 TLI-----QKCPNLEVLETR-NVIGDRGLEVLAQY-------------CKQLKRLRIERGADEQGMEDEEGLVSQRGL-- 370 (592)
T ss_dssp HHH-----TTCTTCCEEEEE-GGGHHHHHHHHHHH-------------CTTCCEEEEECCCCSSTTSSTTCCCCHHHH--
T ss_pred HHH-----HhCcCCCEEecc-CccCHHHHHHHHHh-------------CCCCCEEEeecCccccccccccCccCHHHH--
Confidence 322 246788888888 45555555554432 4668888888 356665543
Q ss_pred HHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEcc----CCCCCccc-HHHHHHHhcCCCCCcEEEcCCC
Q psy3611 313 LAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN----DNTITYKG-AIPLGQALSKLPSLAILNLGDC 387 (472)
Q Consensus 313 l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~----~n~l~~~~-~~~l~~~l~~~~~L~~L~l~~~ 387 (472)
......+++|++|+++.+.+++.++..+.. .+++|++|+++ .|.+++.- ...+...+..+++|++|+++.|
T Consensus 371 -~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 371 -IALAQGCQELEYMAVYVSDITNESLESIGT---YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp -HHHHHHCTTCSEEEEEESCCCHHHHHHHHH---HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred -HHHHhhCccCeEEEeecCCccHHHHHHHHh---hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 333456788888888777887665444332 36778888885 55665320 0112334555777888888654
Q ss_pred C--CChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeE
Q psy3611 388 L--LKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAA 465 (472)
Q Consensus 388 ~--i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~ 465 (472)
. +++.+...+. ..+++|+.|++++|.+++.+ ++..+..+++|++|++++|++++.+...+. ..+++|+.
T Consensus 447 ~~~l~~~~~~~~~---~~~~~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~ 517 (592)
T 3ogk_B 447 QGGLTDLGLSYIG---QYSPNVRWMLLGYVGESDEG---LMEFSRGCPNLQKLEMRGCCFSERAIAAAV---TKLPSLRY 517 (592)
T ss_dssp GGGCCHHHHHHHH---HSCTTCCEEEECSCCSSHHH---HHHHHTCCTTCCEEEEESCCCBHHHHHHHH---HHCSSCCE
T ss_pred CCCccHHHHHHHH---HhCccceEeeccCCCCCHHH---HHHHHhcCcccCeeeccCCCCcHHHHHHHH---HhcCccCe
Confidence 3 6665433332 34677888888888777654 344556777888888888877665555433 35777888
Q ss_pred EecCCC
Q psy3611 466 LVLEDD 471 (472)
Q Consensus 466 L~l~~~ 471 (472)
|+++++
T Consensus 518 L~ls~n 523 (592)
T 3ogk_B 518 LWVQGY 523 (592)
T ss_dssp EEEESC
T ss_pred eECcCC
Confidence 887765
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=9.6e-31 Score=279.24 Aligned_cols=379 Identities=20% Similarity=0.223 Sum_probs=242.5
Q ss_pred hcCCccEEeccCCCcchhhHHHHHHhhhc-CCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHH
Q psy3611 8 KLKTLEHVEMPQNGIYHVGITALSDAFEE-NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 86 (472)
Q Consensus 8 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l 86 (472)
.+++|++|++++|.+.. .+|..+.. +++|++|++++|.+. +..+ ..+..+++|++|++++|.+.+. +
T Consensus 267 ~l~~L~~L~L~~n~l~~----~ip~~~~~~~~~L~~L~Ls~n~l~--~~~p--~~~~~l~~L~~L~L~~n~l~~~----i 334 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTG----EIPDFLSGACDTLTGLDLSGNHFY--GAVP--PFFGSCSLLESLALSSNNFSGE----L 334 (768)
T ss_dssp CCTTCCEEECCSSEEEE----SCCCCSCTTCTTCSEEECCSSEEE--ECCC--GGGGGCTTCCEEECCSSEEEEE----C
T ss_pred ccCCCCEEECcCCccCC----ccCHHHHhhcCcCCEEECcCCcCC--Cccc--hHHhcCCCccEEECCCCcccCc----C
Confidence 46788888888887764 34555544 378888888888764 4445 5677788888888888877642 3
Q ss_pred HH-HhhcCCcccEEECcCCccCcchHHHHHHHhhhCC-CccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCC
Q psy3611 87 AK-YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT-KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 164 (472)
Q Consensus 87 ~~-~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~-~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~ 164 (472)
+. .+..+++|++|++++|.+++. ++..+..++ +|++|++++|.+.+..+..+... .++.++.|.+.... .
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~--~~~~L~~L~L~~n~--l 406 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFSGE----LPESLTNLSASLLTLDLSSNNFSGPILPNLCQN--PKNTLQELYLQNNG--F 406 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEEEC----CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS--TTCCCCEEECCSSE--E
T ss_pred CHHHHhcCCCCCEEeCcCCccCcc----ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc--ccCCccEEECCCCc--c
Confidence 32 356678888888888877642 444455555 77888887777655433322210 02233333332211 0
Q ss_pred CccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHH
Q psy3611 165 SDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244 (472)
Q Consensus 165 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 244 (472)
.+.++. ......+++.++++.- ......+..+..+++|++|++++|.+.......
T Consensus 407 ~~~~p~----------~l~~l~~L~~L~Ls~N---------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 407 TGKIPP----------TLSNCSELVSLHLSFN---------------YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp EEECCG----------GGGGCTTCCEEECCSS---------------EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred ccccCH----------HHhcCCCCCEEECcCC---------------cccCcccHHHhcCCCCCEEECCCCcccCcCCHH
Confidence 011111 1111222222222110 111122233556688888888888886443333
Q ss_pred HHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCcc
Q psy3611 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLE 324 (472)
Q Consensus 245 l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~ 324 (472)
+. .+++|++|++++|.++.. .+..++.+++|+.|++++|.+.+. ++.++..+++|+
T Consensus 462 ~~------~l~~L~~L~L~~N~l~~~--------------~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~ 517 (768)
T 3rgz_A 462 LM------YVKTLETLILDFNDLTGE--------------IPSGLSNCTNLNWISLSNNRLTGE----IPKWIGRLENLA 517 (768)
T ss_dssp GG------GCTTCCEEECCSSCCCSC--------------CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCC
T ss_pred Hc------CCCCceEEEecCCcccCc--------------CCHHHhcCCCCCEEEccCCccCCc----CChHHhcCCCCC
Confidence 32 346888888888887632 122334467888888888888764 667777888888
Q ss_pred EEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcc---cHHH---------------------------------
Q psy3611 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYK---GAIP--------------------------------- 368 (472)
Q Consensus 325 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~---~~~~--------------------------------- 368 (472)
.|++++|++.. .++..+..+++|++|++++|.+... ....
T Consensus 518 ~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 518 ILKLSNNSFSG----NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp EEECCSSCCEE----ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred EEECCCCcccC----cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence 88888888762 2356777888888888888865410 0000
Q ss_pred ------------------------------HHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCC
Q psy3611 369 ------------------------------LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 418 (472)
Q Consensus 369 ------------------------------l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 418 (472)
.+..+..+++|+.|++++|.+++. ++..+..++.|+.|+|++|.++
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~ 669 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY----IPKEIGSMPYLFILNLGHNDIS 669 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC----CCGGGGGCTTCCEEECCSSCCC
T ss_pred cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc----CCHHHhccccCCEEeCcCCccC
Confidence 001223356788999999988865 7788888899999999999888
Q ss_pred chhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 419 VQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 419 ~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
.. +|..+..++.|++|++++|++++... ..+..++.|+.|+++||
T Consensus 670 g~----ip~~l~~L~~L~~LdLs~N~l~g~ip----~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 670 GS----IPDEVGDLRGLNILDLSSNKLDGRIP----QAMSALTMLTEIDLSNN 714 (768)
T ss_dssp SC----CCGGGGGCTTCCEEECCSSCCEECCC----GGGGGCCCCSEEECCSS
T ss_pred CC----CChHHhCCCCCCEEECCCCcccCcCC----hHHhCCCCCCEEECcCC
Confidence 65 78888899999999999998875433 45566889999999887
No 9
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=2.6e-26 Score=238.45 Aligned_cols=157 Identities=11% Similarity=0.127 Sum_probs=77.4
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCC--C----CCCC----hhHHHHHHHHHhcCCCccEEEccCCCCC
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP--Q----NGIY----HVGITALSDAFEENKNLRHLNLNDNTIT 362 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~--~----~~i~----~~~~~~l~~~l~~~~~L~~L~l~~n~l~ 362 (472)
++|+.|.++.+.+++.+... ....+++|++|+++ + +.++ +.++. ..+..+++|++|++++ .++
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~---l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALIT---IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG---AIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHH---HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH---HHHHHCTTCCEEECCS-SCC
T ss_pred hhHHHHHHhcCCcCHHHHHH---HHhhCCCcceeEeecccCCCcccccCCchhhHHH---HHHhhCCCccEEeecC-ccc
Confidence 44555555555555432221 12235556666655 2 3444 33322 2234455666666655 444
Q ss_pred cccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccC
Q psy3611 363 YKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 442 (472)
Q Consensus 363 ~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 442 (472)
+.+...+.. .+++|+.|++++|.+++.+...+. ..+++|+.|+|++|.+++.+. ......+++|++|++++
T Consensus 445 ~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~---~~~~~L~~L~L~~n~~~~~~~---~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 445 DKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVL---SGCDSLRKLEIRDCPFGDKAL---LANASKLETMRSLWMSS 515 (594)
T ss_dssp HHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHH---HHCTTCCEEEEESCSCCHHHH---HHTGGGGGGSSEEEEES
T ss_pred HHHHHHHHH---hchhccEeeccCCCCcHHHHHHHH---hcCCCcCEEECcCCCCcHHHH---HHHHHhCCCCCEEeeeC
Confidence 433322221 255666666666666655433322 335666666666666654432 22334456666666666
Q ss_pred CCCChhHHHHHHHHHHhCCceeEEec
Q psy3611 443 NQFGEEGVEEMEKLMKSFGMAAALVL 468 (472)
Q Consensus 443 n~i~~~~~~~l~~~l~~~~~L~~L~l 468 (472)
|+++..+++.+. +.+|.++...+
T Consensus 516 ~~~~~~~~~~l~---~~lp~l~i~~~ 538 (594)
T 2p1m_B 516 CSVSFGACKLLG---QKMPKLNVEVI 538 (594)
T ss_dssp SCCBHHHHHHHH---HHCTTEEEEEE
T ss_pred CCCCHHHHHHHH---HhCCCCEEEEe
Confidence 666555555443 23455544443
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=5.1e-29 Score=250.35 Aligned_cols=363 Identities=18% Similarity=0.197 Sum_probs=231.2
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++|++|+|++|.+.. ..+..+..+++|++|++++|.+. +.++. ..+..+++|++|++++|.+++. .+..
T Consensus 30 ~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~--~~i~~-~~~~~l~~L~~L~Ls~n~l~~~----~~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPG--LVIRN-NTFRGLSSLIILKLDYNQFLQL----ETGA 98 (455)
T ss_dssp TTCCEEECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTT--CEECT-TTTTTCTTCCEEECTTCTTCEE----CTTT
T ss_pred CccCEEEecCCccCc----CChhHhccCccccEEECcCCccc--ceECc-ccccccccCCEEeCCCCccCcc----Chhh
Confidence 679999999998886 23677888999999999999774 22221 4678889999999999998864 3566
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHH--hhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCC--CCCC
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKA--MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE--GECS 165 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~--l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~--~~~~ 165 (472)
++.+++|++|++++|.+++ .++.. +..+++|++|++++|.+....+..+ +..++.|+.|.+.... +...
T Consensus 99 ~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDG----AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF---FLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp TTTCTTCCEEECTTSCCBT----HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG---GGGCTTCCEEECTTCCBSCCCT
T ss_pred ccCcccCCEEeCCCCCCCc----cccCcccccCcccCCEEECCCCccCccCcccc---cCCCCcccEEeCCCCcccccCh
Confidence 7778999999999999886 34444 7788999999999998876433321 2224455444332211 1000
Q ss_pred ccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHH
Q psy3611 166 DEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGL 245 (472)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 245 (472)
..+.. + ....|+.|++++|.+.......+
T Consensus 172 ~~l~~--------------------------------------------------l-~~~~L~~L~l~~n~l~~~~~~~~ 200 (455)
T 3v47_A 172 EDLLN--------------------------------------------------F-QGKHFTLLRLSSITLQDMNEYWL 200 (455)
T ss_dssp TTSGG--------------------------------------------------G-TTCEEEEEECTTCBCTTCSTTCT
T ss_pred hhhhc--------------------------------------------------c-ccccccccccccCcccccchhhc
Confidence 00000 0 12688999999998855432221
Q ss_pred HHHH--hccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCC-------------------------CCcceeEE
Q psy3611 246 ADLL--RSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG-------------------------SPLALKVF 298 (472)
Q Consensus 246 ~~~l--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~-------------------------~~~~L~~L 298 (472)
.... ....+++|++|++++|.++......+...+.......-.+. .+++|+.|
T Consensus 201 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 280 (455)
T 3v47_A 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC 280 (455)
T ss_dssp THHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEE
T ss_pred cccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEE
Confidence 1110 01234689999999999988776666554322100000000 12467777
Q ss_pred EcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCC
Q psy3611 299 IAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPS 378 (472)
Q Consensus 299 ~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~ 378 (472)
++++|.+... .+..+..+++|++|++++|.+.... +..+.++++|++|++++|.++... +..+..+++
T Consensus 281 ~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~ 348 (455)
T 3v47_A 281 DLSKSKIFAL----LKSVFSHFTDLEQLTLAQNEINKID----DNAFWGLTHLLKLNLSQNFLGSID----SRMFENLDK 348 (455)
T ss_dssp ECCSSCCCEE----CTTTTTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCEEC----GGGGTTCTT
T ss_pred EecCcccccc----chhhcccCCCCCEEECCCCcccccC----hhHhcCcccCCEEECCCCccCCcC----hhHhcCccc
Confidence 7777776653 4445666777777777777776432 345566777777777777776322 245666777
Q ss_pred CcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhH--HHHHHHH
Q psy3611 379 LAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG--VEEMEKL 456 (472)
Q Consensus 379 L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~--~~~l~~~ 456 (472)
|++|++++|.+++. .+..+..+++|+.|++++|.++.. .+..+..+++|++|++++|+++... ...+..+
T Consensus 349 L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~ 420 (455)
T 3v47_A 349 LEVLDLSYNHIRAL----GDQSFLGLPNLKELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 420 (455)
T ss_dssp CCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred CCEEECCCCccccc----ChhhccccccccEEECCCCccccC----CHhHhccCCcccEEEccCCCcccCCCcchHHHHH
Confidence 77777777777653 345566677777777777777653 1234566777777777777776543 3445555
Q ss_pred HHhCC
Q psy3611 457 MKSFG 461 (472)
Q Consensus 457 l~~~~ 461 (472)
++...
T Consensus 421 l~~~~ 425 (455)
T 3v47_A 421 LNKNS 425 (455)
T ss_dssp HHHTT
T ss_pred HHhCc
Confidence 55443
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2.4e-28 Score=245.51 Aligned_cols=339 Identities=20% Similarity=0.192 Sum_probs=234.3
Q ss_pred HHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchh
Q psy3611 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG 82 (472)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~ 82 (472)
++.|.++++|++|++++|.+... ..+..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.+++.
T Consensus 47 ~~~~~~l~~L~~L~L~~n~~~~~---i~~~~~~~l~~L~~L~Ls~n~l~--~~~~--~~~~~l~~L~~L~L~~n~l~~~- 118 (455)
T 3v47_A 47 ETSFSRLQDLQFLKVEQQTPGLV---IRNNTFRGLSSLIILKLDYNQFL--QLET--GAFNGLANLEVLTLTQCNLDGA- 118 (455)
T ss_dssp TTTTSSCTTCCEEECCCCSTTCE---ECTTTTTTCTTCCEEECTTCTTC--EECT--TTTTTCTTCCEEECTTSCCBTH-
T ss_pred hhHhccCccccEEECcCCcccce---ECcccccccccCCEEeCCCCccC--ccCh--hhccCcccCCEEeCCCCCCCcc-
Confidence 45788999999999999987521 11456888999999999999985 3334 5688999999999999999873
Q ss_pred HHHHHHH--hhcCCcccEEECcCCccCcchHHHHHHH-hhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhcc
Q psy3611 83 ASSIAKY--LTDNTTLEDVNLTCNEISVQGGLDLVKA-MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 159 (472)
Q Consensus 83 ~~~l~~~--l~~~~~L~~L~l~~~~i~~~~~~~l~~~-l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~ 159 (472)
++.. +..+++|++|++++|.+... .+.. +..+++|++|++++|.+....+..+... ..+.++.+.+..
T Consensus 119 ---~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~~~L~~L~l~~ 189 (455)
T 3v47_A 119 ---VLSGNFFKPLTSLEMLVLRDNNIKKI----QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF--QGKHFTLLRLSS 189 (455)
T ss_dssp ---HHHSSTTTTCTTCCEEECCSSBCCSC----CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG--TTCEEEEEECTT
T ss_pred ---ccCcccccCcccCCEEECCCCccCcc----CcccccCCCCcccEEeCCCCcccccChhhhhcc--cccccccccccc
Confidence 3343 77889999999999999863 2333 6789999999999998876544433321 012222322222
Q ss_pred CCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCCh
Q psy3611 160 DEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGP 239 (472)
Q Consensus 160 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 239 (472)
..-. .++. . .........+..+++|++|++++|.++.
T Consensus 190 n~l~---~~~~--------------------~--------------------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 226 (455)
T 3v47_A 190 ITLQ---DMNE--------------------Y--------------------WLGWEKCGNPFKNTSITTLDLSGNGFKE 226 (455)
T ss_dssp CBCT---TCST--------------------T--------------------CTTHHHHCCTTTTCEEEEEECTTSCCCH
T ss_pred Cccc---ccch--------------------h--------------------hccccccccccccceeeeEecCCCcccc
Confidence 1110 0000 0 0000000112234799999999999988
Q ss_pred hhHHHHHHHHhccCCCcceEEEeeCCCCChhHHH----------HHH----HHHHhh--------cccCcCCCCCcceeE
Q psy3611 240 IGVEGLADLLRSSCCFALEELKLNNNGLGITGCK----------LLS----KALHDC--------YESSKKEGSPLALKV 297 (472)
Q Consensus 240 ~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~----------~l~----~~l~~~--------~~~~~~~~~~~~L~~ 297 (472)
.....+...+. .++|+.|++++|.+...... .+. ..+... ...+..++.+++|+.
T Consensus 227 ~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 303 (455)
T 3v47_A 227 SMAKRFFDAIA---GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303 (455)
T ss_dssp HHHHHHHHHTT---TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cchhhhhcccc---ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCE
Confidence 88887777643 23566666665532211000 000 000000 112345778899999
Q ss_pred EEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCC
Q psy3611 298 FIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLP 377 (472)
Q Consensus 298 L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~ 377 (472)
|++++|.+.+. .+..+..+++|++|++++|.++... +..+..+++|++|++++|.++... +..+..++
T Consensus 304 L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~ 371 (455)
T 3v47_A 304 LTLAQNEINKI----DDNAFWGLTHLLKLNLSQNFLGSID----SRMFENLDKLEVLDLSYNHIRALG----DQSFLGLP 371 (455)
T ss_dssp EECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCCEEC----GGGGTTCTTCCEEECCSSCCCEEC----TTTTTTCT
T ss_pred EECCCCccccc----ChhHhcCcccCCEEECCCCccCCcC----hhHhcCcccCCEEECCCCcccccC----hhhccccc
Confidence 99999999863 3556778999999999999997432 456788999999999999998532 25678899
Q ss_pred CCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCch
Q psy3611 378 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 420 (472)
Q Consensus 378 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 420 (472)
+|++|++++|.+++. .+..+..+++|+.|++++|.+...
T Consensus 372 ~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 372 NLKELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccEEECCCCccccC----CHhHhccCCcccEEEccCCCcccC
Confidence 999999999999863 234567889999999999988765
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=7.7e-28 Score=245.94 Aligned_cols=173 Identities=21% Similarity=0.255 Sum_probs=103.2
Q ss_pred CCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCC
Q psy3611 253 CCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 332 (472)
Q Consensus 253 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 332 (472)
.+++|++|++++|.+++.. +..++.+++|+.|++++|.+.+ ...++..+..+++|+.|++++|.
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~--------------~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTV--------------FENCGHLTELETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp SCCCCCEEECCSSCCCTTT--------------TTTCCCCSSCCEEECCSSCCCB--HHHHHHHHTTCTTCCEEECCSSC
T ss_pred hCCcccEEEeECCccChhh--------------hhhhccCCCCCEEEccCCccCc--cccchHHHhhCCCCCEEECCCCc
Confidence 3456777777777765321 1233456677777777777763 22355566677777777777777
Q ss_pred CChhHHHHHHH-HHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEE
Q psy3611 333 IYHVGITALSD-AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVN 411 (472)
Q Consensus 333 i~~~~~~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~ 411 (472)
+... ++. .+..+++|++|++++|.++... +..+ .++|+.|++++|.++. ++..+..+++|+.|+
T Consensus 386 l~~~----l~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l--~~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 386 VSYD----EKKGDCSWTKSLLSLNMSSNILTDTI----FRCL--PPRIKVLDLHSNKIKS-----IPKQVVKLEALQELN 450 (520)
T ss_dssp CBCC----GGGCSCCCCTTCCEEECCSSCCCGGG----GGSC--CTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEE
T ss_pred CCcc----cccchhccCccCCEEECcCCCCCcch----hhhh--cccCCEEECCCCcccc-----cchhhhcCCCCCEEE
Confidence 6531 121 2445667777777777765311 1111 1567777777777764 555555677777777
Q ss_pred CcCCCCCchhHHHHHHH-HhcCCcccEEEccCCCCChhHH-HHH-HHHHHhCC
Q psy3611 412 LTCNEISVQGGLDLVKA-MKNKTKLKQINVSENQFGEEGV-EEM-EKLMKSFG 461 (472)
Q Consensus 412 L~~n~i~~~~~~~l~~~-l~~~~~L~~L~l~~n~i~~~~~-~~l-~~~l~~~~ 461 (472)
+++|.++. ++.. +..+++|++|++++|++..... ..+ ..+++..+
T Consensus 451 L~~N~l~~-----l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~ 498 (520)
T 2z7x_B 451 VASNQLKS-----VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 498 (520)
T ss_dssp CCSSCCCC-----CCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTT
T ss_pred CCCCcCCc-----cCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhcc
Confidence 77777765 3443 6667777777777777654322 333 55555443
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=5e-26 Score=220.22 Aligned_cols=304 Identities=20% Similarity=0.246 Sum_probs=217.6
Q ss_pred hhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHH
Q psy3611 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85 (472)
Q Consensus 6 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~ 85 (472)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+... + . +..+++|++|++++|.+++.
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-----~~-~~~~~~~L~~L~l~~n~i~~~---~--~-~~~l~~L~~L~L~~n~i~~~---- 103 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-----IQ-GIEYLTNLEYLNLNGNQITDI---S--P-LSNLVKLTNLYIGTNKITDI---- 103 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-----CT-TGGGCTTCCEEECCSSCCCCC---G--G-GTTCTTCCEEECCSSCCCCC----
T ss_pred chhcccccEEEEeCCcccc-----ch-hhhhcCCccEEEccCCccccc---h--h-hhcCCcCCEEEccCCcccCc----
Confidence 4567888999998888775 22 367788899999998887532 2 2 67888899999999888763
Q ss_pred HHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCC
Q psy3611 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECS 165 (472)
Q Consensus 86 l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~ 165 (472)
..+..+++|++|++++|.+.+. +. +..+++|++|++++|......+.
T Consensus 104 --~~~~~l~~L~~L~l~~n~i~~~-----~~-~~~l~~L~~L~l~~n~~~~~~~~------------------------- 150 (347)
T 4fmz_A 104 --SALQNLTNLRELYLNEDNISDI-----SP-LANLTKMYSLNLGANHNLSDLSP------------------------- 150 (347)
T ss_dssp --GGGTTCTTCSEEECTTSCCCCC-----GG-GTTCTTCCEEECTTCTTCCCCGG-------------------------
T ss_pred --hHHcCCCcCCEEECcCCcccCc-----hh-hccCCceeEEECCCCCCcccccc-------------------------
Confidence 2467788899999998888863 22 67788899999888743221100
Q ss_pred ccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHH
Q psy3611 166 DEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGL 245 (472)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 245 (472)
+..++.|++|++++|.+..... +
T Consensus 151 -------------------------------------------------------~~~l~~L~~L~l~~~~~~~~~~--~ 173 (347)
T 4fmz_A 151 -------------------------------------------------------LSNMTGLNYLTVTESKVKDVTP--I 173 (347)
T ss_dssp -------------------------------------------------------GTTCTTCCEEECCSSCCCCCGG--G
T ss_pred -------------------------------------------------------hhhCCCCcEEEecCCCcCCchh--h
Confidence 2335788888888888754432 1
Q ss_pred HHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccE
Q psy3611 246 ADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLER 325 (472)
Q Consensus 246 ~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~ 325 (472)
..+++|++|++++|.+++... +..+++|+.+++++|.+.+.. . +..+++|++
T Consensus 174 ------~~l~~L~~L~l~~n~l~~~~~----------------~~~l~~L~~L~l~~n~l~~~~-----~-~~~~~~L~~ 225 (347)
T 4fmz_A 174 ------ANLTDLYSLSLNYNQIEDISP----------------LASLTSLHYFTAYVNQITDIT-----P-VANMTRLNS 225 (347)
T ss_dssp ------GGCTTCSEEECTTSCCCCCGG----------------GGGCTTCCEEECCSSCCCCCG-----G-GGGCTTCCE
T ss_pred ------ccCCCCCEEEccCCccccccc----------------ccCCCccceeecccCCCCCCc-----h-hhcCCcCCE
Confidence 245678888888888764321 123567888888888877531 1 567788888
Q ss_pred EeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCC
Q psy3611 326 VEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405 (472)
Q Consensus 326 L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~ 405 (472)
|++++|+++... . +..+++|++|++++|.++.. ..+..+++|+.|++++|.+++. ..+..++
T Consensus 226 L~l~~n~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~ 287 (347)
T 4fmz_A 226 LKIGNNKITDLS-----P-LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLNNLS 287 (347)
T ss_dssp EECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCT
T ss_pred EEccCCccCCCc-----c-hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhcCCC
Confidence 888888887443 1 66788888888888887742 3566778888888888888762 3466778
Q ss_pred CCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 406 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+|+.|++++|.+... .+..+..+++|++|++++|++++... +..+++|+.|+++++
T Consensus 288 ~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNE----DMEVIGGLTNLTTLFLSQNHITDIRP------LASLSKMDSADFANQ 343 (347)
T ss_dssp TCSEEECCSSCCCGG----GHHHHHTCTTCSEEECCSSSCCCCGG------GGGCTTCSEESSSCC
T ss_pred CCCEEECcCCcCCCc----ChhHhhccccCCEEEccCCccccccC------hhhhhccceeehhhh
Confidence 888888888888765 45667778888888888888765432 556888888888876
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=7.4e-29 Score=258.93 Aligned_cols=352 Identities=14% Similarity=0.180 Sum_probs=225.9
Q ss_pred hHHHhhhcCCccEEeccCCCcchh-------------hHHHHHHhhh--cCCCCCeeeCCCCccCccchHHHHHHhccCC
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHV-------------GITALSDAFE--ENKKLRHLNLNDNTITYKGAIPLGQALSKLP 66 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~-------------~~~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~ 66 (472)
+|+.|.++++|++|+|++|.++.. ....+|..+. ++++|++|++++|.+. +.+| ..+..++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~--~~~p--~~l~~l~ 273 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL--TKLP--TFLKALP 273 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC--SSCC--TTTTTCS
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC--ccCh--HHHhcCC
Confidence 456789999999999999998862 0112788888 9999999999999875 6667 7789999
Q ss_pred CCcEEeccCcc-ccchhHHHHHHHhhcC------CcccEEECcCCccCcchHHHHHH--HhhhCCCccEEEecCCcCChh
Q psy3611 67 SLAILNLGDCL-LKSAGASSIAKYLTDN------TTLEDVNLTCNEISVQGGLDLVK--AMKNKTKLKQINVSENQFGEE 137 (472)
Q Consensus 67 ~L~~L~ls~~~-l~~~~~~~l~~~l~~~------~~L~~L~l~~~~i~~~~~~~l~~--~l~~~~~L~~L~l~~~~i~~~ 137 (472)
+|++|++++|. +++. .++..++.+ ++|++|++++|.++. ++. .+..+++|++|++++|.+.+.
T Consensus 274 ~L~~L~Ls~n~~l~~~---~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-----ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 274 EMQLINVACNRGISGE---QLKDDWQALADAPVGEKIQIIYIGYNNLKT-----FPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp SCCEEECTTCTTSCHH---HHHHHHHHHHHSGGGGTCCEEECCSSCCSS-----CCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred CCCEEECcCCCCCccc---cchHHHHhhhccccCCCCCEEECCCCcCCc-----cCchhhhccCCCCCEEeCcCCcCccc
Confidence 99999999998 8762 255555554 899999999999983 565 788899999999999988754
Q ss_pred hHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhh
Q psy3611 138 GVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQS 217 (472)
Q Consensus 138 ~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (472)
.+ .+..++.|+.|.+....-. .+|.
T Consensus 346 ip-----~~~~l~~L~~L~L~~N~l~---~lp~----------------------------------------------- 370 (636)
T 4eco_A 346 LP-----AFGSEIKLASLNLAYNQIT---EIPA----------------------------------------------- 370 (636)
T ss_dssp CC-----CCEEEEEESEEECCSSEEE---ECCT-----------------------------------------------
T ss_pred hh-----hhCCCCCCCEEECCCCccc---cccH-----------------------------------------------
Confidence 44 1233555555444322100 1111
Q ss_pred hhhhhcCCc-ccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCC------
Q psy3611 218 HMSLKTGAR-LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG------ 290 (472)
Q Consensus 218 ~~~~~~~~~-L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~------ 290 (472)
.+..+++ |++|++++|.++... .. +....+++|++|++++|.++... +..++
T Consensus 371 --~l~~l~~~L~~L~Ls~N~l~~lp-~~----~~~~~l~~L~~L~Ls~N~l~~~~--------------p~~l~~~~~~~ 429 (636)
T 4eco_A 371 --NFCGFTEQVENLSFAHNKLKYIP-NI----FDAKSVSVMSAIDFSYNEIGSVD--------------GKNFDPLDPTP 429 (636)
T ss_dssp --TSEEECTTCCEEECCSSCCSSCC-SC----CCTTCSSCEEEEECCSSCTTTTT--------------TCSSCTTCSSC
T ss_pred --hhhhhcccCcEEEccCCcCcccc-hh----hhhcccCccCEEECcCCcCCCcc--------------hhhhccccccc
Confidence 1233455 777777777775221 11 11122336777777777765321 11122
Q ss_pred -CCcceeEEEcCCCCCChhhHHHHHH-HHhcCCCccEEeCCCCCCChhHHHHHHHHHhcC-------CCccEEEccCCCC
Q psy3611 291 -SPLALKVFIAGRNRLENEGAKMLAA-VFKKLKTLERVEMPQNGIYHVGITALSDAFEEN-------KNLRHLNLNDNTI 361 (472)
Q Consensus 291 -~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~-------~~L~~L~l~~n~l 361 (472)
.+++|+.|++++|.+.. ++. .+..+++|+.|++++|+++... ...+... ++|++|++++|.+
T Consensus 430 ~~~~~L~~L~Ls~N~l~~-----lp~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 430 FKGINVSSINLSNNQISK-----FPKELFSTGSPLSSINLMGNMLTEIP----KNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp CCCCCEEEEECCSSCCCS-----CCTHHHHTTCCCSEEECCSSCCSBCC----SSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred ccCCCCCEEECcCCccCc-----CCHHHHccCCCCCEEECCCCCCCCcC----HHHhccccccccccCCccEEECcCCcC
Confidence 44577777777777763 333 3345677777777777766221 1111111 2677777777777
Q ss_pred CcccHHHHHHHhc--CCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECc------CCCCCchhHHHHHHHHhcCC
Q psy3611 362 TYKGAIPLGQALS--KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT------CNEISVQGGLDLVKAMKNKT 433 (472)
Q Consensus 362 ~~~~~~~l~~~l~--~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~------~n~i~~~~~~~l~~~l~~~~ 433 (472)
+. ++..+. .+++|+.|++++|.+++ ++..+..+++|+.|+++ +|.+... ++..+..++
T Consensus 501 ~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~----~p~~l~~l~ 566 (636)
T 4eco_A 501 TK-----LSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE----WPEGITLCP 566 (636)
T ss_dssp CB-----CCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCSSCCEEECCSCBCTTCCBCCCC----CCTTGGGCS
T ss_pred Cc-----cChhhhhccCCCcCEEECCCCCCCC-----cChhhhcCCCCCEEECCCCcccccCccccc----ChHHHhcCC
Confidence 62 234444 66777777777777764 55566667777777773 3444443 566667777
Q ss_pred cccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 434 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 434 ~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+|++|++++|+++.. .. .+ .++|+.|+++++
T Consensus 567 ~L~~L~Ls~N~l~~i-p~----~~--~~~L~~L~Ls~N 597 (636)
T 4eco_A 567 SLTQLQIGSNDIRKV-NE----KI--TPNISVLDIKDN 597 (636)
T ss_dssp SCCEEECCSSCCCBC-CS----CC--CTTCCEEECCSC
T ss_pred CCCEEECCCCcCCcc-CH----hH--hCcCCEEECcCC
Confidence 777777777776321 11 11 156777777765
No 15
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=6e-25 Score=228.19 Aligned_cols=396 Identities=15% Similarity=0.164 Sum_probs=270.1
Q ss_pred HHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCc-cCccchHHHHHHhccCCCCcEEeccCccccch
Q psy3611 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNT-ITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 81 (472)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~ 81 (472)
+..+..+++|++|+|++|.+++.++..+.. .+++|++|++.+|. ++ ...+......+++|++|++++|.+++.
T Consensus 98 ~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~---~~~~L~~L~L~~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~i~~~ 171 (594)
T 2p1m_B 98 EAMSSSYTWLEEIRLKRMVVTDDCLELIAK---SFKNFKVLVLSSCEGFS---TDGLAAIAATCRNLKELDLRESDVDDV 171 (594)
T ss_dssp HHHHHHCTTCCEEEEESCBCCHHHHHHHHH---HCTTCCEEEEESCEEEE---HHHHHHHHHHCTTCCEEECTTCEEECC
T ss_pred HHHHHhCCCCCeEEeeCcEEcHHHHHHHHH---hCCCCcEEeCCCcCCCC---HHHHHHHHHhCCCCCEEeCcCCccCCc
Confidence 456678999999999999988766444432 47899999999994 43 222325566899999999999998876
Q ss_pred hHHHHHHHhhcCCcccEEECcCCc--cCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhcc
Q psy3611 82 GASSIAKYLTDNTTLEDVNLTCNE--ISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 159 (472)
Q Consensus 82 ~~~~l~~~l~~~~~L~~L~l~~~~--i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~ 159 (472)
+...++.....+++|++|++++|. +++. .+......+++|++|++++|.. .. .+...+..++.|+.|....
T Consensus 172 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~---~l~~l~~~~~~L~~L~L~~~~~-~~---~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 172 SGHWLSHFPDTYTSLVSLNISCLASEVSFS---ALERLVTRCPNLKSLKLNRAVP-LE---KLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp CGGGGGGSCTTCCCCCEEECTTCCSCCCHH---HHHHHHHHCTTCCEEECCTTSC-HH---HHHHHHHHCTTCSEEECSB
T ss_pred chHHHHHHhhcCCcCcEEEecccCCcCCHH---HHHHHHHhCCCCcEEecCCCCc-HH---HHHHHHhcCCcceEccccc
Confidence 655565555577899999999986 4443 4555556689999999998832 11 2555556677777776554
Q ss_pred CCCCCCc-cccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCC
Q psy3611 160 DEGECSD-EEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFG 238 (472)
Q Consensus 160 ~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 238 (472)
+...... .+...+. ......++..++ .........+...+..+++|++|++++|.++
T Consensus 245 ~~~~~~~~~~~~l~~-------~l~~~~~L~~Ls---------------~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 245 YTAEVRPDVYSGLSV-------ALSGCKELRCLS---------------GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp CCCCCCHHHHHHHHH-------HHHTCTTCCEEE---------------CCBTCCGGGGGGGHHHHTTCCEEECTTCCCC
T ss_pred ccCccchhhHHHHHH-------HHhcCCCccccc---------------CCcccchhhHHHHHHhhCCCCEEEccCCCCC
Confidence 4321111 0110000 001111111110 0000111223333446789999999999987
Q ss_pred hhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEc---------CCCCCChhh
Q psy3611 239 PIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA---------GRNRLENEG 309 (472)
Q Consensus 239 ~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l---------~~~~l~~~~ 309 (472)
+.+...+. ..|++|++|++++| +++.+...++.. +++|+.|++ ..+.+++.+
T Consensus 303 ~~~l~~~~-----~~~~~L~~L~l~~~-~~~~~l~~l~~~-------------~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 303 SYDLVKLL-----CQCPKLQRLWVLDY-IEDAGLEVLAST-------------CKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHHHHHHH-----TTCTTCCEEEEEGG-GHHHHHHHHHHH-------------CTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred HHHHHHHH-----hcCCCcCEEeCcCc-cCHHHHHHHHHh-------------CCCCCEEEEecCcccccccCCCCCHHH
Confidence 66544433 35689999999998 776666665543 468999999 345677665
Q ss_pred HHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEcc--C----CCCC----cccHHHHHHHhcCCCCC
Q psy3611 310 AKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN--D----NTIT----YKGAIPLGQALSKLPSL 379 (472)
Q Consensus 310 ~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~--~----n~l~----~~~~~~l~~~l~~~~~L 379 (472)
...+ ...+++|++|.+..+.+++.++..+. ..+++|+.|+++ + +.++ +.| +...+..+++|
T Consensus 364 l~~l---~~~~~~L~~L~~~~~~l~~~~~~~l~---~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~---~~~l~~~~~~L 434 (594)
T 2p1m_B 364 LVSV---SMGCPKLESVLYFCRQMTNAALITIA---RNRPNMTRFRLCIIEPKAPDYLTLEPLDIG---FGAIVEHCKDL 434 (594)
T ss_dssp HHHH---HHHCTTCCEEEEEESCCCHHHHHHHH---HHCTTCCEEEEEESSTTCCCTTTCCCTHHH---HHHHHHHCTTC
T ss_pred HHHH---HHhchhHHHHHHhcCCcCHHHHHHHH---hhCCCcceeEeecccCCCcccccCCchhhH---HHHHHhhCCCc
Confidence 4433 34689999999999999987654443 357899999999 4 5666 333 33446678999
Q ss_pred cEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHh
Q psy3611 380 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459 (472)
Q Consensus 380 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~ 459 (472)
+.|++++ .+++.+...+.. .+++|+.|++++|.+++.+...+. ..+++|++|++++|++++.+...+. ..
T Consensus 435 ~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~---~~~~~L~~L~L~~n~~~~~~~~~~~---~~ 504 (594)
T 2p1m_B 435 RRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVL---SGCDSLRKLEIRDCPFGDKALLANA---SK 504 (594)
T ss_dssp CEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHH---HHCTTCCEEEEESCSCCHHHHHHTG---GG
T ss_pred cEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCcHHHHHHHH---hcCCCcCEEECcCCCCcHHHHHHHH---Hh
Confidence 9999987 888876544433 478999999999999887644332 5689999999999999777665443 45
Q ss_pred CCceeEEecCCC
Q psy3611 460 FGMAAALVLEDD 471 (472)
Q Consensus 460 ~~~L~~L~l~~~ 471 (472)
+++|+.|+++++
T Consensus 505 l~~L~~L~l~~~ 516 (594)
T 2p1m_B 505 LETMRSLWMSSC 516 (594)
T ss_dssp GGGSSEEEEESS
T ss_pred CCCCCEEeeeCC
Confidence 789999999876
No 16
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.1e-25 Score=233.78 Aligned_cols=369 Identities=17% Similarity=0.163 Sum_probs=246.6
Q ss_pred cCC-ccEEeccCCC-cchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHH
Q psy3611 9 LKT-LEHVEMPQNG-IYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 86 (472)
Q Consensus 9 ~~~-L~~L~L~~~~-l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l 86 (472)
+++ |++|+|++|. +...+ ++.....+++|++|++++|.+.+.+...+......+++|++|++++|.+++.....+
T Consensus 136 ~~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l 212 (592)
T 3ogk_B 136 RADDLETLKLDKCSGFTTDG---LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212 (592)
T ss_dssp HGGGCCEEEEESCEEEEHHH---HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH
T ss_pred ccccCcEEECcCCCCcCHHH---HHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH
Confidence 455 8888888875 33333 455556778888888888887655543333566778888888888888874444567
Q ss_pred HHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCC----------------------hhhHHHHHH
Q psy3611 87 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG----------------------EEGVEEMEK 144 (472)
Q Consensus 87 ~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~----------------------~~~~~~l~~ 144 (472)
+..+.++++|++|++++|.+.+ ++..+..+++|+.|+++..... ......+..
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~ 287 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG
T ss_pred HHHHhhCCCCcEEeccCccHHH-----HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH
Confidence 7777778888888888887764 4566677777777777632111 000011111
Q ss_pred HHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcC
Q psy3611 145 LMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTG 224 (472)
Q Consensus 145 ~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (472)
.+..+++|+.|.+.... .........+..+
T Consensus 288 ~~~~~~~L~~L~Ls~~~--------------------------------------------------l~~~~~~~~~~~~ 317 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYAL--------------------------------------------------LETEDHCTLIQKC 317 (592)
T ss_dssp GGGGGGGCCEEEETTCC--------------------------------------------------CCHHHHHHHHTTC
T ss_pred HHhhcCCCcEEecCCCc--------------------------------------------------CCHHHHHHHHHhC
Confidence 22234444444333221 0111122345678
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEee-----------CCCCChhHHHHHHHHHHhhcccCcCCCCCc
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLN-----------NNGLGITGCKLLSKALHDCYESSKKEGSPL 293 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~-----------~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~ 293 (472)
++|++|+++ +.+++.+...++. .|++|++|+++ .+.+++.+...+... |+
T Consensus 318 ~~L~~L~L~-~~~~~~~l~~~~~-----~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~-------------~~ 378 (592)
T 3ogk_B 318 PNLEVLETR-NVIGDRGLEVLAQ-----YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG-------------CQ 378 (592)
T ss_dssp TTCCEEEEE-GGGHHHHHHHHHH-----HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH-------------CT
T ss_pred cCCCEEecc-CccCHHHHHHHHH-----hCCCCCEEEeecCccccccccccCccCHHHHHHHHhh-------------Cc
Confidence 999999998 5566666555554 35789999999 467888877766543 57
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCC----CCCCChhHH-HHHHHHHhcCCCccEEEccCCC--CCcccH
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP----QNGIYHVGI-TALSDAFEENKNLRHLNLNDNT--ITYKGA 366 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~----~~~i~~~~~-~~l~~~l~~~~~L~~L~l~~n~--l~~~~~ 366 (472)
+|+.|+++.+.+++.+...+. ..+++|++|+++ .+.+++... ..+...+.++++|++|+++.|. +++.+.
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIG---TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHH---HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred cCeEEEeecCCccHHHHHHHH---hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 899999998999886544332 358899999996 567765200 0233445678999999998654 665443
Q ss_pred HHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 367 IPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 367 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
. .....+++|++|++++|.+++.+ ++..+..+++|+.|+|++|.+++.+ ++..+..+++|++|++++|+++
T Consensus 456 ~---~~~~~~~~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 456 S---YIGQYSPNVRWMLLGYVGESDEG---LMEFSRGCPNLQKLEMRGCCFSERA---IAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp H---HHHHSCTTCCEEEECSCCSSHHH---HHHHHTCCTTCCEEEEESCCCBHHH---HHHHHHHCSSCCEEEEESCBCC
T ss_pred H---HHHHhCccceEeeccCCCCCHHH---HHHHHhcCcccCeeeccCCCCcHHH---HHHHHHhcCccCeeECcCCcCC
Confidence 3 33345889999999999998765 4455577899999999999987664 3444567899999999999999
Q ss_pred hhHHHHHHHHHHhCCceeEEecC
Q psy3611 447 EEGVEEMEKLMKSFGMAAALVLE 469 (472)
Q Consensus 447 ~~~~~~l~~~l~~~~~L~~L~l~ 469 (472)
+.+.+.+.+ .+|.+....+.
T Consensus 527 ~~~~~~l~~---~~p~l~~~~~~ 546 (592)
T 3ogk_B 527 MTGQDLMQM---ARPYWNIELIP 546 (592)
T ss_dssp TTCTTGGGG---CCTTEEEEEEC
T ss_pred HHHHHHHHH---hCCCcEEEEec
Confidence 888776654 36666555443
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=2.7e-29 Score=268.09 Aligned_cols=373 Identities=19% Similarity=0.166 Sum_probs=253.8
Q ss_pred hhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHH
Q psy3611 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85 (472)
Q Consensus 6 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~ 85 (472)
+.++++|++|++++|.+... ..+..+++|++|++++|.+. +..+ . +..+++|++|++++|.+++.
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~------~~~~~l~~L~~L~Ls~n~l~--~~~~--~-l~~l~~L~~L~Ls~n~l~~~---- 238 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGD------VDVSRCVNLEFLDVSSNNFS--TGIP--F-LGDCSALQHLDISGNKLSGD---- 238 (768)
T ss_dssp TTCCTTCCEEECCSSEEESC------CBCTTCTTCCEEECCSSCCC--SCCC--B-CTTCCSCCEEECCSSCCCSC----
T ss_pred hccCCCCCEEECCCCccccc------CCcccCCcCCEEECcCCcCC--CCCc--c-cccCCCCCEEECcCCcCCCc----
Confidence 78899999999999988752 12367899999999999885 3444 3 78899999999999999873
Q ss_pred HHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCC
Q psy3611 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECS 165 (472)
Q Consensus 86 l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~ 165 (472)
++..++.+++|++|++++|.+.+. ++.. .+++|++|++++|.+.+..+..+... ++.|+.|.+....- .
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~---~~~L~~L~Ls~n~l--~ 307 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGP----IPPL--PLKSLQYLSLAENKFTGEIPDFLSGA---CDTLTGLDLSGNHF--Y 307 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEES----CCCC--CCTTCCEEECCSSEEEESCCCCSCTT---CTTCSEEECCSSEE--E
T ss_pred ccHHHhcCCCCCEEECCCCcccCc----cCcc--ccCCCCEEECcCCccCCccCHHHHhh---cCcCCEEECcCCcC--C
Confidence 677888899999999999988752 2222 67899999999998775544433321 24555544432210 0
Q ss_pred ccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHH
Q psy3611 166 DEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGL 245 (472)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 245 (472)
+.++. .......++.+++..-. .........+..+++|++|++++|.+.......+
T Consensus 308 ~~~p~----------~~~~l~~L~~L~L~~n~--------------l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 363 (768)
T 3rgz_A 308 GAVPP----------FFGSCSLLESLALSSNN--------------FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363 (768)
T ss_dssp ECCCG----------GGGGCTTCCEEECCSSE--------------EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH
T ss_pred Cccch----------HHhcCCCccEEECCCCc--------------ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH
Confidence 01111 01111222222221100 0001111224455677777777776643333333
Q ss_pred HHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCC--CcceeEEEcCCCCCChhhHHHHHHHHhcCCCc
Q psy3611 246 ADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS--PLALKVFIAGRNRLENEGAKMLAAVFKKLKTL 323 (472)
Q Consensus 246 ~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~--~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L 323 (472)
.... ++|++|++++|.+++.. +..++. +++|+.|++++|.+.+. ++..+..+++|
T Consensus 364 ~~l~-----~~L~~L~Ls~N~l~~~~--------------~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L 420 (768)
T 3rgz_A 364 TNLS-----ASLLTLDLSSNNFSGPI--------------LPNLCQNPKNTLQELYLQNNGFTGK----IPPTLSNCSEL 420 (768)
T ss_dssp HHHT-----TTCSEEECCSSEEEEEC--------------CTTTTCSTTCCCCEEECCSSEEEEE----CCGGGGGCTTC
T ss_pred Hhhh-----cCCcEEEccCCCcCCCc--------------ChhhhhcccCCccEEECCCCccccc----cCHHHhcCCCC
Confidence 3320 25677777766654221 122222 56789999999988753 66677888999
Q ss_pred cEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhc
Q psy3611 324 ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403 (472)
Q Consensus 324 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~ 403 (472)
+.|++++|.++. .++..+..+++|++|++++|.+... ++..+..+++|++|++++|.+.+. ++..+..
T Consensus 421 ~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~ 488 (768)
T 3rgz_A 421 VSLHLSFNYLSG----TIPSSLGSLSKLRDLKLWLNMLEGE----IPQELMYVKTLETLILDFNDLTGE----IPSGLSN 488 (768)
T ss_dssp CEEECCSSEEES----CCCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGG
T ss_pred CEEECcCCcccC----cccHHHhcCCCCCEEECCCCcccCc----CCHHHcCCCCceEEEecCCcccCc----CCHHHhc
Confidence 999999998763 2356677889999999999988732 336677888999999999998864 6777888
Q ss_pred CCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 404 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+++|+.|++++|.+... ++..+..+++|++|++++|++++... ..+..+++|+.|+++++
T Consensus 489 l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGE----IPKWIGRLENLAILKLSNNSFSGNIP----AELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCEEECC----GGGGGCTTCCEEECCSS
T ss_pred CCCCCEEEccCCccCCc----CChHHhcCCCCCEEECCCCcccCcCC----HHHcCCCCCCEEECCCC
Confidence 89999999999988864 67788889999999999998864433 34566899999999876
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=7.1e-28 Score=247.91 Aligned_cols=109 Identities=21% Similarity=0.267 Sum_probs=67.9
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++|++|++++|.++.. .+..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.+++. .+..
T Consensus 26 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~--~~~~--~~~~~l~~L~~L~Ls~n~l~~~----~~~~ 93 (549)
T 2z81_A 26 AAMKSLDLSFNKITYI----GHGDLRACANLQVLILKSSRIN--TIEG--DAFYSLGSLEHLDLSDNHLSSL----SSSW 93 (549)
T ss_dssp TTCCEEECCSSCCCEE----CSSTTSSCTTCCEEECTTSCCC--EECT--TTTTTCTTCCEEECTTSCCCSC----CHHH
T ss_pred CCccEEECcCCccCcc----ChhhhhcCCcccEEECCCCCcC--ccCh--hhccccccCCEEECCCCccCcc----CHHH
Confidence 4677777777776652 2445666777777777777664 2333 4566677777777777777653 2334
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCc
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 133 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~ 133 (472)
++.+++|++|++++|.+...+ ++..+..+++|++|++++|.
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~---~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLG---VTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSC---SSCSCTTCTTCCEEEEEESS
T ss_pred hccCCCCcEEECCCCcccccc---hhhhhhccCCccEEECCCCc
Confidence 556677777777777666321 23345566677777777665
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=3.4e-28 Score=253.32 Aligned_cols=125 Identities=26% Similarity=0.276 Sum_probs=91.2
Q ss_pred HHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchh
Q psy3611 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG 82 (472)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~ 82 (472)
+..|.++++|++|++++|.+.. ..+..|..+++|++|++++|.+. +..+ ..+..+++|++|++++|.+++..
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~--~~~~--~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYW----IHEDTFQSQHRLDTLVLTANPLI--FMAE--TALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCS--EECT--TTTSSCTTCCEEECTTSCCSCGG
T ss_pred hhHhccCccceEEECCCCccce----eChhhccCccccCeeeCCCCccc--ccCh--hhhcccccccEeeccccCcccCC
Confidence 4568889999999999998876 33677888899999999998875 3334 56788889999999998887632
Q ss_pred HHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHH
Q psy3611 83 ASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 143 (472)
Q Consensus 83 ~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 143 (472)
+..++.+++|++|++++|.+.... ++. +..+++|++|++++|.+....+..+.
T Consensus 122 ----~~~~~~l~~L~~L~L~~n~l~~~~---~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~ 174 (606)
T 3t6q_A 122 ----FIPLHNQKTLESLYLGSNHISSIK---LPK-GFPTEKLKVLDFQNNAIHYLSKEDMS 174 (606)
T ss_dssp ----GSCCTTCTTCCEEECCSSCCCCCC---CCT-TCCCTTCCEEECCSSCCCEECHHHHH
T ss_pred ----cchhccCCcccEEECCCCcccccC---ccc-ccCCcccCEEEcccCcccccChhhhh
Confidence 234567788888888888887521 122 22377888888888877765444443
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=2.5e-28 Score=254.33 Aligned_cols=205 Identities=19% Similarity=0.183 Sum_probs=125.0
Q ss_pred hcCCcccEEeCCCCCCChhh--HHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEE
Q psy3611 222 KTGARLVELDLSDNAFGPIG--VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299 (472)
Q Consensus 222 ~~~~~L~~L~l~~~~l~~~~--~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~ 299 (472)
..+++|++|++++|.++... ...+. .+++|++|++++|.++.. +..+..+++|+.|+
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~------~~~~L~~L~L~~n~l~~~---------------~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDL------GTNSLRHLDLSFNGAIIM---------------SANFMGLEELQHLD 405 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHH------CCSCCCEEECCSCSEEEE---------------CCCCTTCTTCCEEE
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhc------cCCcccEeECCCCccccc---------------hhhccCCCCCCeeE
Confidence 35567777777777764332 22221 345777777777765421 12344566777777
Q ss_pred cCCCCCChhhHHHHH-HHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCC
Q psy3611 300 AGRNRLENEGAKMLA-AVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPS 378 (472)
Q Consensus 300 l~~~~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~ 378 (472)
+++|.+... .+ ..+..+++|+.|++++|.+... .+..+.++++|++|++++|.+.... ++..+..+++
T Consensus 406 l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~ 474 (606)
T 3vq2_A 406 FQHSTLKRV----TEFSAFLSLEKLLYLDISYTNTKID----FDGIFLGLTSLNTLKMAGNSFKDNT---LSNVFANTTN 474 (606)
T ss_dssp CTTSEEEST----TTTTTTTTCTTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTT
T ss_pred CCCCccCCc----cChhhhhccccCCEEECcCCCCCcc----chhhhcCCCCCCEEECCCCcCCCcc---hHHhhccCCC
Confidence 777766542 22 3455667777777777776532 2345566777777777777665311 1244556677
Q ss_pred CcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHH
Q psy3611 379 LAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMK 458 (472)
Q Consensus 379 L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~ 458 (472)
|+.|++++|.+++. .+..+..+++|+.|++++|.+... .+..+..+++|++|++++|+++. +...+.
T Consensus 475 L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~-----~p~~~~ 541 (606)
T 3vq2_A 475 LTFLDLSKCQLEQI----SWGVFDTLHRLQLLNMSHNNLLFL----DSSHYNQLYSLSTLDCSFNRIET-----SKGILQ 541 (606)
T ss_dssp CCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCSCE----EGGGTTTCTTCCEEECTTSCCCC-----EESCGG
T ss_pred CCEEECCCCcCCcc----ChhhhcccccCCEEECCCCcCCCc----CHHHccCCCcCCEEECCCCcCcc-----cCHhHh
Confidence 77777777777653 345566667777777777777663 35566667777777777777652 122244
Q ss_pred hCC-ceeEEecCCC
Q psy3611 459 SFG-MAAALVLEDD 471 (472)
Q Consensus 459 ~~~-~L~~L~l~~~ 471 (472)
..+ .|+.|++++|
T Consensus 542 ~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 542 HFPKSLAFFNLTNN 555 (606)
T ss_dssp GSCTTCCEEECCSC
T ss_pred hhcccCcEEEccCC
Confidence 555 3777777665
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=2.9e-28 Score=253.79 Aligned_cols=396 Identities=18% Similarity=0.172 Sum_probs=232.6
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
+++++|++++|.++. ..+..+..+++|++|++++|.+. +..+ ..|..+++|++|++++|.+.+. .+..
T Consensus 33 ~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~--~~~~--~~~~~l~~L~~L~Ls~n~l~~~----~~~~ 100 (606)
T 3t6q_A 33 NSTECLEFSFNVLPT----IQNTTFSRLINLTFLDLTRCQIY--WIHE--DTFQSQHRLDTLVLTANPLIFM----AETA 100 (606)
T ss_dssp TTCCEEECTTCCCSE----ECTTTSTTCTTCSEEECTTCCCC--EECT--TTTTTCTTCCEEECTTCCCSEE----CTTT
T ss_pred CcCcEEEccCCccCc----CChhHhccCccceEEECCCCccc--eeCh--hhccCccccCeeeCCCCccccc----Chhh
Confidence 368999999998886 23667888999999999999875 3444 5688899999999999988863 3556
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCC--CCcc
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE--CSDE 167 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~--~~~~ 167 (472)
++.+++|++|++++|.++..+ +..+..+++|++|++++|.+.......+.. +++|+.|.+....-. ....
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSID----FIPLHNQKTLESLYLGSNHISSIKLPKGFP----TEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGG----GSCCTTCTTCCEEECCSSCCCCCCCCTTCC----CTTCCEEECCSSCCCEECHHH
T ss_pred hcccccccEeeccccCcccCC----cchhccCCcccEEECCCCcccccCcccccC----CcccCEEEcccCcccccChhh
Confidence 778899999999999988621 344678889999999999886532221211 445555444322111 0001
Q ss_pred ccchhhhcccCCccccCCCccCCCCCCCcccccccc--------------------------------------------
Q psy3611 168 EQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQS-------------------------------------------- 203 (472)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 203 (472)
+...+..... ..++....+....+..+..
T Consensus 173 ~~~l~~L~~l-------~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~ 245 (606)
T 3t6q_A 173 MSSLQQATNL-------SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245 (606)
T ss_dssp HHTTTTCCSE-------EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred hhhhccccee-------EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccCh
Confidence 1110000000 0000011100000000000
Q ss_pred -----------cCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHH
Q psy3611 204 -----------HNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGC 272 (472)
Q Consensus 204 -----------~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~ 272 (472)
..-..............+..+++|++|++++|.++... ..+ ..+++|++|++++|.++....
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~l------~~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGL------VGLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC-SSC------CSCTTCCEEECTTCCCSBGGG
T ss_pred hHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCC-hhh------cccccCCEEECccCCcCcCch
Confidence 00000000111122223445566777777766664221 111 234567777777776653321
Q ss_pred HHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHH-HHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCc
Q psy3611 273 KLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLA-AVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 351 (472)
Q Consensus 273 ~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L 351 (472)
. .++.+++|+.|++++|.+... ++ ..+..+++|++|++++|.+.... ..+..+..+++|
T Consensus 319 ~--------------~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L 378 (606)
T 3t6q_A 319 I--------------SASNFPSLTHLSIKGNTKRLE----LGTGCLENLENLRELDLSHDDIETSD--CCNLQLRNLSHL 378 (606)
T ss_dssp G--------------CGGGCTTCSEEECCSCSSCCB----CCSSTTTTCTTCCEEECCSSCCCEEE--ESTTTTTTCTTC
T ss_pred h--------------hhhccCcCCEEECCCCCcccc----cchhhhhccCcCCEEECCCCcccccc--CcchhcccCCCC
Confidence 1 123356677777777765532 21 23556777777777777776321 113345667788
Q ss_pred cEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhc
Q psy3611 352 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 431 (472)
Q Consensus 352 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 431 (472)
++|++++|.+.... +..+..+++|+.|++++|.+.... .+..+..+++|+.|++++|.+... .+..+..
T Consensus 379 ~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~ 447 (606)
T 3t6q_A 379 QSLNLSYNEPLSLK----TEAFKECPQLELLDLAFTRLKVKD---AQSPFQNLHLLKVLNLSHSLLDIS----SEQLFDG 447 (606)
T ss_dssp CEEECCSCSCEEEC----TTTTTTCTTCSEEECTTCCEECCT---TCCTTTTCTTCCEEECTTCCCBTT----CTTTTTT
T ss_pred CEEECCCCcCCcCC----HHHhcCCccCCeEECCCCcCCCcc---cchhhhCcccCCEEECCCCccCCc----CHHHHhC
Confidence 88888888776321 245667788888888888776431 122356678888888888887664 3556777
Q ss_pred CCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 432 KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 432 ~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+++|++|++++|++++.... ....+..+++|+.|+++++
T Consensus 448 l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECTTS
T ss_pred CCCCCEEECCCCCCCccccc-cchhhccCCCccEEECCCC
Confidence 88899999988887642211 1134566888999998876
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=4.7e-28 Score=257.80 Aligned_cols=353 Identities=15% Similarity=0.192 Sum_probs=209.3
Q ss_pred hHHHhhhcCCccEEeccCCCcchhhH-------------HHHHHhhh--cCCCCCeeeCCCCccCccchHHHHHHhccCC
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHVGI-------------TALSDAFE--ENKKLRHLNLNDNTITYKGAIPLGQALSKLP 66 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~~~-------------~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~ 66 (472)
+|..|.++++|++|+|++|.++..++ ..+|..+. .+++|++|++++|.+. +.+| ..+..++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~--~~iP--~~l~~L~ 515 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM--TQLP--DFLYDLP 515 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC--CSCC--GGGGGCS
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC--ccCh--HHHhCCC
Confidence 56778999999999999999886210 13677766 8999999999999875 6667 7789999
Q ss_pred CCcEEeccCcc-ccchhHHHHHHHhh-------cCCcccEEECcCCccCcchHHHHHH--HhhhCCCccEEEecCCcCCh
Q psy3611 67 SLAILNLGDCL-LKSAGASSIAKYLT-------DNTTLEDVNLTCNEISVQGGLDLVK--AMKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 67 ~L~~L~ls~~~-l~~~~~~~l~~~l~-------~~~~L~~L~l~~~~i~~~~~~~l~~--~l~~~~~L~~L~l~~~~i~~ 136 (472)
+|++|++++|. +++. .+|..++ .+++|++|++++|.++. ++. .+..+++|+.|++++|.+.
T Consensus 516 ~L~~L~Ls~N~~lsg~---~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-----ip~~~~l~~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 516 ELQSLNIACNRGISAA---QLKADWTRLADDEDTGPKIQIFYMGYNNLEE-----FPASASLQKMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp SCCEEECTTCTTSCHH---HHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-----CCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred CCCEEECcCCCCcccc---cchHHHHhhhhcccccCCccEEEeeCCcCCc-----cCChhhhhcCCCCCEEECCCCCcc-
Confidence 99999999998 8761 1344344 34599999999999984 565 7888999999999999887
Q ss_pred hhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchh
Q psy3611 137 EGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQ 216 (472)
Q Consensus 137 ~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (472)
..+ .+..++.|+.|.+....-. .+|.
T Consensus 587 ~lp-----~~~~L~~L~~L~Ls~N~l~---~lp~---------------------------------------------- 612 (876)
T 4ecn_A 587 HLE-----AFGTNVKLTDLKLDYNQIE---EIPE---------------------------------------------- 612 (876)
T ss_dssp BCC-----CCCTTSEESEEECCSSCCS---CCCT----------------------------------------------
T ss_pred cch-----hhcCCCcceEEECcCCccc---cchH----------------------------------------------
Confidence 333 2233555555544332111 1211
Q ss_pred hhhhhhcCCc-ccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCC--CCCc
Q psy3611 217 SHMSLKTGAR-LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKE--GSPL 293 (472)
Q Consensus 217 ~~~~~~~~~~-L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~--~~~~ 293 (472)
.+..+++ |++|++++|.++... . .+.....++|+.|++++|.++.... ..+..+ ..++
T Consensus 613 ---~l~~l~~~L~~L~Ls~N~L~~lp-~----~~~~~~~~~L~~L~Ls~N~l~g~ip-----------~l~~~l~~~~~~ 673 (876)
T 4ecn_A 613 ---DFCAFTDQVEGLGFSHNKLKYIP-N----IFNAKSVYVMGSVDFSYNKIGSEGR-----------NISCSMDDYKGI 673 (876)
T ss_dssp ---TSCEECTTCCEEECCSSCCCSCC-S----CCCTTCSSCEEEEECCSSCTTTTSS-----------SCSSCTTTCCCC
T ss_pred ---HHhhccccCCEEECcCCCCCcCc-h----hhhccccCCCCEEECcCCcCCCccc-----------cchhhhccccCC
Confidence 1223345 666666666664221 1 1111122336666666666642110 000000 1233
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHH-hcCCCccEEeCCCCCCChhHHHHHHHHHh--------cCCCccEEEccCCCCCcc
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVF-KKLKTLERVEMPQNGIYHVGITALSDAFE--------ENKNLRHLNLNDNTITYK 364 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~-~~~~~L~~L~l~~~~i~~~~~~~l~~~l~--------~~~~L~~L~l~~n~l~~~ 364 (472)
+|+.|++++|.+.. ++..+ ..+++|+.|++++|++.. ++..+. ++++|+.|++++|.++.
T Consensus 674 ~L~~L~Ls~N~L~~-----lp~~~~~~l~~L~~L~Ls~N~L~~-----ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~- 742 (876)
T 4ecn_A 674 NASTVTLSYNEIQK-----FPTELFATGSPISTIILSNNLMTS-----IPENSLKPKDGNYKNTYLLTTIDLRFNKLTS- 742 (876)
T ss_dssp CEEEEECCSSCCCS-----CCHHHHHTTCCCSEEECCSCCCSC-----CCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-
T ss_pred CcCEEEccCCcCCc-----cCHHHHccCCCCCEEECCCCcCCc-----cChHHhccccccccccCCccEEECCCCCCcc-
Confidence 56666666666663 33332 356666666666666652 122111 12266666666666652
Q ss_pred cHHHHHHHhc--CCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcC------CCCCchhHHHHHHHHhcCCccc
Q psy3611 365 GAIPLGQALS--KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC------NEISVQGGLDLVKAMKNKTKLK 436 (472)
Q Consensus 365 ~~~~l~~~l~--~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~------n~i~~~~~~~l~~~l~~~~~L~ 436 (472)
++..+. .+++|+.|++++|.+.+ ++..+..+++|+.|+|++ |.+... ++..+..+++|+
T Consensus 743 ----lp~~l~~~~l~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~----ip~~l~~L~~L~ 809 (876)
T 4ecn_A 743 ----LSDDFRATTLPYLSNMDVSYNCFSS-----FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ----WPTGITTCPSLI 809 (876)
T ss_dssp ----CCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCTTCCEEECCCCBCTTCCBCCCC----CCTTGGGCSSCC
T ss_pred ----chHHhhhccCCCcCEEEeCCCCCCc-----cchhhhcCCCCCEEECCCCCCccccccccc----ChHHHhcCCCCC
Confidence 223443 56666666666666664 455555666666666654 444332 455666666666
Q ss_pred EEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 437 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 437 ~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+|++++|+++.. ... + .++|+.|++++|
T Consensus 810 ~L~Ls~N~L~~I-p~~----l--~~~L~~LdLs~N 837 (876)
T 4ecn_A 810 QLQIGSNDIRKV-DEK----L--TPQLYILDIADN 837 (876)
T ss_dssp EEECCSSCCCBC-CSC----C--CSSSCEEECCSC
T ss_pred EEECCCCCCCcc-CHh----h--cCCCCEEECCCC
Confidence 666666666321 111 1 145666666665
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.7e-28 Score=256.25 Aligned_cols=204 Identities=17% Similarity=0.171 Sum_probs=150.4
Q ss_pred hhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCc-ceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCC--CcceeE
Q psy3611 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFA-LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS--PLALKV 297 (472)
Q Consensus 221 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~-L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~--~~~L~~ 297 (472)
+..+++|++|++++|.++... ..+ ..+++ |++|++++|.++. .+..++. +++|+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~~lp-~~l------~~l~~~L~~L~Ls~N~l~~---------------lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQITEIP-ANF------CGFTEQVENLSFAHNKLKY---------------IPNIFDAKSVSVMSA 406 (636)
T ss_dssp CEEEEEESEEECCSSEEEECC-TTS------EEECTTCCEEECCSSCCSS---------------CCSCCCTTCSSCEEE
T ss_pred hCCCCCCCEEECCCCcccccc-Hhh------hhhcccCcEEEccCCcCcc---------------cchhhhhcccCccCE
Confidence 445689999999999886221 122 23467 9999999999862 1222233 348999
Q ss_pred EEcCCCCCChhhHHHHHHHHh-------cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHH
Q psy3611 298 FIAGRNRLENEGAKMLAAVFK-------KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 370 (472)
Q Consensus 298 L~l~~~~l~~~~~~~l~~~~~-------~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 370 (472)
|++++|.+.+. .+..+. .+.+|+.|++++|+++... ...+..+++|++|++++|.++....
T Consensus 407 L~Ls~N~l~~~----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp----~~~~~~l~~L~~L~Ls~N~l~~i~~---- 474 (636)
T 4eco_A 407 IDFSYNEIGSV----DGKNFDPLDPTPFKGINVSSINLSNNQISKFP----KELFSTGSPLSSINLMGNMLTEIPK---- 474 (636)
T ss_dssp EECCSSCTTTT----TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC----THHHHTTCCCSEEECCSSCCSBCCS----
T ss_pred EECcCCcCCCc----chhhhcccccccccCCCCCEEECcCCccCcCC----HHHHccCCCCCEEECCCCCCCCcCH----
Confidence 99999999864 444455 6679999999999998322 3345568999999999999873211
Q ss_pred HHhcC-------CCCCcEEEcCCCCCChHHHHHHHHHhh--cCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEcc
Q psy3611 371 QALSK-------LPSLAILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVS 441 (472)
Q Consensus 371 ~~l~~-------~~~L~~L~l~~~~i~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 441 (472)
..+.. +++|+.|++++|.++. ++..+. .+++|+.|++++|.++. ++..+..+++|++|+++
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCCB-----CCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCSSCCEEECC
T ss_pred HHhccccccccccCCccEEECcCCcCCc-----cChhhhhccCCCcCEEECCCCCCCC-----cChhhhcCCCCCEEECC
Confidence 12222 2389999999999985 777776 88999999999999986 67888899999999995
Q ss_pred C------CCCChhHHHHHHHHHHhCCceeEEecCCCC
Q psy3611 442 E------NQFGEEGVEEMEKLMKSFGMAAALVLEDDE 472 (472)
Q Consensus 442 ~------n~i~~~~~~~l~~~l~~~~~L~~L~l~~~~ 472 (472)
+ |++... +...+..+++|+.|+++++.
T Consensus 545 ~N~~ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 545 NQRDAQGNRTLRE----WPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp SCBCTTCCBCCCC----CCTTGGGCSSCCEEECCSSC
T ss_pred CCcccccCccccc----ChHHHhcCCCCCEEECCCCc
Confidence 4 554433 33456679999999999873
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.2e-27 Score=241.40 Aligned_cols=401 Identities=17% Similarity=0.151 Sum_probs=248.6
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++|++|++++|.+.. ..+..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.++. ++..
T Consensus 21 ~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~--~~~~--~~~~~l~~L~~L~Ls~N~l~~-----lp~~ 87 (520)
T 2z7x_B 21 QKTTILNISQNYISE----LWTSDILSLSKLRILIISHNRIQ--YLDI--SVFKFNQELEYLDLSHNKLVK-----ISCH 87 (520)
T ss_dssp TTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCC--EEEG--GGGTTCTTCCEEECCSSCCCE-----EECC
T ss_pred ccccEEECCCCcccc----cChhhccccccccEEecCCCccC--CcCh--HHhhcccCCCEEecCCCceee-----cCcc
Confidence 689999999998886 33567888999999999999885 3444 678889999999999999885 3333
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhh--HHhhhccCC----CC
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA--AALVLEDDE----GE 163 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l--~~L~~~~~~----~~ 163 (472)
.+++|++|++++|.++.. .++..+..+++|++|++++|.+.... +..++.+ +.|.+.... +.
T Consensus 88 --~l~~L~~L~L~~N~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDAL---PICKEFGNMSQLKFLGLSTTHLEKSS-------VLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp --CCCCCSEEECCSSCCSSC---CCCGGGGGCTTCCEEEEEESSCCGGG-------GGGGTTSCEEEEEEEECTTTTSSC
T ss_pred --ccCCccEEeccCCccccc---cchhhhccCCcceEEEecCcccchhh-------ccccccceeeEEEeeccccccccc
Confidence 688999999999998752 24567788999999999999887632 2234444 444443321 11
Q ss_pred CCccccchhhhcccCCccccCCCccCCCCCCCccc----------ccccccCCC--CcccccchhhhhhhhcCCcccEEe
Q psy3611 164 CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHN----------ASNQSHNNS--NQSHNTSNQSHMSLKTGARLVELD 231 (472)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~~L~ 231 (472)
.+..+......... ..+....+..... .......+. ........... .+..+++|++|+
T Consensus 156 ~~~~l~~l~~~~l~--------l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~ 226 (520)
T 2z7x_B 156 DPEGLQDFNTESLH--------IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLT 226 (520)
T ss_dssp CTTTTTTCCEEEEE--------EECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEE
T ss_pred ccccccccccceEE--------EEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcc
Confidence 11111110000000 0000000000000 000000000 00000111112 455677888888
Q ss_pred CCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHH----HHHHhhcc---------cC------------
Q psy3611 232 LSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLS----KALHDCYE---------SS------------ 286 (472)
Q Consensus 232 l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~----~~l~~~~~---------~~------------ 286 (472)
++++.++......+..... +++|++|++++|.+++.....+. ..+..... .+
T Consensus 227 l~~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~ 303 (520)
T 2z7x_B 227 LNNIETTWNSFIRILQLVW---HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303 (520)
T ss_dssp EEEEEEEHHHHHHHHHHHH---TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCC
T ss_pred ccccccCHHHHHHHHHHhh---hCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCc
Confidence 8887776655555544432 34788888888876421100000 00000000 00
Q ss_pred ------------c-C-CCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCcc
Q psy3611 287 ------------K-K-EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLR 352 (472)
Q Consensus 287 ------------~-~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~ 352 (472)
. . ...+++|+.|++++|.+.+. .+..+..+++|+.|++++|+++. +..++..+..+++|+
T Consensus 304 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~l~~L~ 377 (520)
T 2z7x_B 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT----VFENCGHLTELETLILQMNQLKE--LSKIAEMTTQMKSLQ 377 (520)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT----TTTTCCCCSSCCEEECCSSCCCB--HHHHHHHHTTCTTCC
T ss_pred eeEEEcCCCccccccchhhCCcccEEEeECCccChh----hhhhhccCCCCCEEEccCCccCc--cccchHHHhhCCCCC
Confidence 0 0 14667788888888888763 45566778888888888888873 335667788888888
Q ss_pred EEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcC
Q psy3611 353 HLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK 432 (472)
Q Consensus 353 ~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 432 (472)
+|++++|.+... ... ..+..+++|++|++++|.+++. ++..+. ++|+.|++++|.++. ++..+..+
T Consensus 378 ~L~Ls~N~l~~~-l~~--~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~--~~L~~L~Ls~N~l~~-----ip~~~~~l 443 (520)
T 2z7x_B 378 QLDISQNSVSYD-EKK--GDCSWTKSLLSLNMSSNILTDT----IFRCLP--PRIKVLDLHSNKIKS-----IPKQVVKL 443 (520)
T ss_dssp EEECCSSCCBCC-GGG--CSCCCCTTCCEEECCSSCCCGG----GGGSCC--TTCCEEECCSSCCCC-----CCGGGGGC
T ss_pred EEECCCCcCCcc-ccc--chhccCccCCEEECcCCCCCcc----hhhhhc--ccCCEEECCCCcccc-----cchhhhcC
Confidence 888888887731 111 2355678888888888888754 333322 789999999998885 67777788
Q ss_pred CcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 433 TKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 433 ~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
++|++|++++|+++..... .+..+++|+.|+++++
T Consensus 444 ~~L~~L~L~~N~l~~l~~~----~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 444 EALQELNVASNQLKSVPDG----IFDRLTSLQKIWLHTN 478 (520)
T ss_dssp TTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCcCCccCHH----HhccCCcccEEECcCC
Confidence 9999999999988742211 4667899999999886
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.7e-25 Score=215.09 Aligned_cols=286 Identities=22% Similarity=0.247 Sum_probs=229.0
Q ss_pred HhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHH
Q psy3611 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 84 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~ 84 (472)
.+..+++|++|++++|.++.. +. +..+++|++|++++|.+... ..+..+++|++|++++|.+.+..
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~-----~~-~~~l~~L~~L~L~~n~i~~~------~~~~~l~~L~~L~l~~n~i~~~~-- 126 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDI-----SP-LSNLVKLTNLYIGTNKITDI------SALQNLTNLRELYLNEDNISDIS-- 126 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCSEEECTTSCCCCCG--
T ss_pred hhhhcCCccEEEccCCccccc-----hh-hhcCCcCCEEEccCCcccCc------hHHcCCCcCCEEECcCCcccCch--
Confidence 478899999999999998862 22 88899999999999988642 35789999999999999998642
Q ss_pred HHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCC
Q psy3611 85 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 164 (472)
Q Consensus 85 ~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~ 164 (472)
. +..+++|++|++++|..... +..+..+++|++|++++|.+....+
T Consensus 127 ---~-~~~l~~L~~L~l~~n~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~------------------------- 172 (347)
T 4fmz_A 127 ---P-LANLTKMYSLNLGANHNLSD-----LSPLSNMTGLNYLTVTESKVKDVTP------------------------- 172 (347)
T ss_dssp ---G-GTTCTTCCEEECTTCTTCCC-----CGGGTTCTTCCEEECCSSCCCCCGG-------------------------
T ss_pred ---h-hccCCceeEEECCCCCCccc-----ccchhhCCCCcEEEecCCCcCCchh-------------------------
Confidence 2 67789999999999955432 2337889999999999998764211
Q ss_pred CccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHH
Q psy3611 165 SDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244 (472)
Q Consensus 165 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 244 (472)
+..+++|++|++++|.+.....
T Consensus 173 --------------------------------------------------------~~~l~~L~~L~l~~n~l~~~~~-- 194 (347)
T 4fmz_A 173 --------------------------------------------------------IANLTDLYSLSLNYNQIEDISP-- 194 (347)
T ss_dssp --------------------------------------------------------GGGCTTCSEEECTTSCCCCCGG--
T ss_pred --------------------------------------------------------hccCCCCCEEEccCCccccccc--
Confidence 2235899999999999865432
Q ss_pred HHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCcc
Q psy3611 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLE 324 (472)
Q Consensus 245 l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~ 324 (472)
+ ..+++|+.|++++|.+++... ++.+++|+.|++++|.+... +. +..+++|+
T Consensus 195 ~------~~l~~L~~L~l~~n~l~~~~~----------------~~~~~~L~~L~l~~n~l~~~-----~~-~~~l~~L~ 246 (347)
T 4fmz_A 195 L------ASLTSLHYFTAYVNQITDITP----------------VANMTRLNSLKIGNNKITDL-----SP-LANLSQLT 246 (347)
T ss_dssp G------GGCTTCCEEECCSSCCCCCGG----------------GGGCTTCCEEECCSSCCCCC-----GG-GTTCTTCC
T ss_pred c------cCCCccceeecccCCCCCCch----------------hhcCCcCCEEEccCCccCCC-----cc-hhcCCCCC
Confidence 1 345799999999999875432 23367899999999999863 22 67899999
Q ss_pred EEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcC
Q psy3611 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404 (472)
Q Consensus 325 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~ 404 (472)
+|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+. .+..+..+
T Consensus 247 ~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l 310 (347)
T 4fmz_A 247 WLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLGNE----DMEVIGGL 310 (347)
T ss_dssp EEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCGG----GHHHHHTC
T ss_pred EEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECcCCcCCCc----ChhHhhcc
Confidence 999999999853 3577899999999999999852 3577899999999999999876 45667788
Q ss_pred CCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 405 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 405 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
++|+.|++++|.++.. +. +..+++|++|++++|+|+
T Consensus 311 ~~L~~L~L~~n~l~~~-----~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDI-----RP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSSCCCC-----GG-GGGCTTCSEESSSCC---
T ss_pred ccCCEEEccCCccccc-----cC-hhhhhccceeehhhhccc
Confidence 9999999999999874 33 888999999999999875
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=4.4e-27 Score=231.38 Aligned_cols=316 Identities=18% Similarity=0.246 Sum_probs=217.8
Q ss_pred hcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHH
Q psy3611 8 KLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87 (472)
Q Consensus 8 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~ 87 (472)
.++++++|+++++.++.-. +..+..+++|++|++++|.+.. ..+ ..+..+++|++|++++|.+++. .+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~----~~~~~~l~~L~~L~L~~n~i~~--~~~--~~~~~l~~L~~L~L~~n~l~~~----~~ 110 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLP----AALLDSFRQVELLNLNDLQIEE--IDT--YAFAYAHTIQKLYMGFNAIRYL----PP 110 (390)
T ss_dssp GGCCCSEEEEESCEESEEC----THHHHHCCCCSEEECTTSCCCE--ECT--TTTTTCTTCCEEECCSSCCCCC----CT
T ss_pred ccCCceEEEecCCchhhCC----hhHhcccccCcEEECCCCcccc--cCh--hhccCCCCcCEEECCCCCCCcC----CH
Confidence 3578888888888777522 3346778889999998888753 222 4577888899999998888763 34
Q ss_pred HHhhcCCcccEEECcCCccCcchHHHHHHH-hhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCc
Q psy3611 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKA-MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSD 166 (472)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~-l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~ 166 (472)
..++.+++|++|++++|.++. ++.. +..+++|++|++++|.+....+..+ ..+++|+.|.+....-.
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~--- 178 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSS-----LPRGIFHNTPKLTTLSMSNNNLERIEDDTF----QATTSLQNLQLSSNRLT--- 178 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCBCCTTTT----SSCTTCCEEECCSSCCS---
T ss_pred HHhcCCCCCCEEECCCCccCc-----CCHHHhcCCCCCcEEECCCCccCccChhhc----cCCCCCCEEECCCCcCC---
Confidence 456678889999999888874 3333 4678889999998887764322211 12333333322211000
Q ss_pred cccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHH
Q psy3611 167 EEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLA 246 (472)
Q Consensus 167 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 246 (472)
. ..+..++.|++|++++|.++...
T Consensus 179 ~---------------------------------------------------~~~~~l~~L~~L~l~~n~l~~~~----- 202 (390)
T 3o6n_A 179 H---------------------------------------------------VDLSLIPSLFHANVSYNLLSTLA----- 202 (390)
T ss_dssp B---------------------------------------------------CCGGGCTTCSEEECCSSCCSEEE-----
T ss_pred c---------------------------------------------------cccccccccceeecccccccccC-----
Confidence 0 00233477888888888775432
Q ss_pred HHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEE
Q psy3611 247 DLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 326 (472)
Q Consensus 247 ~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L 326 (472)
..++|++|++++|.++.... ..+++|+.|++++|.+.+. ..+..+++|++|
T Consensus 203 ------~~~~L~~L~l~~n~l~~~~~-----------------~~~~~L~~L~l~~n~l~~~------~~l~~l~~L~~L 253 (390)
T 3o6n_A 203 ------IPIAVEELDASHNSINVVRG-----------------PVNVELTILKLQHNNLTDT------AWLLNYPGLVEV 253 (390)
T ss_dssp ------CCSSCSEEECCSSCCCEEEC-----------------CCCSSCCEEECCSSCCCCC------GGGGGCTTCSEE
T ss_pred ------CCCcceEEECCCCeeeeccc-----------------cccccccEEECCCCCCccc------HHHcCCCCccEE
Confidence 12478888888888764311 1236789999999988863 356788899999
Q ss_pred eCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCC
Q psy3611 327 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 406 (472)
Q Consensus 327 ~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~ 406 (472)
++++|.+.... +..+..+++|++|++++|.++.. +.....+++|+.|++++|.+.. ++..+..+++
T Consensus 254 ~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~l~~ 319 (390)
T 3o6n_A 254 DLSYNELEKIM----YHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDR 319 (390)
T ss_dssp ECCSSCCCEEE----SGGGTTCSSCCEEECCSSCCCEE-----ECSSSCCTTCCEEECCSSCCCC-----CGGGHHHHTT
T ss_pred ECCCCcCCCcC----hhHccccccCCEEECCCCcCccc-----CcccCCCCCCCEEECCCCccee-----cCccccccCc
Confidence 99999887432 45677888999999999988742 1334567889999999998875 4555566788
Q ss_pred CCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHH
Q psy3611 407 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEM 453 (472)
Q Consensus 407 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 453 (472)
|+.|++++|.+... + +..+++|++|++++|++.......+
T Consensus 320 L~~L~L~~N~i~~~-----~--~~~~~~L~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 320 LENLYLDHNSIVTL-----K--LSTHHTLKNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp CSEEECCSSCCCCC-----C--CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred CCEEECCCCcccee-----C--chhhccCCEEEcCCCCccchhHHHH
Confidence 99999999988773 2 6677899999999998877654433
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=4.1e-27 Score=250.58 Aligned_cols=335 Identities=16% Similarity=0.186 Sum_probs=217.5
Q ss_pred HHhccCCCCcEEeccCccccchh-------------HHHHHHHhh--cCCcccEEECcCCccCcchHHHHHHHhhhCCCc
Q psy3611 60 QALSKLPSLAILNLGDCLLKSAG-------------ASSIAKYLT--DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 124 (472)
Q Consensus 60 ~~l~~~~~L~~L~ls~~~l~~~~-------------~~~l~~~l~--~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L 124 (472)
..+..+++|++|+|++|.+++.. ...+|..++ ++++|++|+|++|.+.. .+|..+..+++|
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~L 517 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPEL 517 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSSC
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCCC
Confidence 55777888888888888887610 012566665 78888888888887765 366777788888
Q ss_pred cEEEecCCc-CCh-hhHHHHHHHH---HhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccc
Q psy3611 125 KQINVSENQ-FGE-EGVEEMEKLM---KSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNA 199 (472)
Q Consensus 125 ~~L~l~~~~-i~~-~~~~~l~~~l---~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (472)
+.|++++|. +++ ..|..+...- ..++.|+.|.+....-. .+|.. .....+.+++.++++.
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---~ip~~--------~~l~~L~~L~~L~Ls~---- 582 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---EFPAS--------ASLQKMVKLGLLDCVH---- 582 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---BCCCH--------HHHTTCTTCCEEECTT----
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC---ccCCh--------hhhhcCCCCCEEECCC----
Confidence 888888887 776 6666665532 23345555544432211 22210 0011122222222211
Q ss_pred cccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCc-ceEEEeeCCCCChhHHHHHHHH
Q psy3611 200 SNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFA-LEELKLNNNGLGITGCKLLSKA 278 (472)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~-L~~L~l~~~~i~~~~~~~l~~~ 278 (472)
+.+. .++ .+..+++|++|++++|.++.. ...+ ..+++ |++|++++|.++..
T Consensus 583 ------N~l~------~lp-~~~~L~~L~~L~Ls~N~l~~l-p~~l------~~l~~~L~~L~Ls~N~L~~l-------- 634 (876)
T 4ecn_A 583 ------NKVR------HLE-AFGTNVKLTDLKLDYNQIEEI-PEDF------CAFTDQVEGLGFSHNKLKYI-------- 634 (876)
T ss_dssp ------SCCC------BCC-CCCTTSEESEEECCSSCCSCC-CTTS------CEECTTCCEEECCSSCCCSC--------
T ss_pred ------CCcc------cch-hhcCCCcceEEECcCCccccc-hHHH------hhccccCCEEECcCCCCCcC--------
Confidence 1110 111 345668999999999998622 2222 23457 99999999998621
Q ss_pred HHhhcccCcCCCCC--cceeEEEcCCCCCChhhHHHHHHHHh--cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEE
Q psy3611 279 LHDCYESSKKEGSP--LALKVFIAGRNRLENEGAKMLAAVFK--KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHL 354 (472)
Q Consensus 279 l~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~l~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L 354 (472)
+..++.+ ++|+.|++++|.+.+.. ..++..+. .+.+|+.|++++|.++... ...+..+++|+.|
T Consensus 635 -------p~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp----~~~~~~l~~L~~L 702 (876)
T 4ecn_A 635 -------PNIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMDDYKGINASTVTLSYNEIQKFP----TELFATGSPISTI 702 (876)
T ss_dssp -------CSCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCCSCC----HHHHHTTCCCSEE
T ss_pred -------chhhhccccCCCCEEECcCCcCCCcc-ccchhhhccccCCCcCEEEccCCcCCccC----HHHHccCCCCCEE
Confidence 1122223 34999999999987520 00111122 3458999999999998322 2344578999999
Q ss_pred EccCCCCCcccHHHHHHHhc--------CCCCCcEEEcCCCCCChHHHHHHHHHhh--cCCCCCEEECcCCCCCchhHHH
Q psy3611 355 NLNDNTITYKGAIPLGQALS--------KLPSLAILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLD 424 (472)
Q Consensus 355 ~l~~n~l~~~~~~~l~~~l~--------~~~~L~~L~l~~~~i~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~ 424 (472)
++++|.+.. ++..+. .+++|+.|++++|.++. ++..+. .+++|+.|+|++|.+..
T Consensus 703 ~Ls~N~L~~-----ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~----- 767 (876)
T 4ecn_A 703 ILSNNLMTS-----IPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSS----- 767 (876)
T ss_dssp ECCSCCCSC-----CCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSS-----
T ss_pred ECCCCcCCc-----cChHHhccccccccccCCccEEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCc-----
Confidence 999999873 112221 22389999999999984 677776 88999999999999986
Q ss_pred HHHHHhcCCcccEEEccC------CCCChhHHHHHHHHHHhCCceeEEecCCCC
Q psy3611 425 LVKAMKNKTKLKQINVSE------NQFGEEGVEEMEKLMKSFGMAAALVLEDDE 472 (472)
Q Consensus 425 l~~~l~~~~~L~~L~l~~------n~i~~~~~~~l~~~l~~~~~L~~L~l~~~~ 472 (472)
++..+..+++|+.|++++ |.+... +...+..+++|+.|+++++.
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~----ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ----WPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCC----CCTTGGGCSSCCEEECCSSC
T ss_pred cchhhhcCCCCCEEECCCCCCccccccccc----ChHHHhcCCCCCEEECCCCC
Confidence 677888999999999977 544432 34456679999999999873
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=2.2e-25 Score=224.43 Aligned_cols=342 Identities=20% Similarity=0.249 Sum_probs=240.7
Q ss_pred hcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHH
Q psy3611 8 KLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87 (472)
Q Consensus 8 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~ 87 (472)
.++++++|++.++.+.. ++ .+..+++|++|++++|.+... + . +..+++|++|++++|.+.+..
T Consensus 44 ~l~~l~~L~l~~~~i~~-----l~-~~~~l~~L~~L~Ls~n~l~~~---~--~-~~~l~~L~~L~l~~n~l~~~~----- 106 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-----ID-GVEYLNNLTQINFSNNQLTDI---T--P-LKNLTKLVDILMNNNQIADIT----- 106 (466)
T ss_dssp HHHTCCEEECCSSCCCC-----CT-TGGGCTTCCEEECCSSCCCCC---G--G-GTTCTTCCEEECCSSCCCCCG-----
T ss_pred HhccccEEecCCCCCcc-----Cc-chhhhcCCCEEECCCCccCCc---h--h-hhccccCCEEECCCCccccCh-----
Confidence 46788999999888774 23 367789999999999987532 2 2 688899999999999888642
Q ss_pred HHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcc
Q psy3611 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDE 167 (472)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~ 167 (472)
. +..+++|++|++++|.+.+. + .+..+++|++|++++|.+.... .+..++.|+.|....... .
T Consensus 107 ~-~~~l~~L~~L~L~~n~l~~~-----~-~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~~~~----~ 169 (466)
T 1o6v_A 107 P-LANLTNLTGLTLFNNQITDI-----D-PLKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGNQVT----D 169 (466)
T ss_dssp G-GTTCTTCCEEECCSSCCCCC-----G-GGTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEESCC----C
T ss_pred h-hcCCCCCCEEECCCCCCCCC-----h-HHcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCCccc----C
Confidence 2 67789999999999988863 2 2678899999999998876532 134466665555432110 0
Q ss_pred ccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHH
Q psy3611 168 EQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLAD 247 (472)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 247 (472)
++ ......+++.+++..-. .. .. ..+..+++|++|++++|.+..... +
T Consensus 170 ~~-----------~~~~l~~L~~L~l~~n~----------l~-----~~--~~l~~l~~L~~L~l~~n~l~~~~~--~-- 217 (466)
T 1o6v_A 170 LK-----------PLANLTTLERLDISSNK----------VS-----DI--SVLAKLTNLESLIATNNQISDITP--L-- 217 (466)
T ss_dssp CG-----------GGTTCTTCCEEECCSSC----------CC-----CC--GGGGGCTTCSEEECCSSCCCCCGG--G--
T ss_pred ch-----------hhccCCCCCEEECcCCc----------CC-----CC--hhhccCCCCCEEEecCCccccccc--c--
Confidence 00 11222333333332110 00 00 124567889999999988855432 1
Q ss_pred HHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEe
Q psy3611 248 LLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE 327 (472)
Q Consensus 248 ~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~ 327 (472)
..+++|++|++++|.+++.+ .+..+++|+.|++++|.+... +. +..+++|+.|+
T Consensus 218 ----~~l~~L~~L~l~~n~l~~~~----------------~l~~l~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L~ 271 (466)
T 1o6v_A 218 ----GILTNLDELSLNGNQLKDIG----------------TLASLTNLTDLDLANNQISNL-----AP-LSGLTKLTELK 271 (466)
T ss_dssp ----GGCTTCCEEECCSSCCCCCG----------------GGGGCTTCSEEECCSSCCCCC-----GG-GTTCTTCSEEE
T ss_pred ----cccCCCCEEECCCCCcccch----------------hhhcCCCCCEEECCCCccccc-----hh-hhcCCCCCEEE
Confidence 23568999999999887531 123367899999999988763 22 66788999999
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCC
Q psy3611 328 MPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 407 (472)
Q Consensus 328 l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L 407 (472)
+++|.+.... . +..+++|++|++++|.+... ..+..+++|+.|++++|.+.+.. + +..+++|
T Consensus 272 l~~n~l~~~~-----~-~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~~----~--~~~l~~L 333 (466)
T 1o6v_A 272 LGANQISNIS-----P-LAGLTALTNLELNENQLEDI------SPISNLKNLTYLTLYFNNISDIS----P--VSSLTKL 333 (466)
T ss_dssp CCSSCCCCCG-----G-GTTCTTCSEEECCSSCCSCC------GGGGGCTTCSEEECCSSCCSCCG----G--GGGCTTC
T ss_pred CCCCccCccc-----c-ccCCCccCeEEcCCCcccCc------hhhcCCCCCCEEECcCCcCCCch----h--hccCccC
Confidence 9999887432 1 67788999999999988742 22667889999999999888642 1 5678999
Q ss_pred CEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 408 EDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 408 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+.|++++|.+... ..+..+++|++|++++|++++... +..+++|+.|+++++
T Consensus 334 ~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 334 QRLFFYNNKVSDV------SSLANLTNINWLSAGHNQISDLTP------LANLTRITQLGLNDQ 385 (466)
T ss_dssp CEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCBCGG------GTTCTTCCEEECCCE
T ss_pred CEeECCCCccCCc------hhhccCCCCCEEeCCCCccCccch------hhcCCCCCEEeccCC
Confidence 9999999988873 467788999999999999876542 566889999988764
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=4.5e-26 Score=234.45 Aligned_cols=370 Identities=17% Similarity=0.191 Sum_probs=179.7
Q ss_pred HhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHH
Q psy3611 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 84 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~ 84 (472)
.|.++++|++|++++|.++. ..+..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.+++..
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~--~~~~--~~~~~l~~L~~L~Ls~n~l~~~~-- 114 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLS--SLSS--SWFGPLSSLKYLNLMGNPYQTLG-- 114 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCC--SCCH--HHHTTCTTCCEEECTTCCCSSSC--
T ss_pred hhhcCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccC--ccCH--HHhccCCCCcEEECCCCcccccc--
Confidence 45566666666666666654 22345566666666666666654 2222 34566666666666666665321
Q ss_pred HHHHHhhcCCcccEEECcCCccCcchHHHHH-HHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCC
Q psy3611 85 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLV-KAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 163 (472)
Q Consensus 85 ~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~-~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~ 163 (472)
++..++.+++|++|++++|.+... ++ ..+..+++|++|++++|.+....+..+. .++.++.|.+....
T Consensus 115 -~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~----~l~~L~~L~l~~n~-- 183 (549)
T 2z81_A 115 -VTSLFPNLTNLQTLRIGNVETFSE----IRRIDFAGLTSLNELEIKALSLRNYQSQSLK----SIRDIHHLTLHLSE-- 183 (549)
T ss_dssp -SSCSCTTCTTCCEEEEEESSSCCE----ECTTTTTTCCEEEEEEEEETTCCEECTTTTT----TCSEEEEEEEECSB--
T ss_pred -hhhhhhccCCccEEECCCCccccc----cCHhhhhcccccCeeeccCCcccccChhhhh----ccccCceEecccCc--
Confidence 223345566666666666652211 11 2445566666666666665543322221 12233222222111
Q ss_pred CCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHH
Q psy3611 164 CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243 (472)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 243 (472)
...........+++|++|++++|.+......
T Consensus 184 -------------------------------------------------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 214 (549)
T 2z81_A 184 -------------------------------------------------SAFLLEIFADILSSVRYLELRDTNLARFQFS 214 (549)
T ss_dssp -------------------------------------------------STTHHHHHHHSTTTBSEEEEESCBCTTCCCC
T ss_pred -------------------------------------------------ccccchhhHhhcccccEEEccCCcccccccc
Confidence 0111222234568999999999888542100
Q ss_pred HHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccC--------------------cCCCC------------
Q psy3611 244 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS--------------------KKEGS------------ 291 (472)
Q Consensus 244 ~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~--------------------~~~~~------------ 291 (472)
... ....+++|+.|++++|.+++.....+.+.+....... ..+..
T Consensus 215 ~~~---~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 291 (549)
T 2z81_A 215 PLP---VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291 (549)
T ss_dssp CCS---SCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESC
T ss_pred ccc---hhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccc
Confidence 000 0012345666666666665555544443322110000 00000
Q ss_pred -----------------CcceeEEEcCCCCCChhhHHHHHHHH-hcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccE
Q psy3611 292 -----------------PLALKVFIAGRNRLENEGAKMLAAVF-KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRH 353 (472)
Q Consensus 292 -----------------~~~L~~L~l~~~~l~~~~~~~l~~~~-~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~ 353 (472)
+++|+.|++++|.+.. ++..+ ..+++|+.|++++|++...... -...+..+++|++
T Consensus 292 ~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-----ip~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~l~~L~~ 365 (549)
T 2z81_A 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-----VPCSFSQHLKSLEFLDLSENLMVEEYLK-NSACKGAWPSLQT 365 (549)
T ss_dssp BCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-----CCHHHHHHCTTCCEEECCSSCCCHHHHH-HHTCTTSSTTCCE
T ss_pred ccchhhhcccchhhhhhcccceEEEeccCcccc-----CCHHHHhcCccccEEEccCCcccccccc-chhhhhccccCcE
Confidence 1234455555554442 33332 3456666666666665532100 0112344556666
Q ss_pred EEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHH-----
Q psy3611 354 LNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA----- 428 (472)
Q Consensus 354 L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~----- 428 (472)
|++++|.++ +.......+..+++|++|++++|.++. ++..+..+++|+.|++++|.+.. ++..
T Consensus 366 L~Ls~N~l~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~~L~~L~Ls~N~l~~-----l~~~~~~~L 433 (549)
T 2z81_A 366 LVLSQNHLR--SMQKTGEILLTLKNLTSLDISRNTFHP-----MPDSCQWPEKMRFLNLSSTGIRV-----VKTCIPQTL 433 (549)
T ss_dssp EECTTSCCC--CHHHHHHHGGGCTTCCEEECTTCCCCC-----CCSCCCCCTTCCEEECTTSCCSC-----CCTTSCTTC
T ss_pred EEccCCccc--ccccchhhhhcCCCCCEEECCCCCCcc-----CChhhcccccccEEECCCCCccc-----ccchhcCCc
Confidence 666666555 222222345555666666666665553 34444444555555555554432 1111
Q ss_pred -------------HhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 429 -------------MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 429 -------------l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
...+++|++|++++|+++. +. . ....++|+.|+++++
T Consensus 434 ~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~--ip---~-~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 434 EVLDVSNNNLDSFSLFLPRLQELYISRNKLKT--LP---D-ASLFPVLLVMKISRN 483 (549)
T ss_dssp SEEECCSSCCSCCCCCCTTCCEEECCSSCCSS--CC---C-GGGCTTCCEEECCSS
T ss_pred eEEECCCCChhhhcccCChhcEEECCCCccCc--CC---C-cccCccCCEEecCCC
Confidence 1356677777777777652 11 1 134677777777765
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=2.8e-26 Score=225.61 Aligned_cols=294 Identities=19% Similarity=0.214 Sum_probs=223.5
Q ss_pred HHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
..|.++++|++|++++|.+... .+..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.++.
T Consensus 63 ~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~--~~~~--~~~~~l~~L~~L~L~~n~l~~--- 131 (390)
T 3o6n_A 63 ALLDSFRQVELLNLNDLQIEEI----DTYAFAYAHTIQKLYMGFNAIR--YLPP--HVFQNVPLLTVLVLERNDLSS--- 131 (390)
T ss_dssp HHHHHCCCCSEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCC--CCCT--TTTTTCTTCCEEECCSSCCCC---
T ss_pred hHhcccccCcEEECCCCccccc----ChhhccCCCCcCEEECCCCCCC--cCCH--HHhcCCCCCCEEECCCCccCc---
Confidence 4588999999999999998862 2457888999999999999985 3333 567889999999999999985
Q ss_pred HHHHH-HhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCC
Q psy3611 84 SSIAK-YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 162 (472)
Q Consensus 84 ~~l~~-~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~ 162 (472)
++. .+..+++|++|++++|.+... .+..+..+++|++|++++|.++... +..++.++.+......
T Consensus 132 --l~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~l~~L~~L~l~~n~- 197 (390)
T 3o6n_A 132 --LPRGIFHNTPKLTTLSMSNNNLERI----EDDTFQATTSLQNLQLSSNRLTHVD-------LSLIPSLFHANVSYNL- 197 (390)
T ss_dssp --CCTTTTTTCTTCCEEECCSSCCCBC----CTTTTSSCTTCCEEECCSSCCSBCC-------GGGCTTCSEEECCSSC-
T ss_pred --CCHHHhcCCCCCcEEECCCCccCcc----ChhhccCCCCCCEEECCCCcCCccc-------cccccccceeeccccc-
Confidence 333 346789999999999999863 3455778899999999999887642 2224444333322110
Q ss_pred CCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhH
Q psy3611 163 ECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGV 242 (472)
Q Consensus 163 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 242 (472)
... +.....|++|++++|.+.....
T Consensus 198 --l~~-----------------------------------------------------~~~~~~L~~L~l~~n~l~~~~~ 222 (390)
T 3o6n_A 198 --LST-----------------------------------------------------LAIPIAVEELDASHNSINVVRG 222 (390)
T ss_dssp --CSE-----------------------------------------------------EECCSSCSEEECCSSCCCEEEC
T ss_pred --ccc-----------------------------------------------------cCCCCcceEEECCCCeeeeccc
Confidence 000 1223689999999999965432
Q ss_pred HHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCC
Q psy3611 243 EGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKT 322 (472)
Q Consensus 243 ~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~ 322 (472)
...++|++|++++|.+++.. .++.+++|+.|++++|.+.+. .+..+..+++
T Consensus 223 ---------~~~~~L~~L~l~~n~l~~~~----------------~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~ 273 (390)
T 3o6n_A 223 ---------PVNVELTILKLQHNNLTDTA----------------WLLNYPGLVEVDLSYNELEKI----MYHPFVKMQR 273 (390)
T ss_dssp ---------CCCSSCCEEECCSSCCCCCG----------------GGGGCTTCSEEECCSSCCCEE----ESGGGTTCSS
T ss_pred ---------cccccccEEECCCCCCcccH----------------HHcCCCCccEEECCCCcCCCc----ChhHcccccc
Confidence 12368999999999997541 123468999999999999874 4567788999
Q ss_pred ccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhh
Q psy3611 323 LERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 402 (472)
Q Consensus 323 L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~ 402 (472)
|++|++++|+++.. +..+..+++|++|++++|.+.. ++..+..+++|+.|++++|.+++. + +.
T Consensus 274 L~~L~L~~n~l~~~-----~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~l~~L~~L~L~~N~i~~~-----~--~~ 336 (390)
T 3o6n_A 274 LERLYISNNRLVAL-----NLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVTL-----K--LS 336 (390)
T ss_dssp CCEEECCSSCCCEE-----ECSSSCCTTCCEEECCSSCCCC-----CGGGHHHHTTCSEEECCSSCCCCC-----C--CC
T ss_pred CCEEECCCCcCccc-----CcccCCCCCCCEEECCCCccee-----cCccccccCcCCEEECCCCcccee-----C--ch
Confidence 99999999999843 3344578999999999999873 223455678999999999999863 2 56
Q ss_pred cCCCCCEEECcCCCCCchhHH
Q psy3611 403 DNTTLEDVNLTCNEISVQGGL 423 (472)
Q Consensus 403 ~~~~L~~L~L~~n~i~~~~~~ 423 (472)
.+++|+.|++++|.+..++..
T Consensus 337 ~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp TTCCCSEEECCSSCEEHHHHH
T ss_pred hhccCCEEEcCCCCccchhHH
Confidence 789999999999999876543
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=7.3e-26 Score=233.43 Aligned_cols=401 Identities=17% Similarity=0.162 Sum_probs=233.6
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++|++|++++|.++. ..+..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.++. ++..
T Consensus 52 ~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~--~~~~--~~~~~l~~L~~L~Ls~N~l~~-----lp~~ 118 (562)
T 3a79_B 52 PRTKALSLSQNSISE----LRMPDISFLSELRVLRLSHNRIR--SLDF--HVFLFNQDLEYLDVSHNRLQN-----ISCC 118 (562)
T ss_dssp TTCCEEECCSSCCCC----CCGGGTTTCTTCCEEECCSCCCC--EECT--TTTTTCTTCCEEECTTSCCCE-----ECSC
T ss_pred CCcCEEECCCCCccc----cChhhhccCCCccEEECCCCCCC--cCCH--HHhCCCCCCCEEECCCCcCCc-----cCcc
Confidence 567778888777765 22456777778888888887775 3333 456777788888888887764 3332
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhh--HHhhhccC----CCC
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA--AALVLEDD----EGE 163 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l--~~L~~~~~----~~~ 163 (472)
.+++|++|++++|.+... .++..+..+++|++|++++|.+..... ..++.+ +.|.+... .+.
T Consensus 119 --~l~~L~~L~Ls~N~l~~l---~~p~~~~~l~~L~~L~L~~n~l~~~~~-------~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVL---PVCKEFGNLTKLTFLGLSAAKFRQLDL-------LPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp --CCTTCSEEECCSSCCSBC---CCCGGGGGCTTCCEEEEECSBCCTTTT-------GGGTTSCEEEEEEEESSCCCCSS
T ss_pred --ccccCCEEECCCCCcccc---CchHhhcccCcccEEecCCCccccCch-------hhhhhceeeEEEeeccccccccc
Confidence 567788888888877652 123566777788888888877765321 112222 33333221 111
Q ss_pred CCccccchhhhcccCCccccCCCccCCCCCCCccc----------ccccccCCCCcccccchhhhhhhhcCCcccEEeCC
Q psy3611 164 CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHN----------ASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLS 233 (472)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 233 (472)
....+........ .. .+....+..... .......+....... ......+...+.|+.|++.
T Consensus 187 ~~~~l~~l~~~~l-------~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l-~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 187 ETESLQIPNTTVL-------HL-VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL-MTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp SCCEEEECCEEEE-------EE-EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHH-HHHHHHHHSCSSCEEEEEE
T ss_pred CcccccccCcceE-------EE-EecCccchhhhhhhcccccceEEEecccccccccchH-HHHHHHHhccCcceEEEec
Confidence 1111111000000 00 000000000000 000000000000000 1111234556777777777
Q ss_pred CCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhH---H-------------------------HHHHHHHHh----
Q psy3611 234 DNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITG---C-------------------------KLLSKALHD---- 281 (472)
Q Consensus 234 ~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~---~-------------------------~~l~~~l~~---- 281 (472)
++.++......+...+. .++|++|++++|.+++.. . ..+...+..
T Consensus 258 ~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFW---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEECHHHHHHHHHHHT---TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred CCcCcHHHHHHHHHhhh---cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence 77776655555554432 247888988888765210 0 111111111
Q ss_pred -hcc-----cCcC-CCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEE
Q psy3611 282 -CYE-----SSKK-EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHL 354 (472)
Q Consensus 282 -~~~-----~~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L 354 (472)
... ..-. .+.+++|+.|++++|.+.+. .+..+..+++|+.|++++|+++.. ..++..+..+++|++|
T Consensus 335 ~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETL 408 (562)
T ss_dssp EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEE
T ss_pred EEEccCCCcccccCccCCCCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEE
Confidence 000 0000 15678899999999998863 556677889999999999998843 2556678889999999
Q ss_pred EccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCc
Q psy3611 355 NLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTK 434 (472)
Q Consensus 355 ~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 434 (472)
++++|.++.. ... ..+..+++|+.|++++|.+++. ++..+. ++|+.|++++|.++. ++..+..+++
T Consensus 409 ~l~~N~l~~~-~~~--~~~~~l~~L~~L~l~~n~l~~~----~~~~l~--~~L~~L~L~~N~l~~-----ip~~~~~l~~ 474 (562)
T 3a79_B 409 DVSLNSLNSH-AYD--RTCAWAESILVLNLSSNMLTGS----VFRCLP--PKVKVLDLHNNRIMS-----IPKDVTHLQA 474 (562)
T ss_dssp ECTTSCCBSC-CSS--CCCCCCTTCCEEECCSSCCCGG----GGSSCC--TTCSEEECCSSCCCC-----CCTTTTSSCC
T ss_pred ECCCCcCCCc-cCh--hhhcCcccCCEEECCCCCCCcc----hhhhhc--CcCCEEECCCCcCcc-----cChhhcCCCC
Confidence 9999988731 100 2355678888999988888753 333222 688888888888875 6666667888
Q ss_pred ccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 435 LKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 435 L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
|++|++++|+++..... .+..+++|+.|++++|
T Consensus 475 L~~L~L~~N~l~~l~~~----~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 475 LQELNVASNQLKSVPDG----VFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CSEEECCSSCCCCCCTT----STTTCTTCCCEECCSC
T ss_pred CCEEECCCCCCCCCCHH----HHhcCCCCCEEEecCC
Confidence 88888888887632111 3566888888888876
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.2e-26 Score=232.52 Aligned_cols=303 Identities=19% Similarity=0.184 Sum_probs=210.0
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
+++++|+|++|.++... +..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.++... +..
T Consensus 32 ~~l~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~--~~~~--~~~~~l~~L~~L~L~~n~l~~~~----~~~ 99 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLN----QDEFASFPHLEELELNENIVS--AVEP--GAFNNLFNLRTLGLRSNRLKLIP----LGV 99 (477)
T ss_dssp TTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECTTSCCC--EECT--TTTTTCTTCCEEECCSSCCCSCC----TTS
T ss_pred CCCcEEECCCCccceEC----HhHccCCCCCCEEECCCCccC--EeCh--hhhhCCccCCEEECCCCcCCccC----ccc
Confidence 35666777776666522 445666667777777766664 2223 44566667777777776666421 123
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcccc
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQ 169 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~ 169 (472)
+..+++|++|++++|.+... .+..+..+++|++|++++|.+....+
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------------ 145 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVIL----LDYMFQDLYNLKSLEVGDNDLVYISH------------------------------ 145 (477)
T ss_dssp STTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEEECCTTCCEECT------------------------------
T ss_pred ccCCCCCCEEECCCCccccC----ChhHccccccCCEEECCCCccceeCh------------------------------
Confidence 44566677777777666642 23445566667777776665543110
Q ss_pred chhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHH
Q psy3611 170 DEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLL 249 (472)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l 249 (472)
..+..+++|++|++++|.++......+.
T Consensus 146 -------------------------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~--- 173 (477)
T 2id5_A 146 -------------------------------------------------RAFSGLNSLEQLTLEKCNLTSIPTEALS--- 173 (477)
T ss_dssp -------------------------------------------------TSSTTCTTCCEEEEESCCCSSCCHHHHT---
T ss_pred -------------------------------------------------hhccCCCCCCEEECCCCcCcccChhHhc---
Confidence 1133458999999999999766554443
Q ss_pred hccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCC
Q psy3611 250 RSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP 329 (472)
Q Consensus 250 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~ 329 (472)
.+++|+.|++++|.++... ...+..+++|+.|++++|..... ++.......+|++|+++
T Consensus 174 ---~l~~L~~L~l~~n~i~~~~--------------~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 174 ---HLHGLIVLRLRHLNINAIR--------------DYSFKRLYRLKVLEISHWPYLDT----MTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp ---TCTTCCEEEEESCCCCEEC--------------TTCSCSCTTCCEEEEECCTTCCE----ECTTTTTTCCCSEEEEE
T ss_pred ---ccCCCcEEeCCCCcCcEeC--------------hhhcccCcccceeeCCCCccccc----cCcccccCccccEEECc
Confidence 4578999999999986432 12355678999999999876553 44444455699999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCE
Q psy3611 330 QNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 409 (472)
Q Consensus 330 ~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~ 409 (472)
+|+++... ...+..+++|++|++++|.++.... ..+..+++|+.|++++|.+.+. .+..+..+++|+.
T Consensus 233 ~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~ 300 (477)
T 2id5_A 233 HCNLTAVP----YLAVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQLVGGQLAVV----EPYAFRGLNYLRV 300 (477)
T ss_dssp SSCCCSCC----HHHHTTCTTCCEEECCSSCCCEECT----TSCTTCTTCCEEECCSSCCSEE----CTTTBTTCTTCCE
T ss_pred CCcccccC----HHHhcCccccCeeECCCCcCCccCh----hhccccccCCEEECCCCccceE----CHHHhcCcccCCE
Confidence 99988443 3567789999999999999884332 4567889999999999999874 3567788899999
Q ss_pred EECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 410 VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 410 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
|+|++|.++.. .+..+..+++|++|++++|++..
T Consensus 301 L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 301 LNVSGNQLTTL----EESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp EECCSSCCSCC----CGGGBSCGGGCCEEECCSSCEEC
T ss_pred EECCCCcCcee----CHhHcCCCcccCEEEccCCCccC
Confidence 99999998873 23456778899999999999754
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=4.5e-27 Score=243.01 Aligned_cols=120 Identities=23% Similarity=0.231 Sum_probs=72.4
Q ss_pred HhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHH
Q psy3611 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 84 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~ 84 (472)
+|.++++|++|++++|.+... .+..+..+++|++|++++|.+.. ..+ ..+..+++|++|++++|.++...
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i----~~~~~~~l~~L~~L~L~~n~l~~--~~~--~~~~~l~~L~~L~L~~n~l~~l~-- 116 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTI----EDGAYQSLSHLSTLILTGNPIQS--LAL--GAFSGLSSLQKLVAVETNLASLE-- 116 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCE--ECT--TTTTTCTTCCEEECTTSCCCCST--
T ss_pred HhhCCCCceEEECCCCcCCcc----CcccccCchhCCEEeCcCCcCCc--cCH--hhhcCccccccccccccccccCC--
Confidence 466667777777777766541 23456666777777777766542 222 34566677777777777665421
Q ss_pred HHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhH
Q psy3611 85 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV 139 (472)
Q Consensus 85 ~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~ 139 (472)
...++.+++|++|++++|.+... .++..+..+++|++|++++|.+....+
T Consensus 117 --~~~~~~l~~L~~L~L~~n~l~~~---~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 117 --NFPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp --TCSCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred --CccccccccccEEecCCCcccee---cChhhhcccCCCCEEeCcCCccceecH
Confidence 11245567777777777766542 134556667777777777776655433
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.7e-26 Score=237.03 Aligned_cols=312 Identities=18% Similarity=0.244 Sum_probs=206.4
Q ss_pred cCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHH
Q psy3611 9 LKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 88 (472)
Q Consensus 9 ~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~ 88 (472)
+++++.++++++.++... +..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.+++. .+.
T Consensus 50 l~~l~~l~l~~~~l~~lp----~~~~~~l~~L~~L~L~~n~l~--~~~~--~~~~~l~~L~~L~L~~n~l~~~----~~~ 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLP----AALLDSFRQVELLNLNDLQIE--EIDT--YAFAYAHTIQKLYMGFNAIRYL----PPH 117 (597)
T ss_dssp GCCCSEEEESSCEESEEC----THHHHHCCCCSEEECTTSCCC--EECT--TTTTTCTTCCEEECCSSCCCCC----CTT
T ss_pred CCCceEEEeeCCCCCCcC----HHHHccCCCCcEEECCCCCCC--CCCh--HHhcCCCCCCEEECCCCcCCCC----CHH
Confidence 567778888877766422 334566778888888888775 2323 4567778888888888877763 234
Q ss_pred HhhcCCcccEEECcCCccCcchHHHHHHH-hhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcc
Q psy3611 89 YLTDNTTLEDVNLTCNEISVQGGLDLVKA-MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDE 167 (472)
Q Consensus 89 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~-l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~ 167 (472)
.++.+++|++|++++|.++. ++.. +..+++|++|++++|.+....+..+. .++.|+.|.+....-. .
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~-----l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~l~~L~~L~L~~N~l~---~ 185 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSS-----LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ----ATTSLQNLQLSSNRLT---H 185 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCBCCTTTTT----TCTTCCEEECTTSCCS---B
T ss_pred HHcCCCCCCEEEeeCCCCCC-----CCHHHhccCCCCCEEEeeCCcCCCCChhhhh----cCCcCcEEECcCCCCC---C
Confidence 45667788888888887774 3333 46677888888888777643322221 1333333322211000 0
Q ss_pred ccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHH
Q psy3611 168 EQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLAD 247 (472)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 247 (472)
+ .+..++.|+.|++++|.++...
T Consensus 186 ~---------------------------------------------------~~~~l~~L~~L~l~~n~l~~l~------ 208 (597)
T 3oja_B 186 V---------------------------------------------------DLSLIPSLFHANVSYNLLSTLA------ 208 (597)
T ss_dssp C---------------------------------------------------CGGGCTTCSEEECCSSCCSEEE------
T ss_pred c---------------------------------------------------ChhhhhhhhhhhcccCcccccc------
Confidence 0 0223467888888888775432
Q ss_pred HHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEe
Q psy3611 248 LLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE 327 (472)
Q Consensus 248 ~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~ 327 (472)
..++|+.|++++|.++.... ..+++|+.|++++|.+.+. .++..+++|+.|+
T Consensus 209 -----~~~~L~~L~ls~n~l~~~~~-----------------~~~~~L~~L~L~~n~l~~~------~~l~~l~~L~~L~ 260 (597)
T 3oja_B 209 -----IPIAVEELDASHNSINVVRG-----------------PVNVELTILKLQHNNLTDT------AWLLNYPGLVEVD 260 (597)
T ss_dssp -----CCTTCSEEECCSSCCCEEEC-----------------SCCSCCCEEECCSSCCCCC------GGGGGCTTCSEEE
T ss_pred -----CCchhheeeccCCccccccc-----------------ccCCCCCEEECCCCCCCCC------hhhccCCCCCEEE
Confidence 22468888888888753221 1125788888888888752 3567788889999
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCC
Q psy3611 328 MPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 407 (472)
Q Consensus 328 l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L 407 (472)
+++|.+.... +..+..+++|+.|++++|.++.. +..+..+++|+.|++++|.+.. ++..+..+++|
T Consensus 261 Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~~l~~L 326 (597)
T 3oja_B 261 LSYNELEKIM----YHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRL 326 (597)
T ss_dssp CCSSCCCEEE----SGGGTTCSSCCEEECTTSCCCEE-----ECSSSCCTTCCEEECCSSCCCC-----CGGGHHHHTTC
T ss_pred CCCCccCCCC----HHHhcCccCCCEEECCCCCCCCC-----CcccccCCCCcEEECCCCCCCc-----cCcccccCCCC
Confidence 9888887432 45677788889999988888731 2334557888899998888875 55556667888
Q ss_pred CEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHH
Q psy3611 408 EDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV 450 (472)
Q Consensus 408 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~ 450 (472)
+.|+|++|.+... + +..+++|++|++++|++.....
T Consensus 327 ~~L~L~~N~l~~~-----~--~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 327 ENLYLDHNSIVTL-----K--LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp SEEECCSSCCCCC-----C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred CEEECCCCCCCCc-----C--hhhcCCCCEEEeeCCCCCChhH
Confidence 8999988888763 2 5677888889999888876543
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=2e-24 Score=217.38 Aligned_cols=320 Identities=20% Similarity=0.228 Sum_probs=239.1
Q ss_pred CCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHH
Q psy3611 37 NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 116 (472)
Q Consensus 37 ~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 116 (472)
+++++.|++.++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+. +.
T Consensus 45 l~~l~~L~l~~~~i~~---l~---~~~~l~~L~~L~Ls~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~~-----~~ 107 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS---ID---GVEYLNNLTQINFSNNQLTDI-----TP-LKNLTKLVDILMNNNQIADI-----TP 107 (466)
T ss_dssp HHTCCEEECCSSCCCC---CT---TGGGCTTCCEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCC-----GG
T ss_pred hccccEEecCCCCCcc---Cc---chhhhcCCCEEECCCCccCCc-----hh-hhccccCCEEECCCCccccC-----hh
Confidence 4689999999998753 22 367899999999999999874 23 77899999999999999863 22
Q ss_pred HhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCc
Q psy3611 117 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHS 196 (472)
Q Consensus 117 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (472)
+..+++|++|++++|.+....+ +..++.|+.|.+....-. .++ .......++.+++...
T Consensus 108 -~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~---~~~-----------~~~~l~~L~~L~l~~~ 166 (466)
T 1o6v_A 108 -LANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTIS---DIS-----------ALSGLTSLQQLSFGNQ 166 (466)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEEEEEEEEC---CCG-----------GGTTCTTCSEEEEEES
T ss_pred -hcCCCCCCEEECCCCCCCCChH------HcCCCCCCEEECCCCccC---CCh-----------hhccCCcccEeecCCc
Confidence 7889999999999998876432 455777777666543211 011 1122223333322100
Q ss_pred ccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHH
Q psy3611 197 HNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLS 276 (472)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~ 276 (472)
.... ..+..++.|++|++++|.+.... .+ ..+++|++|++++|.+++...
T Consensus 167 ----------------~~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l------~~l~~L~~L~l~~n~l~~~~~---- 216 (466)
T 1o6v_A 167 ----------------VTDL--KPLANLTTLERLDISSNKVSDIS--VL------AKLTNLESLIATNNQISDITP---- 216 (466)
T ss_dssp ----------------CCCC--GGGTTCTTCCEEECCSSCCCCCG--GG------GGCTTCSEEECCSSCCCCCGG----
T ss_pred ----------------ccCc--hhhccCCCCCEEECcCCcCCCCh--hh------ccCCCCCEEEecCCccccccc----
Confidence 0001 12567799999999999986542 11 346799999999999875421
Q ss_pred HHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEc
Q psy3611 277 KALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNL 356 (472)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l 356 (472)
++.+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.... .+..+++|++|++
T Consensus 217 ------------~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l 272 (466)
T 1o6v_A 217 ------------LGILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANNQISNLA------PLSGLTKLTELKL 272 (466)
T ss_dssp ------------GGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCG------GGTTCTTCSEEEC
T ss_pred ------------ccccCCCCEEECCCCCcccc------hhhhcCCCCCEEECCCCccccch------hhhcCCCCCEEEC
Confidence 23367899999999999863 24678999999999999998442 2778999999999
Q ss_pred cCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCccc
Q psy3611 357 NDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 436 (472)
Q Consensus 357 ~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 436 (472)
++|.+.... .+..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+.+. .. +..+++|+
T Consensus 273 ~~n~l~~~~------~~~~l~~L~~L~L~~n~l~~~-----~~-~~~l~~L~~L~L~~n~l~~~-----~~-~~~l~~L~ 334 (466)
T 1o6v_A 273 GANQISNIS------PLAGLTALTNLELNENQLEDI-----SP-ISNLKNLTYLTLYFNNISDI-----SP-VSSLTKLQ 334 (466)
T ss_dssp CSSCCCCCG------GGTTCTTCSEEECCSSCCSCC-----GG-GGGCTTCSEEECCSSCCSCC-----GG-GGGCTTCC
T ss_pred CCCccCccc------cccCCCccCeEEcCCCcccCc-----hh-hcCCCCCCEEECcCCcCCCc-----hh-hccCccCC
Confidence 999998421 267899999999999999863 22 67889999999999999874 22 77899999
Q ss_pred EEEccCCCCChhHHHHHHHHHHhCCceeEEecCCCC
Q psy3611 437 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 472 (472)
Q Consensus 437 ~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~~ 472 (472)
+|++++|++++. ..+..+++|+.|+++++.
T Consensus 335 ~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 335 RLFFYNNKVSDV------SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp EEECCSSCCCCC------GGGTTCTTCCEEECCSSC
T ss_pred EeECCCCccCCc------hhhccCCCCCEEeCCCCc
Confidence 999999998764 246779999999999863
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=2.6e-27 Score=246.67 Aligned_cols=166 Identities=15% Similarity=0.134 Sum_probs=92.7
Q ss_pred CCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhH--HH----------------H-HH-HHHhcC
Q psy3611 289 EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG--IT----------------A-LS-DAFEEN 348 (472)
Q Consensus 289 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~--~~----------------~-l~-~~l~~~ 348 (472)
++.+++|+.|++++|.+...+ ..+..+..+++|++|++++|.+.... +. . .+ ..+..+
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSG--CCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEE--ECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hccCCCCCEEECcCCccCCCc--chhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 345667777777777665421 01344556666666666666544211 00 0 01 133344
Q ss_pred CCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHH
Q psy3611 349 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 428 (472)
Q Consensus 349 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 428 (472)
++|++|++++|.+... .+..+..+++|++|++++|.+.+.. ++..+..+++|+.|++++|.++.. .+..
T Consensus 424 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~ 492 (606)
T 3vq2_A 424 EKLLYLDISYTNTKID----FDGIFLGLTSLNTLKMAGNSFKDNT---LSNVFANTTNLTFLDLSKCQLEQI----SWGV 492 (606)
T ss_dssp TTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEE----CTTT
T ss_pred ccCCEEECcCCCCCcc----chhhhcCCCCCCEEECCCCcCCCcc---hHHhhccCCCCCEEECCCCcCCcc----Chhh
Confidence 4455555555544421 1133455566666666666555311 244556667777777777777663 3455
Q ss_pred HhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 429 MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 429 l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+..+++|++|++++|+++.... ..+..+++|+.|+++++
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDS----SHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEG----GGTTTCTTCCEEECTTS
T ss_pred hcccccCCEEECCCCcCCCcCH----HHccCCCcCCEEECCCC
Confidence 6677777777777777765332 34455777888887775
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.5e-25 Score=232.43 Aligned_cols=293 Identities=19% Similarity=0.205 Sum_probs=224.3
Q ss_pred HHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
.+|.++++|++|+|++|.+.. ..+..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.++..
T Consensus 69 ~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~--~~~~--~~~~~l~~L~~L~L~~n~l~~l-- 138 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNAIR--YLPP--HVFQNVPLLTVLVLERNDLSSL-- 138 (597)
T ss_dssp HHHHHCCCCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCC--CCCT--TTTTTCTTCCEEECCSSCCCCC--
T ss_pred HHHccCCCCcEEECCCCCCCC----CChHHhcCCCCCCEEECCCCcCC--CCCH--HHHcCCCCCCEEEeeCCCCCCC--
Confidence 468899999999999999886 23557889999999999999986 3334 5678999999999999999863
Q ss_pred HHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCC
Q psy3611 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 163 (472)
Q Consensus 84 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~ 163 (472)
.+..++.+++|++|++++|.++.. .+..+..+++|++|++++|.++... +..++.++.|.+....
T Consensus 139 --~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~l~~L~~L~l~~n~-- 203 (597)
T 3oja_B 139 --PRGIFHNTPKLTTLSMSNNNLERI----EDDTFQATTSLQNLQLSSNRLTHVD-------LSLIPSLFHANVSYNL-- 203 (597)
T ss_dssp --CTTTTTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECTTSCCSBCC-------GGGCTTCSEEECCSSC--
T ss_pred --CHHHhccCCCCCEEEeeCCcCCCC----ChhhhhcCCcCcEEECcCCCCCCcC-------hhhhhhhhhhhcccCc--
Confidence 223357789999999999999863 3556788999999999999887642 1224444333322110
Q ss_pred CCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHH
Q psy3611 164 CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243 (472)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 243 (472)
... +.....|++|++++|.++.....
T Consensus 204 -l~~-----------------------------------------------------l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 204 -LST-----------------------------------------------------LAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp -CSE-----------------------------------------------------EECCTTCSEEECCSSCCCEEECS
T ss_pred -ccc-----------------------------------------------------ccCCchhheeeccCCcccccccc
Confidence 000 12246899999999998654321
Q ss_pred HHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCc
Q psy3611 244 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL 323 (472)
Q Consensus 244 ~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L 323 (472)
..++|+.|++++|.+++. ..++.+++|+.|++++|.+.+. .+..+..+++|
T Consensus 230 ---------~~~~L~~L~L~~n~l~~~----------------~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L 280 (597)
T 3oja_B 230 ---------VNVELTILKLQHNNLTDT----------------AWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRL 280 (597)
T ss_dssp ---------CCSCCCEEECCSSCCCCC----------------GGGGGCTTCSEEECCSSCCCEE----ESGGGTTCSSC
T ss_pred ---------cCCCCCEEECCCCCCCCC----------------hhhccCCCCCEEECCCCccCCC----CHHHhcCccCC
Confidence 125899999999999753 1234478999999999999874 45677889999
Q ss_pred cEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhc
Q psy3611 324 ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403 (472)
Q Consensus 324 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~ 403 (472)
+.|++++|.++. ++..+..+++|+.|++++|.+.. ++..+..+++|+.|++++|.+.+. + +..
T Consensus 281 ~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~~l~~L~~L~L~~N~l~~~-----~--~~~ 343 (597)
T 3oja_B 281 ERLYISNNRLVA-----LNLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVTL-----K--LST 343 (597)
T ss_dssp CEEECTTSCCCE-----EECSSSCCTTCCEEECCSSCCCC-----CGGGHHHHTTCSEEECCSSCCCCC-----C--CCT
T ss_pred CEEECCCCCCCC-----CCcccccCCCCcEEECCCCCCCc-----cCcccccCCCCCEEECCCCCCCCc-----C--hhh
Confidence 999999999984 23444568999999999999983 234456689999999999999863 2 567
Q ss_pred CCCCCEEECcCCCCCchh
Q psy3611 404 NTTLEDVNLTCNEISVQG 421 (472)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~ 421 (472)
++.|+.|++++|.+....
T Consensus 344 ~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp TCCCSEEECCSSCEEHHH
T ss_pred cCCCCEEEeeCCCCCChh
Confidence 799999999999988654
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=1.4e-25 Score=236.76 Aligned_cols=211 Identities=19% Similarity=0.240 Sum_probs=130.6
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
+.|++|++++|.+.......+... ..++|++|++++|.++... +..++.+++|+.|++++|.
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l----~~~~L~~L~Ls~n~l~~~~--------------~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGL----KWTNLTMLDLSYNNLNVVG--------------NDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGG----GGSCCCEEECTTSCCCEEC--------------TTTTTTCTTCCEEECCSCC
T ss_pred ccccEEEccCCcccccChhHhhcc----CcCCCCEEECCCCCcCccC--------------cccccCcccccEeeCCCCc
Confidence 566666666666644433333221 1124777777776665321 1223456777888888777
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChh-HHHHHHH----HHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCC
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHV-GITALSD----AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSL 379 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~----~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L 379 (472)
+... .+.++..+++|+.|++++|..... ....++. .+..+++|++|++++|.+.... +..+..+++|
T Consensus 284 l~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L 355 (680)
T 1ziw_A 284 IQHL----FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK----SNMFTGLINL 355 (680)
T ss_dssp BSEE----CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC----TTTTTTCTTC
T ss_pred cCcc----ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC----hhHhccccCC
Confidence 7653 344566777888888776643310 0111111 4556788888888888877422 2456778888
Q ss_pred cEEEcCCCCCChHHHHHHH-HHhh--cCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHH
Q psy3611 380 AILNLGDCLLKSAGASSIA-KYLT--DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456 (472)
Q Consensus 380 ~~L~l~~~~i~~~~~~~l~-~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 456 (472)
++|++++|.+.... ++ ..+. ..++|+.|++++|.+... .+..+..+++|++|++++|+++..... ..
T Consensus 356 ~~L~Ls~n~~~~~~---l~~~~f~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~ 425 (680)
T 1ziw_A 356 KYLSLSNSFTSLRT---LTNETFVSLAHSPLHILNLTKNKISKI----ESDAFSWLGHLEVLDLGLNEIGQELTG---QE 425 (680)
T ss_dssp CEEECTTCBSCCCE---ECTTTTGGGTTSCCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCEEECCS---GG
T ss_pred cEEECCCCchhhhh---cchhhhcccccCcCceEECCCCCCCeE----ChhhhhCCCCCCEEeCCCCcCccccCc---cc
Confidence 88888887643211 11 1111 226789999999988874 356778889999999999987542111 34
Q ss_pred HHhCCceeEEecCCC
Q psy3611 457 MKSFGMAAALVLEDD 471 (472)
Q Consensus 457 l~~~~~L~~L~l~~~ 471 (472)
+..+++|+.|+++++
T Consensus 426 ~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 426 WRGLENIFEIYLSYN 440 (680)
T ss_dssp GTTCTTCCEEECCSC
T ss_pred ccCcccccEEecCCC
Confidence 566899999999886
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=1.3e-25 Score=241.98 Aligned_cols=182 Identities=18% Similarity=0.171 Sum_probs=91.3
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 334 (472)
++|++|++++|.++.. .+..+..+++|+.|++++|.+... .+.++..+++|+.|++++|.++
T Consensus 266 ~~L~~L~Ls~n~l~~~--------------~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL--------------NSRVFETLKDLKVLNLAYNKINKI----ADEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp SCCCEEECTTCCCCEE--------------CSCCSSSCCCCCEEEEESCCCCEE----CTTTTTTCSSCCEEEEESCCCS
T ss_pred CCccEEECCCCccccc--------------ChhhhhcCCCCCEEECCCCcCCCC----ChHHhcCCCCCCEEECCCCCCC
Confidence 4566666666665422 112334456666666666666542 2334555666666666666654
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHH--------------HHHHHH
Q psy3611 335 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA--------------SSIAKY 400 (472)
Q Consensus 335 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~--------------~~l~~~ 400 (472)
... +..+.++++|+.|++++|.+..... ..+..+++|+.|++++|.++.... ..++
T Consensus 328 ~~~----~~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~-- 397 (844)
T 3j0a_A 328 ELY----SSNFYGLPKVAYIDLQKNHIAIIQD----QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP-- 397 (844)
T ss_dssp CCC----SCSCSSCTTCCEEECCSCCCCCCCS----SCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCC--
T ss_pred ccC----HHHhcCCCCCCEEECCCCCCCccCh----hhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccc--
Confidence 221 3344556666666666666553211 234556666666666666553100 0011
Q ss_pred hhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 401 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 401 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
....+++.+++++|.+...+ ....+..+++|++|++++|+++..... ..+..+++|+.|+++++
T Consensus 398 -~~~~~l~~L~ls~N~l~~l~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 398 -KINLTANLIHLSENRLENLD---ILYFLLRVPHLQILILNQNRFSSCSGD---QTPSENPSLEQLFLGEN 461 (844)
T ss_dssp -CCCTTCCEEECCSCCCCSST---THHHHTTCTTCCEEEEESCCCCCCCSS---SSSCSCTTCCBCEEESC
T ss_pred -ccccccceeecccCccccCc---hhhhhhcCCccceeeCCCCcccccccc---cccccCCccccccCCCC
Confidence 01234444555555444422 122344566777777777666432111 01223566666666654
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=9.2e-26 Score=228.01 Aligned_cols=317 Identities=19% Similarity=0.217 Sum_probs=242.3
Q ss_pred cEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhc
Q psy3611 13 EHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 92 (472)
Q Consensus 13 ~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~ 92 (472)
+.++.+++.++. +|..+ .+++++|++++|.+.. ..+ ..|..+++|++|++++|.+++. .+..+..
T Consensus 14 ~~v~c~~~~l~~-----ip~~~--~~~l~~L~L~~n~l~~--~~~--~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~ 78 (477)
T 2id5_A 14 RAVLCHRKRFVA-----VPEGI--PTETRLLDLGKNRIKT--LNQ--DEFASFPHLEELELNENIVSAV----EPGAFNN 78 (477)
T ss_dssp TEEECCSCCCSS-----CCSCC--CTTCSEEECCSSCCCE--ECT--TTTTTCTTCCEEECTTSCCCEE----CTTTTTT
T ss_pred CEEEeCCCCcCc-----CCCCC--CCCCcEEECCCCccce--ECH--hHccCCCCCCEEECCCCccCEe----ChhhhhC
Confidence 577777777663 45443 3689999999999863 333 5688999999999999999874 3556778
Q ss_pred CCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchh
Q psy3611 93 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEE 172 (472)
Q Consensus 93 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~ 172 (472)
+++|++|++++|.++.. ....+..+++|++|++++|.+....+.
T Consensus 79 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~-------------------------------- 122 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLI----PLGVFTGLSNLTKLDISENKIVILLDY-------------------------------- 122 (477)
T ss_dssp CTTCCEEECCSSCCCSC----CTTSSTTCTTCCEEECTTSCCCEECTT--------------------------------
T ss_pred CccCCEEECCCCcCCcc----CcccccCCCCCCEEECCCCccccCChh--------------------------------
Confidence 89999999999998852 123457789999999999988642111
Q ss_pred hhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhcc
Q psy3611 173 SEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSS 252 (472)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~ 252 (472)
.+..+++|++|++++|.+.......+ .
T Consensus 123 -----------------------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~------~ 149 (477)
T 2id5_A 123 -----------------------------------------------MFQDLYNLKSLEVGDNDLVYISHRAF------S 149 (477)
T ss_dssp -----------------------------------------------TTTTCTTCCEEEECCTTCCEECTTSS------T
T ss_pred -----------------------------------------------HccccccCCEEECCCCccceeChhhc------c
Confidence 12345899999999999866544333 3
Q ss_pred CCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCC
Q psy3611 253 CCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 332 (472)
Q Consensus 253 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 332 (472)
.+++|++|++++|.++......+ ..+++|+.|++++|.+... .+..+..+++|+.|++++|.
T Consensus 150 ~l~~L~~L~l~~n~l~~~~~~~l--------------~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 150 GLNSLEQLTLEKCNLTSIPTEAL--------------SHLHGLIVLRLRHLNINAI----RDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp TCTTCCEEEEESCCCSSCCHHHH--------------TTCTTCCEEEEESCCCCEE----CTTCSCSCTTCCEEEEECCT
T ss_pred CCCCCCEEECCCCcCcccChhHh--------------cccCCCcEEeCCCCcCcEe----ChhhcccCcccceeeCCCCc
Confidence 46799999999999876543333 3368999999999999863 23356788999999999987
Q ss_pred CChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEC
Q psy3611 333 IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNL 412 (472)
Q Consensus 333 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L 412 (472)
.... ++.......+|++|++++|.++.... ..+..+++|+.|++++|.+.+. .+..+..+++|+.|+|
T Consensus 212 ~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L 279 (477)
T 2id5_A 212 YLDT----MTPNCLYGLNLTSLSITHCNLTAVPY----LAVRHLVYLRFLNLSYNPISTI----EGSMLHELLRLQEIQL 279 (477)
T ss_dssp TCCE----ECTTTTTTCCCSEEEEESSCCCSCCH----HHHTTCTTCCEEECCSSCCCEE----CTTSCTTCTTCCEEEC
T ss_pred cccc----cCcccccCccccEEECcCCcccccCH----HHhcCccccCeeECCCCcCCcc----ChhhccccccCCEEEC
Confidence 5432 22333345689999999999985332 5678899999999999999864 3356678899999999
Q ss_pred cCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 413 TCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 413 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
++|.+... .+..+..+++|++|++++|.++.... ..+..+++|+.|++++|
T Consensus 280 ~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 280 VGGQLAVV----EPYAFRGLNYLRVLNVSGNQLTTLEE----SVFHSVGNLETLILDSN 330 (477)
T ss_dssp CSSCCSEE----CTTTBTTCTTCCEEECCSSCCSCCCG----GGBSCGGGCCEEECCSS
T ss_pred CCCccceE----CHHHhcCcccCCEEECCCCcCceeCH----hHcCCCcccCEEEccCC
Confidence 99999874 36678889999999999999875433 34456889999999987
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=2.6e-24 Score=221.83 Aligned_cols=371 Identities=17% Similarity=0.152 Sum_probs=235.3
Q ss_pred HHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchh
Q psy3611 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG 82 (472)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~ 82 (472)
++.|.++++|++|++++|.++. ..+..+..+++|++|++++|.+. .++ .. .+++|++|++++|.+++.
T Consensus 69 ~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~---~lp--~~--~l~~L~~L~Ls~N~l~~l- 136 (562)
T 3a79_B 69 MPDISFLSELRVLRLSHNRIRS----LDFHVFLFNQDLEYLDVSHNRLQ---NIS--CC--PMASLRHLDLSFNDFDVL- 136 (562)
T ss_dssp GGGTTTCTTCCEEECCSCCCCE----ECTTTTTTCTTCCEEECTTSCCC---EEC--SC--CCTTCSEEECCSSCCSBC-
T ss_pred hhhhccCCCccEEECCCCCCCc----CCHHHhCCCCCCCEEECCCCcCC---ccC--cc--ccccCCEEECCCCCcccc-
Confidence 3578999999999999999886 23677888999999999999985 334 22 688999999999998864
Q ss_pred HHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCc--cEEEecCCcC--Chh---------------------
Q psy3611 83 ASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL--KQINVSENQF--GEE--------------------- 137 (472)
Q Consensus 83 ~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L--~~L~l~~~~i--~~~--------------------- 137 (472)
.++..++.+++|++|++++|.+...+ +..+++| ++|++++|.+ ...
T Consensus 137 --~~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 207 (562)
T 3a79_B 137 --PVCKEFGNLTKLTFLGLSAAKFRQLD-------LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207 (562)
T ss_dssp --CCCGGGGGCTTCCEEEEECSBCCTTT-------TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred --CchHhhcccCcccEEecCCCccccCc-------hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence 23456788899999999999887632 2223333 7777776655 111
Q ss_pred -----------------------------hHHHHHHHHHhchhhHHhhhccCCC--CCCccccchhhhcccCCccccCCC
Q psy3611 138 -----------------------------GVEEMEKLMKSFGMAAALVLEDDEG--ECSDEEQDEESEEENDSDAEGDNS 186 (472)
Q Consensus 138 -----------------------------~~~~l~~~l~~~~~l~~L~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~ 186 (472)
........+...+.++.+.+....- .....++... .. ......
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~---~~---~~L~~L 281 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF---WP---RPVEYL 281 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH---TT---SSEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh---hc---ccccEE
Confidence 1111222233333333222221100 0000000000 00 000000
Q ss_pred ccCCCCCCCcccc-----------c---ccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhcc
Q psy3611 187 NLSHNDSNHSHNA-----------S---NQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSS 252 (472)
Q Consensus 187 ~~~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~ 252 (472)
++.+..+....+. . .....+.. ..........+ ....|++|++++|.+..... ..
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~-~~~~L~~L~l~~n~~~~~~~--------~~ 350 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVF-AEMNIKMLSISDTPFIHMVC--------PP 350 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHH-HTCCCSEEEEESSCCCCCCC--------CS
T ss_pred EEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhh-ccCcceEEEccCCCcccccC--------cc
Confidence 0000000000000 0 00000000 00001111111 22578888888888744321 02
Q ss_pred CCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCC
Q psy3611 253 CCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 332 (472)
Q Consensus 253 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 332 (472)
.+++|++|++++|.+++.. +..++.+++|+.|++++|.+... ..++..+..+++|+.|++++|+
T Consensus 351 ~l~~L~~L~l~~n~l~~~~--------------~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSV--------------FQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp SCCCCCEEECCSSCCCTTT--------------TTTCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEEECTTSC
T ss_pred CCCCceEEECCCCccccch--------------hhhhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEEECCCCc
Confidence 4578999999999987422 23456678999999999999852 2356677889999999999999
Q ss_pred CChhHHHHHH-HHHhcCCCccEEEccCCCCCcccHHHHHHHhcCC-CCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEE
Q psy3611 333 IYHVGITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL-PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV 410 (472)
Q Consensus 333 i~~~~~~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L 410 (472)
++.. ++ ..+..+++|++|++++|.++.. ..... ++|+.|++++|.++. ++..+..+++|+.|
T Consensus 415 l~~~----~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~l~~~L~~L~L~~N~l~~-----ip~~~~~l~~L~~L 478 (562)
T 3a79_B 415 LNSH----AYDRTCAWAESILVLNLSSNMLTGS-------VFRCLPPKVKVLDLHNNRIMS-----IPKDVTHLQALQEL 478 (562)
T ss_dssp CBSC----CSSCCCCCCTTCCEEECCSSCCCGG-------GGSSCCTTCSEEECCSSCCCC-----CCTTTTSSCCCSEE
T ss_pred CCCc----cChhhhcCcccCCEEECCCCCCCcc-------hhhhhcCcCCEEECCCCcCcc-----cChhhcCCCCCCEE
Confidence 8741 12 2456789999999999999732 12233 699999999999985 77766788999999
Q ss_pred ECcCCCCCchhHHHHHHH-HhcCCcccEEEccCCCCChh
Q psy3611 411 NLTCNEISVQGGLDLVKA-MKNKTKLKQINVSENQFGEE 448 (472)
Q Consensus 411 ~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~l~~n~i~~~ 448 (472)
++++|.++. ++.. +..+++|++|++++|++...
T Consensus 479 ~L~~N~l~~-----l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 479 NVASNQLKS-----VPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp ECCSSCCCC-----CCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred ECCCCCCCC-----CCHHHHhcCCCCCEEEecCCCcCCC
Confidence 999999986 5655 78899999999999998754
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=6.2e-26 Score=234.45 Aligned_cols=390 Identities=17% Similarity=0.161 Sum_probs=206.1
Q ss_pred HHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
.+|.++++|++|++++|.+... .+..+..+++|++|++++|.+..... ..+..+++|++|++++|.+.+.
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~-- 139 (570)
T 2z63_A 70 GAYQSLSHLSTLILTGNPIQSL----ALGAFSGLSSLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSF-- 139 (570)
T ss_dssp TTTTTCTTCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTSCCCCSTT----CSCTTCTTCCEEECCSSCCCCC--
T ss_pred ccccCchhCCEEeCcCCcCCcc----CHhhhcCccccccccccccccccCCC----ccccccccccEEecCCCcccee--
Confidence 5688999999999999988862 25678899999999999998864332 2378899999999999988763
Q ss_pred HHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCc----cEEEecCCcCChhhHHH------------------
Q psy3611 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL----KQINVSENQFGEEGVEE------------------ 141 (472)
Q Consensus 84 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L----~~L~l~~~~i~~~~~~~------------------ 141 (472)
.++..++.+++|++|++++|.++... +..+..+++| +.|++++|.+....+..
T Consensus 140 -~lp~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 214 (570)
T 2z63_A 140 -KLPEYFSNLTNLEHLDLSSNKIQSIY----CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 214 (570)
T ss_dssp -CCCGGGGGCTTCCEEECTTSCCCEEC----GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCT
T ss_pred -cChhhhcccCCCCEEeCcCCccceec----HHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccc
Confidence 24667888999999999999887632 2223333344 56666666554322211
Q ss_pred --HHHHHHhchhhHHhh--hccCCC---------CCCccccchh----------hhcccCCccccCCCccCCCCCCCccc
Q psy3611 142 --MEKLMKSFGMAAALV--LEDDEG---------ECSDEEQDEE----------SEEENDSDAEGDNSNLSHNDSNHSHN 198 (472)
Q Consensus 142 --l~~~l~~~~~l~~L~--~~~~~~---------~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (472)
+...+..++.+..+. ...+.. .....+.... ..............+++.+++..-..
T Consensus 215 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 294 (570)
T 2z63_A 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294 (570)
T ss_dssp THHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE
T ss_pred cchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc
Confidence 111122222221100 000000 0000000000 00000000011111111111110000
Q ss_pred cc------------ccccCCCCcccccch--------------hhhhhhhcCCcccEEeCCCCCCChhh--HHHHHHHHh
Q psy3611 199 AS------------NQSHNNSNQSHNTSN--------------QSHMSLKTGARLVELDLSDNAFGPIG--VEGLADLLR 250 (472)
Q Consensus 199 ~~------------~~~~~~~~~~~~~~~--------------~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~l~~~l~ 250 (472)
.. ....++......... ........+++|++|++++|.++... ...+.
T Consensus 295 ~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~---- 370 (570)
T 2z63_A 295 ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF---- 370 (570)
T ss_dssp CSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHH----
T ss_pred hhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccc----
Confidence 00 000000000000000 00000034466666666666664332 12221
Q ss_pred ccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCC
Q psy3611 251 SSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ 330 (472)
Q Consensus 251 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~ 330 (472)
.+++|++|++++|.++... ..++.+++|+.|++++|.+.... ....+..+++|+.|++++
T Consensus 371 --~~~~L~~L~l~~n~l~~~~---------------~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 371 --GTTSLKYLDLSFNGVITMS---------------SNFLGLEQLEHLDFQHSNLKQMS---EFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp --TCSCCCEEECCSCSEEEEE---------------EEEETCTTCCEEECTTSEEESCT---TSCTTTTCTTCCEEECTT
T ss_pred --ccCccCEEECCCCcccccc---------------ccccccCCCCEEEccCCcccccc---chhhhhcCCCCCEEeCcC
Confidence 2456666666666653211 11334566777777777665420 012345667777777777
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEE
Q psy3611 331 NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV 410 (472)
Q Consensus 331 ~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L 410 (472)
|.+... .+..+.++++|++|++++|.+.+.. ++..+..+++|+.|++++|.+++. .+..+..+++|+.|
T Consensus 431 n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---~p~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L 499 (570)
T 2z63_A 431 THTRVA----FNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQL----SPTAFNSLSSLQVL 499 (570)
T ss_dssp SCCEEC----CTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEE
T ss_pred Cccccc----chhhhhcCCcCcEEECcCCcCcccc---chhhhhcccCCCEEECCCCccccC----ChhhhhcccCCCEE
Confidence 766532 2345556777777777777664211 224556677777777777777653 34556666777777
Q ss_pred ECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 411 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 411 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
++++|.++.. .+..+..+++|++|++++|+++.
T Consensus 500 ~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 500 NMASNQLKSV----PDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp ECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCC
T ss_pred eCCCCcCCCC----CHHHhhcccCCcEEEecCCcccC
Confidence 7777776653 23456667777777777777654
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=7.7e-25 Score=231.05 Aligned_cols=356 Identities=20% Similarity=0.217 Sum_probs=221.8
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
+++++|++++|.++. ..+..+..+++|++|++++|.+. +..+ .++..+++|++|++++|.++... +..
T Consensus 25 ~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~--~~~~--~~~~~l~~L~~L~L~~n~l~~l~----~~~ 92 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR----LPAANFTRYSQLTSLDVGFNTIS--KLEP--ELCQKLPMLKVLNLQHNELSQLS----DKT 92 (680)
T ss_dssp TTCSEEECCSSCCCC----CCGGGGGGGTTCSEEECCSSCCC--CCCT--THHHHCTTCCEEECCSSCCCCCC----TTT
T ss_pred CCCcEEECCCCCCCC----cCHHHHhCCCcCcEEECCCCccC--ccCH--HHHhcccCcCEEECCCCccCccC----hhh
Confidence 567888888887765 22445777788888888887765 3333 55677788888888888777521 124
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcccc
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQ 169 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~ 169 (472)
++.+++|++|++++|.+... .+..+..+++|++|++++|.+....+..+ ..+++|+.|.+....-
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~n~l------- 157 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKI----KNNPFVKQKNLITLDLSHNGLSSTKLGTQ----VQLENLQELLLSNNKI------- 157 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCC----CSCTTTTCTTCCEEECCSSCCSCCCCCSS----SCCTTCCEEECCSSCC-------
T ss_pred hccCCCCCEEECCCCccCcc----ChhHccccCCCCEEECCCCcccccCchhh----cccccCCEEEccCCcc-------
Confidence 56678888888888877642 22456677788888888877654322211 1123333222211100
Q ss_pred chhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhh--hhcCCcccEEeCCCCCCChhhHHHHHH
Q psy3611 170 DEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMS--LKTGARLVELDLSDNAFGPIGVEGLAD 247 (472)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~l~~ 247 (472)
....... ...+++|++|++++|.+.......+.
T Consensus 158 --------------------------------------------~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~- 192 (680)
T 1ziw_A 158 --------------------------------------------QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH- 192 (680)
T ss_dssp --------------------------------------------CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG-
T ss_pred --------------------------------------------cccCHHHhhccccccccEEECCCCcccccChhhhh-
Confidence 0000000 11246788888888877554433332
Q ss_pred HHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcC--CCccE
Q psy3611 248 LLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL--KTLER 325 (472)
Q Consensus 248 ~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~--~~L~~ 325 (472)
.+++|+.|++.++.+++.....+...+. .++|+.|++++|.+.+. .+.++..+ ++|++
T Consensus 193 -----~l~~L~~L~l~~~~l~~~~~~~~~~~l~-----------~~~L~~L~L~~n~l~~~----~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 193 -----AIGRLFGLFLNNVQLGPSLTEKLCLELA-----------NTSIRNLSLSNSQLSTT----SNTTFLGLKWTNLTM 252 (680)
T ss_dssp -----GSSEECEEECTTCCCHHHHHHHHHHHHT-----------TSCCCEEECTTSCCCEE----CTTTTGGGGGSCCCE
T ss_pred -----hhhhhhhhhccccccChhhHHHHHHHhh-----------hccccEEEccCCccccc----ChhHhhccCcCCCCE
Confidence 3457888888887776655555544332 25788889988888764 33344444 35999
Q ss_pred EeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHH-HHHHHH----H
Q psy3611 326 VEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG-ASSIAK----Y 400 (472)
Q Consensus 326 L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~-~~~l~~----~ 400 (472)
|++++|.+.... +..+..+++|++|++++|.+.... +..+..+++|+.|++++|.....- ...++. .
T Consensus 253 L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 253 LDLSYNNLNVVG----NDSFAWLPQLEYFFLEYNNIQHLF----SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp EECTTSCCCEEC----TTTTTTCTTCCEEECCSCCBSEEC----TTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred EECCCCCcCccC----cccccCcccccEeeCCCCccCccC----hhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 999998887432 455677888999999998887432 256777888999999877544210 001221 4
Q ss_pred hhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHH--hCCceeEEecCCC
Q psy3611 401 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMK--SFGMAAALVLEDD 471 (472)
Q Consensus 401 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~--~~~~L~~L~l~~~ 471 (472)
+..+++|+.|++++|.+... .+..+..+++|++|++++|.++...... ..+. ..++|+.|+++++
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~l~~--~~f~~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGI----KSNMFTGLINLKYLSLSNSFTSLRTLTN--ETFVSLAHSPLHILNLTKN 391 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCC----CTTTTTTCTTCCEEECTTCBSCCCEECT--TTTGGGTTSCCCEEECTTS
T ss_pred cccCCCCCEEECCCCccCCC----ChhHhccccCCcEEECCCCchhhhhcch--hhhcccccCcCceEECCCC
Confidence 56678999999999988764 3556778889999999988643221110 0111 1357888888875
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=9.5e-25 Score=235.34 Aligned_cols=112 Identities=24% Similarity=0.294 Sum_probs=87.5
Q ss_pred cCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchH-HHHHHhccCCCCcEEeccCccccchhHHHHH
Q psy3611 9 LKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAI-PLGQALSKLPSLAILNLGDCLLKSAGASSIA 87 (472)
Q Consensus 9 ~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~ 87 (472)
.++|++|+|++|.++. ..+..+..+++|++|++++|... +.+ + ..+..+++|++|++++|.+.+. .+
T Consensus 23 p~~l~~LdLs~N~i~~----i~~~~~~~l~~L~~LdLs~n~~~--~~i~~--~~f~~L~~L~~L~Ls~N~l~~~----~p 90 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRT----VTASSFPFLEQLQLLELGSQYTP--LTIDK--EAFRNLPNLRILDLGSSKIYFL----HP 90 (844)
T ss_dssp CTTCCEEEEESCCCCE----ECSSSCSSCCSCSEEEECTTCCC--CEECT--TTTSSCTTCCEEECTTCCCCEE----CT
T ss_pred CCCcCEEECCCCcCCc----cChhHCcccccCeEEeCCCCCCc--cccCH--HHhcCCCCCCEEECCCCcCccc----CH
Confidence 4679999999998876 23567888999999999998542 333 3 5688899999999999998863 45
Q ss_pred HHhhcCCcccEEECcCCccCcchHHHHHHH--hhhCCCccEEEecCCcCCh
Q psy3611 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKA--MKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~--l~~~~~L~~L~l~~~~i~~ 136 (472)
..++.+++|++|++++|.+++. ++.. +..+++|++|++++|.+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~~L~~L~~L~Ls~N~l~~ 137 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDA----VLKDGYFRNLKALTRLDLSKNQIRS 137 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSC----CSTTCCCSSCSSCCEEEEESCCCCC
T ss_pred hHccCCcccCEeeCcCCCCCcc----cccCccccccCCCCEEECCCCcccc
Confidence 6777889999999999988752 2222 6778899999999998764
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.8e-23 Score=209.20 Aligned_cols=301 Identities=18% Similarity=0.167 Sum_probs=209.8
Q ss_pred HhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHH
Q psy3611 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 84 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~ 84 (472)
.+.++++|++|++++|.++. ++ .+..+++|++|++++|.+... + +..+++|++|++++|.+++.
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-----~~-~l~~l~~L~~L~Ls~n~l~~~---~----~~~l~~L~~L~Ls~N~l~~~--- 100 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-----MT-GIEKLTGLTKLICTSNNITTL---D----LSQNTNLTYLACDSNKLTNL--- 100 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-----CT-TGGGCTTCSEEECCSSCCSCC---C----CTTCTTCSEEECCSSCCSCC---
T ss_pred ChhHcCCCCEEEccCCCccc-----Ch-hhcccCCCCEEEccCCcCCeE---c----cccCCCCCEEECcCCCCcee---
Confidence 46679999999999998885 23 578899999999999998642 3 67889999999999999874
Q ss_pred HHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCC
Q psy3611 85 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 164 (472)
Q Consensus 85 ~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~ 164 (472)
+ ++.+++|++|++++|.++.. + +..+++|++|++++|.++... +..++.|+.|.+.....
T Consensus 101 --~--~~~l~~L~~L~L~~N~l~~l-----~--~~~l~~L~~L~l~~N~l~~l~-------l~~l~~L~~L~l~~n~~-- 160 (457)
T 3bz5_A 101 --D--VTPLTKLTYLNCDTNKLTKL-----D--VSQNPLLTYLNCARNTLTEID-------VSHNTQLTELDCHLNKK-- 160 (457)
T ss_dssp --C--CTTCTTCCEEECCSSCCSCC-----C--CTTCTTCCEEECTTSCCSCCC-------CTTCTTCCEEECTTCSC--
T ss_pred --e--cCCCCcCCEEECCCCcCCee-----c--CCCCCcCCEEECCCCccceec-------cccCCcCCEEECCCCCc--
Confidence 1 67789999999999999862 2 678899999999999887521 22344444443322110
Q ss_pred CccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHH
Q psy3611 165 SDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244 (472)
Q Consensus 165 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 244 (472)
...+ .+..+++|++|++++|.++...
T Consensus 161 ~~~~---------------------------------------------------~~~~l~~L~~L~ls~n~l~~l~--- 186 (457)
T 3bz5_A 161 ITKL---------------------------------------------------DVTPQTQLTTLDCSFNKITELD--- 186 (457)
T ss_dssp CCCC---------------------------------------------------CCTTCTTCCEEECCSSCCCCCC---
T ss_pred cccc---------------------------------------------------ccccCCcCCEEECCCCccceec---
Confidence 0000 1234578888888888885532
Q ss_pred HHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCcc
Q psy3611 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLE 324 (472)
Q Consensus 245 l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~ 324 (472)
...+++|++|++++|.++.. .++.+++|+.|++++|.+.+ ++ +..+++|+
T Consensus 187 ------l~~l~~L~~L~l~~N~l~~~-----------------~l~~l~~L~~L~Ls~N~l~~-----ip--~~~l~~L~ 236 (457)
T 3bz5_A 187 ------VSQNKLLNRLNCDTNNITKL-----------------DLNQNIQLTFLDCSSNKLTE-----ID--VTPLTQLT 236 (457)
T ss_dssp ------CTTCTTCCEEECCSSCCSCC-----------------CCTTCTTCSEEECCSSCCSC-----CC--CTTCTTCS
T ss_pred ------cccCCCCCEEECcCCcCCee-----------------ccccCCCCCEEECcCCcccc-----cC--ccccCCCC
Confidence 13457888888888888643 13446788888888888875 33 56778888
Q ss_pred EEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcc--------cHHHHHHHhcCCCCCcEEEcCCCCCChHHHHH
Q psy3611 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYK--------GAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396 (472)
Q Consensus 325 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~--------~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~ 396 (472)
.|++++|+++... +..+++|+.|++++|.+..- +. + ....+++|+.|++++|...+.
T Consensus 237 ~L~l~~N~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~--~--~~~~l~~L~~L~Ls~n~~l~~---- 301 (457)
T 3bz5_A 237 YFDCSVNPLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIY--F--QAEGCRKIKELDVTHNTQLYL---- 301 (457)
T ss_dssp EEECCSSCCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCE--E--ECTTCTTCCCCCCTTCTTCCE----
T ss_pred EEEeeCCcCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCc--c--cccccccCCEEECCCCcccce----
Confidence 8888888887431 23455555555444433210 11 1 124567888888888864321
Q ss_pred HHH--------HhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 397 IAK--------YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 397 l~~--------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
++. .+..+++|+.|++++|.++. + .+..+++|++|++++|++++
T Consensus 302 l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-----l--~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 302 LDCQAAGITELDLSQNPKLVYLYLNNTELTE-----L--DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp EECTTCCCSCCCCTTCTTCCEEECTTCCCSC-----C--CCTTCTTCSEEECCSSCCCB
T ss_pred eccCCCcceEechhhcccCCEEECCCCcccc-----c--ccccCCcCcEEECCCCCCCC
Confidence 110 24566888999999998876 3 27788899999999998874
No 46
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.88 E-value=2.2e-21 Score=188.30 Aligned_cols=213 Identities=20% Similarity=0.218 Sum_probs=183.8
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
+.|++|++++|.+++..+..++..+... +++|++|+|++|.+++.+...++..+. +|+.|++++|.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~L~-------------~L~~L~Ls~n~ 137 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSG-RHALDEVNLASCQLDPAGLRTLLPVFL-------------RARKLGLQLNS 137 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSC-SSCEEEEECTTCCCCHHHHHHTHHHHH-------------TEEEEECCSSC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhC-CCCceEEEecCCCCCHHHHHHHHHHHH-------------hccHhhcCCCC
Confidence 7899999999999999999999988643 358999999999999999888877654 58999999999
Q ss_pred CChhhHHHHHHHHh-cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEE
Q psy3611 305 LENEGAKMLAAVFK-KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383 (472)
Q Consensus 305 l~~~~~~~l~~~~~-~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 383 (472)
+++.++..+...+. .+++|++|++++|.+++.++..++.++..+++|++|++++|.+++.|+..+++.+..+++|+.|+
T Consensus 138 l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 138 LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEE
T ss_pred CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEE
Confidence 99999999988885 57899999999999999999999999999999999999999999999989999999999999999
Q ss_pred cCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcC-CcccEEE--ccCCCCChhHHH
Q psy3611 384 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQIN--VSENQFGEEGVE 451 (472)
Q Consensus 384 l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~--l~~n~i~~~~~~ 451 (472)
+++|.+++.|+..++.++..+++|+.|+|++|.|++.|+..+....... ..|+.+. +.++.++.....
T Consensus 218 Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~~~ 288 (372)
T 3un9_A 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSV 288 (372)
T ss_dssp CCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHHHH
Confidence 9999999999999999999999999999999999999988777754433 2388888 778877655433
No 47
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.87 E-value=5.4e-21 Score=185.60 Aligned_cols=201 Identities=21% Similarity=0.274 Sum_probs=177.9
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 334 (472)
+.|++|++++|.+++.+...++..+... +++|+.|++++|.+++.+...+...+ ++|++|++++|.++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~---------~~~L~~L~Ls~n~l~~~~~~~l~~~L---~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSG---------RHALDEVNLASCQLDPAGLRTLLPVF---LRARKLGLQLNSLG 139 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSC---------SSCEEEEECTTCCCCHHHHHHTHHHH---HTEEEEECCSSCCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhC---------CCCceEEEecCCCCCHHHHHHHHHHH---HhccHhhcCCCCCC
Confidence 4799999999999999999998887643 35899999999999988777666554 47999999999999
Q ss_pred hhHHHHHHHHHh-cCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECc
Q psy3611 335 HVGITALSDAFE-ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT 413 (472)
Q Consensus 335 ~~~~~~l~~~l~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~ 413 (472)
+.++..++..+. .+++|++|++++|.+++.|+..++..+..+++|++|++++|.+++.|+..++.++..+++|+.|+|+
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 999999998885 5789999999999999989989999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCC-ceeEEe
Q psy3611 414 CNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFG-MAAALV 467 (472)
Q Consensus 414 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~-~L~~L~ 467 (472)
+|.|++.|+..++.++..+++|++|++++|+|++.+...+.++..... .++.+.
T Consensus 220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~ 274 (372)
T 3un9_A 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVV 274 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEEC
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhH
Confidence 999999999999999999999999999999999999998887544331 266665
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=3e-23 Score=199.22 Aligned_cols=296 Identities=21% Similarity=0.231 Sum_probs=189.1
Q ss_pred CCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHh
Q psy3611 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM 118 (472)
Q Consensus 39 ~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l 118 (472)
++++++++++.+. .+| ..+ .+++++|++++|.+++.. +..+..+++|++|++++|.++.. .+..+
T Consensus 32 ~l~~l~~~~~~l~---~lp--~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLE---KVP--KDL--PPDTALLDLQNNKITEIK----DGDFKNLKNLHTLILINNKISKI----SPGAF 96 (330)
T ss_dssp ETTEEECTTSCCC---SCC--CSC--CTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCCCB----CTTTT
T ss_pred CCeEEEecCCCcc---ccC--ccC--CCCCeEEECCCCcCCEeC----hhhhccCCCCCEEECCCCcCCee----CHHHh
Confidence 6777888777663 223 112 257788888888777632 23456678888888888877752 25566
Q ss_pred hhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCccc
Q psy3611 119 KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHN 198 (472)
Q Consensus 119 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (472)
..+++|++|++++|.+..- +.
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l-------------------------------~~---------------------------- 117 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKEL-------------------------------PE---------------------------- 117 (330)
T ss_dssp TTCTTCCEEECCSSCCSBC-------------------------------CS----------------------------
T ss_pred cCCCCCCEEECCCCcCCcc-------------------------------Ch----------------------------
Confidence 7778888888888766420 00
Q ss_pred ccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHH
Q psy3611 199 ASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKA 278 (472)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 278 (472)
...+.|++|++++|.++......+. .+++|++|++++|.++..+.
T Consensus 118 -----------------------~~~~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~------ 162 (330)
T 1xku_A 118 -----------------------KMPKTLQELRVHENEITKVRKSVFN------GLNQMIVVELGTNPLKSSGI------ 162 (330)
T ss_dssp -----------------------SCCTTCCEEECCSSCCCBBCHHHHT------TCTTCCEEECCSSCCCGGGB------
T ss_pred -----------------------hhcccccEEECCCCcccccCHhHhc------CCccccEEECCCCcCCccCc------
Confidence 0015777888888877665544442 34678888888887754221
Q ss_pred HHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccC
Q psy3611 279 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLND 358 (472)
Q Consensus 279 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~ 358 (472)
.+..+..+++|+.|++++|.+.. ++..+ .++|++|++++|+++... +..+..+++|++|++++
T Consensus 163 ------~~~~~~~l~~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 163 ------ENGAFQGMKKLSYIRIADTNITT-----IPQGL--PPSLTELHLDGNKITKVD----AASLKGLNNLAKLGLSF 225 (330)
T ss_dssp ------CTTGGGGCTTCCEEECCSSCCCS-----CCSSC--CTTCSEEECTTSCCCEEC----TGGGTTCTTCCEEECCS
T ss_pred ------ChhhccCCCCcCEEECCCCcccc-----CCccc--cccCCEEECCCCcCCccC----HHHhcCCCCCCEEECCC
Confidence 11123345678888888887764 32221 367888888888877432 34566778888888888
Q ss_pred CCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHH--HhcCCccc
Q psy3611 359 NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA--MKNKTKLK 436 (472)
Q Consensus 359 n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~--l~~~~~L~ 436 (472)
|.++.... ..+..+++|++|++++|.+.. ++..+..+++|+.|++++|.++..+...+... ....+.++
T Consensus 226 n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~ 296 (330)
T 1xku_A 226 NSISAVDN----GSLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296 (330)
T ss_dssp SCCCEECT----TTGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS
T ss_pred CcCceeCh----hhccCCCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCCcCCccChhhcCCccccccccccc
Confidence 88774322 356677888888888888874 66667777888888888888776432111110 01235778
Q ss_pred EEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 437 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 437 ~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
.+++++|++..... ....+..++.++.++++++
T Consensus 297 ~l~l~~N~~~~~~i--~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 297 GVSLFSNPVQYWEI--QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp EEECCSSSSCGGGS--CGGGGTTCCCGGGEEC---
T ss_pred ceEeecCccccccc--CccccccccceeEEEeccc
Confidence 88888888764322 2245666788888888765
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.2e-23 Score=220.06 Aligned_cols=152 Identities=20% Similarity=0.237 Sum_probs=96.1
Q ss_pred CCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHH
Q psy3611 291 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 370 (472)
Q Consensus 291 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 370 (472)
.+++++.++++.|.+... .+..+..+++++.|++++|.+... ..+..+..+++|++|++++|.+.... +
T Consensus 443 ~l~~l~~l~ls~n~l~~~----~~~~~~~~~~L~~L~Ls~N~~~~~---~~~~~~~~l~~L~~L~Ls~N~L~~l~----~ 511 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLS----P 511 (635)
T ss_dssp TCTTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEEC----T
T ss_pred cccccccccccccccccc----cccccccchhhhhhhhhhcccccc---cCchhhhhccccCEEECCCCccCCcC----h
Confidence 344455555555555432 233445566777777777754321 12345666778888888888877321 2
Q ss_pred HHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcC-CcccEEEccCCCCChh-
Q psy3611 371 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSENQFGEE- 448 (472)
Q Consensus 371 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~l~~n~i~~~- 448 (472)
..+..+++|++|++++|.++.. .+..+..+++|+.|+|++|.+... .+..+..+ ++|++|++++|++...
T Consensus 512 ~~f~~l~~L~~L~Ls~N~l~~l----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSHNNFFSL----DTFPYKCLNSLQVLDYSLNHIMTS----KKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TTTTTCTTCCEEECTTSCCCBC----CCGGGTTCTTCCEEECTTSCCCBC----CSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred HHHcCCCCCCEEECCCCcCCCC----ChhHHhCCCCCCEEECCCCcCCCC----CHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 5567778888888888887753 234566778888888888887763 34556665 4788888888887643
Q ss_pred HHHHHHHHHHhCC
Q psy3611 449 GVEEMEKLMKSFG 461 (472)
Q Consensus 449 ~~~~l~~~l~~~~ 461 (472)
....+.++++...
T Consensus 584 ~~~~~~~wl~~~~ 596 (635)
T 4g8a_A 584 EHQSFLQWIKDQR 596 (635)
T ss_dssp GGHHHHHHHHHTT
T ss_pred CcHHHHHHHHhCC
Confidence 2345666666544
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=5.5e-22 Score=192.24 Aligned_cols=158 Identities=9% Similarity=0.115 Sum_probs=98.2
Q ss_pred CCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHH
Q psy3611 290 GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 369 (472)
Q Consensus 290 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l 369 (472)
+.+++|+.|++++|.+... .+..+..+++|++|++++|.++... ...+..+++|++|++++|.++......+
T Consensus 171 ~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHLILHMKQHILLL----EIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp TTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSCSTTHH----HHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred cCCCCCCEEECCCCCcCcc----CHHHHhccccCCeecCCCCccccch----hhhhhhcccccEEECCCCcccccccccc
Confidence 3345666666666666542 2344556666777777777665322 2233346677777777776664222111
Q ss_pred HHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHH-HhcCCcccEEEccCCCCChh
Q psy3611 370 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA-MKNKTKLKQINVSENQFGEE 448 (472)
Q Consensus 370 ~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~l~~n~i~~~ 448 (472)
......+.++.+++.++.+.+.+...++..+..+++|+.|++++|.++. ++.. +..+++|++|++++|++...
T Consensus 243 -~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-----i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 243 -STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-----VPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-----cCHHHHhcCCCCCEEEeeCCCccCc
Confidence 1223456777888888888877777777777888888888888888775 4544 36778888888888887654
Q ss_pred H--HHHHHHHHHhCC
Q psy3611 449 G--VEEMEKLMKSFG 461 (472)
Q Consensus 449 ~--~~~l~~~l~~~~ 461 (472)
. ...+..+++...
T Consensus 317 ~~~l~~l~~~~~~~~ 331 (353)
T 2z80_A 317 CPRIDYLSRWLNKNS 331 (353)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHhcc
Confidence 3 445556665544
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=3.2e-22 Score=192.05 Aligned_cols=295 Identities=17% Similarity=0.222 Sum_probs=213.1
Q ss_pred CccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHh
Q psy3611 11 TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90 (472)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l 90 (472)
+++.++++++.+.. +|..+ .+.+++|++++|.+... .+ ..+..+++|++|++++|.+++. .+..+
T Consensus 32 ~l~~l~~~~~~l~~-----lp~~~--~~~l~~L~L~~n~i~~~--~~--~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-----VPKDL--PPDTALLDLQNNKITEI--KD--GDFKNLKNLHTLILINNKISKI----SPGAF 96 (330)
T ss_dssp ETTEEECTTSCCCS-----CCCSC--CTTCCEEECCSSCCCCB--CT--TTTTTCTTCCEEECCSSCCCCB----CTTTT
T ss_pred CCeEEEecCCCccc-----cCccC--CCCCeEEECCCCcCCEe--Ch--hhhccCCCCCEEECCCCcCCee----CHHHh
Confidence 78999999988774 44333 37899999999998633 22 4678899999999999999864 35667
Q ss_pred hcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccc
Q psy3611 91 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQD 170 (472)
Q Consensus 91 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~ 170 (472)
..+++|++|++++|.++. ++..+ .++|++|++++|.+....+..
T Consensus 97 ~~l~~L~~L~Ls~n~l~~-----l~~~~--~~~L~~L~l~~n~l~~~~~~~----------------------------- 140 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKE-----LPEKM--PKTLQELRVHENEITKVRKSV----------------------------- 140 (330)
T ss_dssp TTCTTCCEEECCSSCCSB-----CCSSC--CTTCCEEECCSSCCCBBCHHH-----------------------------
T ss_pred cCCCCCCEEECCCCcCCc-----cChhh--cccccEEECCCCcccccCHhH-----------------------------
Confidence 788999999999999884 33333 279999999999887533221
Q ss_pred hhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhh--HHHHHHH
Q psy3611 171 EESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIG--VEGLADL 248 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~l~~~ 248 (472)
+..++.|++|++++|.+...+ ...+
T Consensus 141 --------------------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~--- 167 (330)
T 1xku_A 141 --------------------------------------------------FNGLNQMIVVELGTNPLKSSGIENGAF--- 167 (330)
T ss_dssp --------------------------------------------------HTTCTTCCEEECCSSCCCGGGBCTTGG---
T ss_pred --------------------------------------------------hcCCccccEEECCCCcCCccCcChhhc---
Confidence 223478999999999885422 1222
Q ss_pred HhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeC
Q psy3611 249 LRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEM 328 (472)
Q Consensus 249 l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l 328 (472)
..+++|++|++++|.++... ..+ .++|+.|++++|.+... .+..+..+++|++|++
T Consensus 168 ---~~l~~L~~L~l~~n~l~~l~---------------~~~--~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 168 ---QGMKKLSYIRIADTNITTIP---------------QGL--PPSLTELHLDGNKITKV----DAASLKGLNNLAKLGL 223 (330)
T ss_dssp ---GGCTTCCEEECCSSCCCSCC---------------SSC--CTTCSEEECTTSCCCEE----CTGGGTTCTTCCEEEC
T ss_pred ---cCCCCcCEEECCCCccccCC---------------ccc--cccCCEEECCCCcCCcc----CHHHhcCCCCCCEEEC
Confidence 24578999999999886321 111 26799999999998863 3456778899999999
Q ss_pred CCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHH--hhcCCC
Q psy3611 329 PQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY--LTDNTT 406 (472)
Q Consensus 329 ~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~--l~~~~~ 406 (472)
++|.++... +..+..+++|++|++++|.++. ++..+..+++|++|++++|.+++.+...+... ......
T Consensus 224 s~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~ 294 (330)
T 1xku_A 224 SFNSISAVD----NGSLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294 (330)
T ss_dssp CSSCCCEEC----TTTGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred CCCcCceeC----hhhccCCCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence 999987543 3467788999999999998873 34567788999999999999886432112110 012378
Q ss_pred CCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC
Q psy3611 407 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444 (472)
Q Consensus 407 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 444 (472)
++.+++++|.+....+ -+..+..++.++.+++++|+
T Consensus 295 l~~l~l~~N~~~~~~i--~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 295 YSGVSLFSNPVQYWEI--QPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSEEECCSSSSCGGGS--CGGGGTTCCCGGGEEC----
T ss_pred ccceEeecCccccccc--CccccccccceeEEEecccC
Confidence 8999999998865321 24567788899999999874
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.8e-21 Score=188.68 Aligned_cols=285 Identities=18% Similarity=0.193 Sum_probs=205.9
Q ss_pred hcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHH
Q psy3611 8 KLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87 (472)
Q Consensus 8 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~ 87 (472)
.|+.....+.+++.++. +|..+ .++|++|++++|.+... .+ ..+..+++|++|++++|.+++. .+
T Consensus 29 ~C~~~~~c~~~~~~l~~-----iP~~~--~~~L~~L~l~~n~i~~~--~~--~~~~~l~~L~~L~L~~n~l~~~----~~ 93 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNS-----IPSGL--TEAVKSLDLSNNRITYI--SN--SDLQRCVNLQALVLTSNGINTI----EE 93 (353)
T ss_dssp EECTTSEEECCSTTCSS-----CCTTC--CTTCCEEECTTSCCCEE--CT--TTTTTCTTCCEEECTTSCCCEE----CT
T ss_pred CCCCCeEeeCCCCCccc-----ccccc--cccCcEEECCCCcCccc--CH--HHhccCCCCCEEECCCCccCcc----CH
Confidence 47777778888887774 55544 36899999999998532 22 4678899999999999999874 34
Q ss_pred HHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcc
Q psy3611 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDE 167 (472)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~ 167 (472)
..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..-...
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~l~~~--------------------------- 142 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNL----SSSWFKPLSSLTFLNLLGNPYKTLGET--------------------------- 142 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSC----CHHHHTTCTTCSEEECTTCCCSSSCSS---------------------------
T ss_pred hhcCCCCCCCEEECCCCcCCcC----CHhHhCCCccCCEEECCCCCCcccCch---------------------------
Confidence 5567789999999999999862 234467889999999999987531000
Q ss_pred ccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCC-CChhhHHHHH
Q psy3611 168 EQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNA-FGPIGVEGLA 246 (472)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~ 246 (472)
..+..+++|++|++++|. ++......+
T Consensus 143 ---------------------------------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~- 170 (353)
T 2z80_A 143 ---------------------------------------------------SLFSHLTKLQILRVGNMDTFTKIQRKDF- 170 (353)
T ss_dssp ---------------------------------------------------CSCTTCTTCCEEEEEESSSCCEECTTTT-
T ss_pred ---------------------------------------------------hhhccCCCCcEEECCCCccccccCHHHc-
Confidence 012335788999998884 554433333
Q ss_pred HHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHH-HHhcCCCccE
Q psy3611 247 DLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAA-VFKKLKTLER 325 (472)
Q Consensus 247 ~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~~~~L~~ 325 (472)
..+++|++|++++|.++... +..++.+++|+.|++++|.+.. ++. .+..+++|+.
T Consensus 171 -----~~l~~L~~L~l~~n~l~~~~--------------~~~l~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~ 226 (353)
T 2z80_A 171 -----AGLTFLEELEIDASDLQSYE--------------PKSLKSIQNVSHLILHMKQHIL-----LLEIFVDVTSSVEC 226 (353)
T ss_dssp -----TTCCEEEEEEEEETTCCEEC--------------TTTTTTCSEEEEEEEECSCSTT-----HHHHHHHHTTTEEE
T ss_pred -----cCCCCCCEEECCCCCcCccC--------------HHHHhccccCCeecCCCCcccc-----chhhhhhhcccccE
Confidence 23578999999998886432 2334557889999999998864 333 3446889999
Q ss_pred EeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHH-hhcC
Q psy3611 326 VEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY-LTDN 404 (472)
Q Consensus 326 L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~-l~~~ 404 (472)
|++++|.++......+. .....+.++.++++++.+.+.+...+++.+..+++|+.|++++|.++. ++.. +..+
T Consensus 227 L~L~~n~l~~~~~~~l~-~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-----i~~~~~~~l 300 (353)
T 2z80_A 227 LELRDTDLDTFHFSELS-TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-----VPDGIFDRL 300 (353)
T ss_dssp EEEESCBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-----CCTTTTTTC
T ss_pred EECCCCccccccccccc-cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-----cCHHHHhcC
Confidence 99999988754322222 223467788999999998877777788888889999999999998885 5544 4778
Q ss_pred CCCCEEECcCCCCCch
Q psy3611 405 TTLEDVNLTCNEISVQ 420 (472)
Q Consensus 405 ~~L~~L~L~~n~i~~~ 420 (472)
++|+.|++++|.+..+
T Consensus 301 ~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 301 TSLQKIWLHTNPWDCS 316 (353)
T ss_dssp TTCCEEECCSSCBCCC
T ss_pred CCCCEEEeeCCCccCc
Confidence 9999999999987765
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=1.6e-22 Score=194.33 Aligned_cols=295 Identities=21% Similarity=0.225 Sum_probs=186.1
Q ss_pred CCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHh
Q psy3611 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM 118 (472)
Q Consensus 39 ~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l 118 (472)
+++.++++++.+. .+| ..+ .++|++|++++|.+++. .+..+..+++|++|++++|.++.. .+..+
T Consensus 34 ~l~~l~~~~~~l~---~ip--~~~--~~~l~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLK---AVP--KEI--SPDTTLLDLQNNDISEL----RKDDFKGLQHLYALVLVNNKISKI----HEKAF 98 (332)
T ss_dssp ETTEEECCSSCCS---SCC--SCC--CTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCEE----CGGGS
T ss_pred cCCEEECCCCCcc---ccC--CCC--CCCCeEEECCCCcCCcc----CHhHhhCCCCCcEEECCCCccCcc----CHhHh
Confidence 5777888777663 333 112 25778888888877753 234456677888888888877752 34566
Q ss_pred hhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCccc
Q psy3611 119 KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHN 198 (472)
Q Consensus 119 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (472)
..+++|++|++++|.+..- +.
T Consensus 99 ~~l~~L~~L~L~~n~l~~l-------------------------------~~---------------------------- 119 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEI-------------------------------PP---------------------------- 119 (332)
T ss_dssp TTCTTCCEEECCSSCCCSC-------------------------------CS----------------------------
T ss_pred hCcCCCCEEECCCCcCCcc-------------------------------Cc----------------------------
Confidence 7777888888887766420 00
Q ss_pred ccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHH
Q psy3611 199 ASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKA 278 (472)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 278 (472)
...++|++|++++|.++......+ ..+++|++|++++|.++..+.
T Consensus 120 -----------------------~~~~~L~~L~l~~n~i~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~------ 164 (332)
T 2ft3_A 120 -----------------------NLPSSLVELRIHDNRIRKVPKGVF------SGLRNMNCIEMGGNPLENSGF------ 164 (332)
T ss_dssp -----------------------SCCTTCCEEECCSSCCCCCCSGGG------SSCSSCCEEECCSCCCBGGGS------
T ss_pred -----------------------cccccCCEEECCCCccCccCHhHh------CCCccCCEEECCCCccccCCC------
Confidence 001477778887777754432222 235678888888877753221
Q ss_pred HHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccC
Q psy3611 279 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLND 358 (472)
Q Consensus 279 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~ 358 (472)
.+..+..+ +|+.|++++|.+.. ++..+ .++|++|++++|.++... +..+..+++|++|++++
T Consensus 165 ------~~~~~~~l-~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~i~~~~----~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 165 ------EPGAFDGL-KLNYLRISEAKLTG-----IPKDL--PETLNELHLDHNKIQAIE----LEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp ------CTTSSCSC-CCSCCBCCSSBCSS-----CCSSS--CSSCSCCBCCSSCCCCCC----TTSSTTCTTCSCCBCCS
T ss_pred ------CcccccCC-ccCEEECcCCCCCc-----cCccc--cCCCCEEECCCCcCCccC----HHHhcCCCCCCEEECCC
Confidence 11222333 67888888887764 33221 267888888888877432 34566778888888888
Q ss_pred CCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHH--hcCCccc
Q psy3611 359 NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM--KNKTKLK 436 (472)
Q Consensus 359 n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~L~ 436 (472)
|.++.... ..+..+++|++|++++|.++. ++..+..+++|+.|++++|.++..+...+.... ...+.|+
T Consensus 227 N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~ 297 (332)
T 2ft3_A 227 NQIRMIEN----GSLSFLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297 (332)
T ss_dssp SCCCCCCT----TGGGGCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBS
T ss_pred CcCCcCCh----hHhhCCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCccChhHcccccccccccccc
Confidence 88774221 356678888888888888874 666677788888888888888764321111100 1135688
Q ss_pred EEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 437 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 437 ~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
.|++++|++..... ...++..++.|+.++++++
T Consensus 298 ~L~l~~N~~~~~~~--~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 298 GISLFNNPVPYWEV--QPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp EEECCSSSSCGGGS--CGGGGTTBCCSTTEEC---
T ss_pred ceEeecCccccccc--Ccccccccchhhhhhcccc
Confidence 88888888763222 2245667888888888765
No 54
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1e-19 Score=174.89 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=53.3
Q ss_pred cceeEEEcCCC-CCChhhHHHHHHHHhcCC-CccEEeCCCC--CCChhHHHHHHHHHhcCCCccEEEccCCC-CCcccHH
Q psy3611 293 LALKVFIAGRN-RLENEGAKMLAAVFKKLK-TLERVEMPQN--GIYHVGITALSDAFEENKNLRHLNLNDNT-ITYKGAI 367 (472)
Q Consensus 293 ~~L~~L~l~~~-~l~~~~~~~l~~~~~~~~-~L~~L~l~~~--~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~ 367 (472)
++|+.|++++| .+++.+ ++..+..++ +|++|++++| .+++. .++..+..+++|++|++++|. +++.+.
T Consensus 168 ~~L~~L~l~~~~~l~~~~---~~~~~~~l~~~L~~L~l~~~~~~~~~~---~l~~~~~~~~~L~~L~l~~~~~l~~~~~- 240 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKH---VQVAVAHVSETITQLNLSGYRKNLQKS---DLSTLVRRCPNLVHLDLSDSVMLKNDCF- 240 (336)
T ss_dssp TTCCEEECCCCTTCCHHH---HHHHHHHSCTTCCEEECCSCGGGSCHH---HHHHHHHHCTTCSEEECTTCTTCCGGGG-
T ss_pred CCCCEEcCCCCCCcChHH---HHHHHHhcccCCCEEEeCCCcccCCHH---HHHHHHhhCCCCCEEeCCCCCcCCHHHH-
Confidence 34555555555 444331 333444455 5555555555 34332 223334445555555555555 433222
Q ss_pred HHHHHhcCCCCCcEEEcCCC-CCChHHHHHHHHHhhcCCCCCEEECcCCCCCchh
Q psy3611 368 PLGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG 421 (472)
Q Consensus 368 ~l~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 421 (472)
..+..+++|++|++++| .+.+.+. ..+..+++|+.|++++| +++.+
T Consensus 241 ---~~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~-i~~~~ 287 (336)
T 2ast_B 241 ---QEFFQLNYLQHLSLSRCYDIIPETL----LELGEIPTLKTLQVFGI-VPDGT 287 (336)
T ss_dssp ---GGGGGCTTCCEEECTTCTTCCGGGG----GGGGGCTTCCEEECTTS-SCTTC
T ss_pred ---HHHhCCCCCCEeeCCCCCCCCHHHH----HHHhcCCCCCEEeccCc-cCHHH
Confidence 23444555555555555 3333221 23344555555555555 44443
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=8e-22 Score=189.42 Aligned_cols=296 Identities=15% Similarity=0.178 Sum_probs=209.2
Q ss_pred CccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHh
Q psy3611 11 TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90 (472)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l 90 (472)
+++.++++++.+.. +|..+ .++|++|++++|.+. +..+ ..+..+++|++|++++|.+++. .+..+
T Consensus 34 ~l~~l~~~~~~l~~-----ip~~~--~~~l~~L~l~~n~i~--~~~~--~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-----VPKEI--SPDTTLLDLQNNDIS--ELRK--DDFKGLQHLYALVLVNNKISKI----HEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSS-----CCSCC--CTTCCEEECCSSCCC--EECT--TTTTTCTTCCEEECCSSCCCEE----CGGGS
T ss_pred cCCEEECCCCCccc-----cCCCC--CCCCeEEECCCCcCC--ccCH--hHhhCCCCCcEEECCCCccCcc----CHhHh
Confidence 69999999998774 44443 478999999999985 3333 5688999999999999999874 35667
Q ss_pred hcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccc
Q psy3611 91 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQD 170 (472)
Q Consensus 91 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~ 170 (472)
..+++|++|++++|.+.. ++..+. ++|++|++++|.+....+
T Consensus 99 ~~l~~L~~L~L~~n~l~~-----l~~~~~--~~L~~L~l~~n~i~~~~~------------------------------- 140 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVE-----IPPNLP--SSLVELRIHDNRIRKVPK------------------------------- 140 (332)
T ss_dssp TTCTTCCEEECCSSCCCS-----CCSSCC--TTCCEEECCSSCCCCCCS-------------------------------
T ss_pred hCcCCCCEEECCCCcCCc-----cCcccc--ccCCEEECCCCccCccCH-------------------------------
Confidence 788999999999999884 343332 799999999998763210
Q ss_pred hhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHh
Q psy3611 171 EESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLR 250 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~ 250 (472)
..+..+++|++|++++|.++..+... ..
T Consensus 141 ------------------------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~--~~-- 168 (332)
T 2ft3_A 141 ------------------------------------------------GVFSGLRNMNCIEMGGNPLENSGFEP--GA-- 168 (332)
T ss_dssp ------------------------------------------------GGGSSCSSCCEEECCSCCCBGGGSCT--TS--
T ss_pred ------------------------------------------------hHhCCCccCCEEECCCCccccCCCCc--cc--
Confidence 01234588999999999885422110 00
Q ss_pred ccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCC
Q psy3611 251 SSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ 330 (472)
Q Consensus 251 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~ 330 (472)
...+ +|++|++++|.++... ..+ .++|+.|++++|.+... .+..+..+++|+.|++++
T Consensus 169 ~~~l-~L~~L~l~~n~l~~l~---------------~~~--~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLTGIP---------------KDL--PETLNELHLDHNKIQAI----ELEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp SCSC-CCSCCBCCSSBCSSCC---------------SSS--CSSCSCCBCCSSCCCCC----CTTSSTTCTTCSCCBCCS
T ss_pred ccCC-ccCEEECcCCCCCccC---------------ccc--cCCCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCC
Confidence 1222 7889999998886421 111 25789999999988763 234567788999999999
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHh--hcCCCCC
Q psy3611 331 NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL--TDNTTLE 408 (472)
Q Consensus 331 ~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l--~~~~~L~ 408 (472)
|+++... +..+..+++|++|++++|.++. ++..+..+++|+.|++++|.+++.+...+.... .....|+
T Consensus 227 N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~ 297 (332)
T 2ft3_A 227 NQIRMIE----NGSLSFLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297 (332)
T ss_dssp SCCCCCC----TTGGGGCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBS
T ss_pred CcCCcCC----hhHhhCCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCccChhHcccccccccccccc
Confidence 9887432 3457788999999999998873 335577889999999999998864321111110 1136788
Q ss_pred EEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC
Q psy3611 409 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444 (472)
Q Consensus 409 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 444 (472)
.+++++|.+...++ .+.++..++.|+.+++++|+
T Consensus 298 ~L~l~~N~~~~~~~--~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 298 GISLFNNPVPYWEV--QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EEECCSSSSCGGGS--CGGGGTTBCCSTTEEC----
T ss_pred ceEeecCccccccc--Ccccccccchhhhhhccccc
Confidence 99999998773221 35667788899999998874
No 56
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=2e-19 Score=172.94 Aligned_cols=253 Identities=15% Similarity=0.241 Sum_probs=184.8
Q ss_pred CCCCeeeCCCCccCccchHHHHHHhccC--CCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHH
Q psy3611 38 KKLRHLNLNDNTITYKGAIPLGQALSKL--PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLV 115 (472)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~--~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 115 (472)
..++.++++++.+.. ..+..+ ++++.|++++|.+++.. ..+..+++|++|++++|.+++. .++
T Consensus 47 ~~~~~l~l~~~~~~~-------~~~~~~~~~~l~~L~l~~n~l~~~~-----~~~~~~~~L~~L~L~~~~l~~~---~~~ 111 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP-------DVTGRLLSQGVIAFRCPRSFMDQPL-----AEHFSPFRVQHMDLSNSVIEVS---TLH 111 (336)
T ss_dssp TTSSEEECTTCBCCH-------HHHHHHHHTTCSEEECTTCEECSCC-----CSCCCCBCCCEEECTTCEECHH---HHH
T ss_pred hhheeeccccccCCH-------HHHHhhhhccceEEEcCCccccccc-----hhhccCCCCCEEEccCCCcCHH---HHH
Confidence 458889999887741 233444 68899999998887642 2245678899999999988753 366
Q ss_pred HHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCC
Q psy3611 116 KAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNH 195 (472)
Q Consensus 116 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (472)
..+..+++|++|++++|.+++..+..+.
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~---------------------------------------------------- 139 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLA---------------------------------------------------- 139 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHT----------------------------------------------------
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHh----------------------------------------------------
Confidence 7778889999999999988765443222
Q ss_pred cccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCC-CCChhhHHHHHHHHhccCCCcceEEEeeCC-CCChhHHH
Q psy3611 196 SHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDN-AFGPIGVEGLADLLRSSCCFALEELKLNNN-GLGITGCK 273 (472)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~-~i~~~~~~ 273 (472)
.+++|++|++++| .+++.+...+.. .+++|++|++++| .+++.+..
T Consensus 140 ---------------------------~~~~L~~L~L~~~~~l~~~~l~~~~~-----~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 140 ---------------------------KNSNLVRLNLSGCSGFSEFALQTLLS-----SCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp ---------------------------TCTTCSEEECTTCBSCCHHHHHHHHH-----HCTTCCEEECCCCTTCCHHHHH
T ss_pred ---------------------------cCCCCCEEECCCCCCCCHHHHHHHHh-----cCCCCCEEcCCCCCCcChHHHH
Confidence 2478999999998 677665554433 3578999999999 88876544
Q ss_pred HHHHHHHhhcccCcCCCCCc-ceeEEEcCCC--CCChhhHHHHHHHHhcCCCccEEeCCCCC-CChhHHHHHHHHHhcCC
Q psy3611 274 LLSKALHDCYESSKKEGSPL-ALKVFIAGRN--RLENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDAFEENK 349 (472)
Q Consensus 274 ~l~~~l~~~~~~~~~~~~~~-~L~~L~l~~~--~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~ 349 (472)
.+.. . ++ +|+.|++++| .+.+. .++..+..+++|++|++++|. +++.+ ...+..++
T Consensus 188 ~~~~---~----------l~~~L~~L~l~~~~~~~~~~---~l~~~~~~~~~L~~L~l~~~~~l~~~~----~~~l~~l~ 247 (336)
T 2ast_B 188 VAVA---H----------VSETITQLNLSGYRKNLQKS---DLSTLVRRCPNLVHLDLSDSVMLKNDC----FQEFFQLN 247 (336)
T ss_dssp HHHH---H----------SCTTCCEEECCSCGGGSCHH---HHHHHHHHCTTCSEEECTTCTTCCGGG----GGGGGGCT
T ss_pred HHHH---h----------cccCCCEEEeCCCcccCCHH---HHHHHHhhCCCCCEEeCCCCCcCCHHH----HHHHhCCC
Confidence 4332 2 46 8999999999 56644 466677889999999999998 77654 34667889
Q ss_pred CccEEEccCC-CCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCch
Q psy3611 350 NLRHLNLNDN-TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 420 (472)
Q Consensus 350 ~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 420 (472)
+|++|++++| .+.+.+. ..+..+++|+.|++++| +++.+...+.. .++.|++++|.++..
T Consensus 248 ~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~-i~~~~~~~l~~------~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETL----LELGEIPTLKTLQVFGI-VPDGTLQLLKE------ALPHLQINCSHFTTI 308 (336)
T ss_dssp TCCEEECTTCTTCCGGGG----GGGGGCTTCCEEECTTS-SCTTCHHHHHH------HSTTSEESCCCSCCT
T ss_pred CCCEeeCCCCCCCCHHHH----HHHhcCCCCCEEeccCc-cCHHHHHHHHh------hCcceEEecccCccc
Confidence 9999999999 5555443 45677999999999999 77766544442 355566888888874
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=2.1e-21 Score=202.89 Aligned_cols=430 Identities=19% Similarity=0.168 Sum_probs=243.5
Q ss_pred HHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
.+|.++++|++|+|++|.|+.- .+.+|.++++|++|+|++|.+. +..+ .+|..+++|++|++++|.+++.
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i----~~~~f~~L~~L~~L~Ls~N~l~--~l~~--~~f~~L~~L~~L~Ls~N~l~~l-- 139 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTI----EDGAYQSLSHLSTLILTGNPIQ--SLAL--GAFSGLSSLQKLVAVETNLASL-- 139 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCC--EECG--GGGTTCTTCCEEECTTSCCCCS--
T ss_pred HHHhCCCCCCEEECCCCcCCCc----ChhHhcCCCCCCEEEccCCcCC--CCCH--HHhcCCCCCCEEECCCCcCCCC--
Confidence 5789999999999999998852 2456889999999999999985 3333 5688999999999999999863
Q ss_pred HHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhh---HHhhhccC
Q psy3611 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA---AALVLEDD 160 (472)
Q Consensus 84 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l---~~L~~~~~ 160 (472)
-+..++.+++|++|++++|.+... .++..+..+++|++|++++|.+....+..+... ...+.. ..+..+..
T Consensus 140 --~~~~~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L-~~l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 140 --ENFPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPM 213 (635)
T ss_dssp --TTCCCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCCEEECTTCCC
T ss_pred --ChhhhhcCcccCeeccccCccccC---CCchhhccchhhhhhcccCccccccccccccch-hhhhhhhhhhhcccCcc
Confidence 223467889999999999998753 245667788999999999998876554444332 211111 00111100
Q ss_pred CC-------------------CCCccccch-----hhhcc--cCCccccCCCccCCCCCCCcc-----------------
Q psy3611 161 EG-------------------ECSDEEQDE-----ESEEE--NDSDAEGDNSNLSHNDSNHSH----------------- 197 (472)
Q Consensus 161 ~~-------------------~~~~~i~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~----------------- 197 (472)
.. .....+... ...+. ...........+.........
T Consensus 214 ~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~ 293 (635)
T 4g8a_A 214 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 293 (635)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred cccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcc
Confidence 00 000000000 00000 000000000000000000000
Q ss_pred --ccc---ccccCCCCccc--ccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHH-------------HHHhccCCCcc
Q psy3611 198 --NAS---NQSHNNSNQSH--NTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLA-------------DLLRSSCCFAL 257 (472)
Q Consensus 198 --~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-------------~~l~~~~~~~L 257 (472)
... .....+..... .........+.....++.|++.++.+.......+. .......+++|
T Consensus 294 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L 373 (635)
T 4g8a_A 294 YLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 373 (635)
T ss_dssp CEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTC
T ss_pred cccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccccc
Confidence 000 00000000000 00000000111122333333333221110000000 00000123455
Q ss_pred eEEEeeCCCCChhHHHHHHH-HHHh----------hcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEE
Q psy3611 258 EELKLNNNGLGITGCKLLSK-ALHD----------CYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 326 (472)
Q Consensus 258 ~~L~l~~~~i~~~~~~~l~~-~l~~----------~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L 326 (472)
+.|+++.|.+...+...... .+.. .......+..+++|+.+++..+..... .-...+..+.+++.+
T Consensus 374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~---~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM---SEFSVFLSLRNLIYL 450 (635)
T ss_dssp CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEEST---TSSCTTTTCTTCCEE
T ss_pred ccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccc---ccccccccccccccc
Confidence 55555555543211100000 0000 001123445567888899887765432 012245678899999
Q ss_pred eCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCC
Q psy3611 327 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 406 (472)
Q Consensus 327 ~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~ 406 (472)
+++.|.+.... +..+..++.++.|++++|.+.. +. .++.+..+++|+.|++++|.+.+. .+.++..+++
T Consensus 451 ~ls~n~l~~~~----~~~~~~~~~L~~L~Ls~N~~~~-~~--~~~~~~~l~~L~~L~Ls~N~L~~l----~~~~f~~l~~ 519 (635)
T 4g8a_A 451 DISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQE-NF--LPDIFTELRNLTFLDLSQCQLEQL----SPTAFNSLSS 519 (635)
T ss_dssp ECTTSCCEECC----TTTTTTCTTCCEEECTTCEEGG-GE--ECSCCTTCTTCCEEECTTSCCCEE----CTTTTTTCTT
T ss_pred ccccccccccc----ccccccchhhhhhhhhhccccc-cc--CchhhhhccccCEEECCCCccCCc----ChHHHcCCCC
Confidence 99999886432 4456678899999999997542 11 225677889999999999999874 4577888999
Q ss_pred CCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhC-CceeEEecCCC
Q psy3611 407 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF-GMAAALVLEDD 471 (472)
Q Consensus 407 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~-~~L~~L~l~~~ 471 (472)
|+.|+|++|.|+.. .+..+..+++|++|++++|+++..... .+..+ ++|+.|++++|
T Consensus 520 L~~L~Ls~N~l~~l----~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 520 LQVLNMSHNNFFSL----DTFPYKCLNSLQVLDYSLNHIMTSKKQ----ELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp CCEEECTTSCCCBC----CCGGGTTCTTCCEEECTTSCCCBCCSS----CTTCCCTTCCEEECTTC
T ss_pred CCEEECCCCcCCCC----ChhHHhCCCCCCEEECCCCcCCCCCHH----HHHhhhCcCCEEEeeCC
Confidence 99999999999874 355678899999999999998764333 34445 57999999986
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=1.4e-20 Score=188.20 Aligned_cols=294 Identities=16% Similarity=0.129 Sum_probs=213.3
Q ss_pred hhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHH
Q psy3611 33 AFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGL 112 (472)
Q Consensus 33 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~ 112 (472)
.+..+++|++|++++|.+... + .+..+++|++|++++|.+++. + ++.+++|++|++++|.++..
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~---~---~l~~l~~L~~L~Ls~n~l~~~-----~--~~~l~~L~~L~Ls~N~l~~~--- 100 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM---T---GIEKLTGLTKLICTSNNITTL-----D--LSQNTNLTYLACDSNKLTNL--- 100 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC---T---TGGGCTTCSEEECCSSCCSCC-----C--CTTCTTCSEEECCSSCCSCC---
T ss_pred ChhHcCCCCEEEccCCCcccC---h---hhcccCCCCEEEccCCcCCeE-----c--cccCCCCCEEECcCCCCcee---
Confidence 355678999999999998632 3 478899999999999999874 2 67789999999999999873
Q ss_pred HHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCC
Q psy3611 113 DLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHND 192 (472)
Q Consensus 113 ~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 192 (472)
+ +..+++|++|++++|.+.... +..++.|+.|.+....-. .
T Consensus 101 --~--~~~l~~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N~l~--------------------------~-- 141 (457)
T 3bz5_A 101 --D--VTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNTLT--------------------------E-- 141 (457)
T ss_dssp --C--CTTCTTCCEEECCSSCCSCCC-------CTTCTTCCEEECTTSCCS--------------------------C--
T ss_pred --e--cCCCCcCCEEECCCCcCCeec-------CCCCCcCCEEECCCCccc--------------------------e--
Confidence 2 678899999999999887521 233455544433221100 0
Q ss_pred CCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCC-ChhhHHHHHHHHhccCCCcceEEEeeCCCCChhH
Q psy3611 193 SNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNGLGITG 271 (472)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~ 271 (472)
. .+..+++|++|++++|.. +... ...+++|++|++++|.++...
T Consensus 142 --------------------l------~l~~l~~L~~L~l~~n~~~~~~~---------~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 142 --------------------I------DVSHNTQLTELDCHLNKKITKLD---------VTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp --------------------C------CCTTCTTCCEEECTTCSCCCCCC---------CTTCTTCCEEECCSSCCCCCC
T ss_pred --------------------e------ccccCCcCCEEECCCCCcccccc---------cccCCcCCEEECCCCccceec
Confidence 0 134568999999999954 4331 234678999999999987421
Q ss_pred HHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCc
Q psy3611 272 CKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 351 (472)
Q Consensus 272 ~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L 351 (472)
++.+++|+.|++++|.+.+. .+..+++|+.|++++|+++. ++ +..+++|
T Consensus 187 -----------------l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~-----ip--~~~l~~L 235 (457)
T 3bz5_A 187 -----------------VSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTE-----ID--VTPLTQL 235 (457)
T ss_dssp -----------------CTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSC-----CC--CTTCTTC
T ss_pred -----------------cccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccc-----cC--ccccCCC
Confidence 34578999999999999863 26678999999999999984 22 6688999
Q ss_pred cEEEccCCCCCcccHHHHHHHhcCCCCCcEEE----------cCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchh
Q psy3611 352 RHLNLNDNTITYKGAIPLGQALSKLPSLAILN----------LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG 421 (472)
Q Consensus 352 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~----------l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 421 (472)
+.|++++|.++... +..+++|+.|+ +++|.+.+. ++ ...+++|+.|++++|.....
T Consensus 236 ~~L~l~~N~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~----~~--~~~l~~L~~L~Ls~n~~l~~- 301 (457)
T 3bz5_A 236 TYFDCSVNPLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIY----FQ--AEGCRKIKELDVTHNTQLYL- 301 (457)
T ss_dssp SEEECCSSCCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCE----EE--CTTCTTCCCCCCTTCTTCCE-
T ss_pred CEEEeeCCcCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCc----cc--ccccccCCEEECCCCcccce-
Confidence 99999999988421 23455555554 444443322 22 34568999999999863221
Q ss_pred HHHHHH--------HHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 422 GLDLVK--------AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 422 ~~~l~~--------~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
++. .+..+++|++|++++|++++. -+..+++|+.|+++++
T Consensus 302 ---l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-------~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 302 ---LDCQAAGITELDLSQNPKLVYLYLNNTELTEL-------DVSHNTKLKSLSCVNA 349 (457)
T ss_dssp ---EECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-------CCTTCTTCSEEECCSS
T ss_pred ---eccCCCcceEechhhcccCCEEECCCCccccc-------ccccCCcCcEEECCCC
Confidence 111 256788999999999999763 1667999999999886
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=1.2e-22 Score=193.45 Aligned_cols=128 Identities=20% Similarity=0.294 Sum_probs=84.2
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHh
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l 373 (472)
+|+.|++++|.+.+. ++..+..+. |+.|++++|.+... .+..+..+++|+.|++++|.++... ..+
T Consensus 175 ~L~~L~L~~N~l~~~----~~~~~~~l~-L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~ 240 (313)
T 1ogq_A 175 LFTSMTISRNRLTGK----IPPTFANLN-LAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFDL-----GKV 240 (313)
T ss_dssp TCCEEECCSSEEEEE----CCGGGGGCC-CSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCBG-----GGC
T ss_pred cCcEEECcCCeeecc----CChHHhCCc-ccEEECcCCcccCc----CCHHHhcCCCCCEEECCCCceeeec-----Ccc
Confidence 566666666666542 344445554 77777777776532 2455666777888888887776211 225
Q ss_pred cCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC
Q psy3611 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444 (472)
Q Consensus 374 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 444 (472)
..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+... ++.. ..+++|+.+++++|+
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGT----LPQGLTQLKFLHSLNVSFNNLCGE----IPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCCTTCCEEECCSSCCEEC----CCGGGGGCTTCCEEECCSSEEEEE----CCCS-TTGGGSCGGGTCSSS
T ss_pred cccCCCCEEECcCCcccCc----CChHHhcCcCCCEEECcCCccccc----CCCC-ccccccChHHhcCCC
Confidence 5667788888888877643 566677778888888888877643 3443 566777777887776
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=1.4e-21 Score=186.35 Aligned_cols=259 Identities=15% Similarity=0.213 Sum_probs=142.7
Q ss_pred ccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhh
Q psy3611 12 LEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 91 (472)
Q Consensus 12 L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~ 91 (472)
++..+++.+.+.. .+...+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.+++.. + +.
T Consensus 12 l~i~~ls~~~l~~----~~~~~~~~~~~L~~L~L~~n~l~--~~~~--~~~~~l~~L~~L~Ls~n~l~~~~----~--~~ 77 (317)
T 3o53_A 12 YKIEKVTDSSLKQ----ALASLRQSAWNVKELDLSGNPLS--QISA--ADLAPFTKLELLNLSSNVLYETL----D--LE 77 (317)
T ss_dssp EEEESCCTTTHHH----HHHHHHTTGGGCSEEECTTSCCC--CCCH--HHHTTCTTCCEEECTTSCCEEEE----E--ET
T ss_pred eeEeeccccchhh----hHHHHhccCCCCCEEECcCCccC--cCCH--HHhhCCCcCCEEECCCCcCCcch----h--hh
Confidence 4445555555443 34444556678888888888775 3333 46777788888888888776532 1 56
Q ss_pred cCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccch
Q psy3611 92 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDE 171 (472)
Q Consensus 92 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~ 171 (472)
.+++|++|++++|.++.. ...++|++|++++|.+.... .
T Consensus 78 ~l~~L~~L~Ls~n~l~~l---------~~~~~L~~L~l~~n~l~~~~-------------------------------~- 116 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRVS-------------------------------C- 116 (317)
T ss_dssp TCTTCCEEECCSSEEEEE---------EECTTCCEEECCSSCCSEEE-------------------------------E-
T ss_pred hcCCCCEEECcCCccccc---------cCCCCcCEEECCCCccCCcC-------------------------------c-
Confidence 677888888888877642 13367788888777665310 0
Q ss_pred hhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhc
Q psy3611 172 ESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRS 251 (472)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~ 251 (472)
..++.|++|++++|.++......+.
T Consensus 117 --------------------------------------------------~~~~~L~~L~l~~N~l~~~~~~~~~----- 141 (317)
T 3o53_A 117 --------------------------------------------------SRGQGKKNIYLANNKITMLRDLDEG----- 141 (317)
T ss_dssp --------------------------------------------------CCCSSCEEEECCSSCCCSGGGBCTG-----
T ss_pred --------------------------------------------------cccCCCCEEECCCCCCCCccchhhh-----
Confidence 0125677777777777543322221
Q ss_pred cCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCC
Q psy3611 252 SCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQN 331 (472)
Q Consensus 252 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~ 331 (472)
.+++|++|++++|.++......+. ..+++|+.|++++|.+... + ....+++|++|++++|
T Consensus 142 -~l~~L~~L~Ls~N~l~~~~~~~~~-------------~~l~~L~~L~L~~N~l~~~-----~-~~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 142 -CRSRVQYLDLKLNEIDTVNFAELA-------------ASSDTLEHLNLQYNFIYDV-----K-GQVVFAKLKTLDLSSN 201 (317)
T ss_dssp -GGSSEEEEECTTSCCCEEEGGGGG-------------GGTTTCCEEECTTSCCCEE-----E-CCCCCTTCCEEECCSS
T ss_pred -ccCCCCEEECCCCCCCcccHHHHh-------------hccCcCCEEECCCCcCccc-----c-cccccccCCEEECCCC
Confidence 234677777777666543211110 1134566666666665532 1 1113455666666666
Q ss_pred CCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEE
Q psy3611 332 GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVN 411 (472)
Q Consensus 332 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~ 411 (472)
+++.. +..+..+++|++|++++|.++. ++..+..+++|+.|++++|.+.... ++..+..++.|+.++
T Consensus 202 ~l~~l-----~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~l~~L~~L~l~~N~~~~~~---~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 202 KLAFM-----GPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLRGNGFHCGT---LRDFFSKNQRVQTVA 268 (317)
T ss_dssp CCCEE-----CGGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECTTCCCBHHH---HHHHHHTCHHHHHHH
T ss_pred cCCcc-----hhhhcccCcccEEECcCCcccc-----hhhHhhcCCCCCEEEccCCCccCcC---HHHHHhccccceEEE
Confidence 55522 2224455556666666665552 2233445555566666655555211 344444455555555
Q ss_pred Cc
Q psy3611 412 LT 413 (472)
Q Consensus 412 L~ 413 (472)
++
T Consensus 269 l~ 270 (317)
T 3o53_A 269 KQ 270 (317)
T ss_dssp HH
T ss_pred CC
Confidence 44
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=3e-22 Score=200.22 Aligned_cols=156 Identities=24% Similarity=0.243 Sum_probs=92.9
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
++|++|++++|.+.... .+ ..+++|++|++++|.++... ..+++|+.|++++|.
T Consensus 215 ~~L~~L~l~~n~l~~lp--~~------~~l~~L~~L~l~~N~l~~l~------------------~~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 215 LSLESIVAGNNILEELP--EL------QNLPFLTTIYADNNLLKTLP------------------DLPPSLEALNVRDNY 268 (454)
T ss_dssp TTCCEEECCSSCCSSCC--CC------TTCTTCCEEECCSSCCSSCC------------------SCCTTCCEEECCSSC
T ss_pred CcccEEECcCCcCCccc--cc------CCCCCCCEEECCCCcCCccc------------------ccccccCEEECCCCc
Confidence 35666666666654221 11 23456667777666664210 012467777777776
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCC-CCCcEEE
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL-PSLAILN 383 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~ 383 (472)
+.. ++. ..++|+.|++++|+++... . -.++|++|++++|.++. +... ++|+.|+
T Consensus 269 l~~-----l~~---~~~~L~~L~ls~N~l~~l~-----~---~~~~L~~L~l~~N~l~~---------i~~~~~~L~~L~ 323 (454)
T 1jl5_A 269 LTD-----LPE---LPQSLTFLDVSENIFSGLS-----E---LPPNLYYLNASSNEIRS---------LCDLPPSLEELN 323 (454)
T ss_dssp CSC-----CCC---CCTTCCEEECCSSCCSEES-----C---CCTTCCEEECCSSCCSE---------ECCCCTTCCEEE
T ss_pred ccc-----cCc---ccCcCCEEECcCCccCccc-----C---cCCcCCEEECcCCcCCc---------ccCCcCcCCEEE
Confidence 664 222 2356777777777766311 0 11467777777777662 1122 4788888
Q ss_pred cCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 384 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 384 l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
+++|.+.+ ++. .+++|+.|++++|.++. ++. .+++|++|++++|+++.
T Consensus 324 Ls~N~l~~-----lp~---~~~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 324 VSNNKLIE-----LPA---LPPRLERLIASFNHLAE-----VPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCSSCCSC-----CCC---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSS
T ss_pred CCCCcccc-----ccc---cCCcCCEEECCCCcccc-----ccc---hhhhccEEECCCCCCCc
Confidence 88887764 332 24778888888887775 344 45788888888887765
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=1.3e-21 Score=186.65 Aligned_cols=260 Identities=18% Similarity=0.231 Sum_probs=170.7
Q ss_pred CCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHh
Q psy3611 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM 118 (472)
Q Consensus 39 ~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l 118 (472)
.++..+++.+.+. .... ..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++.. . +
T Consensus 11 ~l~i~~ls~~~l~--~~~~--~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~-----~-~ 76 (317)
T 3o53_A 11 RYKIEKVTDSSLK--QALA--SLRQSAWNVKELDLSGNPLSQI----SAADLAPFTKLELLNLSSNVLYETL-----D-L 76 (317)
T ss_dssp EEEEESCCTTTHH--HHHH--HHHTTGGGCSEEECTTSCCCCC----CHHHHTTCTTCCEEECTTSCCEEEE-----E-E
T ss_pred ceeEeeccccchh--hhHH--HHhccCCCCCEEECcCCccCcC----CHHHhhCCCcCCEEECCCCcCCcch-----h-h
Confidence 4566667666652 2222 4566677899999999988874 3455677888999999999887531 1 6
Q ss_pred hhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCccc
Q psy3611 119 KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHN 198 (472)
Q Consensus 119 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (472)
..+++|++|++++|.++..
T Consensus 77 ~~l~~L~~L~Ls~n~l~~l------------------------------------------------------------- 95 (317)
T 3o53_A 77 ESLSTLRTLDLNNNYVQEL------------------------------------------------------------- 95 (317)
T ss_dssp TTCTTCCEEECCSSEEEEE-------------------------------------------------------------
T ss_pred hhcCCCCEEECcCCccccc-------------------------------------------------------------
Confidence 7788899999988876531
Q ss_pred ccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHH
Q psy3611 199 ASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKA 278 (472)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 278 (472)
...+.|++|++++|.++..... .+++|++|++++|.++.....
T Consensus 96 -----------------------~~~~~L~~L~l~~n~l~~~~~~---------~~~~L~~L~l~~N~l~~~~~~----- 138 (317)
T 3o53_A 96 -----------------------LVGPSIETLHAANNNISRVSCS---------RGQGKKNIYLANNKITMLRDL----- 138 (317)
T ss_dssp -----------------------EECTTCCEEECCSSCCSEEEEC---------CCSSCEEEECCSSCCCSGGGB-----
T ss_pred -----------------------cCCCCcCEEECCCCccCCcCcc---------ccCCCCEEECCCCCCCCccch-----
Confidence 0126888888888888654321 235788888888887643211
Q ss_pred HHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHH-hcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEcc
Q psy3611 279 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVF-KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN 357 (472)
Q Consensus 279 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~ 357 (472)
.++.+++|+.|++++|.+.... +..+ ..+++|++|++++|.++.. .....+++|++|+++
T Consensus 139 ---------~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~L~~N~l~~~------~~~~~l~~L~~L~Ls 199 (317)
T 3o53_A 139 ---------DEGCRSRVQYLDLKLNEIDTVN----FAELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLS 199 (317)
T ss_dssp ---------CTGGGSSEEEEECTTSCCCEEE----GGGGGGGTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECC
T ss_pred ---------hhhccCCCCEEECCCCCCCccc----HHHHhhccCcCCEEECCCCcCccc------ccccccccCCEEECC
Confidence 1233567888888888777531 2222 3567788888887777633 112236777777777
Q ss_pred CCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccE
Q psy3611 358 DNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 437 (472)
Q Consensus 358 ~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 437 (472)
+|.++.. +..+..+++|+.|++++|.++. ++..+..+++|+.|++++|.+... .++..+..++.|+.
T Consensus 200 ~N~l~~l-----~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 200 SNKLAFM-----GPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQT 266 (317)
T ss_dssp SSCCCEE-----CGGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHH
T ss_pred CCcCCcc-----hhhhcccCcccEEECcCCcccc-----hhhHhhcCCCCCEEEccCCCccCc---CHHHHHhccccceE
Confidence 7777632 1235566777777777777774 555566667777777777777632 25666666677776
Q ss_pred EEccC
Q psy3611 438 INVSE 442 (472)
Q Consensus 438 L~l~~ 442 (472)
+++.+
T Consensus 267 l~l~~ 271 (317)
T 3o53_A 267 VAKQT 271 (317)
T ss_dssp HHHHH
T ss_pred EECCC
Confidence 66653
No 63
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=1.2e-22 Score=193.26 Aligned_cols=251 Identities=20% Similarity=0.207 Sum_probs=171.7
Q ss_pred CCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccC-ccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHH
Q psy3611 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD-CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 116 (472)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~-~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 116 (472)
..+++|++++|.+.....++ ..+..+++|++|++++ |.+.+ .++..++.+++|++|++++|.++. .++.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~--~~l~~l~~L~~L~L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP--SSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSG----AIPD 119 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC--GGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEE----ECCG
T ss_pred ceEEEEECCCCCccCCcccC--hhHhCCCCCCeeeCCCCCcccc----cCChhHhcCCCCCEEECcCCeeCC----cCCH
Confidence 46777888888775211445 5677788888888884 66665 255666777888888888887774 2556
Q ss_pred HhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCc
Q psy3611 117 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHS 196 (472)
Q Consensus 117 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (472)
.+..+++|++|++++|.+.+..+.
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~-------------------------------------------------------- 143 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPP-------------------------------------------------------- 143 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCG--------------------------------------------------------
T ss_pred HHhCCCCCCEEeCCCCccCCcCCh--------------------------------------------------------
Confidence 677778888888888766532111
Q ss_pred ccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCC-cceEEEeeCCCCChhHHHHH
Q psy3611 197 HNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCF-ALEELKLNNNGLGITGCKLL 275 (472)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~-~L~~L~l~~~~i~~~~~~~l 275 (472)
.+..+++|++|++++|.++......+. .++ +|++|++++|.++....
T Consensus 144 -----------------------~~~~l~~L~~L~L~~N~l~~~~p~~l~------~l~~~L~~L~L~~N~l~~~~~--- 191 (313)
T 1ogq_A 144 -----------------------SISSLPNLVGITFDGNRISGAIPDSYG------SFSKLFTSMTISRNRLTGKIP--- 191 (313)
T ss_dssp -----------------------GGGGCTTCCEEECCSSCCEEECCGGGG------CCCTTCCEEECCSSEEEEECC---
T ss_pred -----------------------HHhcCCCCCeEECcCCcccCcCCHHHh------hhhhcCcEEECcCCeeeccCC---
Confidence 122347788888888887533333332 234 78888888887653211
Q ss_pred HHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEE
Q psy3611 276 SKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLN 355 (472)
Q Consensus 276 ~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~ 355 (472)
..++.+. |+.|++++|.+.+. .+..+..+++|+.|++++|.++.. ...+..+++|++|+
T Consensus 192 -----------~~~~~l~-L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~l~~L~~L~ 250 (313)
T 1ogq_A 192 -----------PTFANLN-LAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFD-----LGKVGLSKNLNGLD 250 (313)
T ss_dssp -----------GGGGGCC-CSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCB-----GGGCCCCTTCCEEE
T ss_pred -----------hHHhCCc-ccEEECcCCcccCc----CCHHHhcCCCCCEEECCCCceeee-----cCcccccCCCCEEE
Confidence 1122233 88888888887753 555677888999999999988632 12356778999999
Q ss_pred ccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCC
Q psy3611 356 LNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE 416 (472)
Q Consensus 356 l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 416 (472)
+++|.++.. ++..+..+++|+.|++++|.+++. ++.. ..+++|+.+++++|.
T Consensus 251 Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 251 LRNNRIYGT----LPQGLTQLKFLHSLNVSFNNLCGE----IPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCSSCCEEC----CCGGGGGCTTCCEEECCSSEEEEE----CCCS-TTGGGSCGGGTCSSS
T ss_pred CcCCcccCc----CChHHhcCcCCCEEECcCCccccc----CCCC-ccccccChHHhcCCC
Confidence 999988732 336677889999999999988754 4443 566888999998886
No 64
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.80 E-value=1e-18 Score=152.60 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=132.0
Q ss_pred HHHHHHHhcCCCccEEeCCCC-CCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCC
Q psy3611 311 KMLAAVFKKLKTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 389 (472)
Q Consensus 311 ~~l~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i 389 (472)
+.+...+..+++|++|++++| .+++.|+..+++++..+++|++|++++|.++++|+..+++.+...+.|++|++++|.|
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 356777788889999999998 9999999899999988999999999999999888888888888888999999999999
Q ss_pred ChHHHHHHHHHhhcCCCCCEEEC--cCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCcee
Q psy3611 390 KSAGASSIAKYLTDNTTLEDVNL--TCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 464 (472)
Q Consensus 390 ~~~~~~~l~~~l~~~~~L~~L~L--~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~ 464 (472)
++.|+..++.++..+++|+.|+| ++|.|+++|+..+...+..+++|++|++++|.++..+. +.++++.+..++
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~--i~~~L~~N~~l~ 180 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNNDLV 180 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHH--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHH--HHHHHHhhHHHh
Confidence 99999889999999999999999 88999999999999999999999999999998877663 667776665543
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=2.6e-19 Score=184.61 Aligned_cols=267 Identities=19% Similarity=0.213 Sum_probs=169.6
Q ss_pred CccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHh
Q psy3611 11 TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90 (472)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l 90 (472)
+++.|++++|.++. +|..+. ++|++|++++|.+. .++ . .+++|++|++++|.+++ ++.
T Consensus 41 ~l~~L~ls~n~L~~-----lp~~l~--~~L~~L~L~~N~l~---~lp--~---~l~~L~~L~Ls~N~l~~-----lp~-- 98 (622)
T 3g06_A 41 GNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLT---SLP--A---LPPELRTLEVSGNQLTS-----LPV-- 98 (622)
T ss_dssp CCCEEECCSSCCSC-----CCSCCC--TTCSEEEECSCCCS---CCC--C---CCTTCCEEEECSCCCSC-----CCC--
T ss_pred CCcEEEecCCCcCc-----cChhhC--CCCcEEEecCCCCC---CCC--C---cCCCCCEEEcCCCcCCc-----CCC--
Confidence 46777777776663 344332 57777777777664 222 1 35677777777777664 222
Q ss_pred hcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccc
Q psy3611 91 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQD 170 (472)
Q Consensus 91 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~ 170 (472)
.+++|++|++++|.++. ++. ..++|+.|++++|.++.- +.
T Consensus 99 -~l~~L~~L~Ls~N~l~~-----l~~---~l~~L~~L~L~~N~l~~l-------------------------------p~ 138 (622)
T 3g06_A 99 -LPPGLLELSIFSNPLTH-----LPA---LPSGLCKLWIFGNQLTSL-------------------------------PV 138 (622)
T ss_dssp -CCTTCCEEEECSCCCCC-----CCC---CCTTCCEEECCSSCCSCC-------------------------------CC
T ss_pred -CCCCCCEEECcCCcCCC-----CCC---CCCCcCEEECCCCCCCcC-------------------------------CC
Confidence 35677777777777664 222 346677777777665420 00
Q ss_pred hhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHh
Q psy3611 171 EESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLR 250 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~ 250 (472)
..++|++|++++|.++...
T Consensus 139 ----------------------------------------------------~l~~L~~L~Ls~N~l~~l~--------- 157 (622)
T 3g06_A 139 ----------------------------------------------------LPPGLQELSVSDNQLASLP--------- 157 (622)
T ss_dssp ----------------------------------------------------CCTTCCEEECCSSCCSCCC---------
T ss_pred ----------------------------------------------------CCCCCCEEECcCCcCCCcC---------
Confidence 1257788888888775422
Q ss_pred ccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCC
Q psy3611 251 SSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ 330 (472)
Q Consensus 251 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~ 330 (472)
...++|+.|++++|.++... ..+++|+.|++++|.+.. ++. ..++|+.|++++
T Consensus 158 -~~~~~L~~L~L~~N~l~~l~------------------~~~~~L~~L~Ls~N~l~~-----l~~---~~~~L~~L~L~~ 210 (622)
T 3g06_A 158 -ALPSELCKLWAYNNQLTSLP------------------MLPSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYN 210 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCC------------------CCCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCS
T ss_pred -CccCCCCEEECCCCCCCCCc------------------ccCCCCcEEECCCCCCCC-----CCC---ccchhhEEECcC
Confidence 01246788888887775321 124678888888887764 222 246788888888
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEE
Q psy3611 331 NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV 410 (472)
Q Consensus 331 ~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L 410 (472)
|.++.. +. ..++|++|++++|.++. . + ..+++|+.|++++|.++. ++. .+++|+.|
T Consensus 211 N~l~~l-----~~---~~~~L~~L~Ls~N~L~~--l---p---~~l~~L~~L~Ls~N~L~~-----lp~---~~~~L~~L 266 (622)
T 3g06_A 211 NRLTSL-----PA---LPSGLKELIVSGNRLTS--L---P---VLPSELKELMVSGNRLTS-----LPM---LPSGLLSL 266 (622)
T ss_dssp SCCSSC-----CC---CCTTCCEEECCSSCCSC--C---C---CCCTTCCEEECCSSCCSC-----CCC---CCTTCCEE
T ss_pred Cccccc-----CC---CCCCCCEEEccCCccCc--C---C---CCCCcCcEEECCCCCCCc-----CCc---ccccCcEE
Confidence 877632 21 24678888888887763 1 1 345778888888887774 333 45778888
Q ss_pred ECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHH
Q psy3611 411 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456 (472)
Q Consensus 411 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 456 (472)
+|++|.++. ++..+..+++|+.|++++|++++.....+...
T Consensus 267 ~Ls~N~L~~-----lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 267 SVYRNQLTR-----LPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp ECCSSCCCS-----CCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred eCCCCCCCc-----CCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 888888775 56677778888888888888876666555543
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=1e-20 Score=180.02 Aligned_cols=189 Identities=19% Similarity=0.163 Sum_probs=136.7
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCC
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 303 (472)
+++|++|++++|.++.. ...+..... ...++|++|++++|.++... +..++.+++|+.|++++|
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~-~~~~~L~~L~L~~N~l~~~~--------------~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQ-WLKPGLKVLSIAQAHSLNFS--------------CEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHT-TCCTTCCEEEEESCSCCCCC--------------TTTCCCCSSCCEEECCSC
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHH-hhcCCCcEEEeeCCCCccch--------------HHHhccCCCCCEEECCCC
Confidence 47888888888888655 334443321 12368999999999886432 133556788999999999
Q ss_pred CCChhhHHHHHHHH--hcCCCccEEeCCCCCCChhHHHHHH-HHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCc
Q psy3611 304 RLENEGAKMLAAVF--KKLKTLERVEMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 380 (472)
Q Consensus 304 ~l~~~~~~~l~~~~--~~~~~L~~L~l~~~~i~~~~~~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~ 380 (472)
.+.+. ..++..+ ..+++|++|++++|+++..+ .++ ..+..+++|++|++++|.++.... ...+..+++|+
T Consensus 184 ~l~~~--~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~l~~L~ 256 (312)
T 1wwl_A 184 PELGE--RGLISALCPLKFPTLQVLALRNAGMETPS--GVCSALAAARVQLQGLDLSHNSLRDAAG---APSCDWPSQLN 256 (312)
T ss_dssp TTCHH--HHHHHHSCTTSCTTCCEEECTTSCCCCHH--HHHHHHHHTTCCCSEEECTTSCCCSSCC---CSCCCCCTTCC
T ss_pred CcCcc--hHHHHHHHhccCCCCCEEECCCCcCcchH--HHHHHHHhcCCCCCEEECCCCcCCcccc---hhhhhhcCCCC
Confidence 87642 1244444 67889999999999998432 333 445678999999999999885320 02334568999
Q ss_pred EEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChh
Q psy3611 381 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 448 (472)
Q Consensus 381 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 448 (472)
+|++++|.++. ++..+. ++|+.|++++|.++. ++. +..+++|++|++++|++++.
T Consensus 257 ~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~-----~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 257 SLNLSFTGLKQ-----VPKGLP--AKLSVLDLSYNRLDR-----NPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EEECTTSCCSS-----CCSSCC--SEEEEEECCSSCCCS-----CCC-TTTSCEEEEEECTTCTTTCC
T ss_pred EEECCCCccCh-----hhhhcc--CCceEEECCCCCCCC-----Chh-HhhCCCCCEEeccCCCCCCC
Confidence 99999999984 555544 789999999999987 344 77889999999999998753
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=1.8e-20 Score=187.23 Aligned_cols=324 Identities=20% Similarity=0.191 Sum_probs=162.8
Q ss_pred cCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCC-------------CCcEEeccC
Q psy3611 9 LKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLP-------------SLAILNLGD 75 (472)
Q Consensus 9 ~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~-------------~L~~L~ls~ 75 (472)
.++|++|++++|.++ .+|..+.++++|++|++++|.+. +..| ..++.+. ++++|++++
T Consensus 10 ~~~L~~L~l~~n~l~-----~iP~~i~~L~~L~~L~l~~n~~~--~~~p--~~~~~l~~L~~l~l~~c~~~~l~~L~l~~ 80 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLT-----EMPVEAENVKSKTEYYNAWSEWE--RNAP--PGNGEQREMAVSRLRDCLDRQAHELELNN 80 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHH--HTSC--TTSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred cccchhhhcccCchh-----hCChhHhcccchhhhhccCCccc--ccCC--cccccchhcchhhhhhhhccCCCEEEecC
Confidence 466777777777663 46777777777777777776553 2333 2333333 246677777
Q ss_pred ccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHh
Q psy3611 76 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 155 (472)
Q Consensus 76 ~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L 155 (472)
|.+++. +.. .++|++|++++|.++. ++. ..++|++|++++|.+..-. . ..+.++.|
T Consensus 81 ~~l~~l-----p~~---~~~L~~L~l~~n~l~~-----lp~---~~~~L~~L~l~~n~l~~l~-----~---~~~~L~~L 136 (454)
T 1jl5_A 81 LGLSSL-----PEL---PPHLESLVASCNSLTE-----LPE---LPQSLKSLLVDNNNLKALS-----D---LPPLLEYL 136 (454)
T ss_dssp SCCSCC-----CSC---CTTCSEEECCSSCCSS-----CCC---CCTTCCEEECCSSCCSCCC-----S---CCTTCCEE
T ss_pred CccccC-----CCC---cCCCCEEEccCCcCCc-----ccc---ccCCCcEEECCCCccCccc-----C---CCCCCCEE
Confidence 766642 221 2566777777666664 221 1356666666666554310 0 00223333
Q ss_pred hhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCC
Q psy3611 156 VLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDN 235 (472)
Q Consensus 156 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 235 (472)
.+....-. .++. .....+++.++++. +.... .. ....+|++|++++|
T Consensus 137 ~L~~n~l~---~lp~-----------~~~l~~L~~L~l~~----------N~l~~--lp-------~~~~~L~~L~L~~n 183 (454)
T 1jl5_A 137 GVSNNQLE---KLPE-----------LQNSSFLKIIDVDN----------NSLKK--LP-------DLPPSLEFIAAGNN 183 (454)
T ss_dssp ECCSSCCS---SCCC-----------CTTCTTCCEEECCS----------SCCSC--CC-------CCCTTCCEEECCSS
T ss_pred ECcCCCCC---CCcc-----------cCCCCCCCEEECCC----------CcCcc--cC-------CCcccccEEECcCC
Confidence 22211100 0110 01111111111110 00000 00 01147777777777
Q ss_pred CCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHH
Q psy3611 236 AFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAA 315 (472)
Q Consensus 236 ~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 315 (472)
.+.... .+ ..+++|++|++++|.++... ..+++|+.|++++|.+.. ++
T Consensus 184 ~l~~l~--~~------~~l~~L~~L~l~~N~l~~l~------------------~~~~~L~~L~l~~n~l~~-----lp- 231 (454)
T 1jl5_A 184 QLEELP--EL------QNLPFLTAIYADNNSLKKLP------------------DLPLSLESIVAGNNILEE-----LP- 231 (454)
T ss_dssp CCSSCC--CC------TTCTTCCEEECCSSCCSSCC------------------CCCTTCCEEECCSSCCSS-----CC-
T ss_pred cCCcCc--cc------cCCCCCCEEECCCCcCCcCC------------------CCcCcccEEECcCCcCCc-----cc-
Confidence 774432 11 34567778888777765211 012467888888887763 44
Q ss_pred HHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHH
Q psy3611 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 395 (472)
Q Consensus 316 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~ 395 (472)
.+..+++|+.|++++|+++.. +. ..++|++|++++|.+.. . +. ..++|+.|++++|.+.+
T Consensus 232 ~~~~l~~L~~L~l~~N~l~~l-----~~---~~~~L~~L~l~~N~l~~--l---~~---~~~~L~~L~ls~N~l~~---- 291 (454)
T 1jl5_A 232 ELQNLPFLTTIYADNNLLKTL-----PD---LPPSLEALNVRDNYLTD--L---PE---LPQSLTFLDVSENIFSG---- 291 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSSC-----CS---CCTTCCEEECCSSCCSC--C---CC---CCTTCCEEECCSSCCSE----
T ss_pred ccCCCCCCCEEECCCCcCCcc-----cc---cccccCEEECCCCcccc--c---Cc---ccCcCCEEECcCCccCc----
Confidence 256777888888888877631 21 23678888888887763 1 11 24678888888888775
Q ss_pred HHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcC-CcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 396 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 396 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
++. ..++|+.|++++|.+.. ++ .. ++|++|++++|++++. .. ..++|+.|+++++
T Consensus 292 -l~~---~~~~L~~L~l~~N~l~~-----i~----~~~~~L~~L~Ls~N~l~~l-----p~---~~~~L~~L~L~~N 347 (454)
T 1jl5_A 292 -LSE---LPPNLYYLNASSNEIRS-----LC----DLPPSLEELNVSNNKLIEL-----PA---LPPRLERLIASFN 347 (454)
T ss_dssp -ESC---CCTTCCEEECCSSCCSE-----EC----CCCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSS
T ss_pred -ccC---cCCcCCEEECcCCcCCc-----cc----CCcCcCCEEECCCCccccc-----cc---cCCcCCEEECCCC
Confidence 211 12678888888888775 22 23 4888999999887641 11 1477888888876
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=2.9e-20 Score=187.60 Aligned_cols=236 Identities=19% Similarity=0.226 Sum_probs=148.2
Q ss_pred CCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHH
Q psy3611 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 145 (472)
Q Consensus 66 ~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 145 (472)
++|++|++++|.+++. .+..++.+++|++|+|++|.+++.. + +..+++|++|++++|.++.-
T Consensus 34 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~--l~~l~~L~~L~Ls~N~l~~l-------- 95 (487)
T 3oja_A 34 WNVKELDLSGNPLSQI----SAADLAPFTKLELLNLSSNVLYETL----D--LESLSTLRTLDLNNNYVQEL-------- 95 (487)
T ss_dssp GGCCEEECCSSCCCCC----CGGGGTTCTTCCEEECTTSCCEEEE----E--CTTCTTCCEEECCSSEEEEE--------
T ss_pred CCccEEEeeCCcCCCC----CHHHHhCCCCCCEEEeeCCCCCCCc----c--cccCCCCCEEEecCCcCCCC--------
Confidence 3788888888888763 3455667788888888888877521 1 66777888888888766421
Q ss_pred HHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCC
Q psy3611 146 MKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGA 225 (472)
Q Consensus 146 l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (472)
+ ..+
T Consensus 96 -----------------------~-----------------------------------------------------~~~ 99 (487)
T 3oja_A 96 -----------------------L-----------------------------------------------------VGP 99 (487)
T ss_dssp -----------------------E-----------------------------------------------------ECT
T ss_pred -----------------------C-----------------------------------------------------CCC
Confidence 0 125
Q ss_pred cccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCC
Q psy3611 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 305 (472)
Q Consensus 226 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l 305 (472)
.|++|++++|.++..... .+++|+.|++++|.++.... ..++.+++|+.|++++|.+
T Consensus 100 ~L~~L~L~~N~l~~~~~~---------~l~~L~~L~L~~N~l~~~~~--------------~~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS---------RGQGKKNIYLANNKITMLRD--------------LDEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp TCCEEECCSSCCCCEEEC---------CCSSCEEEECCSSCCCSGGG--------------BCGGGGSSEEEEECTTSCC
T ss_pred CcCEEECcCCcCCCCCcc---------ccCCCCEEECCCCCCCCCCc--------------hhhcCCCCCCEEECCCCCC
Confidence 778888888877544321 23577888888877764321 1223356777777777777
Q ss_pred ChhhHHHHHHHHh-cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEc
Q psy3611 306 ENEGAKMLAAVFK-KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384 (472)
Q Consensus 306 ~~~~~~~l~~~~~-~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l 384 (472)
.+. .+..+. .+++|+.|++++|.++.. .....+++|++|++++|.++.. +..+..+++|+.|++
T Consensus 157 ~~~----~~~~l~~~l~~L~~L~Ls~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 157 DTV----NFAELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAFM-----GPEFQSAAGVTWISL 221 (487)
T ss_dssp CEE----EGGGGGGGTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCEE-----CGGGGGGTTCSEEEC
T ss_pred CCc----ChHHHhhhCCcccEEecCCCccccc------cccccCCCCCEEECCCCCCCCC-----CHhHcCCCCccEEEe
Confidence 653 233333 567777777777777632 1222466777777777777631 123556677777777
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEcc
Q psy3611 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVS 441 (472)
Q Consensus 385 ~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 441 (472)
++|.+++ ++..+..+++|+.|++++|.+... .++..+..++.|+.++++
T Consensus 222 s~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~c~---~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 222 RNNKLVL-----IEKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTSCCCE-----ECTTCCCCTTCCEEECTTCCBCHH---HHHHHHTTCHHHHHHHHH
T ss_pred cCCcCcc-----cchhhccCCCCCEEEcCCCCCcCc---chHHHHHhCCCCcEEecc
Confidence 7777764 455556667777777777766632 145556666666655553
No 69
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=2e-19 Score=172.06 Aligned_cols=111 Identities=18% Similarity=0.148 Sum_probs=54.1
Q ss_pred HhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHH
Q psy3611 317 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396 (472)
Q Consensus 317 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~ 396 (472)
+..+++|++|++++|.++. ++..+..+++|++|++++|.+... ++..+..+++|+.|++++|.+.+.
T Consensus 202 l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~---- 268 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRN----YPPIFGGRAPLKRLILKDCSNLLT---- 268 (328)
T ss_dssp GGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCB----CCCCTTCCCCCCEEECTTCTTCCB----
T ss_pred hcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhh----hHHHhcCCCCCCEEECCCCCchhh----
Confidence 3444445555555544441 122344455555555555444321 123344455555555555544433
Q ss_pred HHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC
Q psy3611 397 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444 (472)
Q Consensus 397 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 444 (472)
++..+..+++|+.|+|++|.+... +|..+..+++|+.+++..+.
T Consensus 269 ~p~~~~~l~~L~~L~L~~n~~~~~----iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 269 LPLDIHRLTQLEKLDLRGCVNLSR----LPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CCTTGGGCTTCCEEECTTCTTCCC----CCGGGGGSCTTCEEECCGGG
T ss_pred cchhhhcCCCCCEEeCCCCCchhh----ccHHHhhccCceEEeCCHHH
Confidence 444455555555666655544433 45555555555555555443
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=8.1e-20 Score=173.31 Aligned_cols=105 Identities=16% Similarity=0.280 Sum_probs=67.3
Q ss_pred cEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhc
Q psy3611 13 EHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 92 (472)
Q Consensus 13 ~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~ 92 (472)
+.++.+++.++. +|..+ .++|++|++++|.+.. ++. ..+..+++|++|++++|.++..+ .++..+..
T Consensus 10 ~~l~c~~~~l~~-----ip~~~--~~~l~~L~L~~n~l~~---i~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~ 76 (306)
T 2z66_A 10 TEIRCNSKGLTS-----VPTGI--PSSATRLELESNKLQS---LPH-GVFDKLTQLTKLSLSSNGLSFKG--CCSQSDFG 76 (306)
T ss_dssp TEEECCSSCCSS-----CCSCC--CTTCCEEECCSSCCCC---CCT-TTTTTCTTCSEEECCSSCCCEEE--EEEHHHHS
T ss_pred CEEEcCCCCccc-----CCCCC--CCCCCEEECCCCccCc---cCH-hHhhccccCCEEECCCCccCccc--Cccccccc
Confidence 466777666653 34332 3578888888887742 221 34677788888888888776432 11223345
Q ss_pred CCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCC
Q psy3611 93 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 135 (472)
Q Consensus 93 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 135 (472)
+++|++|++++|.+.. ++..+..+++|++|++++|.+.
T Consensus 77 ~~~L~~L~Ls~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~ 114 (306)
T 2z66_A 77 TTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLK 114 (306)
T ss_dssp CSCCCEEECCSCSEEE-----EEEEEETCTTCCEEECTTSEEE
T ss_pred ccccCEEECCCCcccc-----ChhhcCCCCCCCEEECCCCccc
Confidence 6788888888887764 3444566778888888777664
No 71
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.75 E-value=1.3e-17 Score=145.51 Aligned_cols=139 Identities=22% Similarity=0.173 Sum_probs=108.2
Q ss_pred cceeEEEcCCC-CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 293 LALKVFIAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 293 ~~L~~L~l~~~-~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
++|++|++++| .+++.|+..+...+..+++|++|++++|.|++.|+..+++.+..+++|++|+|++|.++++|+..+++
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 56777777777 77777777777777777788888888888888887788888888888888888888888878777888
Q ss_pred HhcCCCCCcEEEc--CCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCC
Q psy3611 372 ALSKLPSLAILNL--GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 433 (472)
Q Consensus 372 ~l~~~~~L~~L~l--~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 433 (472)
++..++.|++|++ ++|.+++.|+..+...+..+++|+.|+|++|.+++.|+ +...+..+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~--i~~~L~~N~ 177 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNN 177 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHH--HHHHHHHHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHH--HHHHHHhhH
Confidence 8888888888888 77888888888888888888888888888888877663 555555443
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1.4e-20 Score=179.13 Aligned_cols=262 Identities=16% Similarity=0.135 Sum_probs=166.0
Q ss_pred hcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHh-------hcCCcccEEECcCCccC
Q psy3611 35 EENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL-------TDNTTLEDVNLTCNEIS 107 (472)
Q Consensus 35 ~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l-------~~~~~L~~L~l~~~~i~ 107 (472)
...++|++|++++|.+ .+| ..+... |++|++++|.++... ++..+ ..+++|++|++++|.++
T Consensus 40 ~~~~~L~~l~l~~n~l----~~p--~~~~~~--L~~L~L~~n~l~~~~---~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 108 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE----ADL--GQFTDI--IKSLSLKRLTVRAAR---IPSRILFGALRVLGISGLQELTLENLEVT 108 (312)
T ss_dssp EEEEECTTHHHHCCTT----CCC--HHHHHH--HHHCCCCEEEEEEEE---CBHHHHHHHHHHHTTSCCCEEEEEEEBCB
T ss_pred ccCCCceeEeeccccc----ccH--HHHHHH--HhhcccccccccCCC---cCHHHHHHHHHhcCcCCccEEEccCCccc
Confidence 3456788888887776 122 122222 677777777764321 11111 24678888888888887
Q ss_pred cchHHHHHHHh--hhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCC
Q psy3611 108 VQGGLDLVKAM--KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDN 185 (472)
Q Consensus 108 ~~~~~~l~~~l--~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 185 (472)
+. ++..+ ..+++|++|++++|.++.. +..+.....
T Consensus 109 ~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~-------------------------------------- 145 (312)
T 1wwl_A 109 GT----APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQ-------------------------------------- 145 (312)
T ss_dssp SC----CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT--------------------------------------
T ss_pred ch----hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHH--------------------------------------
Confidence 52 33333 6678888888888887654 333332100
Q ss_pred CccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCC
Q psy3611 186 SNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 265 (472)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~ 265 (472)
..+++|++|++++|.++......+ ..+++|++|++++|
T Consensus 146 ------------------------------------~~~~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 146 ------------------------------------WLKPGLKVLSIAQAHSLNFSCEQV------RVFPALSTLDLSDN 183 (312)
T ss_dssp ------------------------------------TCCTTCCEEEEESCSCCCCCTTTC------CCCSSCCEEECCSC
T ss_pred ------------------------------------hhcCCCcEEEeeCCCCccchHHHh------ccCCCCCEEECCCC
Confidence 012678888888888755543333 24568888888888
Q ss_pred CCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHH-HHHhcCCCccEEeCCCCCCChhHHHHHHHH
Q psy3611 266 GLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLA-AVFKKLKTLERVEMPQNGIYHVGITALSDA 344 (472)
Q Consensus 266 ~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 344 (472)
++.... .+...+ .++.+++|+.|++++|.+...+ .++ ..+..+++|+.|++++|+++... ....
T Consensus 184 ~l~~~~--~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~ 248 (312)
T 1wwl_A 184 PELGER--GLISAL--------CPLKFPTLQVLALRNAGMETPS--GVCSALAAARVQLQGLDLSHNSLRDAA---GAPS 248 (312)
T ss_dssp TTCHHH--HHHHHS--------CTTSCTTCCEEECTTSCCCCHH--HHHHHHHHTTCCCSEEECTTSCCCSSC---CCSC
T ss_pred CcCcch--HHHHHH--------HhccCCCCCEEECCCCcCcchH--HHHHHHHhcCCCCCEEECCCCcCCccc---chhh
Confidence 865321 111111 0134578888888888887421 233 34457789999999999887431 0123
Q ss_pred HhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCch
Q psy3611 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 420 (472)
Q Consensus 345 l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 420 (472)
+..+++|++|++++|.++. ++..+. ++|++|++++|.+++ ++. +..+++|+.|++++|.+++.
T Consensus 249 ~~~l~~L~~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~-----~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLKQ-----VPKGLP--AKLSVLDLSYNRLDR-----NPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCCCTTCCEEECTTSCCSS-----CCSSCC--SEEEEEECCSSCCCS-----CCC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhhcCCCCEEECCCCccCh-----hhhhcc--CCceEEECCCCCCCC-----Chh-HhhCCCCCEEeccCCCCCCC
Confidence 3456889999999998872 223333 789999999999886 333 67788999999999988763
No 73
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=9.9e-20 Score=174.25 Aligned_cols=233 Identities=17% Similarity=0.166 Sum_probs=141.5
Q ss_pred CCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHH
Q psy3611 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 144 (472)
Q Consensus 65 ~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 144 (472)
.+++++|++++|.++. ++..++.+++|++|++++|.+.. ++..+..+++|++|++++|.+.. .+.
T Consensus 80 ~~~l~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-lp~---- 144 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLME-----LPDTMQQFAGLETLTLARNPLRA-LPA---- 144 (328)
T ss_dssp STTCCEEEEESSCCSS-----CCSCGGGGTTCSEEEEESSCCCC-----CCSCGGGGTTCSEEEEESCCCCC-CCG----
T ss_pred ccceeEEEccCCCchh-----cChhhhhCCCCCEEECCCCCccc-----hhHHHhccCCCCEEECCCCcccc-CcH----
Confidence 3677777777777763 45556667777777777777763 45566677777777777776641 111
Q ss_pred HHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcC
Q psy3611 145 LMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTG 224 (472)
Q Consensus 145 ~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (472)
.+..+
T Consensus 145 ---------------------------------------------------------------------------~l~~l 149 (328)
T 4fcg_A 145 ---------------------------------------------------------------------------SIASL 149 (328)
T ss_dssp ---------------------------------------------------------------------------GGGGC
T ss_pred ---------------------------------------------------------------------------HHhcC
Confidence 02234
Q ss_pred CcccEEeCCCCCCChhhHHHHHHH---HhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADL---LRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 301 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~---l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~ 301 (472)
++|++|++++|.+.......+... -....+++|++|++++|.++. ++..++.+++|+.|+++
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------------lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS---------------LPASIANLQNLKSLKIR 214 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC---------------CCGGGGGCTTCCEEEEE
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc---------------chHhhcCCCCCCEEEcc
Confidence 677777777765422211111000 000124577777777777651 11223445677777777
Q ss_pred CCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcE
Q psy3611 302 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 381 (472)
Q Consensus 302 ~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~ 381 (472)
+|.+.. ++..+..+++|+.|++++|.+.. .++..+..+++|++|++++|.+... ++..+..+++|++
T Consensus 215 ~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 215 NSPLSA-----LGPAIHHLPKLEELDLRGCTALR----NYPPIFGGRAPLKRLILKDCSNLLT----LPLDIHRLTQLEK 281 (328)
T ss_dssp SSCCCC-----CCGGGGGCTTCCEEECTTCTTCC----BCCCCTTCCCCCCEEECTTCTTCCB----CCTTGGGCTTCCE
T ss_pred CCCCCc-----CchhhccCCCCCEEECcCCcchh----hhHHHhcCCCCCCEEECCCCCchhh----cchhhhcCCCCCE
Confidence 777764 44456677777777777776542 2344566677777777777765521 2345666777777
Q ss_pred EEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 382 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 382 L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
|++++|.+.+. +|..+..+++|+.+++..+.+..
T Consensus 282 L~L~~n~~~~~----iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 282 LDLRGCVNLSR----LPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp EECTTCTTCCC----CCGGGGGSCTTCEEECCGGGSCC
T ss_pred EeCCCCCchhh----ccHHHhhccCceEEeCCHHHHHH
Confidence 77777766654 66677777777777777665543
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=2e-19 Score=181.50 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=46.4
Q ss_pred CCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHH
Q psy3611 37 NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 116 (472)
Q Consensus 37 ~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 116 (472)
+++|++|++++|.+. +..+ ..+..+++|++|++++|.+++.. + +..+++|++|++++|.+++. +
T Consensus 33 ~~~L~~L~Ls~n~l~--~~~~--~~~~~l~~L~~L~Ls~N~l~~~~----~--l~~l~~L~~L~Ls~N~l~~l-----~- 96 (487)
T 3oja_A 33 AWNVKELDLSGNPLS--QISA--ADLAPFTKLELLNLSSNVLYETL----D--LESLSTLRTLDLNNNYVQEL-----L- 96 (487)
T ss_dssp GGGCCEEECCSSCCC--CCCG--GGGTTCTTCCEEECTTSCCEEEE----E--CTTCTTCCEEECCSSEEEEE-----E-
T ss_pred CCCccEEEeeCCcCC--CCCH--HHHhCCCCCCEEEeeCCCCCCCc----c--cccCCCCCEEEecCCcCCCC-----C-
Confidence 346666666666664 2222 44566666666666666665431 1 45566666666666666541 1
Q ss_pred HhhhCCCccEEEecCCcCC
Q psy3611 117 AMKNKTKLKQINVSENQFG 135 (472)
Q Consensus 117 ~l~~~~~L~~L~l~~~~i~ 135 (472)
..++|++|++++|.++
T Consensus 97 ---~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 97 ---VGPSIETLHAANNNIS 112 (487)
T ss_dssp ---ECTTCCEEECCSSCCC
T ss_pred ---CCCCcCEEECcCCcCC
Confidence 2256666666666654
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=2.1e-18 Score=177.88 Aligned_cols=257 Identities=19% Similarity=0.213 Sum_probs=198.9
Q ss_pred CCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHH
Q psy3611 37 NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 116 (472)
Q Consensus 37 ~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 116 (472)
..++++|++++|.++ .+| ..+. ++|++|++++|.++. ++. .+++|++|++++|.++. ++.
T Consensus 39 ~~~l~~L~ls~n~L~---~lp--~~l~--~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~-----lp~ 98 (622)
T 3g06_A 39 NNGNAVLNVGESGLT---TLP--DCLP--AHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQLTS-----LPV 98 (622)
T ss_dssp HHCCCEEECCSSCCS---CCC--SCCC--TTCSEEEECSCCCSC-----CCC---CCTTCCEEEECSCCCSC-----CCC
T ss_pred CCCCcEEEecCCCcC---ccC--hhhC--CCCcEEEecCCCCCC-----CCC---cCCCCCEEEcCCCcCCc-----CCC
Confidence 357999999999984 334 2233 799999999999985 333 46899999999999985 443
Q ss_pred HhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCc
Q psy3611 117 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHS 196 (472)
Q Consensus 117 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (472)
..++|++|++++|.++.- +.
T Consensus 99 ---~l~~L~~L~Ls~N~l~~l------------~~--------------------------------------------- 118 (622)
T 3g06_A 99 ---LPPGLLELSIFSNPLTHL------------PA--------------------------------------------- 118 (622)
T ss_dssp ---CCTTCCEEEECSCCCCCC------------CC---------------------------------------------
T ss_pred ---CCCCCCEEECcCCcCCCC------------CC---------------------------------------------
Confidence 578999999999987631 00
Q ss_pred ccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHH
Q psy3611 197 HNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLS 276 (472)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~ 276 (472)
.+++|++|++++|.++.... ..++|++|++++|.++...
T Consensus 119 --------------------------~l~~L~~L~L~~N~l~~lp~----------~l~~L~~L~Ls~N~l~~l~----- 157 (622)
T 3g06_A 119 --------------------------LPSGLCKLWIFGNQLTSLPV----------LPPGLQELSVSDNQLASLP----- 157 (622)
T ss_dssp --------------------------CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSCCC-----
T ss_pred --------------------------CCCCcCEEECCCCCCCcCCC----------CCCCCCEEECcCCcCCCcC-----
Confidence 13789999999999865321 1368999999999986321
Q ss_pred HHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEc
Q psy3611 277 KALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNL 356 (472)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l 356 (472)
..+++|+.|++++|.+.. ++ ..+++|+.|++++|.++.. +. ..++|+.|++
T Consensus 158 -------------~~~~~L~~L~L~~N~l~~-----l~---~~~~~L~~L~Ls~N~l~~l-----~~---~~~~L~~L~L 208 (622)
T 3g06_A 158 -------------ALPSELCKLWAYNNQLTS-----LP---MLPSGLQELSVSDNQLASL-----PT---LPSELYKLWA 208 (622)
T ss_dssp -------------CCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSCC-----CC---CCTTCCEEEC
T ss_pred -------------CccCCCCEEECCCCCCCC-----Cc---ccCCCCcEEECCCCCCCCC-----CC---ccchhhEEEC
Confidence 124689999999999985 44 4578999999999998732 21 3478999999
Q ss_pred cCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCccc
Q psy3611 357 NDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 436 (472)
Q Consensus 357 ~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 436 (472)
++|.++... ...++|+.|++++|.++. ++ ..+++|+.|++++|.|+. ++. .+++|+
T Consensus 209 ~~N~l~~l~--------~~~~~L~~L~Ls~N~L~~-----lp---~~l~~L~~L~Ls~N~L~~-----lp~---~~~~L~ 264 (622)
T 3g06_A 209 YNNRLTSLP--------ALPSGLKELIVSGNRLTS-----LP---VLPSELKELMVSGNRLTS-----LPM---LPSGLL 264 (622)
T ss_dssp CSSCCSSCC--------CCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSC-----CCC---CCTTCC
T ss_pred cCCcccccC--------CCCCCCCEEEccCCccCc-----CC---CCCCcCcEEECCCCCCCc-----CCc---ccccCc
Confidence 999987311 235789999999999986 44 456899999999999986 454 678999
Q ss_pred EEEccCCCCChhHHHHHHHHHHhCCceeEEecCCCC
Q psy3611 437 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 472 (472)
Q Consensus 437 ~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~~ 472 (472)
+|++++|+++. +...+..+++|+.|++++|.
T Consensus 265 ~L~Ls~N~L~~-----lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 265 SLSVYRNQLTR-----LPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EEECCSSCCCS-----CCGGGGGSCTTCEEECCSCC
T ss_pred EEeCCCCCCCc-----CCHHHhhccccCEEEecCCC
Confidence 99999999872 23457789999999999873
No 76
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=6.4e-19 Score=175.87 Aligned_cols=246 Identities=20% Similarity=0.207 Sum_probs=142.5
Q ss_pred ccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhh
Q psy3611 12 LEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 91 (472)
Q Consensus 12 L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~ 91 (472)
.+.++..+..++. +|..+ .+++++|++++|.+... .+ ..|..+++|++|++++|.+++.. +..+.
T Consensus 45 ~~~v~c~~~~l~~-----iP~~~--~~~l~~L~L~~n~i~~~--~~--~~~~~l~~L~~L~Ls~n~i~~i~----~~~~~ 109 (440)
T 3zyj_A 45 FSKVICVRKNLRE-----VPDGI--STNTRLLNLHENQIQII--KV--NSFKHLRHLEILQLSRNHIRTIE----IGAFN 109 (440)
T ss_dssp SCEEECCSCCCSS-----CCSCC--CTTCSEEECCSCCCCEE--CT--TTTSSCSSCCEEECCSSCCCEEC----GGGGT
T ss_pred CCEEEeCCCCcCc-----CCCCC--CCCCcEEEccCCcCCee--CH--HHhhCCCCCCEEECCCCcCCccC----hhhcc
Confidence 3455655555552 44333 25677777777776422 22 45677777777777777776532 24455
Q ss_pred cCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccch
Q psy3611 92 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDE 171 (472)
Q Consensus 92 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~ 171 (472)
.+++|++|+|++|.++.. ....+..+++|++|++++|.+.....
T Consensus 110 ~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~-------------------------------- 153 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTI----PNGAFVYLSKLKELWLRNNPIESIPS-------------------------------- 153 (440)
T ss_dssp TCSSCCEEECCSSCCSSC----CTTTSCSCSSCCEEECCSCCCCEECT--------------------------------
T ss_pred CCccCCEEECCCCcCCee----CHhHhhccccCceeeCCCCcccccCH--------------------------------
Confidence 677777777777777642 12345667777777777776653110
Q ss_pred hhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCC-ChhhHHHHHHHHh
Q psy3611 172 ESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAF-GPIGVEGLADLLR 250 (472)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~l~~~l~ 250 (472)
..+..+++|++|+++++.. +......+
T Consensus 154 -----------------------------------------------~~~~~l~~L~~L~l~~~~~l~~i~~~~~----- 181 (440)
T 3zyj_A 154 -----------------------------------------------YAFNRIPSLRRLDLGELKRLSYISEGAF----- 181 (440)
T ss_dssp -----------------------------------------------TTTTTCTTCCEEECCCCTTCCEECTTTT-----
T ss_pred -----------------------------------------------HHhhhCcccCEeCCCCCCCcceeCcchh-----
Confidence 0122346677777766432 32222112
Q ss_pred ccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCC
Q psy3611 251 SSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ 330 (472)
Q Consensus 251 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~ 330 (472)
..+++|++|++++|.++.. +.+..+++|+.|++++|.+... .+..+..+++|++|++++
T Consensus 182 -~~l~~L~~L~L~~n~l~~~----------------~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 182 -EGLSNLRYLNLAMCNLREI----------------PNLTPLIKLDELDLSGNHLSAI----RPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp -TTCSSCCEEECTTSCCSSC----------------CCCTTCSSCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTT
T ss_pred -hcccccCeecCCCCcCccc----------------cccCCCcccCEEECCCCccCcc----ChhhhccCccCCEEECCC
Confidence 2345677777777766522 1234456677777777766642 234555666777777777
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCC
Q psy3611 331 NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 389 (472)
Q Consensus 331 ~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i 389 (472)
|+++... +..+.++++|+.|++++|.++.... +.+..+++|+.|++++|.+
T Consensus 241 n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 241 SQIQVIE----RNAFDNLQSLVEINLAHNNLTLLPH----DLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCCEEC----TTSSTTCTTCCEEECTTSCCCCCCT----TTTSSCTTCCEEECCSSCE
T ss_pred CceeEEC----hhhhcCCCCCCEEECCCCCCCccCh----hHhccccCCCEEEcCCCCc
Confidence 7666432 3445566677777777776663221 3455566777777776654
No 77
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=6.3e-19 Score=176.56 Aligned_cols=245 Identities=19% Similarity=0.229 Sum_probs=133.7
Q ss_pred cEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhc
Q psy3611 13 EHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 92 (472)
Q Consensus 13 ~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~ 92 (472)
..++..+..++. +|..+ .+++++|++++|.+.. ..+ ..|..+++|++|++++|.+++. .+..+..
T Consensus 57 ~~v~c~~~~l~~-----iP~~~--~~~l~~L~L~~n~i~~--~~~--~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~ 121 (452)
T 3zyi_A 57 SKVVCTRRGLSE-----VPQGI--PSNTRYLNLMENNIQM--IQA--DTFRHLHHLEVLQLGRNSIRQI----EVGAFNG 121 (452)
T ss_dssp CEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCE--ECT--TTTTTCTTCCEEECCSSCCCEE----CTTTTTT
T ss_pred cEEEECCCCcCc-----cCCCC--CCCccEEECcCCcCce--ECH--HHcCCCCCCCEEECCCCccCCc----ChhhccC
Confidence 455555554442 33322 2567777777776642 223 4566677777777777776653 2344555
Q ss_pred CCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchh
Q psy3611 93 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEE 172 (472)
Q Consensus 93 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~ 172 (472)
+++|++|+|++|.++.. .+..+..+++|++|++++|.+.....
T Consensus 122 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~--------------------------------- 164 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVI----PSGAFEYLSKLRELWLRNNPIESIPS--------------------------------- 164 (452)
T ss_dssp CTTCCEEECCSSCCSBC----CTTTSSSCTTCCEEECCSCCCCEECT---------------------------------
T ss_pred cccCCEEECCCCcCCcc----ChhhhcccCCCCEEECCCCCcceeCH---------------------------------
Confidence 67777777777776642 12334556677777777776542110
Q ss_pred hhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCC-CChhhHHHHHHHHhc
Q psy3611 173 SEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNA-FGPIGVEGLADLLRS 251 (472)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~l~~ 251 (472)
..+..+++|++|+++++. +.......+
T Consensus 165 ----------------------------------------------~~~~~l~~L~~L~l~~~~~l~~i~~~~~------ 192 (452)
T 3zyi_A 165 ----------------------------------------------YAFNRVPSLMRLDLGELKKLEYISEGAF------ 192 (452)
T ss_dssp ----------------------------------------------TTTTTCTTCCEEECCCCTTCCEECTTTT------
T ss_pred ----------------------------------------------hHHhcCCcccEEeCCCCCCccccChhhc------
Confidence 012234666666666633 232221111
Q ss_pred cCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCC
Q psy3611 252 SCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQN 331 (472)
Q Consensus 252 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~ 331 (472)
..+++|++|++++|.++.. +.+..+++|+.|++++|.+... .+..+..+++|+.|++++|
T Consensus 193 ~~l~~L~~L~L~~n~l~~~----------------~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDM----------------PNLTPLVGLEELEMSGNHFPEI----RPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp TTCTTCCEEECTTSCCSSC----------------CCCTTCTTCCEEECTTSCCSEE----CGGGGTTCTTCCEEECTTS
T ss_pred cCCCCCCEEECCCCccccc----------------ccccccccccEEECcCCcCccc----CcccccCccCCCEEEeCCC
Confidence 2345666666666666422 1233455666666666666542 2345556666666666666
Q ss_pred CCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCC
Q psy3611 332 GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 389 (472)
Q Consensus 332 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i 389 (472)
++.... +..+..+++|+.|++++|.++.... +.+..+++|+.|++++|.+
T Consensus 253 ~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 253 QVSLIE----RNAFDGLASLVELNLAHNNLSSLPH----DLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCCEEC----TTTTTTCTTCCEEECCSSCCSCCCT----TSSTTCTTCCEEECCSSCE
T ss_pred cCceEC----HHHhcCCCCCCEEECCCCcCCccCh----HHhccccCCCEEEccCCCc
Confidence 665332 3345556666666666666652111 3344566666666666654
No 78
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=1.5e-19 Score=171.40 Aligned_cols=113 Identities=16% Similarity=0.239 Sum_probs=89.2
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++|++|++++|.++... +..+..+++|++|++++|.+...+..+ ..+..+++|++|++++|.+.. ++..
T Consensus 28 ~~l~~L~L~~n~l~~i~----~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~~~~L~~L~Ls~n~i~~-----l~~~ 96 (306)
T 2z66_A 28 SSATRLELESNKLQSLP----HGVFDKLTQLTKLSLSSNGLSFKGCCS--QSDFGTTSLKYLDLSFNGVIT-----MSSN 96 (306)
T ss_dssp TTCCEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCEEEEEE--HHHHSCSCCCEEECCSCSEEE-----EEEE
T ss_pred CCCCEEECCCCccCccC----HhHhhccccCCEEECCCCccCcccCcc--cccccccccCEEECCCCcccc-----Chhh
Confidence 58999999999988522 345788999999999999987655545 446678999999999999875 4455
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCCh
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 136 (472)
+..+++|++|++++|.+..... ...+..+++|++|++++|.+..
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEE
T ss_pred cCCCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCc
Confidence 6778999999999999886311 1356778899999999887653
No 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=4.5e-18 Score=169.73 Aligned_cols=230 Identities=18% Similarity=0.191 Sum_probs=174.7
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++++.|+|++|.+.... +..+..+++|++|++++|.+.. ..+ ..|..+++|++|++++|.++.. -+..
T Consensus 64 ~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~--i~~--~~~~~l~~L~~L~L~~n~l~~~----~~~~ 131 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIK----VNSFKHLRHLEILQLSRNHIRT--IEI--GAFNGLANLNTLELFDNRLTTI----PNGA 131 (440)
T ss_dssp TTCSEEECCSCCCCEEC----TTTTSSCSSCCEEECCSSCCCE--ECG--GGGTTCSSCCEEECCSSCCSSC----CTTT
T ss_pred CCCcEEEccCCcCCeeC----HHHhhCCCCCCEEECCCCcCCc--cCh--hhccCCccCCEEECCCCcCCee----CHhH
Confidence 57999999999988633 5678899999999999999863 333 5688999999999999999863 2345
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcccc
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQ 169 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~ 169 (472)
+..+++|++|++++|.+... ....+..+++|++|++++|...... +
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~l~~~~~l~~i------------------------------~ 177 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESI----PSYAFNRIPSLRRLDLGELKRLSYI------------------------------S 177 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEE------------------------------C
T ss_pred hhccccCceeeCCCCccccc----CHHHhhhCcccCEeCCCCCCCccee------------------------------C
Confidence 67789999999999999852 2345678899999999985322110 0
Q ss_pred chhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHH
Q psy3611 170 DEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLL 249 (472)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l 249 (472)
...+..+++|++|++++|.++... .
T Consensus 178 ------------------------------------------------~~~~~~l~~L~~L~L~~n~l~~~~--~----- 202 (440)
T 3zyj_A 178 ------------------------------------------------EGAFEGLSNLRYLNLAMCNLREIP--N----- 202 (440)
T ss_dssp ------------------------------------------------TTTTTTCSSCCEEECTTSCCSSCC--C-----
T ss_pred ------------------------------------------------cchhhcccccCeecCCCCcCcccc--c-----
Confidence 011334589999999999986443 1
Q ss_pred hccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCC
Q psy3611 250 RSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP 329 (472)
Q Consensus 250 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~ 329 (472)
...+++|++|++++|.++... +..+..+++|+.|++++|.+... .+.++..+++|+.|+++
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~~~--------------~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSAIR--------------PGSFQGLMHLQKLWMIQSQIQVI----ERNAFDNLQSLVEINLA 263 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCEEC--------------TTTTTTCTTCCEEECTTCCCCEE----CTTSSTTCTTCCEEECT
T ss_pred -cCCCcccCEEECCCCccCccC--------------hhhhccCccCCEEECCCCceeEE----ChhhhcCCCCCCEEECC
Confidence 235678999999999987432 22345578999999999999864 34466788999999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCCCCc
Q psy3611 330 QNGIYHVGITALSDAFEENKNLRHLNLNDNTITY 363 (472)
Q Consensus 330 ~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~ 363 (472)
+|+++... ...+..+++|+.|++++|.+.-
T Consensus 264 ~N~l~~~~----~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 264 HNNLTLLP----HDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TSCCCCCC----TTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCCccC----hhHhccccCCCEEEcCCCCccC
Confidence 99988432 3456778999999999998763
No 80
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=7.1e-18 Score=158.15 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=35.5
Q ss_pred cEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCCh
Q psy3611 69 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 69 ~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 136 (472)
++++.+++.++. ++.. ..++|++|++++|.++.. .+..+..+++|++|++++|.+..
T Consensus 14 ~~~~c~~~~l~~-----ip~~--~~~~l~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~l~~ 70 (285)
T 1ozn_A 14 VTTSCPQQGLQA-----VPVG--IPAASQRIFLHGNRISHV----PAASFRACRNLTILWLHSNVLAR 70 (285)
T ss_dssp CEEECCSSCCSS-----CCTT--CCTTCSEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCCE
T ss_pred eEEEcCcCCccc-----CCcC--CCCCceEEEeeCCcCCcc----CHHHcccCCCCCEEECCCCccce
Confidence 467777776664 2321 235777777777777752 22345667777777777776653
No 81
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=3.5e-18 Score=171.14 Aligned_cols=230 Identities=20% Similarity=0.162 Sum_probs=174.2
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
+++++|+|++|.+... .+..|..+++|++|++++|.+. +..+ ..+..+++|++|++++|.++.. .+..
T Consensus 75 ~~l~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~--~~~~--~~~~~l~~L~~L~L~~n~l~~~----~~~~ 142 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI----QADTFRHLHHLEVLQLGRNSIR--QIEV--GAFNGLASLNTLELFDNWLTVI----PSGA 142 (452)
T ss_dssp TTCSEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCC--EECT--TTTTTCTTCCEEECCSSCCSBC----CTTT
T ss_pred CCccEEECcCCcCceE----CHHHcCCCCCCCEEECCCCccC--CcCh--hhccCcccCCEEECCCCcCCcc----Chhh
Confidence 5799999999998863 3667889999999999999986 3333 5688899999999999999863 2344
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcccc
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQ 169 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~ 169 (472)
+..+++|++|++++|.+... ....+..+++|+.|++++|+..... +
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~~~~l~~i------------------------------~ 188 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESI----PSYAFNRVPSLMRLDLGELKKLEYI------------------------------S 188 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEE------------------------------C
T ss_pred hcccCCCCEEECCCCCccee----CHhHHhcCCcccEEeCCCCCCcccc------------------------------C
Confidence 67789999999999999852 2345678899999999985322110 0
Q ss_pred chhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHH
Q psy3611 170 DEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLL 249 (472)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l 249 (472)
...+..+++|++|++++|.++... .
T Consensus 189 ------------------------------------------------~~~~~~l~~L~~L~L~~n~l~~~~--~----- 213 (452)
T 3zyi_A 189 ------------------------------------------------EGAFEGLFNLKYLNLGMCNIKDMP--N----- 213 (452)
T ss_dssp ------------------------------------------------TTTTTTCTTCCEEECTTSCCSSCC--C-----
T ss_pred ------------------------------------------------hhhccCCCCCCEEECCCCcccccc--c-----
Confidence 011334589999999999986442 1
Q ss_pred hccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCC
Q psy3611 250 RSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP 329 (472)
Q Consensus 250 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~ 329 (472)
...+++|++|++++|.++.... ..+..+++|+.|++++|.+... .+.++..+++|+.|+++
T Consensus 214 -~~~l~~L~~L~Ls~N~l~~~~~--------------~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 214 -LTPLVGLEELEMSGNHFPEIRP--------------GSFHGLSSLKKLWVMNSQVSLI----ERNAFDGLASLVELNLA 274 (452)
T ss_dssp -CTTCTTCCEEECTTSCCSEECG--------------GGGTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECC
T ss_pred -ccccccccEEECcCCcCcccCc--------------ccccCccCCCEEEeCCCcCceE----CHHHhcCCCCCCEEECC
Confidence 2356789999999999874322 2235578899999999999864 34567788999999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCCCCc
Q psy3611 330 QNGIYHVGITALSDAFEENKNLRHLNLNDNTITY 363 (472)
Q Consensus 330 ~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~ 363 (472)
+|+++... ...+..+++|+.|++++|.+.-
T Consensus 275 ~N~l~~~~----~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 275 HNNLSSLP----HDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp SSCCSCCC----TTSSTTCTTCCEEECCSSCEEC
T ss_pred CCcCCccC----hHHhccccCCCEEEccCCCcCC
Confidence 99987432 3456678999999999998763
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=2e-18 Score=163.95 Aligned_cols=190 Identities=16% Similarity=0.122 Sum_probs=127.7
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCC
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 303 (472)
++.|++|++++|.++......-.. ....+++|++|++++|.++... +..++.+++|+.|++++|
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~--------------~~~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAEL--QQWLKPGLKVLSIAQAHSPAFS--------------CEQVRAFPALTSLDLSDN 179 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHH--HTTBCSCCCEEEEECCSSCCCC--------------TTSCCCCTTCCEEECCSC
T ss_pred CCCCCEEEeecccccchhhhhHHH--HhhhccCCCEEEeeCCCcchhh--------------HHHhccCCCCCEEECCCC
Confidence 467778888888775422110001 1124568888888888875322 123455778889999988
Q ss_pred CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHH-HhcCCCccEEEccCCCCCcccHHHHHHHhcCC---CCC
Q psy3611 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA-FEENKNLRHLNLNDNTITYKGAIPLGQALSKL---PSL 379 (472)
Q Consensus 304 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~-l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~---~~L 379 (472)
.+...........+..+++|++|++++|+++..+ ..+.. +..+++|++|++++|.++... +..+..+ ++|
T Consensus 180 ~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~~l~~L~~L~Ls~N~l~~~~----p~~~~~~~~~~~L 253 (310)
T 4glp_A 180 PGLGERGLMAALCPHKFPAIQNLALRNTGMETPT--GVCAALAAAGVQPHSLDLSHNSLRATV----NPSAPRCMWSSAL 253 (310)
T ss_dssp TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH--HHHHHHHHHTCCCSSEECTTSCCCCCC----CSCCSSCCCCTTC
T ss_pred CCccchhhhHHHhhhcCCCCCEEECCCCCCCchH--HHHHHHHhcCCCCCEEECCCCCCCccc----hhhHHhccCcCcC
Confidence 8764311111122356789999999999987332 33333 467899999999999987431 1223333 689
Q ss_pred cEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChh
Q psy3611 380 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 448 (472)
Q Consensus 380 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 448 (472)
++|++++|.++. ++..+. ++|+.|++++|.++. ++. +..+++|++|++++|++++.
T Consensus 254 ~~L~Ls~N~l~~-----lp~~~~--~~L~~L~Ls~N~l~~-----~~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 254 NSLNLSFAGLEQ-----VPKGLP--AKLRVLDLSSNRLNR-----APQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCEECCSSCCCS-----CCSCCC--SCCSCEECCSCCCCS-----CCC-TTSCCCCSCEECSSTTTSCC
T ss_pred CEEECCCCCCCc-----hhhhhc--CCCCEEECCCCcCCC-----Cch-hhhCCCccEEECcCCCCCCC
Confidence 999999999984 555443 799999999999886 222 56788999999999998754
No 83
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.71 E-value=9.9e-17 Score=138.67 Aligned_cols=150 Identities=14% Similarity=0.179 Sum_probs=126.9
Q ss_pred HHHHHHhcCCCccEEeCCCC-CCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCC
Q psy3611 312 MLAAVFKKLKTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLK 390 (472)
Q Consensus 312 ~l~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 390 (472)
.+...+...++|++|+++++ .|++.|+..++++++.+.+|++|+|++|.+++.|+..+++++...+.|++|+|++|.|+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 45666677889999999985 89999999999999999999999999999999898889999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCCEEECcCC---CCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCce
Q psy3611 391 SAGASSIAKYLTDNTTLEDVNLTCN---EISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 463 (472)
Q Consensus 391 ~~~~~~l~~~l~~~~~L~~L~L~~n---~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L 463 (472)
+.|+..+..++..+++|+.|+|++| .+++.|+..+.++++.+++|++|+++.|.++. ...+.++++.++.+
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~--~~~ia~aL~~N~~~ 185 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA--RHRVSEALERNYER 185 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH--HHHHHHHHHhcchH
Confidence 9999999999999999999999764 67888888899999999999999998776532 23577777766654
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=4.5e-18 Score=161.53 Aligned_cols=137 Identities=23% Similarity=0.255 Sum_probs=72.0
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHH-HhhcccCcCCCCCcceeEEEcCC
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL-HDCYESSKKEGSPLALKVFIAGR 302 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l-~~~~~~~~~~~~~~~L~~L~l~~ 302 (472)
+++|++|++++|.+.... .+........+++|++|++++|.++.... ....+ .. +++|++|++++
T Consensus 168 l~~L~~L~Ls~N~l~~~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~~----------l~~L~~L~Ls~ 233 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGER--GLMAALCPHKFPAIQNLALRNTGMETPTG--VCAALAAA----------GVQPHSLDLSH 233 (310)
T ss_dssp CTTCCEEECCSCTTCHHH--HHHTTSCTTSSCCCCSCBCCSSCCCCHHH--HHHHHHHH----------TCCCSSEECTT
T ss_pred CCCCCEEECCCCCCccch--hhhHHHhhhcCCCCCEEECCCCCCCchHH--HHHHHHhc----------CCCCCEEECCC
Confidence 356666666666653221 11111111234566666666666652211 11111 11 34566666666
Q ss_pred CCCChhhHHHHHHHHhcC---CCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCC
Q psy3611 303 NRLENEGAKMLAAVFKKL---KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSL 379 (472)
Q Consensus 303 ~~l~~~~~~~l~~~~~~~---~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L 379 (472)
|.+.+. .|..+..+ ++|++|++++|+++. ++..+ .++|++|++++|.++. + ..+..+++|
T Consensus 234 N~l~~~----~p~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~--~~~L~~L~Ls~N~l~~--~----~~~~~l~~L 296 (310)
T 4glp_A 234 NSLRAT----VNPSAPRCMWSSALNSLNLSFAGLEQ-----VPKGL--PAKLRVLDLSSNRLNR--A----PQPDELPEV 296 (310)
T ss_dssp SCCCCC----CCSCCSSCCCCTTCCCEECCSSCCCS-----CCSCC--CSCCSCEECCSCCCCS--C----CCTTSCCCC
T ss_pred CCCCcc----chhhHHhccCcCcCCEEECCCCCCCc-----hhhhh--cCCCCEEECCCCcCCC--C----chhhhCCCc
Confidence 666542 12233333 577777777777762 23322 2577777777777763 2 123456777
Q ss_pred cEEEcCCCCCCh
Q psy3611 380 AILNLGDCLLKS 391 (472)
Q Consensus 380 ~~L~l~~~~i~~ 391 (472)
+.|++++|.+++
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 777777777765
No 85
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=1.5e-17 Score=155.86 Aligned_cols=134 Identities=22% Similarity=0.259 Sum_probs=67.1
Q ss_pred CcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 292 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 292 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
+++|+.|++++|.+... .+..+..+++|++|++++|+++... +..+..+++|++|++++|.++.... .
T Consensus 104 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~----~ 171 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQALP----DDTFRDLGNLTHLFLHGNRISSVPE----R 171 (285)
T ss_dssp CTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCEECT----T
T ss_pred CcCCCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCcccccC----HhHhccCCCccEEECCCCcccccCH----H
Confidence 45555555555555432 2233445555555555555554221 2234445555555555555542111 2
Q ss_pred HhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCC
Q psy3611 372 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445 (472)
Q Consensus 372 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 445 (472)
.+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.++.. .+..+..+++|++|++++|++
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHV----HPHAFRDLGRLMTLYLFANNLSAL----PTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCSCC----CHHHHTTCTTCCEEECCSSCE
T ss_pred HhcCccccCEEECCCCccccc----CHhHccCcccccEeeCCCCcCCcC----CHHHcccCcccCEEeccCCCc
Confidence 344455555555555555542 234444555555555555555542 233445555555555555554
No 86
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.70 E-value=3e-16 Score=135.61 Aligned_cols=132 Identities=11% Similarity=0.165 Sum_probs=125.1
Q ss_pred HHHHHHhcCCCccEEEccCC-CCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCC
Q psy3611 340 ALSDAFEENKNLRHLNLNDN-TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 418 (472)
Q Consensus 340 ~l~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 418 (472)
.+...+...++|++|++++| .++++|+..+++++...+.|+.|+|++|.|++.|+..++.++..+++|+.|+|++|.|+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 56777788999999999996 99999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCcccEEEccCC---CCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 419 VQGGLDLVKAMKNKTKLKQINVSEN---QFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 419 ~~~~~~l~~~l~~~~~L~~L~l~~n---~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+.|+..+.+++..+++|++|++++| .+++.+...+.++++.+++|..|+++++
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 9999999999999999999999865 7899999999999999999999999875
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=5.3e-16 Score=145.57 Aligned_cols=193 Identities=18% Similarity=0.178 Sum_probs=150.0
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
+.+++|++++|.++......+. .+++|++|++++|.++.... .+.+++|+.|++++|.
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~----------------~~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLM------PYTRLTQLNLDRAELTKLQV----------------DGTLPVLGTLDLSHNQ 88 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGT------TCTTCCEEECTTSCCCEEEC----------------CSCCTTCCEEECCSSC
T ss_pred CCCCEEEcCCCcCCccCHHHhh------cCCCCCEEECCCCccCcccC----------------CCCCCcCCEEECCCCc
Confidence 5889999999999665544442 45789999999999874321 1346789999999999
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEc
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l 384 (472)
+.. ++..+..+++|+.|++++|+++... +..+.++++|++|++++|.++... +..+..+++|+.|++
T Consensus 89 l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 89 LQS-----LPLLGQTLPALTVLDVSFNRLTSLP----LGALRGLGELQELYLKGNELKTLP----PGLLTPTPKLEKLSL 155 (290)
T ss_dssp CSS-----CCCCTTTCTTCCEEECCSSCCCCCC----SSTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEEC
T ss_pred CCc-----CchhhccCCCCCEEECCCCcCcccC----HHHHcCCCCCCEEECCCCCCCccC----hhhcccccCCCEEEC
Confidence 874 5666778899999999999987432 356778899999999999988422 145677899999999
Q ss_pred CCCCCChHHHHHHH-HHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh-hHHHHHHHHHHhCCc
Q psy3611 385 GDCLLKSAGASSIA-KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE-EGVEEMEKLMKSFGM 462 (472)
Q Consensus 385 ~~~~i~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~-~~~~~l~~~l~~~~~ 462 (472)
++|.++. ++ ..+..+++|+.|++++|.+.. ++..+...+.|+.+++++|++.. -....+..+++.++.
T Consensus 156 ~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~~ 225 (290)
T 1p9a_G 156 ANNNLTE-----LPAGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225 (290)
T ss_dssp TTSCCSC-----CCTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGG
T ss_pred CCCcCCc-----cCHHHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCeEEeCCCCccCcCccHHHHHHHHhCcc
Confidence 9999986 43 345678999999999999986 67778788899999999999754 334556777777654
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=2.7e-15 Score=142.05 Aligned_cols=171 Identities=19% Similarity=0.254 Sum_probs=131.1
Q ss_pred cCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCC
Q psy3611 223 TGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 302 (472)
Q Consensus 223 ~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~ 302 (472)
.+++|++|++++|.+..... + ..+++|++|++++|.++... .++.+++|+.|++++
T Consensus 61 ~l~~L~~L~L~~n~i~~~~~--~------~~l~~L~~L~L~~n~l~~~~----------------~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDLAP--L------KNLTKITELELSGNPLKNVS----------------AIAGLQSIKTLDLTS 116 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGG--G------TTCCSCCEEECCSCCCSCCG----------------GGTTCTTCCEEECTT
T ss_pred ccCCCCEEEccCCcCCCChh--H------ccCCCCCEEEccCCcCCCch----------------hhcCCCCCCEEECCC
Confidence 35789999999998865443 2 35678999999999886531 134467899999999
Q ss_pred CCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEE
Q psy3611 303 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 382 (472)
Q Consensus 303 ~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L 382 (472)
|.+.+. + .+..+++|++|++++|.++... .+..+++|+.|++++|.+++.. .+..+++|+.|
T Consensus 117 n~l~~~-----~-~l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L 178 (308)
T 1h6u_A 117 TQITDV-----T-PLAGLSNLQVLYLDLNQITNIS------PLAGLTNLQYLSIGNAQVSDLT------PLANLSKLTTL 178 (308)
T ss_dssp SCCCCC-----G-GGTTCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEE
T ss_pred CCCCCc-----h-hhcCCCCCCEEECCCCccCcCc------cccCCCCccEEEccCCcCCCCh------hhcCCCCCCEE
Confidence 988762 2 2678889999999999887442 2778889999999999887421 26778899999
Q ss_pred EcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 383 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 383 ~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
++++|.+.+. +. +..+++|+.|++++|.+... + .+..+++|++|++++|+++.
T Consensus 179 ~l~~n~l~~~-----~~-l~~l~~L~~L~L~~N~l~~~-----~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 179 KADDNKISDI-----SP-LASLPNLIEVHLKNNQISDV-----S-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ECCSSCCCCC-----GG-GGGCTTCCEEECTTSCCCBC-----G-GGTTCTTCCEEEEEEEEEEC
T ss_pred ECCCCccCcC-----hh-hcCCCCCCEEEccCCccCcc-----c-cccCCCCCCEEEccCCeeec
Confidence 9999988863 22 67788999999999998874 3 37788899999999888754
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=6.2e-16 Score=146.47 Aligned_cols=189 Identities=18% Similarity=0.215 Sum_probs=153.7
Q ss_pred cCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCC
Q psy3611 223 TGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 302 (472)
Q Consensus 223 ~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~ 302 (472)
.++.|++|+++++.+.... .+ ..+++|++|++++|.+++... ++.+++|+.|++++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~--~~------~~l~~L~~L~L~~n~i~~~~~----------------~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE--GV------QYLNNLIGLELKDNQITDLAP----------------LKNLTKITELELSG 94 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT--TG------GGCTTCCEEECCSSCCCCCGG----------------GTTCCSCCEEECCS
T ss_pred HcCCcCEEEeeCCCccCch--hh------hccCCCCEEEccCCcCCCChh----------------HccCCCCCEEEccC
Confidence 3579999999999986532 22 246799999999999875432 34478999999999
Q ss_pred CCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEE
Q psy3611 303 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 382 (472)
Q Consensus 303 ~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L 382 (472)
|.+... + .+..+++|++|++++|+++... .+..+++|++|++++|.++.. ..+..+++|+.|
T Consensus 95 n~l~~~-----~-~~~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L 156 (308)
T 1h6u_A 95 NPLKNV-----S-AIAGLQSIKTLDLTSTQITDVT------PLAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYL 156 (308)
T ss_dssp CCCSCC-----G-GGTTCTTCCEEECTTSCCCCCG------GGTTCTTCCEEECCSSCCCCC------GGGGGCTTCCEE
T ss_pred CcCCCc-----h-hhcCCCCCCEEECCCCCCCCch------hhcCCCCCCEEECCCCccCcC------ccccCCCCccEE
Confidence 999863 2 5778999999999999998532 378899999999999999842 227789999999
Q ss_pred EcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCc
Q psy3611 383 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 462 (472)
Q Consensus 383 ~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~ 462 (472)
++++|.+.+. +. +..+++|+.|++++|.+... +. +..+++|++|++++|++++.. .+..+++
T Consensus 157 ~l~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~-----~~-l~~l~~L~~L~L~~N~l~~~~------~l~~l~~ 218 (308)
T 1h6u_A 157 SIGNAQVSDL-----TP-LANLSKLTTLKADDNKISDI-----SP-LASLPNLIEVHLKNNQISDVS------PLANTSN 218 (308)
T ss_dssp ECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCC-----GG-GGGCTTCCEEECTTSCCCBCG------GGTTCTT
T ss_pred EccCCcCCCC-----hh-hcCCCCCCEEECCCCccCcC-----hh-hcCCCCCCEEEccCCccCccc------cccCCCC
Confidence 9999999873 33 78889999999999999873 32 788999999999999998654 2677999
Q ss_pred eeEEecCCC
Q psy3611 463 AAALVLEDD 471 (472)
Q Consensus 463 L~~L~l~~~ 471 (472)
|+.|+++++
T Consensus 219 L~~L~l~~N 227 (308)
T 1h6u_A 219 LFIVTLTNQ 227 (308)
T ss_dssp CCEEEEEEE
T ss_pred CCEEEccCC
Confidence 999999865
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=3e-16 Score=146.30 Aligned_cols=208 Identities=20% Similarity=0.217 Sum_probs=122.7
Q ss_pred CCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHH
Q psy3611 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 117 (472)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 117 (472)
++|++|++++|.+.... + ..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+... .+..
T Consensus 28 ~~l~~L~ls~n~l~~~~--~--~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG--S--YSFFSFPELQVLDLSRCEIQTI----EDGAYQSLSHLSTLILTGNPIQSL----ALGA 95 (276)
T ss_dssp TTCCEEECTTCCCCEEC--T--TTTTTCTTCSEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCEE----CTTT
T ss_pred CCccEEECCCCcccccC--H--hHhccccCCcEEECCCCcCCcc----CHHHccCCcCCCEEECCCCccCcc----Chhh
Confidence 46777777777764322 2 3466677777777777777653 223455667777777777777652 2345
Q ss_pred hhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcc
Q psy3611 118 MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSH 197 (472)
Q Consensus 118 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (472)
+..+++|++|++++|.+......
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~--------------------------------------------------------- 118 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENF--------------------------------------------------------- 118 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTC---------------------------------------------------------
T ss_pred hcCCccccEEECCCCCccccCch---------------------------------------------------------
Confidence 56677777777777766431000
Q ss_pred cccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhh-HHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHH
Q psy3611 198 NASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIG-VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLS 276 (472)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~ 276 (472)
.+..+++|++|++++|.+.... ...+ ..+++|++|++++|.++......+.
T Consensus 119 ----------------------~~~~l~~L~~L~l~~n~l~~~~l~~~~------~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 119 ----------------------PIGHLKTLKELNVAHNLIQSFKLPEYF------SNLTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp ----------------------CCTTCTTCCEEECCSSCCCCCCCCGGG------GGCTTCCEEECCSSCCCEECGGGGH
T ss_pred ----------------------hcccCCCCCEEECcCCccceecCchhh------ccCCCCCEEECCCCCCCcCCHHHhh
Confidence 0123467777777777764422 1222 1245777777777777643322221
Q ss_pred HHHHhhcccCcCCCCCccee-EEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEE
Q psy3611 277 KALHDCYESSKKEGSPLALK-VFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLN 355 (472)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~ 355 (472)
.. .. ++.+. .|++++|.+.. ++.......+|+.|++++|+++... ...+..+++|++|+
T Consensus 171 ~l-~~----------L~~l~l~L~ls~n~l~~-----~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 171 VL-HQ----------MPLLNLSLDLSLNPMNF-----IQPGAFKEIRLKELALDTNQLKSVP----DGIFDRLTSLQKIW 230 (276)
T ss_dssp HH-HT----------CTTCCEEEECCSSCCCE-----ECTTSSCSCCEEEEECCSSCCSCCC----TTTTTTCCSCCEEE
T ss_pred hh-hh----------ccccceeeecCCCcccc-----cCccccCCCcccEEECCCCceeecC----HhHhcccccccEEE
Confidence 11 10 12222 67777777764 2223334457888888888776332 23456778888888
Q ss_pred ccCCCCC
Q psy3611 356 LNDNTIT 362 (472)
Q Consensus 356 l~~n~l~ 362 (472)
+++|.+.
T Consensus 231 l~~N~~~ 237 (276)
T 2z62_A 231 LHTNPWD 237 (276)
T ss_dssp CCSSCBC
T ss_pred ccCCccc
Confidence 8888776
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=2e-16 Score=147.48 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=18.9
Q ss_pred CCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 406 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
+|+.|++++|.++.. .+..+..+++|++|++++|++..
T Consensus 201 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 201 RLKELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CEEEEECCSSCCSCC----CTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccEEECCCCceeec----CHhHhcccccccEEEccCCcccc
Confidence 455555555555542 12223445555555555555543
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=2.2e-16 Score=148.23 Aligned_cols=218 Identities=20% Similarity=0.135 Sum_probs=136.8
Q ss_pred hhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHH
Q psy3611 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85 (472)
Q Consensus 6 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~ 85 (472)
+.+++++++++++++.++. +|..+ .+++++|++++|.++ +..+ ..+..+++|++|++++|.+++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-----ip~~~--~~~l~~L~L~~N~l~--~~~~--~~~~~l~~L~~L~L~~n~l~~~~--- 71 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-----LPPDL--PKDTTILHLSENLLY--TFSL--ATLMPYTRLTQLNLDRAELTKLQ--- 71 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-----CCSCC--CTTCCEEECTTSCCS--EEEG--GGGTTCTTCCEEECTTSCCCEEE---
T ss_pred ccccCCccEEECCCCCCCc-----CCCCC--CCCCCEEEcCCCcCC--ccCH--HHhhcCCCCCEEECCCCccCccc---
Confidence 4567788888888888774 44333 267888888888875 3333 56788888888888888887642
Q ss_pred HHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCC
Q psy3611 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECS 165 (472)
Q Consensus 86 l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~ 165 (472)
. .+.+++|++|++++|.+.. ++..+..+++|++|++++|.++...+
T Consensus 72 --~-~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~~-------------------------- 117 (290)
T 1p9a_G 72 --V-DGTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSLPL-------------------------- 117 (290)
T ss_dssp --C-CSCCTTCCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCCCS--------------------------
T ss_pred --C-CCCCCcCCEEECCCCcCCc-----CchhhccCCCCCEEECCCCcCcccCH--------------------------
Confidence 1 1567888888888888874 45556677888888888887753110
Q ss_pred ccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHH
Q psy3611 166 DEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGL 245 (472)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 245 (472)
..+..+++|++|++++|.++......+
T Consensus 118 -----------------------------------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~ 144 (290)
T 1p9a_G 118 -----------------------------------------------------GALRGLGELQELYLKGNELKTLPPGLL 144 (290)
T ss_dssp -----------------------------------------------------STTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred -----------------------------------------------------HHHcCCCCCCEEECCCCCCCccChhhc
Confidence 012334678888888887754432222
Q ss_pred HHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccE
Q psy3611 246 ADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLER 325 (472)
Q Consensus 246 ~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~ 325 (472)
..+++|+.|++++|+++.... ..+..+++|+.|++++|.+.. ++..+....+|+.
T Consensus 145 ------~~l~~L~~L~L~~N~l~~l~~--------------~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 145 ------TPTPKLEKLSLANNNLTELPA--------------GLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPF 199 (290)
T ss_dssp ------TTCTTCCEEECTTSCCSCCCT--------------TTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSE
T ss_pred ------ccccCCCEEECCCCcCCccCH--------------HHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCe
Confidence 234577777777777652211 112334566777777766663 4555555566666
Q ss_pred EeCCCCCCChh-HHHHHHHHHhcCC
Q psy3611 326 VEMPQNGIYHV-GITALSDAFEENK 349 (472)
Q Consensus 326 L~l~~~~i~~~-~~~~l~~~l~~~~ 349 (472)
+++++|.+... ++..+..++...+
T Consensus 200 l~L~~Np~~C~c~~~~l~~wl~~~~ 224 (290)
T 1p9a_G 200 AFLHGNPWLCNCEILYFRRWLQDNA 224 (290)
T ss_dssp EECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred EEeCCCCccCcCccHHHHHHHHhCc
Confidence 66666665421 2233444444433
No 93
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.56 E-value=1.4e-15 Score=141.27 Aligned_cols=194 Identities=24% Similarity=0.255 Sum_probs=145.1
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
+.+++|++++|.++......+ ..+++|++|++++|.++.... ..+..+++|+.|++++|.
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~~i~~--------------~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAF------HRLTKLRLLYLNDNKLQTLPA--------------GIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSS------SSCTTCCEEECCSSCCSCCCT--------------TTTSSCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCeeCHHHh------cCCCCCCEEECCCCccCeeCh--------------hhhcCCCCCCEEECCCCc
Confidence 679999999999865543333 346799999999999863221 113457899999999999
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEc
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l 384 (472)
+... .+..+..+++|++|++++|.++... +..+..+++|++|++++|.++.... ..+..+++|+.|++
T Consensus 97 l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 97 LQAL----PIGVFDQLVNLAELRLDRNQLKSLP----PRVFDSLTKLTYLSLGYNELQSLPK----GVFDKLTSLKELRL 164 (270)
T ss_dssp CCCC----CTTTTTTCSSCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEEC
T ss_pred CCcC----CHhHcccccCCCEEECCCCccCeeC----HHHhCcCcCCCEEECCCCcCCccCH----hHccCCcccceeEe
Confidence 8863 2235677899999999999987543 3456789999999999999884321 44678899999999
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChh--HHHHHHHHHH
Q psy3611 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE--GVEEMEKLMK 458 (472)
Q Consensus 385 ~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~--~~~~l~~~l~ 458 (472)
++|.+... .+..+..+++|+.|++++|.+... .+..+..+++|+.|++++|++... +...+.++++
T Consensus 165 ~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~ 232 (270)
T 2o6q_A 165 YNNQLKRV----PEGAFDKLTELKTLKLDNNQLKRV----PEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLK 232 (270)
T ss_dssp CSSCCSCC----CTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHH
T ss_pred cCCcCcEe----ChhHhccCCCcCEEECCCCcCCcC----CHHHhccccCCCEEEecCCCeeCCCccHHHHHHHHH
Confidence 99998863 234567789999999999998863 234577889999999999997543 2334444443
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=1.8e-15 Score=140.57 Aligned_cols=200 Identities=23% Similarity=0.263 Sum_probs=153.3
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
...+.++++++.++.... . ..+++++|++++|.++... ...++.+++|+.|++++|.
T Consensus 16 ~~~~~l~~~~~~l~~ip~-~--------~~~~l~~L~l~~n~l~~~~--------------~~~~~~l~~L~~L~l~~n~ 72 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPS-N--------IPADTKKLDLQSNKLSSLP--------------SKAFHRLTKLRLLYLNDNK 72 (270)
T ss_dssp TTTTEEECTTSCCSSCCS-C--------CCTTCSEEECCSSCCSCCC--------------TTSSSSCTTCCEEECCSSC
T ss_pred CCCCEEEccCCCCCccCC-C--------CCCCCCEEECcCCCCCeeC--------------HHHhcCCCCCCEEECCCCc
Confidence 357789999998865421 1 1147999999999986332 1235667899999999999
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEc
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l 384 (472)
+..- .+..+..+++|++|++++|.++... +..+..+++|++|++++|.++.... ..+..+++|++|++
T Consensus 73 l~~i----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 73 LQTL----PAGIFKELKNLETLWVTDNKLQALP----IGVFDQLVNLAELRLDRNQLKSLPP----RVFDSLTKLTYLSL 140 (270)
T ss_dssp CSCC----CTTTTSSCTTCCEEECCSSCCCCCC----TTTTTTCSSCCEEECCSSCCCCCCT----TTTTTCTTCCEEEC
T ss_pred cCee----ChhhhcCCCCCCEEECCCCcCCcCC----HhHcccccCCCEEECCCCccCeeCH----HHhCcCcCCCEEEC
Confidence 8752 2234567899999999999988432 3456788999999999999884322 45678999999999
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCcee
Q psy3611 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 464 (472)
Q Consensus 385 ~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~ 464 (472)
++|.+.+. .+..+..+++|+.|++++|.+... .+..+..+++|++|++++|+++.... ..+..+++|+
T Consensus 141 s~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~ 208 (270)
T 2o6q_A 141 GYNELQSL----PKGVFDKLTSLKELRLYNNQLKRV----PEGAFDKLTELKTLKLDNNQLKRVPE----GAFDSLEKLK 208 (270)
T ss_dssp CSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCC
T ss_pred CCCcCCcc----CHhHccCCcccceeEecCCcCcEe----ChhHhccCCCcCEEECCCCcCCcCCH----HHhccccCCC
Confidence 99999863 234467889999999999998874 23457788999999999999875332 3456689999
Q ss_pred EEecCCC
Q psy3611 465 ALVLEDD 471 (472)
Q Consensus 465 ~L~l~~~ 471 (472)
.|+++++
T Consensus 209 ~L~l~~N 215 (270)
T 2o6q_A 209 MLQLQEN 215 (270)
T ss_dssp EEECCSS
T ss_pred EEEecCC
Confidence 9999886
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=8.2e-15 Score=136.21 Aligned_cols=182 Identities=21% Similarity=0.227 Sum_probs=141.0
Q ss_pred hcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcC
Q psy3611 222 KTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 301 (472)
Q Consensus 222 ~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~ 301 (472)
..++.|++|+++++.+.... .+ ..+++|++|++++|.+++.. .++.+++|+.|+++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~--~l------~~l~~L~~L~l~~n~l~~~~----------------~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ--GI------QYLPNVRYLALGGNKLHDIS----------------ALKELTNLTYLILT 93 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT--TG------GGCTTCCEEECTTSCCCCCG----------------GGTTCTTCCEEECT
T ss_pred ccccceeeeeeCCCCccccc--cc------ccCCCCcEEECCCCCCCCch----------------hhcCCCCCCEEECC
Confidence 34589999999999985432 12 24579999999999987421 23457899999999
Q ss_pred CCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcE
Q psy3611 302 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 381 (472)
Q Consensus 302 ~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~ 381 (472)
+|.+... .+..+..+++|++|++++|+++... +..+..+++|++|++++|.++.... ..+..+++|+.
T Consensus 94 ~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~ 161 (272)
T 3rfs_A 94 GNQLQSL----PNGVFDKLTNLKELVLVENQLQSLP----DGVFDKLTNLTYLNLAHNQLQSLPK----GVFDKLTNLTE 161 (272)
T ss_dssp TSCCCCC----CTTTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCE
T ss_pred CCccCcc----ChhHhcCCcCCCEEECCCCcCCccC----HHHhccCCCCCEEECCCCccCccCH----HHhccCccCCE
Confidence 9999863 3334678899999999999987432 3456788999999999999884221 45678899999
Q ss_pred EEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 382 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 382 L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
|++++|.+++. .+..+..+++|+.|++++|.+... .+..+..+++|++|++++|++..
T Consensus 162 L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 162 LDLSYNQLQSL----PEGVFDKLTQLKDLRLYQNQLKSV----PDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp EECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCC
T ss_pred EECCCCCcCcc----CHHHhcCCccCCEEECCCCcCCcc----CHHHHhCCcCCCEEEccCCCccc
Confidence 99999999863 234567789999999999998874 34557889999999999998754
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=1.1e-14 Score=133.73 Aligned_cols=193 Identities=20% Similarity=0.229 Sum_probs=142.0
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
...++++++++.++..... + .++++.|++++|.++.... ..++.+++|+.|++++|.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~--------~~~l~~L~L~~n~l~~~~~--------------~~~~~l~~L~~L~L~~n~ 70 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-I--------PADTEKLDLQSTGLATLSD--------------ATFRGLTKLTWLNLDYNQ 70 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-C--------CTTCCEEECTTSCCCCCCT--------------TTTTTCTTCCEEECTTSC
T ss_pred CCCeEEecCCCCccccCCC-C--------CCCCCEEEccCCCcCccCH--------------hHhcCcccCCEEECCCCc
Confidence 3567888888887544311 1 1479999999998864322 124456889999999999
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEc
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l 384 (472)
+... .+..+..+++|+.|++++|+++... +..+..+++|++|++++|.++.... ..+..+++|+.|++
T Consensus 71 l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L 138 (251)
T 3m19_A 71 LQTL----SAGVFDDLTELGTLGLANNQLASLP----LGVFDHLTQLDKLYLGGNQLKSLPS----GVFDRLTKLKELRL 138 (251)
T ss_dssp CCCC----CTTTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEEC
T ss_pred CCcc----CHhHhccCCcCCEEECCCCcccccC----hhHhcccCCCCEEEcCCCcCCCcCh----hHhccCCcccEEEC
Confidence 8863 3445678899999999999987432 3456788999999999998873221 34677899999999
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChh--HHHHHHHHHHhC
Q psy3611 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE--GVEEMEKLMKSF 460 (472)
Q Consensus 385 ~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~--~~~~l~~~l~~~ 460 (472)
++|.+++. .+..+..+++|+.|+|++|.+... .+..+..+++|++|++++|++... ....+..+++..
T Consensus 139 s~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~ 208 (251)
T 3m19_A 139 NTNQLQSI----PAGAFDKLTNLQTLSLSTNQLQSV----PHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIREN 208 (251)
T ss_dssp CSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred cCCcCCcc----CHHHcCcCcCCCEEECCCCcCCcc----CHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence 99998863 233677889999999999998863 234677889999999999998764 344566666544
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.51 E-value=9.5e-15 Score=135.77 Aligned_cols=196 Identities=18% Similarity=0.243 Sum_probs=147.8
Q ss_pred cccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCC
Q psy3611 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 305 (472)
Q Consensus 226 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l 305 (472)
.+..+++..+.+.+.. .... +++|+.|+++++.++... .++.+++|+.|++++|.+
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~------l~~L~~L~l~~~~i~~~~----------------~l~~l~~L~~L~l~~n~l 75 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNE------LNSIDQIIANNSDIKSVQ----------------GIQYLPNVRYLALGGNKL 75 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHH------HTTCCEEECTTSCCCCCT----------------TGGGCTTCCEEECTTSCC
T ss_pred HHHHHHhcCccccccc--cccc------ccceeeeeeCCCCccccc----------------ccccCCCCcEEECCCCCC
Confidence 4445556565553322 1222 258999999999986432 123468999999999999
Q ss_pred ChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcC
Q psy3611 306 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 385 (472)
Q Consensus 306 ~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~ 385 (472)
.+. ..+..+++|++|++++|.++... +..+..+++|++|++++|.++... +..+..+++|++|+++
T Consensus 76 ~~~------~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 76 HDI------SALKELTNLTYLILTGNQLQSLP----NGVFDKLTNLKELVLVENQLQSLP----DGVFDKLTNLTYLNLA 141 (272)
T ss_dssp CCC------GGGTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECC
T ss_pred CCc------hhhcCCCCCCEEECCCCccCccC----hhHhcCCcCCCEEECCCCcCCccC----HHHhccCCCCCEEECC
Confidence 862 25678999999999999988432 345678999999999999988422 1456788999999999
Q ss_pred CCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeE
Q psy3611 386 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAA 465 (472)
Q Consensus 386 ~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~ 465 (472)
+|.+++. .+..+..+++|+.|++++|.++.. .+..+..+++|++|++++|+++.... ..+..+++|+.
T Consensus 142 ~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~ 209 (272)
T 3rfs_A 142 HNQLQSL----PKGVFDKLTNLTELDLSYNQLQSL----PEGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQY 209 (272)
T ss_dssp SSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCE
T ss_pred CCccCcc----CHHHhccCccCCEEECCCCCcCcc----CHHHhcCCccCCEEECCCCcCCccCH----HHHhCCcCCCE
Confidence 9999863 234567889999999999999873 24456788999999999999875332 34567899999
Q ss_pred EecCCC
Q psy3611 466 LVLEDD 471 (472)
Q Consensus 466 L~l~~~ 471 (472)
|+++++
T Consensus 210 L~l~~N 215 (272)
T 3rfs_A 210 IWLHDN 215 (272)
T ss_dssp EECCSS
T ss_pred EEccCC
Confidence 999886
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=2.3e-14 Score=134.50 Aligned_cols=143 Identities=24% Similarity=0.340 Sum_probs=74.9
Q ss_pred CcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 292 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 292 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
+++|+.|++++|.+.+. +. +..+++|+.|++++|.++.. ..+..+++|++|++++|.++.. .
T Consensus 67 l~~L~~L~L~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~n~i~~~------~ 128 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDI-----KP-LANLKNLGWLFLDENKVKDL------SSLKDLKKLKSLSLEHNGISDI------N 128 (291)
T ss_dssp CTTCCEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCG------GGGTTCTTCCEEECTTSCCCCC------G
T ss_pred CCCCCEEEccCCccCCC-----cc-cccCCCCCEEECCCCcCCCC------hhhccCCCCCEEECCCCcCCCC------h
Confidence 34566666666655542 21 44555666666666655531 1244555666666666655521 2
Q ss_pred HhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHH
Q psy3611 372 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 451 (472)
Q Consensus 372 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~ 451 (472)
.+..+++|+.|++++|.+++ + ..+..+++|+.|++++|.+.+. +. +..+++|++|++++|.+++.
T Consensus 129 ~l~~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~~L~L~~N~l~~~-----~~-l~~l~~L~~L~L~~N~i~~l--- 193 (291)
T 1h6t_A 129 GLVHLPQLESLYLGNNKITD-----I-TVLSRLTKLDTLSLEDNQISDI-----VP-LAGLTKLQNLYLSKNHISDL--- 193 (291)
T ss_dssp GGGGCTTCCEEECCSSCCCC-----C-GGGGGCTTCSEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCBC---
T ss_pred hhcCCCCCCEEEccCCcCCc-----c-hhhccCCCCCEEEccCCccccc-----hh-hcCCCccCEEECCCCcCCCC---
Confidence 34455556666666665554 2 3345555666666666655542 22 55555666666666655432
Q ss_pred HHHHHHHhCCceeEEecCC
Q psy3611 452 EMEKLMKSFGMAAALVLED 470 (472)
Q Consensus 452 ~l~~~l~~~~~L~~L~l~~ 470 (472)
..+..+++|+.|++++
T Consensus 194 ---~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 194 ---RALAGLKNLDVLELFS 209 (291)
T ss_dssp ---GGGTTCTTCSEEEEEE
T ss_pred ---hhhccCCCCCEEECcC
Confidence 1244455566665554
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=1.4e-14 Score=127.75 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=110.7
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 334 (472)
++|++|++++|.+++.. .+..+++|+.|++++|.+... ..+..+++|++|++++|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~----------------~l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~n~l~ 101 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT----------------GIEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVT 101 (197)
T ss_dssp HTCCEEEEESSCCSCCT----------------TGGGCTTCSEEEEESCCCSCC------GGGTTCTTCCEEEEECTTCB
T ss_pred CCccEEeccCCCccChH----------------HHhcCCCCCEEEccCCCCCcc------hhhhcCCCCCEEEeECCccC
Confidence 47889999988886322 122357889999998877642 25667888999999998887
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCC-CChHHHHHHHHHhhcCCCCCEEECc
Q psy3611 335 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL-LKSAGASSIAKYLTDNTTLEDVNLT 413 (472)
Q Consensus 335 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~L~ 413 (472)
... +..+..+++|++|++++|.+++.+. ..+..+++|++|++++|. +++ ++ .+..+++|+.|+++
T Consensus 102 ~~~----~~~l~~l~~L~~L~Ls~n~i~~~~~----~~l~~l~~L~~L~L~~n~~i~~-----~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 102 SDK----IPNLSGLTSLTLLDISHSAHDDSIL----TKINTLPKVNSIDLSYNGAITD-----IM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp GGG----SCCCTTCTTCCEEECCSSBCBGGGH----HHHTTCSSCCEEECCSCTBCCC-----CG-GGGGCSSCCEEECT
T ss_pred ccc----ChhhcCCCCCCEEEecCCccCcHhH----HHHhhCCCCCEEEccCCCCccc-----cH-hhcCCCCCCEEECC
Confidence 533 3456678889999999988875332 566788889999999887 665 33 56778889999999
Q ss_pred CCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 414 CNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 414 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
+|.+.+ ++ .+..+++|++|++++|+|++
T Consensus 168 ~n~i~~-----~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 168 FDGVHD-----YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TBCCCC-----CT-TGGGCSSCCEEEECBC----
T ss_pred CCCCcC-----hH-HhccCCCCCEEEeeCcccCC
Confidence 888887 33 67788889999999888753
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=2.1e-14 Score=126.57 Aligned_cols=148 Identities=15% Similarity=0.211 Sum_probs=123.7
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 372 (472)
++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+. ..+..+++|++|++++|.++..+. ..
T Consensus 44 ~~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~n~l~~~~~----~~ 107 (197)
T 4ezg_A 44 NSLTYITLANINVTD-----LT-GIEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKI----PN 107 (197)
T ss_dssp HTCCEEEEESSCCSC-----CT-TGGGCTTCSEEEEESCCCSCC------GGGTTCTTCCEEEEECTTCBGGGS----CC
T ss_pred CCccEEeccCCCccC-----hH-HHhcCCCCCEEEccCCCCCcc------hhhhcCCCCCEEEeECCccCcccC----hh
Confidence 579999999999985 44 477899999999999987643 367789999999999999985322 56
Q ss_pred hcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCC-CCchhHHHHHHHHhcCCcccEEEccCCCCChhHHH
Q psy3611 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE-ISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 451 (472)
Q Consensus 373 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~ 451 (472)
+..+++|++|++++|.+++. .+..+..+++|+.|++++|. +++ ++ .+..+++|++|++++|++++..
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~~i~~-----~~-~l~~l~~L~~L~l~~n~i~~~~-- 175 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDS----ILTKINTLPKVNSIDLSYNGAITD-----IM-PLKTLPELKSLNIQFDGVHDYR-- 175 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGG----GHHHHTTCSSCCEEECCSCTBCCC-----CG-GGGGCSSCCEEECTTBCCCCCT--
T ss_pred hcCCCCCCEEEecCCccCcH----hHHHHhhCCCCCEEEccCCCCccc-----cH-hhcCCCCCCEEECCCCCCcChH--
Confidence 77899999999999999975 45667889999999999997 877 34 6889999999999999997632
Q ss_pred HHHHHHHhCCceeEEecCCCC
Q psy3611 452 EMEKLMKSFGMAAALVLEDDE 472 (472)
Q Consensus 452 ~l~~~l~~~~~L~~L~l~~~~ 472 (472)
.+..+++|+.|+++++.
T Consensus 176 ----~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 176 ----GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ----TGGGCSSCCEEEECBC-
T ss_pred ----HhccCCCCCEEEeeCcc
Confidence 56779999999999873
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=2.9e-14 Score=133.77 Aligned_cols=171 Identities=23% Similarity=0.283 Sum_probs=138.6
Q ss_pred cCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCC
Q psy3611 223 TGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 302 (472)
Q Consensus 223 ~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~ 302 (472)
.++.|++|++++|.+.... .+ ..+++|++|++++|.+++... +..+++|+.|++++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~--~~------~~l~~L~~L~L~~n~l~~~~~----------------l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ--GI------QYLPNVTKLFLNGNKLTDIKP----------------LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT--TG------GGCTTCCEEECCSSCCCCCGG----------------GTTCTTCCEEECCS
T ss_pred hcCcccEEEccCCCcccCh--hH------hcCCCCCEEEccCCccCCCcc----------------cccCCCCCEEECCC
Confidence 4578999999999985442 12 245799999999999875321 34468999999999
Q ss_pred CCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEE
Q psy3611 303 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 382 (472)
Q Consensus 303 ~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L 382 (472)
|.+.+ ++ .+..+++|++|++++|+++.. ..+..+++|+.|++++|.++.. ..+..+++|+.|
T Consensus 100 n~l~~-----~~-~l~~l~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L 161 (291)
T 1h6t_A 100 NKVKD-----LS-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTL 161 (291)
T ss_dssp SCCCC-----GG-GGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEE
T ss_pred CcCCC-----Ch-hhccCCCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEE
Confidence 99986 33 377899999999999999843 3577899999999999999842 467789999999
Q ss_pred EcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 383 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 383 ~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
++++|.+.+. +. +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 162 ~L~~N~l~~~-----~~-l~~l~~L~~L~L~~N~i~~-----l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 162 SLEDNQISDI-----VP-LAGLTKLQNLYLSKNHISD-----LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCB-----CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred EccCCccccc-----hh-hcCCCccCEEECCCCcCCC-----Ch-hhccCCCCCEEECcCCcccC
Confidence 9999999873 22 7788999999999999987 33 47889999999999998754
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=3.9e-14 Score=129.99 Aligned_cols=176 Identities=19% Similarity=0.232 Sum_probs=137.8
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 334 (472)
+..++++++++.++.. +..+ +++++.|++++|.+... .+..+..+++|++|++++|.++
T Consensus 14 ~~~~~l~~~~~~l~~~---------------p~~~--~~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 72 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSV---------------PSGI--PADTEKLDLQSTGLATL----SDATFRGLTKLTWLNLDYNQLQ 72 (251)
T ss_dssp GGGTEEECTTCCCSSC---------------CSCC--CTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCeEEecCCCCcccc---------------CCCC--CCCCCEEEccCCCcCcc----CHhHhcCcccCCEEECCCCcCC
Confidence 3578899998887522 1112 25799999999999863 3346778999999999999998
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcC
Q psy3611 335 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC 414 (472)
Q Consensus 335 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~ 414 (472)
... +..+..+++|++|++++|.++... +..+..+++|++|++++|.++.. .+..+..+++|+.|++++
T Consensus 73 ~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 73 TLS----AGVFDDLTELGTLGLANNQLASLP----LGVFDHLTQLDKLYLGGNQLKSL----PSGVFDRLTKLKELRLNT 140 (251)
T ss_dssp CCC----TTTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCS
T ss_pred ccC----HhHhccCCcCCEEECCCCcccccC----hhHhcccCCCCEEEcCCCcCCCc----ChhHhccCCcccEEECcC
Confidence 532 455778999999999999998422 14567889999999999999863 234467789999999999
Q ss_pred CCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 415 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 415 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
|.++.. .+..+..+++|++|++++|+++.... ..+..+++|+.|++++|
T Consensus 141 N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 141 NQLQSI----PAGAFDKLTNLQTLSLSTNQLQSVPH----GAFDRLGKLQTITLFGN 189 (251)
T ss_dssp SCCCCC----CTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSC
T ss_pred CcCCcc----CHHHcCcCcCCCEEECCCCcCCccCH----HHHhCCCCCCEEEeeCC
Confidence 999873 23367889999999999999875432 34566899999999987
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=1.2e-13 Score=142.09 Aligned_cols=168 Identities=23% Similarity=0.276 Sum_probs=86.3
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
+.|++|++++|.+. ..-....+++|+.|+|++|.++.... ++.+++|+.|++++|.
T Consensus 43 ~~L~~L~l~~n~i~--------~l~~l~~l~~L~~L~Ls~N~l~~~~~----------------l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 43 NSIDQIIANNSDIK--------SVQGIQYLPNVTKLFLNGNKLTDIKP----------------LTNLKNLGWLFLDENK 98 (605)
T ss_dssp TTCCCCBCTTCCCC--------CCTTGGGCTTCCEEECTTSCCCCCGG----------------GGGCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCC--------CChHHccCCCCCEEEeeCCCCCCChh----------------hccCCCCCEEECcCCC
Confidence 55666666655541 11122334556666666665543211 1224556666666665
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEc
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l 384 (472)
+.. ++ .+..+++|+.|++++|.+... ..+..+++|+.|+|++|.+... ..+..+++|+.|+|
T Consensus 99 l~~-----l~-~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 99 IKD-----LS-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSL 160 (605)
T ss_dssp CCC-----CT-TSTTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEEC
T ss_pred CCC-----Ch-hhccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEEC
Confidence 553 11 344555666666666655531 2344555666666666655521 34455556666666
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 385 ~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
++|.+.+. +. +..+++|+.|+|++|.|.. + ..+..+++|+.|++++|++.
T Consensus 161 s~N~l~~~-----~~-l~~l~~L~~L~Ls~N~i~~-----l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 161 EDNQISDI-----VP-LAGLTKLQNLYLSKNHISD-----L-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CSSCCCCC-----GG-GTTCTTCCEEECCSSCCCB-----C-GGGTTCTTCSEEECCSEEEE
T ss_pred cCCcCCCc-----hh-hccCCCCCEEECcCCCCCC-----C-hHHccCCCCCEEEccCCcCc
Confidence 66655542 11 4555666666666665554 2 23555556666666665543
No 104
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.40 E-value=1.5e-14 Score=131.76 Aligned_cols=197 Identities=16% Similarity=0.127 Sum_probs=146.0
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCC-CChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCC-
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG-LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR- 302 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~- 302 (472)
+.+++|++++|.++......+ ..+++|++|++++|. ++.... ..+..+++|+.|++++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~------~~l~~L~~L~l~~n~~l~~i~~--------------~~f~~l~~L~~L~l~~~ 90 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAF------SNLPNISRIYVSIDVTLQQLES--------------HSFYNLSKVTHIEIRNT 90 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTT------TTCTTCCEEEEECCSSCCEECT--------------TTEESCTTCCEEEEEEE
T ss_pred CcccEEEEeCCcceEECHHHc------cCCCCCcEEeCCCCCCcceeCH--------------hHcCCCcCCcEEECCCC
Confidence 589999999999976544333 246799999999997 753221 1234578999999998
Q ss_pred CCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCcc---EEEccCC-CCCcccHHHHHHHhcCCCC
Q psy3611 303 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLR---HLNLNDN-TITYKGAIPLGQALSKLPS 378 (472)
Q Consensus 303 ~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~---~L~l~~n-~l~~~~~~~l~~~l~~~~~ 378 (472)
|.+... -+.++..+++|++|++++|+++. ++. +..+++|+ +|++++| .++.... ..+..+++
T Consensus 91 n~l~~i----~~~~f~~l~~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~----~~~~~l~~ 156 (239)
T 2xwt_C 91 RNLTYI----DPDALKELPLLKFLGIFNTGLKM-----FPD-LTKVYSTDIFFILEITDNPYMTSIPV----NAFQGLCN 156 (239)
T ss_dssp TTCCEE----CTTSEECCTTCCEEEEEEECCCS-----CCC-CTTCCBCCSEEEEEEESCTTCCEECT----TTTTTTBS
T ss_pred CCeeEc----CHHHhCCCCCCCEEeCCCCCCcc-----ccc-cccccccccccEEECCCCcchhhcCc----ccccchhc
Confidence 888852 22356778999999999999874 233 66778888 9999999 8874221 45778899
Q ss_pred Cc-EEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCC-CCchhHHHHHHHHhcC-CcccEEEccCCCCChhHHHHHHH
Q psy3611 379 LA-ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE-ISVQGGLDLVKAMKNK-TKLKQINVSENQFGEEGVEEMEK 455 (472)
Q Consensus 379 L~-~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~-~~L~~L~l~~n~i~~~~~~~l~~ 455 (472)
|+ .|++++|.+.. ++......++|+.|++++|. ++.. -+..+..+ ++|++|++++|+++.....
T Consensus 157 L~~~L~l~~n~l~~-----i~~~~~~~~~L~~L~L~~n~~l~~i----~~~~~~~l~~~L~~L~l~~N~l~~l~~~---- 223 (239)
T 2xwt_C 157 ETLTLKLYNNGFTS-----VQGYAFNGTKLDAVYLNKNKYLTVI----DKDAFGGVYSGPSLLDVSQTSVTALPSK---- 223 (239)
T ss_dssp SEEEEECCSCCCCE-----ECTTTTTTCEEEEEECTTCTTCCEE----CTTTTTTCSBCCSEEECTTCCCCCCCCT----
T ss_pred ceeEEEcCCCCCcc-----cCHhhcCCCCCCEEEcCCCCCcccC----CHHHhhccccCCcEEECCCCccccCChh----
Confidence 99 99999999985 44332233789999999994 8763 13456778 8999999999998643211
Q ss_pred HHHhCCceeEEecCCC
Q psy3611 456 LMKSFGMAAALVLEDD 471 (472)
Q Consensus 456 ~l~~~~~L~~L~l~~~ 471 (472)
..++|+.|++++.
T Consensus 224 ---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 ---GLEHLKELIARNT 236 (239)
T ss_dssp ---TCTTCSEEECTTC
T ss_pred ---HhccCceeeccCc
Confidence 4778888888764
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=2.9e-14 Score=131.68 Aligned_cols=170 Identities=21% Similarity=0.255 Sum_probs=129.4
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCC
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 303 (472)
+..+..++++++.+++.. .+.. +++|++|++++|.++... .+..+++|+.|++++|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~------l~~L~~L~l~~n~i~~l~----------------~l~~l~~L~~L~L~~N 73 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKE------LSGVQNFNGDNSNIQSLA----------------GMQFFTNLKELHLSHN 73 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHH------HTTCSEEECTTSCCCCCT----------------TGGGCTTCCEEECCSS
T ss_pred HHHHHHHHhcCCCccccc--chhh------cCcCcEEECcCCCcccch----------------HHhhCCCCCEEECCCC
Confidence 356777888888886544 2333 258999999999887432 1233578999999999
Q ss_pred CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEE
Q psy3611 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383 (472)
Q Consensus 304 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 383 (472)
.+.+. +. +..+++|+.|++++|+++... .+.. ++|++|++++|.++. . ..+..+++|+.|+
T Consensus 74 ~i~~~-----~~-l~~l~~L~~L~L~~N~l~~l~------~~~~-~~L~~L~L~~N~l~~--~----~~l~~l~~L~~L~ 134 (263)
T 1xeu_A 74 QISDL-----SP-LKDLTKLEELSVNRNRLKNLN------GIPS-ACLSRLFLDNNELRD--T----DSLIHLKNLEILS 134 (263)
T ss_dssp CCCCC-----GG-GTTCSSCCEEECCSSCCSCCT------TCCC-SSCCEEECCSSCCSB--S----GGGTTCTTCCEEE
T ss_pred ccCCC-----hh-hccCCCCCEEECCCCccCCcC------cccc-CcccEEEccCCccCC--C----hhhcCcccccEEE
Confidence 98863 33 778899999999999987431 1223 789999999999884 2 3577889999999
Q ss_pred cCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChh
Q psy3611 384 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 448 (472)
Q Consensus 384 l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 448 (472)
+++|.+++ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|+++..
T Consensus 135 Ls~N~i~~-----~~-~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 135 IRNNKLKS-----IV-MLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTSCCCB-----CG-GGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCcCCC-----Ch-HHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCCCcccCC
Confidence 99999987 32 577889999999999999873 5677888999999999987543
No 106
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.40 E-value=1.5e-14 Score=131.76 Aligned_cols=198 Identities=15% Similarity=0.157 Sum_probs=122.8
Q ss_pred CCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCcc-ccchhHHHHHHHhhcCCcccEEECcC-CccCcchHHHHH
Q psy3611 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL-LKSAGASSIAKYLTDNTTLEDVNLTC-NEISVQGGLDLV 115 (472)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~-l~~~~~~~l~~~l~~~~~L~~L~l~~-~~i~~~~~~~l~ 115 (472)
++|++|++++|.+... .+ ..+..+++|++|++++|. ++... +..+..+++|++|++++ |.++.. -+
T Consensus 31 ~~l~~L~l~~n~l~~i--~~--~~~~~l~~L~~L~l~~n~~l~~i~----~~~f~~l~~L~~L~l~~~n~l~~i----~~ 98 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTI--PS--HAFSNLPNISRIYVSIDVTLQQLE----SHSFYNLSKVTHIEIRNTRNLTYI----DP 98 (239)
T ss_dssp TTCCEEEEESCCCSEE--CT--TTTTTCTTCCEEEEECCSSCCEEC----TTTEESCTTCCEEEEEEETTCCEE----CT
T ss_pred CcccEEEEeCCcceEE--CH--HHccCCCCCcEEeCCCCCCcceeC----HhHcCCCcCCcEEECCCCCCeeEc----CH
Confidence 3788888888877422 22 356777888888888886 66531 23456677888888887 777642 12
Q ss_pred HHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCC
Q psy3611 116 KAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNH 195 (472)
Q Consensus 116 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (472)
..+..+++|++|++++|.+..- +.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~l-p~------------------------------------------------------- 122 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMF-PD------------------------------------------------------- 122 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSC-CC-------------------------------------------------------
T ss_pred HHhCCCCCCCEEeCCCCCCccc-cc-------------------------------------------------------
Confidence 3456677888888888766531 00
Q ss_pred cccccccccCCCCcccccchhhhhhhhcCCccc---EEeCCCC-CCChhhHHHHHHHHhccCCCcce-EEEeeCCCCChh
Q psy3611 196 SHNASNQSHNNSNQSHNTSNQSHMSLKTGARLV---ELDLSDN-AFGPIGVEGLADLLRSSCCFALE-ELKLNNNGLGIT 270 (472)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~l~~~~~~~l~~~l~~~~~~~L~-~L~l~~~~i~~~ 270 (472)
+..++.|+ +|++++| .++......+ ..+++|+ +|++++|.++..
T Consensus 123 -------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~------~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 123 -------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAF------QGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp -------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTT------TTTBSSEEEEECCSCCCCEE
T ss_pred -------------------------cccccccccccEEECCCCcchhhcCcccc------cchhcceeEEEcCCCCCccc
Confidence 01123444 7888877 6654433222 2346788 888888877532
Q ss_pred HHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC-CChhhHHHHHHHHhcC-CCccEEeCCCCCCChhHHHHHHHHHhcC
Q psy3611 271 GCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR-LENEGAKMLAAVFKKL-KTLERVEMPQNGIYHVGITALSDAFEEN 348 (472)
Q Consensus 271 ~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~~-~~L~~L~l~~~~i~~~~~~~l~~~l~~~ 348 (472)
.. .....++|+.|++++|. +... -+.++..+ ++|+.|++++|+++.. +.. .+
T Consensus 172 ~~---------------~~~~~~~L~~L~L~~n~~l~~i----~~~~~~~l~~~L~~L~l~~N~l~~l-----~~~--~~ 225 (239)
T 2xwt_C 172 QG---------------YAFNGTKLDAVYLNKNKYLTVI----DKDAFGGVYSGPSLLDVSQTSVTAL-----PSK--GL 225 (239)
T ss_dssp CT---------------TTTTTCEEEEEECTTCTTCCEE----CTTTTTTCSBCCSEEECTTCCCCCC-----CCT--TC
T ss_pred CH---------------hhcCCCCCCEEEcCCCCCcccC----CHHHhhccccCCcEEECCCCccccC-----Chh--Hh
Confidence 21 11122578888888884 7642 12345667 8899999998888732 221 46
Q ss_pred CCccEEEccCCC
Q psy3611 349 KNLRHLNLNDNT 360 (472)
Q Consensus 349 ~~L~~L~l~~n~ 360 (472)
++|+.|+++++.
T Consensus 226 ~~L~~L~l~~~~ 237 (239)
T 2xwt_C 226 EHLKELIARNTW 237 (239)
T ss_dssp TTCSEEECTTC-
T ss_pred ccCceeeccCcc
Confidence 788888887763
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.40 E-value=1.9e-13 Score=140.75 Aligned_cols=151 Identities=21% Similarity=0.200 Sum_probs=104.3
Q ss_pred hhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEc
Q psy3611 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300 (472)
Q Consensus 221 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l 300 (472)
+..+++|++|++++|.+..... + ..+++|+.|+|++|.++.. +.++.+++|+.|++
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~--l------~~l~~L~~L~Ls~N~l~~l----------------~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP--L------TNLKNLGWLFLDENKIKDL----------------SSLKDLKKLKSLSL 116 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG--G------GGCTTCCEEECCSSCCCCC----------------TTSTTCTTCCEEEC
T ss_pred HccCCCCCEEEeeCCCCCCChh--h------ccCCCCCEEECcCCCCCCC----------------hhhccCCCCCEEEe
Confidence 4566788888888887754432 1 3456788888888877542 13455677888888
Q ss_pred CCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCc
Q psy3611 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 380 (472)
Q Consensus 301 ~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~ 380 (472)
++|.+.. + ..+..+++|+.|++++|.+... ..+..+++|+.|+|++|.+.... .+..+++|+
T Consensus 117 s~N~l~~-----l-~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~------~l~~l~~L~ 178 (605)
T 1m9s_A 117 EHNGISD-----I-NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIV------PLAGLTKLQ 178 (605)
T ss_dssp TTSCCCC-----C-GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCCG------GGTTCTTCC
T ss_pred cCCCCCC-----C-ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCch------hhccCCCCC
Confidence 8887775 2 2356777888888888877632 35667788888888888777321 166777888
Q ss_pred EEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 381 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 381 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
.|+|++|.+.+ + ..+..+++|+.|+|++|.+..
T Consensus 179 ~L~Ls~N~i~~-----l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 179 NLYLSKNHISD-----L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp EEECCSSCCCB-----C-GGGTTCTTCSEEECCSEEEEC
T ss_pred EEECcCCCCCC-----C-hHHccCCCCCEEEccCCcCcC
Confidence 88888888775 3 346677888888888877655
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=1.3e-13 Score=127.30 Aligned_cols=150 Identities=21% Similarity=0.251 Sum_probs=111.3
Q ss_pred hhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEc
Q psy3611 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300 (472)
Q Consensus 221 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l 300 (472)
+..++.|++|++++|.++... .+ ..+++|++|++++|.+++... +..+++|+.|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~--~l------~~l~~L~~L~L~~N~i~~~~~----------------l~~l~~L~~L~L 92 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA--GM------QFFTNLKELHLSHNQISDLSP----------------LKDLTKLEELSV 92 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT--TG------GGCTTCCEEECCSSCCCCCGG----------------GTTCSSCCEEEC
T ss_pred hhhcCcCcEEECcCCCcccch--HH------hhCCCCCEEECCCCccCCChh----------------hccCCCCCEEEC
Confidence 345588899999998885443 22 235689999999988874321 244678999999
Q ss_pred CCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCc
Q psy3611 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 380 (472)
Q Consensus 301 ~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~ 380 (472)
++|.+.+ ++. +.. ++|+.|++++|+++.. ..+..+++|+.|++++|.+++. ..+..+++|+
T Consensus 93 ~~N~l~~-----l~~-~~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~~~------~~l~~l~~L~ 153 (263)
T 1xeu_A 93 NRNRLKN-----LNG-IPS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKSI------VMLGFLSKLE 153 (263)
T ss_dssp CSSCCSC-----CTT-CCC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCCBC------GGGGGCTTCC
T ss_pred CCCccCC-----cCc-ccc-CcccEEEccCCccCCC------hhhcCcccccEEECCCCcCCCC------hHHccCCCCC
Confidence 9998875 222 122 7899999999988743 2477788999999999988842 3567788999
Q ss_pred EEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 381 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 381 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
.|++++|.+.+. ..+..+++|+.|++++|.+..
T Consensus 154 ~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 154 VLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp EEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEEC
T ss_pred EEECCCCcCcch------HHhccCCCCCEEeCCCCcccC
Confidence 999999988863 556778889999999888765
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=9.7e-13 Score=134.03 Aligned_cols=167 Identities=20% Similarity=0.216 Sum_probs=122.9
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
+.|++|++++|.++... ..+++|+.|++++|.++... . ++ .+|+.|++++|.
T Consensus 80 ~~L~~L~Ls~N~l~~ip----------~~l~~L~~L~Ls~N~l~~ip---------------~-l~--~~L~~L~Ls~N~ 131 (571)
T 3cvr_A 80 PQITVLEITQNALISLP----------ELPASLEYLDACDNRLSTLP---------------E-LP--ASLKHLDVDNNQ 131 (571)
T ss_dssp TTCSEEECCSSCCSCCC----------CCCTTCCEEECCSSCCSCCC---------------C-CC--TTCCEEECCSSC
T ss_pred CCCCEEECcCCCCcccc----------cccCCCCEEEccCCCCCCcc---------------h-hh--cCCCEEECCCCc
Confidence 57889999999886433 12468999999999886321 1 22 278999999998
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEc
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l 384 (472)
+.. ++. .+++|+.|++++|.++.. +. .+++|++|++++|.++. ++. +. ++|+.|++
T Consensus 132 l~~-----lp~---~l~~L~~L~Ls~N~l~~l-----p~---~l~~L~~L~Ls~N~L~~-----lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 132 LTM-----LPE---LPALLEYINADNNQLTML-----PE---LPTSLEVLSVRNNQLTF-----LPE-LP--ESLEALDV 187 (571)
T ss_dssp CSC-----CCC---CCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSC-----CCC-CC--TTCCEEEC
T ss_pred CCC-----CCC---cCccccEEeCCCCccCcC-----CC---cCCCcCEEECCCCCCCC-----cch-hh--CCCCEEEC
Confidence 875 444 578999999999988732 22 46789999999998873 222 33 78999999
Q ss_pred CCCCCChHHHHHHHHHhhcCCCC-------CEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHH
Q psy3611 385 GDCLLKSAGASSIAKYLTDNTTL-------EDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456 (472)
Q Consensus 385 ~~~~i~~~~~~~l~~~l~~~~~L-------~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 456 (472)
++|.++. ++. +.. +| +.|+|++|.|+. ++..+..+++|++|++++|++++.....+...
T Consensus 188 s~N~L~~-----lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 188 STNLLES-----LPA-VPV--RNHHSEETEIFFRCRENRITH-----IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CSSCCSS-----CCC-CC----------CCEEEECCSSCCCC-----CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred cCCCCCc-----hhh-HHH--hhhcccccceEEecCCCccee-----cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 9998885 443 332 55 999999999886 67777788999999999999987766666553
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=2e-15 Score=154.37 Aligned_cols=36 Identities=11% Similarity=0.226 Sum_probs=24.5
Q ss_pred cCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC
Q psy3611 92 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 132 (472)
Q Consensus 92 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 132 (472)
.+++|+.|+|++|.+. .+|..+..+++|+.|++++|
T Consensus 347 ~~~~L~~L~Ls~n~L~-----~Lp~~i~~l~~L~~L~l~~n 382 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-----VLQSELESCKELQELEPENK 382 (567)
T ss_dssp TTTTSSSCCCCHHHHH-----HHHHHHHHHHHHHHHCTTCH
T ss_pred cCccceeccCChhhHH-----hhHHHHHHHHHHHHhccccc
Confidence 3566777777777665 47777777777777777544
No 111
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.35 E-value=2.1e-12 Score=124.14 Aligned_cols=218 Identities=16% Similarity=0.147 Sum_probs=147.3
Q ss_pred CcccEEeCCCCCCC-hh---hHHHHHHHHhccCCCcceEEEeeCCCCChhHH-----HHHHHHHHhhcccCcCCCCCcce
Q psy3611 225 ARLVELDLSDNAFG-PI---GVEGLADLLRSSCCFALEELKLNNNGLGITGC-----KLLSKALHDCYESSKKEGSPLAL 295 (472)
Q Consensus 225 ~~L~~L~l~~~~l~-~~---~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~-----~~l~~~l~~~~~~~~~~~~~~~L 295 (472)
.+++.|.+..+... .. ..+.+..... .+++|+.|.+......+... ..+...+. .+|+|
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~--~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~----------~~P~L 174 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKE--KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD----------AMPLL 174 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHH--HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH----------TCTTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhh--hcchhhheeecCcchhhcccccccccCHHHHHh----------cCCCC
Confidence 46778877765543 11 2233322121 23589999987653321000 01222222 25789
Q ss_pred eEEEcCCCC-CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccC--CC-CCcccHHHHHH
Q psy3611 296 KVFIAGRNR-LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLND--NT-ITYKGAIPLGQ 371 (472)
Q Consensus 296 ~~L~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~--n~-l~~~~~~~l~~ 371 (472)
+.|.++++. +. ++. + ..++|++|++..|.+...++..+.. ..+|+|++|+|+. +. .++.++..+..
T Consensus 175 ~~L~L~g~~~l~------l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~--~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 175 NNLKIKGTNNLS------IGK-K-PRPNLKSLEIISGGLPDSVVEDILG--SDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp CEEEEECCBTCB------CCS-C-BCTTCSEEEEECSBCCHHHHHHHHH--SBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred cEEEEeCCCCce------ecc-c-cCCCCcEEEEecCCCChHHHHHHHH--ccCCCCcEEEEeccccccccchhHHHHHH
Confidence 999998873 22 222 2 4789999999999998877554432 3689999999864 22 22222323333
Q ss_pred Hhc--CCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhH
Q psy3611 372 ALS--KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 449 (472)
Q Consensus 372 ~l~--~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~ 449 (472)
.+. .+|+|++|++.+|.+++.++..++.+ ..+++|+.|+|+.|.+++.|+..++..+..+++|++|+++.|.|++.+
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 343 47899999999999998776666554 457899999999999999999889888888999999999999999999
Q ss_pred HHHHHHHHHhCCceeEEecCC
Q psy3611 450 VEEMEKLMKSFGMAAALVLED 470 (472)
Q Consensus 450 ~~~l~~~l~~~~~L~~L~l~~ 470 (472)
++.+.+++ -..++++.
T Consensus 324 ~~~l~~al-----g~~~~~~~ 339 (362)
T 2ra8_A 324 KKELQKSL-----PMKIDVSD 339 (362)
T ss_dssp HHHHHHHC-----CSEEECCS
T ss_pred HHHHHHHc-----CCEEEecC
Confidence 99888754 34466654
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.32 E-value=1.8e-12 Score=132.04 Aligned_cols=75 Identities=25% Similarity=0.430 Sum_probs=43.3
Q ss_pred CCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHH
Q psy3611 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 117 (472)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 117 (472)
.+|++|++++|.++. +| ..+ .++|++|++++|.++. ++ ..+++|++|++++|.++. ++.
T Consensus 59 ~~L~~L~Ls~n~L~~---lp--~~l--~~~L~~L~Ls~N~l~~-----ip---~~l~~L~~L~Ls~N~l~~-----ip~- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS---LP--DNL--PPQITVLEITQNALIS-----LP---ELPASLEYLDACDNRLST-----LPE- 117 (571)
T ss_dssp TTCSEEECCSSCCSC---CC--SCC--CTTCSEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSC-----CCC-
T ss_pred CCccEEEeCCCCCCc---cC--HhH--cCCCCEEECcCCCCcc-----cc---cccCCCCEEEccCCCCCC-----cch-
Confidence 467777777766642 33 212 2567777777776663 22 235667777777776664 232
Q ss_pred hhhCCCccEEEecCCcCC
Q psy3611 118 MKNKTKLKQINVSENQFG 135 (472)
Q Consensus 118 l~~~~~L~~L~l~~~~i~ 135 (472)
+.. +|++|++++|.++
T Consensus 118 l~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLT 133 (571)
T ss_dssp CCT--TCCEEECCSSCCS
T ss_pred hhc--CCCEEECCCCcCC
Confidence 222 6777777776654
No 113
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.31 E-value=5.6e-12 Score=121.15 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=36.4
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
++|+.|++.+|.+.+.+...+..+ ..+++|++|+++.|.+++.|...++..+..+++|+.|++++|.++++++..+.+
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 445555555554444332222211 123455555555555555554444444444555555555555555544444433
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=1.8e-12 Score=108.52 Aligned_cols=133 Identities=18% Similarity=0.174 Sum_probs=75.6
Q ss_pred CCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHH
Q psy3611 321 KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400 (472)
Q Consensus 321 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 400 (472)
+++++|++++|.+++. .++..+..+++|++|++++|.++.. ..+..+++|+.|++++|.+++. ++..
T Consensus 17 ~~l~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~~ 83 (149)
T 2je0_A 17 SDVKELVLDNSRSNEG---KLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEVL 83 (149)
T ss_dssp GGCSEEECTTCBCBTT---BCCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THHH
T ss_pred ccCeEEEccCCcCChh---HHHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHHH
Confidence 4566666666655421 1223344556666666666666532 3455566666777766666653 3444
Q ss_pred hhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCC
Q psy3611 401 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 470 (472)
Q Consensus 401 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 470 (472)
+..+++|+.|++++|.+++.. .+..+..+++|++|++++|+++.... .....+..+++|+.|++++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTBC
T ss_pred hhhCCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCCC
Confidence 455666777777777666521 12556666777777777776654321 1123455577777777653
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=1.6e-12 Score=117.44 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=103.8
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 372 (472)
++|+.|++++|.+... .+..+..+++|+.|++++|+++... ...+..+++|+.|++++|.++... ...
T Consensus 40 ~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~i~----~~~~~~l~~L~~L~Ls~N~l~~l~----~~~ 107 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL----EPGVFDSLINLKELYLGSNQLGALP----VGVFDSLTQLTVLDLGTNQLTVLP----SAV 107 (229)
T ss_dssp TTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCC----TTT
T ss_pred CCCCEEEcCCCccCcc----CHHHhhCccCCcEEECCCCCCCCcC----hhhcccCCCcCEEECCCCcCCccC----hhH
Confidence 5677777777777652 3445667788888888888876322 234567888888888888887321 134
Q ss_pred hcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChh--HH
Q psy3611 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE--GV 450 (472)
Q Consensus 373 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~--~~ 450 (472)
+..+++|+.|++++|.+.. ++..+..+++|+.|++++|.+... ....+..+++|++|++++|++... ..
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 178 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKSI----PHGAFDRLSSLTHAYLFGNPWDCECRDI 178 (229)
T ss_dssp TTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred hCcchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCCcc----CHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence 5678888888888888875 666677788888888888888763 224567788888888888887654 34
Q ss_pred HHHHHHHHhC
Q psy3611 451 EEMEKLMKSF 460 (472)
Q Consensus 451 ~~l~~~l~~~ 460 (472)
..+..++...
T Consensus 179 ~~l~~~~~~~ 188 (229)
T 3e6j_A 179 MYLRNWVADH 188 (229)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 5555555543
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.28 E-value=3.4e-12 Score=114.39 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=104.8
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 372 (472)
++++.|++++|.+... .+..+..+++|+.|++++|+++... +..+.++++|++|++++|.++.... ..
T Consensus 32 ~~l~~L~l~~n~i~~i----~~~~~~~l~~L~~L~Ls~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~l~~----~~ 99 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVI----PPGAFSPYKKLRRIDLSNNQISELA----PDAFQGLRSLNSLVLYGNKITELPK----SL 99 (220)
T ss_dssp TTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECCSSCCCEEC----TTTTTTCSSCCEEECCSSCCCCCCT----TT
T ss_pred cCCCEEECCCCcCCCc----CHhHhhCCCCCCEEECCCCcCCCcC----HHHhhCCcCCCEEECCCCcCCccCH----hH
Confidence 4688888888888752 2235667788888888888887432 4567778888888888888873211 34
Q ss_pred hcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh-hHHH
Q psy3611 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE-EGVE 451 (472)
Q Consensus 373 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~-~~~~ 451 (472)
+..+++|+.|++++|.+... .+..+..+++|+.|+|++|.++.. .+..+..+++|++|++++|++.. -...
T Consensus 100 f~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANKINCL----RVDAFQDLHNLNLLSLYDNKLQTI----AKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred ccCCCCCCEEECCCCCCCEe----CHHHcCCCCCCCEEECCCCcCCEE----CHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 56788888888888888763 345667778888889888888763 23456778888889998888643 2334
Q ss_pred HHHHHHHhC
Q psy3611 452 EMEKLMKSF 460 (472)
Q Consensus 452 ~l~~~l~~~ 460 (472)
.+..++...
T Consensus 172 ~l~~~l~~~ 180 (220)
T 2v9t_B 172 WLADYLHTN 180 (220)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 555555543
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=2.1e-12 Score=108.18 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=95.2
Q ss_pred CcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 292 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 292 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
+++++.|++++|.+.+. .++..+..+++|+.|++++|.++.. ..+..+++|++|++++|.++.. ++.
T Consensus 16 ~~~l~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEG---KLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBTT---BCCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THH
T ss_pred CccCeEEEccCCcCChh---HHHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHH
Confidence 35788888888877621 1455556778888888888888733 4566788888999988888742 335
Q ss_pred HhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEcc
Q psy3611 372 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVS 441 (472)
Q Consensus 372 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 441 (472)
.+..+++|++|++++|.+++.. .+..+..+++|+.|++++|.++.... .....+..+++|++|+++
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred HhhhCCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCC
Confidence 5566888899999988888621 23667788889999999888776321 001467778888888875
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.25 E-value=2e-12 Score=115.93 Aligned_cols=114 Identities=22% Similarity=0.289 Sum_probs=64.5
Q ss_pred HhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHH
Q psy3611 317 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396 (472)
Q Consensus 317 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~ 396 (472)
+..+++|+.|++++|+++... +..+.++++|++|++++|.++... +..+..+++|++|++++|.+...
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~---- 120 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIE----EGAFEGASGVNEILLTSNRLENVQ----HKMFKGLESLKTLMLRSNRITCV---- 120 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCCCC----GGGGTTCSSCCEEECTTSCCCCB----
T ss_pred hccCCCCCEEECCCCcCCEEC----HHHhCCCCCCCEEECCCCccCccC----HhHhcCCcCCCEEECCCCcCCeE----
Confidence 345566666666666655321 224555666666666666665221 13455566666666666666542
Q ss_pred HHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 397 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 397 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
.+..+..+++|+.|+|++|.++.. .+..+..+++|++|++++|++.
T Consensus 121 ~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 121 GNDSFIGLSSVRLLSLYDNQITTV----APGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTSSTTCTTCSEEECTTSCCCCB----CTTTTTTCTTCCEEECCSCCEE
T ss_pred CHhHcCCCccCCEEECCCCcCCEE----CHHHhcCCCCCCEEEecCcCCc
Confidence 234455566666666666666552 2445556666666666666653
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=7.6e-13 Score=113.32 Aligned_cols=136 Identities=19% Similarity=0.226 Sum_probs=68.9
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 372 (472)
++|+.|++++|.+.+. .++..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+... ++..
T Consensus 24 ~~L~~L~l~~n~l~~~---~i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~~~ 90 (168)
T 2ell_A 24 AAVRELVLDNCKSNDG---KIEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LDML 90 (168)
T ss_dssp TSCSEEECCSCBCBTT---BCSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CCHH
T ss_pred ccCCEEECCCCCCChh---hHHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HHHH
Confidence 4455555555555411 1333344555666666666655522 3444556666666666665531 1233
Q ss_pred hcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCC
Q psy3611 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445 (472)
Q Consensus 373 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 445 (472)
+..+++|+.|++++|.+++.. ....+..+++|+.|++++|.+..... .....+..+++|++|++++|.+
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~---~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDIS---TLEPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSG---GGGGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTS
T ss_pred HhhCCCCCEEeccCCccCcch---hHHHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCCh
Confidence 334566666666666665411 01344555666666666665554210 0012455566666666666654
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=3.4e-14 Score=145.34 Aligned_cols=217 Identities=19% Similarity=0.228 Sum_probs=143.1
Q ss_pred hcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEE-c
Q psy3611 222 KTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFI-A 300 (472)
Q Consensus 222 ~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~-l 300 (472)
..++.|+.|++++|.+... +..+.. |++|++|++++|..- .....+...+......+..++.+++|+.|+ +
T Consensus 346 ~~~~~L~~L~Ls~n~L~~L-p~~i~~------l~~L~~L~l~~n~~l-~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l 417 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVL-QSELES------CKELQELEPENKWCL-LTIILLMRALDPLLYEKETLQYFSTLKAVDPM 417 (567)
T ss_dssp STTTTSSSCCCCHHHHHHH-HHHHHH------HHHHHHHCTTCHHHH-HHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred ccCccceeccCChhhHHhh-HHHHHH------HHHHHHhccccchhh-hhHHHHHHhcccccCCHHHHHHHHhcccCcch
Confidence 3468888999998887422 334433 357888888654310 000011110001111111223345677777 5
Q ss_pred CCCCCChhhHHHHHH-HHh--cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCC
Q psy3611 301 GRNRLENEGAKMLAA-VFK--KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLP 377 (472)
Q Consensus 301 ~~~~l~~~~~~~l~~-~~~--~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~ 377 (472)
+.+.+.+-....+.. .+. ....|+.|++++|.++. ++. +..+++|+.|++++|.++. ++..+..++
T Consensus 418 ~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~ 486 (567)
T 1dce_A 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALR 486 (567)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCC-----CCGGGGGCT
T ss_pred hhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccc-----cchhhhcCC
Confidence 554332210000000 111 12479999999999983 344 7889999999999999982 456788999
Q ss_pred CCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHH-HHHHhcCCcccEEEccCCCCChhHHHHHHHH
Q psy3611 378 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDL-VKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456 (472)
Q Consensus 378 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l-~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 456 (472)
+|+.|++++|.+++ ++ .+..+++|+.|+|++|.++.. . +..+..+++|++|++++|+++... ......
T Consensus 487 ~L~~L~Ls~N~l~~-----lp-~l~~l~~L~~L~Ls~N~l~~~----~~p~~l~~l~~L~~L~L~~N~l~~~~-~~~~~l 555 (567)
T 1dce_A 487 CLEVLQASDNALEN-----VD-GVANLPRLQELLLCNNRLQQS----AAIQPLVSCPRLVLLNLQGNSLCQEE-GIQERL 555 (567)
T ss_dssp TCCEEECCSSCCCC-----CG-GGTTCSSCCEEECCSSCCCSS----STTGGGGGCTTCCEEECTTSGGGGSS-SCTTHH
T ss_pred CCCEEECCCCCCCC-----Cc-ccCCCCCCcEEECCCCCCCCC----CCcHHHhcCCCCCEEEecCCcCCCCc-cHHHHH
Confidence 99999999999996 56 788899999999999999873 2 788999999999999999986431 223345
Q ss_pred HHhCCceeEEec
Q psy3611 457 MKSFGMAAALVL 468 (472)
Q Consensus 457 l~~~~~L~~L~l 468 (472)
+..+|+|+.|++
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 556889998874
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.24 E-value=4.5e-12 Score=122.66 Aligned_cols=176 Identities=15% Similarity=0.155 Sum_probs=128.2
Q ss_pred cEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCC-CCcceeEEEcCCCCCC
Q psy3611 228 VELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG-SPLALKVFIAGRNRLE 306 (472)
Q Consensus 228 ~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~ 306 (472)
+.++++++.++.... .+ .+.++.|++++|.++.... ..+. .+++|+.|++++|.+.
T Consensus 21 ~~l~c~~~~l~~iP~-~~--------~~~l~~L~Ls~N~l~~l~~--------------~~~~~~l~~L~~L~L~~N~i~ 77 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SL--------PSYTALLDLSHNNLSRLRA--------------EWTPTRLTNLHSLLLSHNHLN 77 (361)
T ss_dssp TEEECCSSCCSSCCS-SC--------CTTCSEEECCSSCCCEECT--------------TSSSSCCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCccCc-cC--------CCCCCEEECCCCCCCccCh--------------hhhhhcccccCEEECCCCcCC
Confidence 578888887754321 11 1368899999999874321 1122 5688999999999988
Q ss_pred hhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCC
Q psy3611 307 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386 (472)
Q Consensus 307 ~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~ 386 (472)
.. .+..+..+++|+.|++++|+++... +..+..+++|++|++++|.+.... +..+..+++|+.|++++
T Consensus 78 ~i----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 78 FI----SSEAFVPVPNLRYLDLSSNHLHTLD----EFLFSDLQALEVLLLYNNHIVVVD----RNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp EE----CTTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCS
T ss_pred cc----ChhhccCCCCCCEEECCCCcCCcCC----HHHhCCCcCCCEEECCCCcccEEC----HHHhCCcccCCEEECCC
Confidence 63 2345778899999999999987432 345778899999999999988432 25677889999999999
Q ss_pred CCCChHHHHHHHHH-h---hcCCCCCEEECcCCCCCchhHHHHHHHHhcCCc--ccEEEccCCCCCh
Q psy3611 387 CLLKSAGASSIAKY-L---TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTK--LKQINVSENQFGE 447 (472)
Q Consensus 387 ~~i~~~~~~~l~~~-l---~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~--L~~L~l~~n~i~~ 447 (472)
|.++. ++.. + ..+++|+.|+|++|.|.... ...+..++. ++.|++++|++..
T Consensus 146 N~l~~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 146 NQISR-----FPVELIKDGNKLPKLMLLDLSSNKLKKLP----LTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SCCCS-----CCGGGTC----CTTCCEEECCSSCCCCCC----HHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CcCCe-----eCHHHhcCcccCCcCCEEECCCCCCCccC----HHHhhhccHhhcceEEecCCCccC
Confidence 99886 3332 2 45799999999999998742 345566665 4889999999864
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=2.8e-12 Score=109.81 Aligned_cols=137 Identities=18% Similarity=0.150 Sum_probs=108.8
Q ss_pred cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHH
Q psy3611 319 KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 398 (472)
Q Consensus 319 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 398 (472)
.+++|++|++++|.+++. .++..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+. ++
T Consensus 22 ~~~~L~~L~l~~n~l~~~---~i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~ 88 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDG---KIEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LD 88 (168)
T ss_dssp CTTSCSEEECCSCBCBTT---BCSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CC
T ss_pred CcccCCEEECCCCCCChh---hHHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HH
Confidence 457999999999998732 2344567789999999999999842 5677899999999999999874 45
Q ss_pred HHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCCC
Q psy3611 399 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 472 (472)
Q Consensus 399 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~~ 472 (472)
..+..+++|+.|++++|.++... .+..+..+++|++|++++|+++.... .....+..+++|+.|+++++.
T Consensus 89 ~~~~~l~~L~~L~Ls~N~l~~~~---~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNKLKDIS---TLEPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHHHCTTCCEEECBSSSCCSSG---GGGGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETT
T ss_pred HHHhhCCCCCEEeccCCccCcch---hHHHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCC
Confidence 55567899999999999998731 12678889999999999999864322 223467789999999998763
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.23 E-value=1.9e-12 Score=116.88 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=119.8
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHh
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l 373 (472)
+.+.++.+++.+.. +|.. -.++|+.|++++|.+.... +..+..+++|++|++++|.++.... ..+
T Consensus 20 s~~~v~c~~~~l~~-----ip~~--~~~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~N~l~~i~~----~~~ 84 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS-----VPAG--IPTNAQILYLHDNQITKLE----PGVFDSLINLKELYLGSNQLGALPV----GVF 84 (229)
T ss_dssp ETTEEECTTSCCSS-----CCSC--CCTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTT
T ss_pred eCCEeEccCCCcCc-----cCCC--CCCCCCEEEcCCCccCccC----HHHhhCccCCcEEECCCCCCCCcCh----hhc
Confidence 56778888887764 4432 2479999999999998432 4567789999999999999974221 456
Q ss_pred cCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHH
Q psy3611 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEM 453 (472)
Q Consensus 374 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 453 (472)
..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+.. ++..+..+++|++|++++|+++....
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l----~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~~--- 152 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVL----PSAVFDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKSIPH--- 152 (229)
T ss_dssp TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCCCCCT---
T ss_pred ccCCCcCEEECCCCcCCcc----ChhHhCcchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCCccCH---
Confidence 7899999999999999863 23456788999999999999986 67888999999999999999874322
Q ss_pred HHHHHhCCceeEEecCCC
Q psy3611 454 EKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 454 ~~~l~~~~~L~~L~l~~~ 471 (472)
..+..+++|+.|++++|
T Consensus 153 -~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 153 -GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp -TTTTTCTTCCEEECTTS
T ss_pred -HHHhCCCCCCEEEeeCC
Confidence 45667899999999886
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.22 E-value=3.3e-12 Score=123.65 Aligned_cols=173 Identities=20% Similarity=0.240 Sum_probs=129.6
Q ss_pred ceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHh-cCCCccEEeCCCCCCCh
Q psy3611 257 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFK-KLKTLERVEMPQNGIYH 335 (472)
Q Consensus 257 L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~i~~ 335 (472)
-+.++++++.++.. +..+ +..++.|++++|.+... .+.++. .+++|+.|++++|+|+.
T Consensus 20 ~~~l~c~~~~l~~i---------------P~~~--~~~l~~L~Ls~N~l~~l----~~~~~~~~l~~L~~L~L~~N~i~~ 78 (361)
T 2xot_A 20 SNILSCSKQQLPNV---------------PQSL--PSYTALLDLSHNNLSRL----RAEWTPTRLTNLHSLLLSHNHLNF 78 (361)
T ss_dssp TTEEECCSSCCSSC---------------CSSC--CTTCSEEECCSSCCCEE----CTTSSSSCCTTCCEEECCSSCCCE
T ss_pred CCEEEeCCCCcCcc---------------CccC--CCCCCEEECCCCCCCcc----ChhhhhhcccccCEEECCCCcCCc
Confidence 35788888887531 1112 24689999999999863 233444 78999999999999984
Q ss_pred hHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCC
Q psy3611 336 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 415 (472)
Q Consensus 336 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n 415 (472)
.. +..+..+++|++|++++|.+.... ...+..+++|+.|++++|.+... .+..+..+++|+.|+|++|
T Consensus 79 i~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 79 IS----SEAFVPVPNLRYLDLSSNHLHTLD----EFLFSDLQALEVLLLYNNHIVVV----DRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp EC----TTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSS
T ss_pred cC----hhhccCCCCCCEEECCCCcCCcCC----HHHhCCCcCCCEEECCCCcccEE----CHHHhCCcccCCEEECCCC
Confidence 42 346778999999999999998422 14577899999999999999874 3567788899999999999
Q ss_pred CCCchhHHHHHHHH----hcCCcccEEEccCCCCChhHHHHHHHHHHhCCc--eeEEecCCC
Q psy3611 416 EISVQGGLDLVKAM----KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM--AAALVLEDD 471 (472)
Q Consensus 416 ~i~~~~~~~l~~~l----~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~--L~~L~l~~~ 471 (472)
.+.. ++..+ ..+++|+.|++++|+++...... +..++. ++.|++++|
T Consensus 147 ~l~~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~----~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 147 QISR-----FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD----LQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCCS-----CCGGGTC----CTTCCEEECCSSCCCCCCHHH----HHHSCHHHHTTEECCSS
T ss_pred cCCe-----eCHHHhcCcccCCcCCEEECCCCCCCccCHHH----hhhccHhhcceEEecCC
Confidence 9987 33332 56899999999999998654443 334665 367888776
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.20 E-value=2.2e-12 Score=115.62 Aligned_cols=148 Identities=19% Similarity=0.263 Sum_probs=117.5
Q ss_pred eEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcC
Q psy3611 296 KVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375 (472)
Q Consensus 296 ~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~ 375 (472)
+.++.+++.+.. +|..+ .++++.|++++|.|+... +..+..+++|++|++++|.++... +..+..
T Consensus 14 ~~v~c~~~~l~~-----iP~~l--~~~l~~L~l~~n~i~~i~----~~~~~~l~~L~~L~Ls~N~i~~~~----~~~~~~ 78 (220)
T 2v9t_B 14 NIVDCRGKGLTE-----IPTNL--PETITEIRLEQNTIKVIP----PGAFSPYKKLRRIDLSNNQISELA----PDAFQG 78 (220)
T ss_dssp TEEECTTSCCSS-----CCSSC--CTTCCEEECCSSCCCEEC----TTSSTTCTTCCEEECCSSCCCEEC----TTTTTT
T ss_pred CEEEcCCCCcCc-----CCCcc--CcCCCEEECCCCcCCCcC----HhHhhCCCCCCEEECCCCcCCCcC----HHHhhC
Confidence 567777777764 44322 368999999999998432 346778999999999999998432 267788
Q ss_pred CCCCcEEEcCCCCCChHHHHHHH-HHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHH
Q psy3611 376 LPSLAILNLGDCLLKSAGASSIA-KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 454 (472)
Q Consensus 376 ~~~L~~L~l~~~~i~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~ 454 (472)
+++|++|++++|.++. ++ ..+..+++|+.|+|++|.+... .+..+..+++|++|++++|+++....
T Consensus 79 l~~L~~L~Ls~N~l~~-----l~~~~f~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~---- 145 (220)
T 2v9t_B 79 LRSLNSLVLYGNKITE-----LPKSLFEGLFSLQLLLLNANKINCL----RVDAFQDLHNLNLLSLYDNKLQTIAK---- 145 (220)
T ss_dssp CSSCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCCCT----
T ss_pred CcCCCEEECCCCcCCc-----cCHhHccCCCCCCEEECCCCCCCEe----CHHHcCCCCCCCEEECCCCcCCEECH----
Confidence 9999999999999986 44 3467789999999999999874 35678889999999999999875433
Q ss_pred HHHHhCCceeEEecCCC
Q psy3611 455 KLMKSFGMAAALVLEDD 471 (472)
Q Consensus 455 ~~l~~~~~L~~L~l~~~ 471 (472)
..+..+++|+.|++++|
T Consensus 146 ~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred HHHhCCCCCCEEEeCCC
Confidence 34566899999999987
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.19 E-value=3.1e-12 Score=114.64 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=117.7
Q ss_pred eeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhc
Q psy3611 295 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 374 (472)
Q Consensus 295 L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~ 374 (472)
-+.++++++.+.. +|.. -...++.|++++|.++... ....+..+++|++|++++|.++... ...+.
T Consensus 13 ~~~l~~s~n~l~~-----iP~~--~~~~~~~L~L~~N~l~~~~---~~~~~~~l~~L~~L~L~~N~i~~i~----~~~~~ 78 (220)
T 2v70_A 13 GTTVDCSNQKLNK-----IPEH--IPQYTAELRLNNNEFTVLE---ATGIFKKLPQLRKINFSNNKITDIE----EGAFE 78 (220)
T ss_dssp TTEEECCSSCCSS-----CCSC--CCTTCSEEECCSSCCCEEC---CCCCGGGCTTCCEEECCSSCCCEEC----TTTTT
T ss_pred CCEeEeCCCCccc-----CccC--CCCCCCEEEcCCCcCCccC---chhhhccCCCCCEEECCCCcCCEEC----HHHhC
Confidence 3578888887764 4432 2446789999999987431 0134678999999999999998422 14678
Q ss_pred CCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHH
Q psy3611 375 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 454 (472)
Q Consensus 375 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~ 454 (472)
.+++|++|++++|.+... .+..+..+++|+.|++++|.+... .+..+..+++|++|++++|+++....
T Consensus 79 ~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~---- 146 (220)
T 2v70_A 79 GASGVNEILLTSNRLENV----QHKMFKGLESLKTLMLRSNRITCV----GNDSFIGLSSVRLLSLYDNQITTVAP---- 146 (220)
T ss_dssp TCTTCCEEECCSSCCCCC----CGGGGTTCSSCCEEECTTSCCCCB----CTTSSTTCTTCSEEECTTSCCCCBCT----
T ss_pred CCCCCCEEECCCCccCcc----CHhHhcCCcCCCEEECCCCcCCeE----CHhHcCCCccCCEEECCCCcCCEECH----
Confidence 899999999999999864 345678899999999999999874 36678889999999999999876433
Q ss_pred HHHHhCCceeEEecCCC
Q psy3611 455 KLMKSFGMAAALVLEDD 471 (472)
Q Consensus 455 ~~l~~~~~L~~L~l~~~ 471 (472)
..+..+++|+.|++++|
T Consensus 147 ~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TTTTTCTTCCEEECCSC
T ss_pred HHhcCCCCCCEEEecCc
Confidence 45566899999999987
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=4.6e-12 Score=109.33 Aligned_cols=136 Identities=15% Similarity=0.215 Sum_probs=92.5
Q ss_pred CCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHH
Q psy3611 291 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 370 (472)
Q Consensus 291 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 370 (472)
.+++|+.|++++|.+.. ++......++|+.|++++|.++.. ..+..+++|++|++++|.++....
T Consensus 17 ~~~~L~~L~l~~n~l~~-----i~~~~~~~~~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~~~~---- 81 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGE---- 81 (176)
T ss_dssp CTTSCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECS----
T ss_pred CcCCceEEEeeCCCCch-----hHHhhhcCCCCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccccCc----
Confidence 35677888888877764 322222234888888888888732 456678888888888888873211
Q ss_pred HHhcCCCCCcEEEcCCCCCChHHHHHHHH--HhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 371 QALSKLPSLAILNLGDCLLKSAGASSIAK--YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 371 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~--~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
..+..+++|++|++++|.+++ ++. .+..+++|+.|++++|.+...... -...+..+++|+.|++++|.+.+
T Consensus 82 ~~~~~l~~L~~L~L~~N~i~~-----~~~~~~l~~l~~L~~L~l~~N~i~~~~~~-~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSLVE-----LGDLDPLASLKSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CHHHHCTTCCEEECCSCCCCC-----GGGGGGGGGCTTCCEEECCSSGGGGSTTH-HHHHHHHCTTCSEETTEECCHHH
T ss_pred chhhcCCCCCEEECCCCcCCc-----chhhHhhhcCCCCCEEEecCCCCCCcHhH-HHHHHHHCCccceeCCCcCCHHH
Confidence 223567888888888888875 443 667788888888888887652110 01246778888888888886543
No 128
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.18 E-value=2.1e-12 Score=114.78 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=17.5
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG 268 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~ 268 (472)
+.|++|++++|.++......+ ..+++|++|++++|.++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~ 65 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVF------DELTSLTQLYLGGNKLQ 65 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTT------TTCTTCSEEECCSSCCC
T ss_pred CCCcEEEcCCCccCcCChhhh------cccccCcEEECCCCccC
Confidence 455555555555533221111 23445555555555543
No 129
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.18 E-value=1e-11 Score=110.19 Aligned_cols=112 Identities=22% Similarity=0.263 Sum_probs=48.9
Q ss_pred hcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHH
Q psy3611 318 KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 397 (472)
Q Consensus 318 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l 397 (472)
..+++|++|++++|+++... ...+..+++|++|++++|.++... ...+..+++|++|++++|.++.. .
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----~ 116 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSLP----NGVFNKLTSLTYLNLSTNQLQSLP----NGVFDKLTQLKELALNTNQLQSL----P 116 (208)
T ss_dssp TTCTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCC----C
T ss_pred cccccCcEEECCCCccCccC----hhhcCCCCCcCEEECCCCcCCccC----HhHhcCccCCCEEEcCCCcCccc----C
Confidence 34445555555555444211 122334455555555555444211 02234445555555555554431 1
Q ss_pred HHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCC
Q psy3611 398 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445 (472)
Q Consensus 398 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 445 (472)
+..+..+++|+.|++++|.++.. ....+..+++|++|++++|++
T Consensus 117 ~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 117 DGVFDKLTQLKDLRLYQNQLKSV----PDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSCCB
T ss_pred HhHhccCCcCCEEECCCCcccee----CHHHhccCCCccEEEecCCCe
Confidence 12234445555555555554432 112234445555555555544
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=3.8e-13 Score=118.62 Aligned_cols=135 Identities=19% Similarity=0.216 Sum_probs=84.3
Q ss_pred HHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChH
Q psy3611 313 LAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 392 (472)
Q Consensus 313 l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~ 392 (472)
++..+..+++|+.|++++|.++. ++ .+..+++|++|++++|.++. ++..+..+++|++|++++|.+++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~L~~N~l~~- 107 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQIAS- 107 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEEECS-----CSSHHHHHHHCSEEEEEEEECCC-
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCCccc-----ccchhhcCCcCCEEECcCCcCCc-
Confidence 44466677777777777777663 22 45566777777777776652 11233334667777777777765
Q ss_pred HHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhH------HHHHHHHHHhCCceeEE
Q psy3611 393 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG------VEEMEKLMKSFGMAAAL 466 (472)
Q Consensus 393 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~------~~~l~~~l~~~~~L~~L 466 (472)
++ .+..+++|+.|++++|.+...+ ....+..+++|++|++++|++.+.. .......+..+++|+.|
T Consensus 108 ----l~-~~~~l~~L~~L~l~~N~i~~~~---~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 108 ----LS-GIEKLVNLRVLYMSNNKITNWG---EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp ----HH-HHHHHHHSSEEEESEEECCCHH---HHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred ----CC-ccccCCCCCEEECCCCcCCchh---HHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 33 3455677777777777776521 1135667777777777777764432 22334556667777777
Q ss_pred e
Q psy3611 467 V 467 (472)
Q Consensus 467 ~ 467 (472)
|
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 6
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=1.3e-11 Score=106.45 Aligned_cols=131 Identities=12% Similarity=0.113 Sum_probs=103.5
Q ss_pred hcCCCccEEeCCCCCCChhHHHHHHHHHhcC-CCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHH
Q psy3611 318 KKLKTLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396 (472)
Q Consensus 318 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~ 396 (472)
..+.+|++|++++|.++.. + .+..+ ++|++|++++|.++. . ..+..+++|++|++++|.+++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-----~-~~~~~~~~L~~L~Ls~N~l~~--~----~~l~~l~~L~~L~Ls~N~l~~----- 78 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-----E-NLGATLDQFDAIDFSDNEIRK--L----DGFPLLRRLKTLLVNNNRICR----- 78 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-----C-CGGGGTTCCSEEECCSSCCCE--E----CCCCCCSSCCEEECCSSCCCE-----
T ss_pred CCcCCceEEEeeCCCCchh-----H-HhhhcCCCCCEEECCCCCCCc--c----cccccCCCCCEEECCCCcccc-----
Confidence 3577999999999999832 2 23344 499999999999984 2 567789999999999999986
Q ss_pred HH-HHhhcCCCCCEEECcCCCCCchhHHHHHH--HHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 397 IA-KYLTDNTTLEDVNLTCNEISVQGGLDLVK--AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 397 l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
++ ..+..+++|+.|++++|.++. ++. .+..+++|++|++++|+++... ..-...+..+++|+.||++++
T Consensus 79 ~~~~~~~~l~~L~~L~L~~N~i~~-----~~~~~~l~~l~~L~~L~l~~N~i~~~~-~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 79 IGEGLDQALPDLTELILTNNSLVE-----LGDLDPLASLKSLTYLCILRNPVTNKK-HYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECSCHHHHCTTCCEEECCSCCCCC-----GGGGGGGGGCTTCCEEECCSSGGGGST-THHHHHHHHCTTCSEETTEEC
T ss_pred cCcchhhcCCCCCEEECCCCcCCc-----chhhHhhhcCCCCCEEEecCCCCCCcH-hHHHHHHHHCCccceeCCCcC
Confidence 33 334678999999999999987 454 6888999999999999986432 222335677999999999875
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.06 E-value=2.4e-11 Score=128.10 Aligned_cols=109 Identities=18% Similarity=0.191 Sum_probs=63.3
Q ss_pred CCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHH
Q psy3611 291 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 370 (472)
Q Consensus 291 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 370 (472)
.++.|+.|+|++|.+.. ++..+..+++|+.|+|++|.|+ .++..+..+++|+.|+|++|.++. ++
T Consensus 222 ~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~-----lp 286 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFN-----ISANIFKYDFLTRLYLNGNSLT-----ELPAEIKNLSNLRVLDLSHNRLTS-----LP 286 (727)
T ss_dssp CCCCCCEEECTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCS-----CCCGGGGGGTTCCEEECTTSCCSS-----CC
T ss_pred cCCCCcEEECCCCCCCC-----CChhhcCCCCCCEEEeeCCcCc-----ccChhhhCCCCCCEEeCcCCcCCc-----cC
Confidence 34556666666666553 3434445666666666666665 234445566666666666666551 23
Q ss_pred HHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 371 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 371 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
..+..+++|+.|+|++|.++. ++..+..+++|+.|+|++|.+..
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCS
T ss_pred hhhcCCCCCCEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCC
Confidence 445556666666666666653 45555566666666666666654
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.05 E-value=9.8e-11 Score=123.43 Aligned_cols=122 Identities=19% Similarity=0.238 Sum_probs=101.3
Q ss_pred HHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchh
Q psy3611 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG 82 (472)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~ 82 (472)
++.|..+++|+.|+|++|.+.. ++..+..+++|++|+|++|.++ .+| ..+..+++|++|+|++|.++.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~---~lp--~~~~~l~~L~~L~Ls~N~l~~-- 284 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN-----ISANIFKYDFLTRLYLNGNSLT---ELP--AEIKNLSNLRVLDLSHNRLTS-- 284 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCS---CCC--GGGGGGTTCCEEECTTSCCSS--
T ss_pred hhhhccCCCCcEEECCCCCCCC-----CChhhcCCCCCCEEEeeCCcCc---ccC--hhhhCCCCCCEEeCcCCcCCc--
Confidence 4568889999999999999874 5666678999999999999985 455 668899999999999999983
Q ss_pred HHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHH
Q psy3611 83 ASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 144 (472)
Q Consensus 83 ~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 144 (472)
++..++.+++|++|+|++|.++. ++..+..+++|++|+|++|.+.+..+..+..
T Consensus 285 ---lp~~~~~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 285 ---LPAELGSCFQLKYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp ---CCSSGGGGTTCSEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred ---cChhhcCCCCCCEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 57778889999999999999974 6777889999999999999999877766654
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=6.4e-11 Score=113.02 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=62.2
Q ss_pred cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCc-EEEcCCCCCChHHHHHH
Q psy3611 319 KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA-ILNLGDCLLKSAGASSI 397 (472)
Q Consensus 319 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~-~L~l~~~~i~~~~~~~l 397 (472)
.+++|+.+++++|+++..+ ..+|.++++|+++++.+| +...+. .++..+++|+ .+++.. .++..+
T Consensus 224 ~~~~L~~l~L~~n~i~~I~----~~aF~~~~~L~~l~l~~n-i~~I~~----~aF~~~~~L~~~l~l~~-~l~~I~---- 289 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIP----DFTFAQKKYLLKIKLPHN-LKTIGQ----RVFSNCGRLAGTLELPA-SVTAIE---- 289 (329)
T ss_dssp HCTTCCEEECTTBCCCEEC----TTTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCEEEEECT-TCCEEC----
T ss_pred hcCCCeEEECCCCCcceec----HhhhhCCCCCCEEECCcc-cceehH----HHhhCChhccEEEEEcc-cceEEc----
Confidence 4666777777766665333 345666777777777666 443232 4566677777 777766 444321
Q ss_pred HHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEE
Q psy3611 398 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQIN 439 (472)
Q Consensus 398 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 439 (472)
..++..|++|+.+++++|.+...+ ..++.+|++|+.+.
T Consensus 290 ~~aF~~c~~L~~l~l~~n~i~~I~----~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATGDKITTLG----DELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTTCTTEEEEEECSSCCCEEC----TTTTCTTCCCCEEE
T ss_pred hhhhhCCccCCEEEeCCCccCccc----hhhhcCCcchhhhc
Confidence 245666777777777777666532 33566677777665
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.01 E-value=4.4e-11 Score=104.71 Aligned_cols=109 Identities=22% Similarity=0.282 Sum_probs=60.0
Q ss_pred CccEEeCCCCCCChhHHHHHH-HHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHH
Q psy3611 322 TLERVEMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400 (472)
Q Consensus 322 ~L~~L~l~~~~i~~~~~~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 400 (472)
+++.|++++|.++... + ..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+++. .+..
T Consensus 30 ~l~~L~l~~n~i~~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~ 97 (192)
T 1w8a_A 30 HTTELLLNDNELGRIS----SDGLFGRLPHLVKLELKRNQLTGI----EPNAFEGASHIQELQLGENKIKEI----SNKM 97 (192)
T ss_dssp TCSEEECCSCCCCSBC----CSCSGGGCTTCCEEECCSSCCCCB----CTTTTTTCTTCCEEECCSCCCCEE----CSSS
T ss_pred CCCEEECCCCcCCccC----CccccccCCCCCEEECCCCCCCCc----CHhHcCCcccCCEEECCCCcCCcc----CHHH
Confidence 5666666666654221 1 1244566666666666666521 113455566666666666666542 2233
Q ss_pred hhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 401 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 401 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
+..+++|+.|++++|.++.. .+..+..+++|++|++++|++.
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCV----MPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp STTCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECTTCCBC
T ss_pred hcCCCCCCEEECCCCcCCee----CHHHhhcCCCCCEEEeCCCCcc
Confidence 45556666666666666553 3445555666666666666654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.00 E-value=2.8e-11 Score=106.55 Aligned_cols=139 Identities=19% Similarity=0.188 Sum_probs=105.3
Q ss_pred hHHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccch
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 81 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~ 81 (472)
++..|..+++|++|++++|.++. ++ .+..+++|++|++++|.+. .++ ..+..+++|++|++++|.+++.
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~---~l~--~~~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNLIK---KIE--NLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEEEC---SCS--SHHHHHHHCSEEEEEEEECCCH
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCCcc---ccc--chhhcCCcCCEEECcCCcCCcC
Confidence 45689999999999999998875 34 6778899999999999885 233 4456668999999999999862
Q ss_pred hHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhH------HHHHHHHHhchhhHHh
Q psy3611 82 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV------EEMEKLMKSFGMAAAL 155 (472)
Q Consensus 82 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~------~~l~~~l~~~~~l~~L 155 (472)
+ .+..+++|++|++++|.+++.. ....+..+++|++|++++|.+....+ ......+..++.++.|
T Consensus 109 -----~-~~~~l~~L~~L~l~~N~i~~~~---~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 109 -----S-GIEKLVNLRVLYMSNNKITNWG---EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp -----H-HHHHHHHSSEEEESEEECCCHH---HHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred -----C-ccccCCCCCEEECCCCcCCchh---HHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 3 3566789999999999998621 12467889999999999998865532 2334445667777766
Q ss_pred hhccC
Q psy3611 156 VLEDD 160 (472)
Q Consensus 156 ~~~~~ 160 (472)
..+.+
T Consensus 180 d~~~i 184 (198)
T 1ds9_A 180 DGMPV 184 (198)
T ss_dssp CCGGG
T ss_pred CCccc
Confidence 54433
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.00 E-value=1.9e-12 Score=124.75 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=72.0
Q ss_pred cEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHH-HHhh
Q psy3611 13 EHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA-KYLT 91 (472)
Q Consensus 13 ~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~-~~l~ 91 (472)
+.++.++++++. +|..+ .+++++|+|++|.++ .++- .+|..+++|++|+|++|.+.+. ++ ..+.
T Consensus 12 ~~v~C~~~~Lt~-----iP~~l--~~~l~~L~Ls~N~i~---~i~~-~~f~~l~~L~~L~Ls~N~i~~~----i~~~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESKVTE-----IPSDL--PRNAIELRFVLTKLR---VIQK-GAFSGFGDLEKIEISQNDVLEV----IEADVFS 76 (350)
T ss_dssp TEEEEESTTCCS-----CCTTC--CTTCSEEEEESCCCS---EECT-TSSTTCTTCCEEEEECCTTCCE----ECTTSBC
T ss_pred CEEEecCCCCCc-----cCcCc--CCCCCEEEccCCcCC---CcCH-HHHcCCCCCCEEECcCCCCCCc----cChhHhh
Confidence 567777777774 45444 367899999999885 2331 4678889999999999987542 22 2345
Q ss_pred cCCcccE-EECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCCh
Q psy3611 92 DNTTLED-VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 92 ~~~~L~~-L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 136 (472)
.+++++. +.+++|.+... .+..+..+++|++|++++|.+..
T Consensus 77 ~L~~l~~~l~~~~N~l~~l----~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYI----NPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp SCTTCCEEEEEEETTCCEE----CTTSBCCCTTCCEEEEEEECCSS
T ss_pred cchhhhhhhcccCCccccc----Cchhhhhcccccccccccccccc
Confidence 5666554 66667777752 24556778899999999887753
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.00 E-value=1.6e-10 Score=101.18 Aligned_cols=140 Identities=19% Similarity=0.216 Sum_probs=85.7
Q ss_pred eEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcC
Q psy3611 296 KVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375 (472)
Q Consensus 296 ~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~ 375 (472)
+.++++++.+.. +|.. -.++|++|++++|.++ .++..+..+++|+.|++++|.++... +..+..
T Consensus 13 ~~l~~~~~~l~~-----ip~~--~~~~l~~L~L~~n~i~-----~ip~~~~~l~~L~~L~Ls~N~i~~i~----~~~f~~ 76 (193)
T 2wfh_A 13 TVVRCSNKGLKV-----LPKG--IPRDVTELYLDGNQFT-----LVPKELSNYKHLTLIDLSNNRISTLS----NQSFSN 76 (193)
T ss_dssp TEEECTTSCCSS-----CCSC--CCTTCCEEECCSSCCC-----SCCGGGGGCTTCCEEECCSSCCCCCC----TTTTTT
T ss_pred CEEEcCCCCCCc-----CCCC--CCCCCCEEECCCCcCc-----hhHHHhhcccCCCEEECCCCcCCEeC----HhHccC
Confidence 456666666553 3322 1346777777777776 23345667777777777777776321 144666
Q ss_pred CCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh-hHHHHHH
Q psy3611 376 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE-EGVEEME 454 (472)
Q Consensus 376 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~-~~~~~l~ 454 (472)
+++|++|++++|.++.. .+.++..+++|+.|+|++|.|... ....+..+++|++|++++|++.. -.+..+.
T Consensus 77 l~~L~~L~Ls~N~l~~i----~~~~f~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~ 148 (193)
T 2wfh_A 77 MTQLLTLILSYNRLRCI----PPRTFDGLKSLRLLSLHGNDISVV----PEGAFNDLSALSHLAIGANPLYCDCNMQWLS 148 (193)
T ss_dssp CTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred CCCCCEEECCCCccCEe----CHHHhCCCCCCCEEECCCCCCCee----ChhhhhcCccccEEEeCCCCeecCCcCHHHH
Confidence 77777777777777653 234566677777777777777752 12245667777788887777643 2234444
Q ss_pred HHHHh
Q psy3611 455 KLMKS 459 (472)
Q Consensus 455 ~~l~~ 459 (472)
.+++.
T Consensus 149 ~~~~~ 153 (193)
T 2wfh_A 149 DWVKS 153 (193)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=5.2e-10 Score=96.39 Aligned_cols=145 Identities=18% Similarity=0.223 Sum_probs=92.2
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHh
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l 373 (472)
+.+.++++++.+.. ++.. -.++|++|++++|+++... ...+..+++|++|++++|.++.... ..+
T Consensus 8 ~~~~l~~~~~~l~~-----~p~~--~~~~l~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~----~~~ 72 (177)
T 2o6r_A 8 SGTEIRCNSKGLTS-----VPTG--IPSSATRLELESNKLQSLP----HGVFDKLTQLTKLSLSQNQIQSLPD----GVF 72 (177)
T ss_dssp ETTEEECCSSCCSS-----CCTT--CCTTCSEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCCCCT----TTT
T ss_pred CCCEEEecCCCCcc-----CCCC--CCCCCcEEEeCCCcccEeC----HHHhcCcccccEEECCCCcceEeCh----hHc
Confidence 34566666666653 2221 2357788888887776321 2345667788888888887763211 345
Q ss_pred cCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhH--HH
Q psy3611 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG--VE 451 (472)
Q Consensus 374 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~--~~ 451 (472)
..+++|+.|++++|.++.. .+..+..+++|+.|++++|.++.. .+..+..+++|++|++++|++.... .+
T Consensus 73 ~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~~~~~~l~ 144 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSL----PNGVFDKLTQLKELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNPWDCSCPRID 144 (177)
T ss_dssp TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred cCCCccCEEECCCCCcccc----CHHHhhCCcccCEEECcCCcceEe----CHHHhcCCcccCEEEecCCCeeccCccHH
Confidence 6677888888888887752 223456678888888888877752 1223466778888888888876533 45
Q ss_pred HHHHHHHhCC
Q psy3611 452 EMEKLMKSFG 461 (472)
Q Consensus 452 ~l~~~l~~~~ 461 (472)
.+..++....
T Consensus 145 ~l~~~~~~~~ 154 (177)
T 2o6r_A 145 YLSRWLNKNS 154 (177)
T ss_dssp HHHHHHHHTG
T ss_pred HHHHHHhhCc
Confidence 5556665544
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=1.2e-10 Score=111.10 Aligned_cols=125 Identities=15% Similarity=0.178 Sum_probs=79.1
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 334 (472)
.++..+.+.++ +.......+... |++|+.+++++|.+..-+ ..+|..+.+|++++++.+ +.
T Consensus 202 ~~~~~l~~~~~-l~~~~~~~l~~~-------------~~~L~~l~L~~n~i~~I~----~~aF~~~~~L~~l~l~~n-i~ 262 (329)
T 3sb4_A 202 RDINFLTIEGK-LDNADFKLIRDY-------------MPNLVSLDISKTNATTIP----DFTFAQKKYLLKIKLPHN-LK 262 (329)
T ss_dssp GGCSEEEEEEC-CCHHHHHHHHHH-------------CTTCCEEECTTBCCCEEC----TTTTTTCTTCCEEECCTT-CC
T ss_pred cccceEEEeee-ecHHHHHHHHHh-------------cCCCeEEECCCCCcceec----HhhhhCCCCCCEEECCcc-cc
Confidence 35666666654 333333333221 456777888777666421 125667788888888876 54
Q ss_pred hhHHHHHHHHHhcCCCcc-EEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEE
Q psy3611 335 HVGITALSDAFEENKNLR-HLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVN 411 (472)
Q Consensus 335 ~~~~~~l~~~l~~~~~L~-~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~ 411 (472)
..+ ..+|.++++|+ .+++.+ .++..+. .++..|++|+.|+++.+.+...+ ..++..+++|+.+.
T Consensus 263 ~I~----~~aF~~~~~L~~~l~l~~-~l~~I~~----~aF~~c~~L~~l~l~~n~i~~I~----~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 263 TIG----QRVFSNCGRLAGTLELPA-SVTAIEF----GAFMGCDNLRYVLATGDKITTLG----DELFGNGVPSKLIY 327 (329)
T ss_dssp EEC----TTTTTTCTTCCEEEEECT-TCCEECT----TTTTTCTTEEEEEECSSCCCEEC----TTTTCTTCCCCEEE
T ss_pred eeh----HHHhhCChhccEEEEEcc-cceEEch----hhhhCCccCCEEEeCCCccCccc----hhhhcCCcchhhhc
Confidence 333 45677788888 888877 5553332 56777888888888887777632 24667777887765
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.92 E-value=6e-10 Score=97.39 Aligned_cols=110 Identities=22% Similarity=0.366 Sum_probs=80.6
Q ss_pred ceeEEEcCCCCCChhhHHHHHH--HHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAA--VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
+++.|++++|.+.. ++. .+..+++|++|++++|+++... +..+.++++|++|++++|.++... +.
T Consensus 30 ~l~~L~l~~n~i~~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~ 96 (192)
T 1w8a_A 30 HTTELLLNDNELGR-----ISSDGLFGRLPHLVKLELKRNQLTGIE----PNAFEGASHIQELQLGENKIKEIS----NK 96 (192)
T ss_dssp TCSEEECCSCCCCS-----BCCSCSGGGCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSCCCCEEC----SS
T ss_pred CCCEEECCCCcCCc-----cCCccccccCCCCCEEECCCCCCCCcC----HhHcCCcccCCEEECCCCcCCccC----HH
Confidence 68888888888765 222 3667888888888888887321 456777888888888888887322 14
Q ss_pred HhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCch
Q psy3611 372 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 420 (472)
Q Consensus 372 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 420 (472)
.+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+...
T Consensus 97 ~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQISCV----MPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SSTTCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECTTCCBCCS
T ss_pred HhcCCCCCCEEECCCCcCCee----CHHHhhcCCCCCEEEeCCCCccCc
Confidence 466778888888888888764 456667778888888888877643
No 142
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.88 E-value=1.1e-11 Score=119.51 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=77.4
Q ss_pred CCccEEeccCCCcchhhHHHHH-HhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcE-EeccCccccchhHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALS-DAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAI-LNLGDCLLKSAGASSIA 87 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~-L~ls~~~l~~~~~~~l~ 87 (472)
+++++|+|++|.|+. ++ ..|.++++|++|+|++|.+. +.++. .+|..++++++ +.++.|.+... -+
T Consensus 30 ~~l~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~Ls~N~i~--~~i~~-~~f~~L~~l~~~l~~~~N~l~~l----~~ 97 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVL--EVIEA-DVFSNLPKLHEIRIEKANNLLYI----NP 97 (350)
T ss_dssp TTCSEEEEESCCCSE-----ECTTSSTTCTTCCEEEEECCTTC--CEECT-TSBCSCTTCCEEEEEEETTCCEE----CT
T ss_pred CCCCEEEccCCcCCC-----cCHHHHcCCCCCCEEECcCCCCC--CccCh-hHhhcchhhhhhhcccCCccccc----Cc
Confidence 579999999999985 34 46889999999999999874 33331 45778888775 66677888763 24
Q ss_pred HHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC
Q psy3611 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 132 (472)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 132 (472)
..+..+++|++|++++|.+.... ........++..|++.++
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLP----DVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCC----CCTTCCBSSCEEEEEESC
T ss_pred hhhhhccccccccccccccccCC----chhhcccchhhhhhhccc
Confidence 55677899999999999987521 112234456777877553
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.88 E-value=8.1e-10 Score=96.61 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=87.7
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++|++|++++|.++. ++..+..+++|++|++++|.++. ..+ ..|..+++|++|++++|.++.. .+..
T Consensus 31 ~~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~--i~~--~~f~~l~~L~~L~Ls~N~l~~i----~~~~ 97 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRIST--LSN--QSFSNMTQLLTLILSYNRLRCI----PPRT 97 (193)
T ss_dssp TTCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCC--CCT--TTTTTCTTCCEEECCSSCCCBC----CTTT
T ss_pred CCCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCE--eCH--hHccCCCCCCEEECCCCccCEe----CHHH
Confidence 579999999998874 56778889999999999999863 333 5688899999999999999874 2345
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCC
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 135 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 135 (472)
+..+++|++|++++|.++.. .+..+..+++|+.|++++|.+.
T Consensus 98 f~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVV----PEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECCSSCEE
T ss_pred hCCCCCCCEEECCCCCCCee----ChhhhhcCccccEEEeCCCCee
Confidence 67789999999999999852 2234667889999999999764
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.88 E-value=1.4e-09 Score=93.74 Aligned_cols=123 Identities=20% Similarity=0.253 Sum_probs=93.6
Q ss_pred cCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHH
Q psy3611 9 LKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 88 (472)
Q Consensus 9 ~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~ 88 (472)
.++|++|++++|.+.. ..+..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.+++. .+.
T Consensus 27 ~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~--~~~~--~~~~~l~~L~~L~l~~N~l~~~----~~~ 94 (177)
T 2o6r_A 27 PSSATRLELESNKLQS----LPHGVFDKLTQLTKLSLSQNQIQ--SLPD--GVFDKLTKLTILYLHENKLQSL----PNG 94 (177)
T ss_dssp CTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCC--CCCT--TTTTTCTTCCEEECCSSCCCCC----CTT
T ss_pred CCCCcEEEeCCCcccE----eCHHHhcCcccccEEECCCCcce--EeCh--hHccCCCccCEEECCCCCcccc----CHH
Confidence 3689999999999885 22455788899999999999985 3333 4578899999999999999863 234
Q ss_pred HhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhH--HHHHHHHH
Q psy3611 89 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV--EEMEKLMK 147 (472)
Q Consensus 89 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~--~~l~~~l~ 147 (472)
.+..+++|++|++++|.++.. .+..+..+++|++|++++|.+....+ ..+...+.
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~ 151 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 151 (177)
T ss_dssp TTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred HhhCCcccCEEECcCCcceEe----CHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHh
Confidence 456789999999999999852 22335678999999999999876543 33444433
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.87 E-value=2.6e-09 Score=90.43 Aligned_cols=93 Identities=13% Similarity=0.252 Sum_probs=64.4
Q ss_pred CCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCC-CCChHHHHHHHHHhhcCCCCCEEECcCC-CCCchhHHHHH
Q psy3611 349 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCN-EISVQGGLDLV 426 (472)
Q Consensus 349 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~ 426 (472)
..|+.||++++.+++.|. ..+..+++|++|+|++| .+++.|...+...-..+++|+.|+|++| .|++.|+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~--- 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII--- 133 (176)
T ss_dssp CCEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH---
T ss_pred ceEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH---
Confidence 457888888888877776 44567888888888887 4777776555431011246888888887 58887643
Q ss_pred HHHhcCCcccEEEccCCC-CChhH
Q psy3611 427 KAMKNKTKLKQINVSENQ-FGEEG 449 (472)
Q Consensus 427 ~~l~~~~~L~~L~l~~n~-i~~~~ 449 (472)
.+..+++|++|++++|+ +++.+
T Consensus 134 -~L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 134 -ALHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp -HGGGCTTCCEEEEESCTTCCCHH
T ss_pred -HHhcCCCCCEEECCCCCCCCchH
Confidence 34567888888888876 77655
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.79 E-value=1.6e-09 Score=92.68 Aligned_cols=81 Identities=22% Similarity=0.267 Sum_probs=36.2
Q ss_pred eeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhc
Q psy3611 295 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 374 (472)
Q Consensus 295 L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~ 374 (472)
.+.++++++.+.. +|..+ .++|+.|++++|.|+... +..+.++++|++|++++|.++... ...+.
T Consensus 11 ~~~l~~s~n~l~~-----ip~~~--~~~l~~L~L~~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~l~----~~~f~ 75 (170)
T 3g39_A 11 GTTVDCSGKSLAS-----VPTGI--PTTTQVLYLYDNQITKLE----PGVFDRLTQLTRLDLDNNQLTVLP----AGVFD 75 (170)
T ss_dssp TTEEECTTSCCSS-----CCSCC--CTTCSEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCCCC----TTTTT
T ss_pred CCEEEeCCCCcCc-----cCccC--CCCCcEEEcCCCcCCccC----hhhhcCcccCCEEECCCCCcCccC----hhhcc
Confidence 4556666665553 22211 245555555555554211 233444555555555555544211 02233
Q ss_pred CCCCCcEEEcCCCCCC
Q psy3611 375 KLPSLAILNLGDCLLK 390 (472)
Q Consensus 375 ~~~~L~~L~l~~~~i~ 390 (472)
.+++|++|++++|.++
T Consensus 76 ~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLK 91 (170)
T ss_dssp TCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCccC
Confidence 4444444444444444
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.75 E-value=1.2e-08 Score=86.28 Aligned_cols=86 Identities=21% Similarity=0.239 Sum_probs=40.6
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCC-CChhHHHHHHHHHhcCCCccEEEccCCC-CCcccHHHHHH
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDNT-ITYKGAIPLGQ 371 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~ 371 (472)
.|++||++++.+++.|+..+ ..+++|++|++++|. ++|.|+..+...-..+++|++|++++|. +++.|..
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~---- 133 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII---- 133 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH----
T ss_pred eEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH----
Confidence 35555555555555544322 345555555555552 5555544443210001345555555542 5554442
Q ss_pred HhcCCCCCcEEEcCCC
Q psy3611 372 ALSKLPSLAILNLGDC 387 (472)
Q Consensus 372 ~l~~~~~L~~L~l~~~ 387 (472)
.+..+++|++|++++|
T Consensus 134 ~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HGGGCTTCCEEEEESC
T ss_pred HHhcCCCCCEEECCCC
Confidence 2334555555555555
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.73 E-value=6.8e-09 Score=88.68 Aligned_cols=122 Identities=19% Similarity=0.205 Sum_probs=92.6
Q ss_pred CccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHh
Q psy3611 11 TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90 (472)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l 90 (472)
..+.++++++.++. +|..+ .++|++|++++|.+. +..+ ..+..+++|++|++++|.++.. .+..+
T Consensus 10 ~~~~l~~s~n~l~~-----ip~~~--~~~l~~L~L~~N~i~--~~~~--~~~~~l~~L~~L~Ls~N~l~~l----~~~~f 74 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-----VPTGI--PTTTQVLYLYDNQIT--KLEP--GVFDRLTQLTRLDLDNNQLTVL----PAGVF 74 (170)
T ss_dssp ETTEEECTTSCCSS-----CCSCC--CTTCSEEECCSSCCC--CCCT--TTTTTCTTCSEEECCSSCCCCC----CTTTT
T ss_pred CCCEEEeCCCCcCc-----cCccC--CCCCcEEEcCCCcCC--ccCh--hhhcCcccCCEEECCCCCcCcc----Chhhc
Confidence 46789999998885 45444 378999999999986 3334 5688899999999999999863 23445
Q ss_pred hcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChh--hHHHHHHHHHhchh
Q psy3611 91 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE--GVEEMEKLMKSFGM 151 (472)
Q Consensus 91 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~--~~~~l~~~l~~~~~ 151 (472)
..+++|++|+|++|.+... .+..+..+++|++|++++|.+.-. ....+...++..+.
T Consensus 75 ~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~ 133 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSI----PRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPG 133 (170)
T ss_dssp TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGG
T ss_pred cCCCCCCEEECCCCccCEe----CHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcc
Confidence 6789999999999999862 233577889999999999988654 24455555554443
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.69 E-value=5e-09 Score=89.86 Aligned_cols=103 Identities=25% Similarity=0.307 Sum_probs=52.3
Q ss_pred eEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcC
Q psy3611 296 KVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375 (472)
Q Consensus 296 ~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~ 375 (472)
+.++++++.+.. +|..+ .++|+.|++++|.|.... +..+.++++|++|++++|.++. ... ..+..
T Consensus 15 ~~l~~~~n~l~~-----iP~~~--~~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~--i~~--~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQNIRLAS-----VPAGI--PTDKQRLWLNNNQITKLE----PGVFDHLVNLQQLYFNSNKLTA--IPT--GVFDK 79 (174)
T ss_dssp SEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCC--CCT--TTTTT
T ss_pred cEEEeCCCCCCc-----cCCCc--CCCCcEEEeCCCCccccC----HHHhcCCcCCCEEECCCCCCCc--cCh--hHhCC
Confidence 566666666653 33321 256666666666655221 3344555666666666665552 100 22344
Q ss_pred CCCCcEEEcCCCCCChHHHHHHHH-HhhcCCCCCEEECcCCCCC
Q psy3611 376 LPSLAILNLGDCLLKSAGASSIAK-YLTDNTTLEDVNLTCNEIS 418 (472)
Q Consensus 376 ~~~L~~L~l~~~~i~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~ 418 (472)
+++|+.|++++|.+.. ++. .+..+++|+.|+|++|.+.
T Consensus 80 l~~L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKS-----IPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CTTCCEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCBC
T ss_pred cchhhEEECCCCccce-----eCHHHhccccCCCEEEeCCCCcc
Confidence 5555555555555553 222 2444555555555555544
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.62 E-value=2.4e-08 Score=85.55 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=88.4
Q ss_pred ccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhh
Q psy3611 12 LEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 91 (472)
Q Consensus 12 L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~ 91 (472)
-+.++++++.++. +|..+ .++|++|++++|.+. +..+ ..+..+++|++|+|++|.+++. -+..+.
T Consensus 14 ~~~l~~~~n~l~~-----iP~~~--~~~L~~L~Ls~N~l~--~~~~--~~~~~l~~L~~L~Ls~N~l~~i----~~~~~~ 78 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-----VPAGI--PTDKQRLWLNNNQIT--KLEP--GVFDHLVNLQQLYFNSNKLTAI----PTGVFD 78 (174)
T ss_dssp SSEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCC--CCCT--TTTTTCTTCCEEECCSSCCCCC----CTTTTT
T ss_pred CcEEEeCCCCCCc-----cCCCc--CCCCcEEEeCCCCcc--ccCH--HHhcCCcCCCEEECCCCCCCcc----ChhHhC
Confidence 4689999998874 55544 389999999999985 4444 5688999999999999999863 123356
Q ss_pred cCCcccEEECcCCccCcchHHHHHH-HhhhCCCccEEEecCCcCChh--hHHHHHHHHH
Q psy3611 92 DNTTLEDVNLTCNEISVQGGLDLVK-AMKNKTKLKQINVSENQFGEE--GVEEMEKLMK 147 (472)
Q Consensus 92 ~~~~L~~L~l~~~~i~~~~~~~l~~-~l~~~~~L~~L~l~~~~i~~~--~~~~l~~~l~ 147 (472)
.+++|++|+|++|.+.. ++. .+..+++|++|++++|.+.-. ....+...+.
T Consensus 79 ~l~~L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~ 132 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKS-----IPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVA 132 (174)
T ss_dssp TCTTCCEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHH
T ss_pred CcchhhEEECCCCccce-----eCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHH
Confidence 78999999999999985 333 477889999999999988644 2344444443
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.42 E-value=1.1e-07 Score=92.74 Aligned_cols=103 Identities=14% Similarity=0.211 Sum_probs=61.7
Q ss_pred hcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHH
Q psy3611 8 KLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87 (472)
Q Consensus 8 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~ 87 (472)
-+..++.+.+... ++.-+ ..+|..+ +|+.+.+..+ +...+. .+|..+ +|+.+.+.. .+...+ .
T Consensus 111 ~~~~l~~i~ip~~-i~~I~----~~aF~~~-~L~~i~l~~~-i~~I~~----~aF~~~-~L~~i~lp~-~l~~I~----~ 173 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIP----KDAFRNS-QIAKVVLNEG-LKSIGD----MAFFNS-TVQEIVFPS-TLEQLK----E 173 (401)
T ss_dssp ECSSCSEEECCTT-CCEEC----TTTTTTC-CCSEEECCTT-CCEECT----TTTTTC-CCCEEECCT-TCCEEC----S
T ss_pred ecCCccEEEECCc-cCEeh----HhhcccC-CccEEEeCCC-ccEECH----HhcCCC-CceEEEeCC-CccEeh----H
Confidence 4567777777664 33211 3345554 6888888765 433333 345554 688888875 444322 1
Q ss_pred HHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC
Q psy3611 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 132 (472)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 132 (472)
.++..+++|+.++++.|.+..- +...-.+.+|+.+.+..+
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I-----~~~aF~~~~L~~l~lp~~ 213 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKL-----PASTFVYAGIEEVLLPVT 213 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEE-----CTTTTTTCCCSEEECCTT
T ss_pred HHhhCcccCCeeecCCCcceEe-----chhhEeecccCEEEeCCc
Confidence 3455678888888888777642 222223678888887643
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.41 E-value=8.5e-08 Score=93.66 Aligned_cols=329 Identities=15% Similarity=0.168 Sum_probs=172.3
Q ss_pred HHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
.+|.+|.+|+.+.|..+ ++.-| ..+|.+|++|+.+++..+ +...+. .++..+.+|+.+.+..+ +...+.
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~----~~aF~~c~~L~~i~lp~~-l~~I~~----~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIG----EFAFENCSKLEIINIPDS-VKMIGR----CTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEEC----TTTTTTCTTCCEECCCTT-CCEECT----TTTTTCTTCCCCCCCTT-CCEECT
T ss_pred HHhhCCCCceEEEeCCC-ccCcc----hhHhhCCCCCcEEEeCCC-ceEccc----hhhcccccchhhcccCc-eeeecc
Confidence 47888999999999754 44322 456888899999998754 332232 45778888888777654 222211
Q ss_pred HHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCC
Q psy3611 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 163 (472)
Q Consensus 84 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~ 163 (472)
.++..+..++..........+ ..++..|++|+.+.+.++.. .-.... +..+.+|+.+.+..
T Consensus 134 ----~aF~~~~~~~~~~~~~~~~i~------~~aF~~c~~L~~i~l~~~~~-~I~~~~----F~~c~~L~~i~l~~---- 194 (394)
T 4fs7_A 134 ----EAFKGCDFKEITIPEGVTVIG------DEAFATCESLEYVSLPDSME-TLHNGL----FSGCGKLKSIKLPR---- 194 (394)
T ss_dssp ----TTTTTCCCSEEECCTTCCEEC------TTTTTTCTTCCEEECCTTCC-EECTTT----TTTCTTCCBCCCCT----
T ss_pred ----eeeecccccccccCccccccc------hhhhcccCCCcEEecCCccc-eecccc----ccCCCCceEEEcCC----
Confidence 122233322222222221111 13456788888888765421 100000 01122221111110
Q ss_pred CCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHH
Q psy3611 164 CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243 (472)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 243 (472)
.+.......+..+..|+.+.+..+...... .
T Consensus 195 ------------------------------------------------~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~-~ 225 (394)
T 4fs7_A 195 ------------------------------------------------NLKIIRDYCFAECILLENMEFPNSLYYLGD-F 225 (394)
T ss_dssp ------------------------------------------------TCCEECTTTTTTCTTCCBCCCCTTCCEECT-T
T ss_pred ------------------------------------------------CceEeCchhhccccccceeecCCCceEeeh-h
Confidence 011111223344566666655544331100 0
Q ss_pred HHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCc
Q psy3611 244 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL 323 (472)
Q Consensus 244 ~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L 323 (472)
. ..+..|+.+.+.... +..+ ...+..|..++.+.+..+...- -..++..+..+
T Consensus 226 ~-------~~~~~l~~i~ip~~~-~~i~--------------~~~f~~~~~l~~~~~~~~~~~i-----~~~~F~~~~~l 278 (394)
T 4fs7_A 226 A-------LSKTGVKNIIIPDSF-TELG--------------KSVFYGCTDLESISIQNNKLRI-----GGSLFYNCSGL 278 (394)
T ss_dssp T-------TTTCCCCEEEECTTC-CEEC--------------SSTTTTCSSCCEEEECCTTCEE-----CSCTTTTCTTC
T ss_pred h-------cccCCCceEEECCCc-eecc--------------cccccccccceeEEcCCCccee-----ecccccccccc
Confidence 0 123467777664422 1100 0112335667777776554321 11244567777
Q ss_pred cEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhc
Q psy3611 324 ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403 (472)
Q Consensus 324 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~ 403 (472)
+.+......+.+ .++..+.+|+.+.+..+ +...|. .++..|++|+.+++..+ +...| ..++..
T Consensus 279 ~~~~~~~~~i~~-------~~F~~~~~L~~i~l~~~-i~~I~~----~aF~~c~~L~~i~lp~~-v~~I~----~~aF~~ 341 (394)
T 4fs7_A 279 KKVIYGSVIVPE-------KTFYGCSSLTEVKLLDS-VKFIGE----EAFESCTSLVSIDLPYL-VEEIG----KRSFRG 341 (394)
T ss_dssp CEEEECSSEECT-------TTTTTCTTCCEEEECTT-CCEECT----TTTTTCTTCCEECCCTT-CCEEC----TTTTTT
T ss_pred ceeccCceeecc-------ccccccccccccccccc-cceech----hhhcCCCCCCEEEeCCc-ccEEh----HHhccC
Confidence 777776665542 24556778888888654 443232 45677888888888643 44321 246677
Q ss_pred CCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEE
Q psy3611 404 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 466 (472)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L 466 (472)
|.+|+.+.+..+ +...| ..++.+|++|+++.+..+ +. .+..++..+++|+.+
T Consensus 342 c~~L~~i~lp~~-l~~I~----~~aF~~C~~L~~i~lp~~-~~-----~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 342 CTSLSNINFPLS-LRKIG----ANAFQGCINLKKVELPKR-LE-----QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCTT-CCEEC----TTTBTTCTTCCEEEEEGG-GG-----GGGGGBCTTCEEEEE
T ss_pred CCCCCEEEECcc-ccEeh----HHHhhCCCCCCEEEECCC-CE-----EhhheecCCCCCcEE
Confidence 788888888665 33321 246778888888888653 21 122346667777764
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.28 E-value=3.2e-07 Score=87.85 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=82.3
Q ss_pred cEEeccCC-CcchhhHHHHHHhhhcCCCCCeeeCCC-CccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHh
Q psy3611 13 EHVEMPQN-GIYHVGITALSDAFEENKKLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90 (472)
Q Consensus 13 ~~L~L~~~-~l~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l 90 (472)
..++++++ .++. +|. +..+++|++|+|++ |.+. +..+ ..|..+++|++|+|++|.+++. .+..+
T Consensus 11 ~~v~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~--~~~~--~~~~~l~~L~~L~l~~N~l~~~----~~~~~ 76 (347)
T 2ifg_A 11 SGLRCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQ--HLEL--RDLRGLGELRNLTIVKSGLRFV----APDAF 76 (347)
T ss_dssp SCEECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCC--EECG--GGSCSCCCCSEEECCSSCCCEE----CTTGG
T ss_pred CEEEcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCC--CcCh--hHhccccCCCEEECCCCcccee----CHHHh
Confidence 35788877 7774 777 88899999999996 8885 3444 5688999999999999999874 45567
Q ss_pred hcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCCh
Q psy3611 91 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 91 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 136 (472)
..+++|++|+|++|.++. ++..+.....|+.|++.+|.+.-
T Consensus 77 ~~l~~L~~L~l~~N~l~~-----~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALES-----LSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp GSCSCCCEEECCSSCCSC-----CCSTTTCSCCCCEEECCSSCCCC
T ss_pred cCCcCCCEEeCCCCccce-----eCHHHcccCCceEEEeeCCCccC
Confidence 889999999999999985 33333333349999999998863
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.27 E-value=3e-07 Score=89.77 Aligned_cols=306 Identities=19% Similarity=0.190 Sum_probs=166.6
Q ss_pred HHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
.+|.+|++|+.+++..+ +..-| ..++..|+.|+.+.+..+ +...+. .+|..+..+..........-+
T Consensus 88 ~aF~~c~~L~~i~lp~~-l~~I~----~~aF~~c~~L~~i~~p~~-l~~i~~----~aF~~~~~~~~~~~~~~~~i~--- 154 (394)
T 4fs7_A 88 FAFENCSKLEIINIPDS-VKMIG----RCTFSGCYALKSILLPLM-LKSIGV----EAFKGCDFKEITIPEGVTVIG--- 154 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEEC----TTTTTTCTTCCCCCCCTT-CCEECT----TTTTTCCCSEEECCTTCCEEC---
T ss_pred hHhhCCCCCcEEEeCCC-ceEcc----chhhcccccchhhcccCc-eeeecc----eeeecccccccccCccccccc---
Confidence 47999999999999866 44322 355888999998877654 222222 345555544444333322111
Q ss_pred HHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCC
Q psy3611 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 163 (472)
Q Consensus 84 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~ 163 (472)
..++..+++|+.+.+..+...-. ...+..+.+|+.+.+..+ +..-....+ ..+..|+.
T Consensus 155 ---~~aF~~c~~L~~i~l~~~~~~I~-----~~~F~~c~~L~~i~l~~~-~~~I~~~~F----~~~~~L~~--------- 212 (394)
T 4fs7_A 155 ---DEAFATCESLEYVSLPDSMETLH-----NGLFSGCGKLKSIKLPRN-LKIIRDYCF----AECILLEN--------- 212 (394)
T ss_dssp ---TTTTTTCTTCCEEECCTTCCEEC-----TTTTTTCTTCCBCCCCTT-CCEECTTTT----TTCTTCCB---------
T ss_pred ---hhhhcccCCCcEEecCCccceec-----cccccCCCCceEEEcCCC-ceEeCchhh----ccccccce---------
Confidence 13456678899988876532210 234567788888887654 211000000 01111111
Q ss_pred CCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHH
Q psy3611 164 CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243 (472)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 243 (472)
+.+.... .........+..|+.+.+....- ..+..
T Consensus 213 ---------------------------i~~~~~~-----------------~~i~~~~~~~~~l~~i~ip~~~~-~i~~~ 247 (394)
T 4fs7_A 213 ---------------------------MEFPNSL-----------------YYLGDFALSKTGVKNIIIPDSFT-ELGKS 247 (394)
T ss_dssp ---------------------------CCCCTTC-----------------CEECTTTTTTCCCCEEEECTTCC-EECSS
T ss_pred ---------------------------eecCCCc-----------------eEeehhhcccCCCceEEECCCce-ecccc
Confidence 1110000 00000111235666666543221 11111
Q ss_pred HHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCc
Q psy3611 244 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL 323 (472)
Q Consensus 244 ~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L 323 (472)
.+ ..|..++.+.+..+...- ....+..+..++.+......+... ++..+.+|
T Consensus 248 ~f------~~~~~l~~~~~~~~~~~i---------------~~~~F~~~~~l~~~~~~~~~i~~~-------~F~~~~~L 299 (394)
T 4fs7_A 248 VF------YGCTDLESISIQNNKLRI---------------GGSLFYNCSGLKKVIYGSVIVPEK-------TFYGCSSL 299 (394)
T ss_dssp TT------TTCSSCCEEEECCTTCEE---------------CSCTTTTCTTCCEEEECSSEECTT-------TTTTCTTC
T ss_pred cc------cccccceeEEcCCCccee---------------eccccccccccceeccCceeeccc-------cccccccc
Confidence 11 235567777776543210 011223356677777666554432 45577888
Q ss_pred cEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhc
Q psy3611 324 ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403 (472)
Q Consensus 324 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~ 403 (472)
+.+.+..+ +...| ..+|.++.+|+.+++..+ ++..|. .++..|++|+.+.+..+ ++..+ ..++..
T Consensus 300 ~~i~l~~~-i~~I~----~~aF~~c~~L~~i~lp~~-v~~I~~----~aF~~c~~L~~i~lp~~-l~~I~----~~aF~~ 364 (394)
T 4fs7_A 300 TEVKLLDS-VKFIG----EEAFESCTSLVSIDLPYL-VEEIGK----RSFRGCTSLSNINFPLS-LRKIG----ANAFQG 364 (394)
T ss_dssp CEEEECTT-CCEEC----TTTTTTCTTCCEECCCTT-CCEECT----TTTTTCTTCCEECCCTT-CCEEC----TTTBTT
T ss_pred cccccccc-cceec----hhhhcCCCCCCEEEeCCc-ccEEhH----HhccCCCCCCEEEECcc-ccEeh----HHHhhC
Confidence 88888764 33222 346777888999988654 543333 56778889999988765 44422 256788
Q ss_pred CCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEE
Q psy3611 404 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQI 438 (472)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 438 (472)
|++|+.+++..+ +.. +..++.+|++|+.+
T Consensus 365 C~~L~~i~lp~~-~~~-----~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 365 CINLKKVELPKR-LEQ-----YRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEEEEEGG-GGG-----GGGGBCTTCEEEEE
T ss_pred CCCCCEEEECCC-CEE-----hhheecCCCCCcEE
Confidence 899999988654 222 23457778888765
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.24 E-value=5.1e-07 Score=86.45 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=63.0
Q ss_pred eEEEcCCC-CCChhhHHHHHHHHhcCCCccEEeCCC-CCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHh
Q psy3611 296 KVFIAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQ-NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373 (472)
Q Consensus 296 ~~L~l~~~-~l~~~~~~~l~~~~~~~~~L~~L~l~~-~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l 373 (472)
..++.+++ .+.. +|. +..+.+|+.|+|++ |.++... +..|.++++|+.|+|++|.+. +.. +..+
T Consensus 11 ~~v~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~~~~----~~~~~~l~~L~~L~l~~N~l~--~~~--~~~~ 76 (347)
T 2ifg_A 11 SGLRCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQHLE----LRDLRGLGELRNLTIVKSGLR--FVA--PDAF 76 (347)
T ss_dssp SCEECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCCEEC----GGGSCSCCCCSEEECCSSCCC--EEC--TTGG
T ss_pred CEEEcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCCCcC----hhHhccccCCCEEECCCCccc--eeC--HHHh
Confidence 34566666 6664 565 66666777777775 7766321 245666777777777777776 321 2455
Q ss_pred cCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 374 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
..+++|+.|+|++|.+.. ++........|+.|+|.+|.+.-
T Consensus 77 ~~l~~L~~L~l~~N~l~~-----~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALES-----LSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp GSCSCCCEEECCSSCCSC-----CCSTTTCSCCCCEEECCSSCCCC
T ss_pred cCCcCCCEEeCCCCccce-----eCHHHcccCCceEEEeeCCCccC
Confidence 667777777777777664 33222222237777777776653
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=8.7e-06 Score=74.07 Aligned_cols=43 Identities=35% Similarity=0.428 Sum_probs=20.5
Q ss_pred cCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccc
Q psy3611 36 ENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80 (472)
Q Consensus 36 ~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~ 80 (472)
.+++|+.|+|++|.+.....++ ..+..+++|+.|+|++|.+++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~--~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMS--SIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGT--THHHHSTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCCCCCCccch--hHHhhCCCCCEEECCCCccCC
Confidence 3455555555555554222222 334445555555555555544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=2.4e-05 Score=71.20 Aligned_cols=89 Identities=19% Similarity=0.266 Sum_probs=64.7
Q ss_pred hhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccch---h
Q psy3611 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA---G 82 (472)
Q Consensus 6 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~---~ 82 (472)
..++++|+.|+|++|.++.-. .++..+..+++|++|+|++|.+.... .+ ..+..+ +|++|++++|++.+. .
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l-~~l~~l-~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSER--EL-DKIKGL-KLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTSCCCSGG--GG-GGGTTS-CCSEEECTTSTTGGGCSSH
T ss_pred HhhCCCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCCccCCch--hh-hhcccC-CcceEEccCCcCccccCcc
Confidence 357899999999999988522 35566778999999999999996432 22 234444 899999999998752 1
Q ss_pred HHHHHHHhhcCCcccEEE
Q psy3611 83 ASSIAKYLTDNTTLEDVN 100 (472)
Q Consensus 83 ~~~l~~~l~~~~~L~~L~ 100 (472)
.......+..+++|+.||
T Consensus 240 ~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHCTTCCEES
T ss_pred hhHHHHHHHHCcccCeEC
Confidence 123345566678888876
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.80 E-value=2.7e-06 Score=82.93 Aligned_cols=184 Identities=18% Similarity=0.245 Sum_probs=109.7
Q ss_pred hhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEE
Q psy3611 219 MSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVF 298 (472)
Q Consensus 219 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L 298 (472)
..+..|.+|+.+++.+|.+...+...+ .|.+|+.+.+..+ ++..+. ..+..|++|+.+
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF-------~~~~L~~l~lp~~-l~~I~~--------------~aF~~~~~L~~l 231 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTF-------VYAGIEEVLLPVT-LKEIGS--------------QAFLKTSQLKTI 231 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTT-------TTCCCSEEECCTT-CCEECT--------------TTTTTCTTCCCE
T ss_pred HHhhCcccCCeeecCCCcceEechhhE-------eecccCEEEeCCc-hheehh--------------hHhhCCCCCCEE
Confidence 456678889999998887755543333 2457888888743 432221 123446788888
Q ss_pred EcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHH-HHHhcCCC
Q psy3611 299 IAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL-GQALSKLP 377 (472)
Q Consensus 299 ~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l-~~~l~~~~ 377 (472)
++..+ +..-+. .+|.. .+|+.+.+.. .+...+ ..+|.++++|+.+++.++.+.......+ ..++..|+
T Consensus 232 ~l~~~-l~~I~~----~aF~~-~~L~~i~lp~-~i~~I~----~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~ 300 (401)
T 4fdw_A 232 EIPEN-VSTIGQ----EAFRE-SGITTVKLPN-GVTNIA----SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP 300 (401)
T ss_dssp ECCTT-CCEECT----TTTTT-CCCSEEEEET-TCCEEC----TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred ecCCC-ccCccc----ccccc-CCccEEEeCC-CccEEC----hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence 88764 332111 12333 6788888754 333222 3466778888888887775531000000 14667788
Q ss_pred CCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 378 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 378 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
+|+.+.+.. .+...+ ..++..|+.|+.+.|..+ +...+ ..++.+| +|+++.+.+|.+.
T Consensus 301 ~L~~l~l~~-~i~~I~----~~aF~~c~~L~~l~lp~~-l~~I~----~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 301 KLARFEIPE-SIRILG----QGLLGGNRKVTQLTIPAN-VTQIN----FSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TCCEECCCT-TCCEEC----TTTTTTCCSCCEEEECTT-CCEEC----TTSSSSS-CCCEEEECCSSCC
T ss_pred cCCeEEeCC-ceEEEh----hhhhcCCCCccEEEECcc-ccEEc----HHhCCCC-CCCEEEEcCCCCc
Confidence 888888874 354422 245677788888888554 33321 3456677 8888888877653
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.80 E-value=4.7e-06 Score=81.22 Aligned_cols=110 Identities=21% Similarity=0.327 Sum_probs=63.0
Q ss_pred HHhhhcC-CccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCc---cCccchHHHHHHhccCCCCcEEeccCcccc
Q psy3611 4 AVFKKLK-TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNT---ITYKGAIPLGQALSKLPSLAILNLGDCLLK 79 (472)
Q Consensus 4 ~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~ 79 (472)
.+|.+|+ .|+.+.+... ++.-| ..+|.+|++|+.+.+..+. +...+. .+|..+.+|+.+.+..+ ++
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig----~~AF~~C~~L~~i~~~~n~p~~l~~Ig~----~aF~~c~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIG----SNAFYNCTSLKRVTIQDNKPSCVKKIGR----QAFMFCSELTDIPILDS-VT 126 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEEC----TTTTTTCTTCCEEEEGGGCCCCCCEECT----TTTTTCTTCCBCGGGTT-CS
T ss_pred hhccCCCCcCEEEEECCC-eeEEh----HHHhhCCccCceEeecCCCCCeeeEech----hhchhcccceeeccCCc-cc
Confidence 3677775 4888888765 34322 3557788888888776542 322222 45677777777776543 22
Q ss_pred chhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC
Q psy3611 80 SAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 132 (472)
Q Consensus 80 ~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 132 (472)
..+ ..++..+.+|+.+.+......-. ...+..+..|+.+.+..+
T Consensus 127 ~I~----~~aF~~c~~L~~i~lp~~~~~I~-----~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 127 EID----SEAFHHCEELDTVTIPEGVTSVA-----DGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp EEC----TTTTTTCTTCCEEECCTTCCEEC-----TTTTTTCTTCCEEECCTT
T ss_pred eeh----hhhhhhhcccccccccceeeeec-----ccceecccccccccccce
Confidence 221 12344567788887764322110 133456777777776543
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.66 E-value=5.6e-05 Score=73.51 Aligned_cols=109 Identities=19% Similarity=0.288 Sum_probs=70.1
Q ss_pred HHhhhcCCccEEeccCCC---cchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccc
Q psy3611 4 AVFKKLKTLEHVEMPQNG---IYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~---l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~ 80 (472)
.+|.+|.+|+.+.+..+. +..-| ..+|..|.+|+.+.+..+ +...+. .++..+.+|+.+.+... +..
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig----~~aF~~c~~L~~i~~~~~-~~~I~~----~aF~~c~~L~~i~lp~~-~~~ 150 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIG----RQAFMFCSELTDIPILDS-VTEIDS----EAFHHCEELDTVTIPEG-VTS 150 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEEC----TTTTTTCTTCCBCGGGTT-CSEECT----TTTTTCTTCCEEECCTT-CCE
T ss_pred HHhhCCccCceEeecCCCCCeeeEec----hhhchhcccceeeccCCc-cceehh----hhhhhhcccccccccce-eee
Confidence 479999999999997652 44322 356888999999887654 222222 46788999999999754 222
Q ss_pred hhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC
Q psy3611 81 AGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 132 (472)
Q Consensus 81 ~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 132 (472)
.+ ...+..+..|+.+.+..+- ..-+. .++ .+..|+.+.+...
T Consensus 151 I~----~~~F~~c~~L~~i~~~~~~-~~I~~----~aF-~~~~l~~i~ip~~ 192 (394)
T 4gt6_A 151 VA----DGMFSYCYSLHTVTLPDSV-TAIEE----RAF-TGTALTQIHIPAK 192 (394)
T ss_dssp EC----TTTTTTCTTCCEEECCTTC-CEECT----TTT-TTCCCSEEEECTT
T ss_pred ec----ccceeccccccccccccee-eEecc----ccc-cccceeEEEECCc
Confidence 21 1334567889999987652 21111 122 2457888887654
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.31 E-value=0.063 Score=51.33 Aligned_cols=108 Identities=20% Similarity=0.310 Sum_probs=56.3
Q ss_pred HHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHH
Q psy3611 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 395 (472)
Q Consensus 316 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~ 395 (472)
++..+..|+.+.+..+ ++..+ ..++.++..|+.+.+..+ +...+. .++..|++|+.+.+.++.+...+
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~----~~aF~~~~~l~~i~l~~~-i~~i~~----~aF~~c~~L~~i~l~~~~i~~I~-- 302 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIG----SFLLQNCTALKTLNFYAK-VKTVPY----LLCSGCSNLTKVVMDNSAIETLE-- 302 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEEC----TTTTTTCTTCCEEEECCC-CSEECT----TTTTTCTTCCEEEECCTTCCEEC--
T ss_pred cccCCccceEEEcCCC-ccEeC----ccccceeehhcccccccc-ceeccc----cccccccccccccccccccceeh--
Confidence 3445666666666553 22111 234455666666666543 332222 34556666777776666554421
Q ss_pred HHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccC
Q psy3611 396 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 442 (472)
Q Consensus 396 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 442 (472)
..++..|.+|+.+.|..+ ++..| ..++.+|++|+++.+..
T Consensus 303 --~~aF~~c~~L~~i~lp~~-l~~I~----~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 303 --PRVFMDCVKLSSVTLPTA-LKTIQ----VYAFKNCKALSTISYPK 342 (379)
T ss_dssp --TTTTTTCTTCCEEECCTT-CCEEC----TTTTTTCTTCCCCCCCT
T ss_pred --hhhhcCCCCCCEEEcCcc-ccEEH----HHHhhCCCCCCEEEECC
Confidence 235556666777766543 22211 23455666666666643
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.84 E-value=0.17 Score=48.22 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=52.0
Q ss_pred HhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHH
Q psy3611 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 84 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~ 84 (472)
+|..+.+|+.+.+..+ +..-+ ..++..+..|+.+.+..+ +...+. .++..+.+|+.+.+..+ +...+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~----~~~f~~~~~L~~i~lp~~-v~~I~~----~aF~~~~~l~~i~l~~~-i~~i~-- 278 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLG----DGAFYGMKALDEIAIPKN-VTSIGS----FLLQNCTALKTLNFYAK-VKTVP-- 278 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEEC----TTTTTTCSSCCEEEECTT-CCEECT----TTTTTCTTCCEEEECCC-CSEEC--
T ss_pred ccccccccceeeeccc-eeEEc----cccccCCccceEEEcCCC-ccEeCc----cccceeehhcccccccc-ceecc--
Confidence 4455666666666544 22211 233555666666666543 221122 34555666666666433 22211
Q ss_pred HHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecC
Q psy3611 85 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 131 (472)
Q Consensus 85 ~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~ 131 (472)
..++..+++|+.+.+.++.+..-+ ..++..|.+|+.+.+..
T Consensus 279 --~~aF~~c~~L~~i~l~~~~i~~I~----~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 279 --YLLCSGCSNLTKVVMDNSAIETLE----PRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp --TTTTTTCTTCCEEEECCTTCCEEC----TTTTTTCTTCCEEECCT
T ss_pred --ccccccccccccccccccccceeh----hhhhcCCCCCCEEEcCc
Confidence 122334566666666555443211 13345566666666643
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.95 E-value=0.24 Score=39.26 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=14.5
Q ss_pred CCcEEEcCCCCCChHHHHHHH-HHhhcCCCCCEEECcCC
Q psy3611 378 SLAILNLGDCLLKSAGASSIA-KYLTDNTTLEDVNLTCN 415 (472)
Q Consensus 378 ~L~~L~l~~~~i~~~~~~~l~-~~l~~~~~L~~L~L~~n 415 (472)
+++.|+|++|.|+. ++ ..+..+++|+.|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~-----l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTA-----LPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSS-----CCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCc-----cChhhhhhccccCEEEecCC
Confidence 34555555554443 21 22333444444444444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.79 E-value=0.28 Score=38.86 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=16.2
Q ss_pred CCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccc
Q psy3611 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 78 (472)
Q Consensus 39 ~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l 78 (472)
+|++|+|++|.++.... ..|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPP----GLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCT----TTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccCh----hhhhhccccCEEEecCCCe
Confidence 45555555555432111 2344444555555555443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.14 E-value=8.5 Score=28.48 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=17.5
Q ss_pred HhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCC
Q psy3611 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLND 47 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~ 47 (472)
+|.+|.+|+.+.+..+ ++.-| ..+|..|.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig----~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLY----DGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCC----TTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEc----HHHHhccCCccEEEEcC
Confidence 4555555555555544 12111 23345555555555543
Done!