RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3611
(472 letters)
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 179 bits (457), Expect = 1e-52
Identities = 103/256 (40%), Positives = 149/256 (58%), Gaps = 14/256 (5%)
Query: 219 MSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKA 278
L G L ELDLSDNA GP G L LLRSS +L+ELKLNNNGLG G +LL+K
Sbjct: 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSS---SLQELKLNNNGLGDRGLRLLAKG 131
Query: 279 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGI 338
L D P AL+ + GRNRLE + LA + + L+ + + NGI GI
Sbjct: 132 LKDL---------PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182
Query: 339 TALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 398
AL++ + N NL L+LN+N +T +GA L + L+ L SL +LNLGD L AGA+++A
Sbjct: 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242
Query: 399 K-YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLM 457
L+ N +L ++L+CN+I+ G DL + + K L ++++ N+FGEEG + + + +
Sbjct: 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302
Query: 458 KSFG-MAAALVLEDDE 472
G +L ++DD
Sbjct: 303 LEPGNELESLWVKDDS 318
Score = 109 bits (274), Expect = 1e-26
Identities = 56/162 (34%), Positives = 95/162 (58%), Gaps = 2/162 (1%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
LA + + L+ + + NGI GI AL++ + N L L+LN+N +T +GA L +
Sbjct: 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAK-YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 120
L+ L SL +LNLGD L AGA+++A L+ N +L ++L+CN+I+ G DL + +
Sbjct: 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE 276
Query: 121 KTKLKQINVSENQFGEEGVEEMEKLMKSFG-MAAALVLEDDE 161
K L ++++ N+FGEEG + + + + G +L ++DD
Sbjct: 277 KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318
Score = 68.9 bits (169), Expect = 7e-13
Identities = 78/335 (23%), Positives = 134/335 (40%), Gaps = 35/335 (10%)
Query: 59 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI--SVQGGLDLVK 116
+ L KL L +L L L A ++A L +L+++ L+ NE +G L++
Sbjct: 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ 75
Query: 117 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEE 176
+ L+++++S+N G +G +E L++S + + + G
Sbjct: 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG-------------- 121
Query: 177 NDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNA 236
D D + N + +L+ L EL+L++N
Sbjct: 122 ---DRGLRLLAKGLKDLPPALEKLVLGRN--RLEGASCEALAKALRANRDLKELNLANNG 176
Query: 237 FGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALK 296
G G+ LA+ L+++C LE L LNNNGL G L++ L +L+
Sbjct: 177 IGDAGIRALAEGLKANC--NLEVLDLNNNGLTDEGASALAETLAS----------LKSLE 224
Query: 297 VFIAGRNRLENEGAKMLAAVFKKL-KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLN 355
V G N L + GA LA+ +L + + N I G L++ E ++L L+
Sbjct: 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD 284
Query: 356 LNDNTITYKGAIPLGQAL-SKLPSLAILNLGDCLL 389
L N +GA L ++L L L + D
Sbjct: 285 LRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319
Score = 68.2 bits (167), Expect = 1e-12
Identities = 58/244 (23%), Positives = 98/244 (40%), Gaps = 49/244 (20%)
Query: 257 LEELKLNNNGLGITGCKLLSKALHD-------CYESSKKEGSPLALKVFIAG-------- 301
L+ L+L N LG K L+ AL C ++ P L+ + G
Sbjct: 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84
Query: 302 --------------------------------RNRLENEGAKMLAAVFKKLK-TLERVEM 328
N L + G ++LA K L LE++ +
Sbjct: 85 ELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144
Query: 329 PQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL 388
+N + AL+ A N++L+ LNL +N I G L + L +L +L+L +
Sbjct: 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204
Query: 389 LKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN-KTKLKQINVSENQFGE 447
L GAS++A+ L +LE +NL N ++ G L A+ + L +++S N +
Sbjct: 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264
Query: 448 EGVE 451
+G +
Sbjct: 265 DGAK 268
Score = 64.7 bits (158), Expect = 2e-11
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 19 QNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 78
+N + AL+ A N+ L+ LNL +N I G L + L +L +L+L + L
Sbjct: 146 RNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205
Query: 79 KSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN-KTKLKQINVSENQFGEE 137
GAS++A+ L +LE +NL N ++ G L A+ + L +++S N ++
Sbjct: 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD 265
Query: 138 GVE 140
G +
Sbjct: 266 GAK 268
Score = 63.1 bits (154), Expect = 6e-11
Identities = 60/259 (23%), Positives = 101/259 (38%), Gaps = 28/259 (10%)
Query: 26 GITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85
G+ +L + L+ L+L+DN + G L ++L + SL L L + L G
Sbjct: 69 GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRL 127
Query: 86 IAKYLTDNT-TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 144
+AK L D LE + L N + L KA++ LK++N++ N G+ G+ + +
Sbjct: 128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187
Query: 145 LMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEG---DNSNLSHNDSNHSHNASN 201
+K+ L L ++ E S +L +
Sbjct: 188 GLKANCNLEVLDLNNNGLTD-----------EGASALAETLASLKSLEVLNLGD------ 230
Query: 202 QSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELK 261
N+ + + L L+ L LS N G + LA++L L EL
Sbjct: 231 ----NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES--LLELD 284
Query: 262 LNNNGLGITGCKLLSKALH 280
L N G G +LL+++L
Sbjct: 285 LRGNKFGEEGAQLLAESLL 303
Score = 48.9 bits (117), Expect = 2e-06
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 11 TLEHVEMPQNGIYHVGITALSDAFEENK-KLRHLNLNDNTITYKGAIPLGQALSKLPSLA 69
+L+ +++ NG+ G+ L+ ++ L L L N + L +AL L
Sbjct: 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK 168
Query: 70 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINV 129
LNL + + AG ++A+ L N LE ++L N ++ +G L + + + L+ +N+
Sbjct: 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228
Query: 130 SENQFGEEGVEEMEKLMKS 148
+N + G + + S
Sbjct: 229 GDNNLTDAGAAALASALLS 247
Score = 41.6 bits (98), Expect = 6e-04
Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 32/186 (17%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLN-------------------- 355
+ KL L+ + + N + AL+ A +L+ L
Sbjct: 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77
Query: 356 ----------LNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
L+DN + G L ++L + SL L L + L G +AK L D
Sbjct: 78 TKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136
Query: 406 -TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 464
LE + L N + L KA++ LK++N++ N G+ G+ + + +K+
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196
Query: 465 ALVLED 470
L L +
Sbjct: 197 VLDLNN 202
Score = 32.7 bits (75), Expect = 0.35
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 370 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI--SVQGGLDLVK 427
+ L KL L +L L L A ++A L +L+++ L+ NE +G L++
Sbjct: 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ 75
Query: 428 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 460
+ L+++++S+N G +G +E L++S
Sbjct: 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSS 108
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 106 bits (266), Expect = 3e-25
Identities = 72/179 (40%), Positives = 98/179 (54%), Gaps = 4/179 (2%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
RL ++DLSDNAFG E L DL+ SS L LKLNNNGLG + KAL +
Sbjct: 93 RLQKVDLSDNAFGSEFPEELGDLISSST--DLVHLKLNNNGLGPIAGGRIGKALFHLAYN 150
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS-DA 344
K P L+V I GRNRLEN ++ AA+ + + L+ V++ QNGI G+T L+
Sbjct: 151 KKAADKP-KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLG 209
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
+ +L L+L DNT T +G+ L AL + L L L DCLL + G S+ + +
Sbjct: 210 LFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268
Score = 60.7 bits (147), Expect = 5e-10
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 13/189 (6%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALS-DAFEENKKLRHLNLNDNTITYKGAIPLGQ 60
AA+ + + L+ V++ QNGI G+T L+ + L L+L DNT T +G+ L
Sbjct: 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTD--NTTLEDVNLTCNEISVQGGLDL-VKA 117
AL + L L L DCLL + G S+ + + L + NE LD+ +
Sbjct: 237 ALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNE 296
Query: 118 MK--NKTKLKQINVSENQFGEEGV--EEMEKLMKSFGMAAALVLEDDEGECSDEEQDEES 173
+ L + + N+ E + E + + V+E EG+ EE +E
Sbjct: 297 FEQDAVPLLVDLERNGNRIKELADFGDYYEDIFEVVE-----VVEKQEGDVVTEESTDEE 351
Query: 174 EEENDSDAE 182
E+ E
Sbjct: 352 SEDEVEIDE 360
Score = 43.4 bits (102), Expect = 2e-04
Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 15/167 (8%)
Query: 308 EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT----- 362
E K + + + L V++ N I + L + +NLR +N +D
Sbjct: 17 EDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDE 76
Query: 363 -YKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG 421
Y + L +AL K P L ++L D S + ++ +T L + L N +
Sbjct: 77 LYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA 136
Query: 422 GLDLVKAM---------KNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
G + KA+ +K KL+ + N+ E L++S
Sbjct: 137 GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183
Score = 40.3 bits (94), Expect = 0.002
Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 15/160 (9%)
Query: 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTIT------YKGAIP 57
+ + L V++ N I + L + + LR +N +D Y +
Sbjct: 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVM 83
Query: 58 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 117
L +AL K P L ++L D S + ++ +T L + L N + G + KA
Sbjct: 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKA 143
Query: 118 M---------KNKTKLKQINVSENQFGEEGVEEMEKLMKS 148
+ +K KL+ + N+ E L++S
Sbjct: 144 LFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183
Score = 36.8 bits (85), Expect = 0.021
Identities = 53/255 (20%), Positives = 95/255 (37%), Gaps = 46/255 (18%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 286
LVE+DLS N G +E L +++ + + L++ N D +
Sbjct: 32 LVEVDLSGNTIGTEAMEELCNVIAN-----VRNLRVVN--------------FSDAFTGR 72
Query: 287 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 346
K+ L ML K L++V++ N L D
Sbjct: 73 DKDELYSNL---------------VMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLIS 117
Query: 347 ENKNLRHLNLNDNTITYKGAIPLGQALSKL---------PSLAILNLGDCLLKSAGASSI 397
+ +L HL LN+N + +G+AL L P L ++ G L++
Sbjct: 118 SSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS 177
Query: 398 AKYLTDNTTLEDVNLTCNEISVQGG--LDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 455
A L + L++V + N I +G L + + + L+ +++ +N F EG +
Sbjct: 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHS-LEVLDLQDNTFTLEGSRYLAD 236
Query: 456 LMKSFGMAAALVLED 470
+ + + L L D
Sbjct: 237 ALCEWNLLRELRLND 251
Score = 30.3 bits (68), Expect = 2.4
Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 12/170 (7%)
Query: 1 MLAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQ 60
ML K L+ V++ N L D + L HL LN+N + +G+
Sbjct: 83 MLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK 142
Query: 61 ALSKL---------PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGG 111
AL L P L ++ G L++ A L + L++V + N I +G
Sbjct: 143 ALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGV 202
Query: 112 --LDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 159
L + + + L+ +++ +N F EG + + + + L L D
Sbjct: 203 TMLAFLGLFYSHS-LEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND 251
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 38.2 bits (89), Expect = 0.005
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 112 LDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL-MKSFGMAAALVLEDDEGECSDEEQD 170
+ + K K L + F EE + EKL M + + DE + DEE++
Sbjct: 120 MGINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEE 179
Query: 171 EESEEENDSDAEGDNSNLSHNDSN 194
EE EEE++ + D+ + +D N
Sbjct: 180 EEEEEEDEDFDDDDDDD--DDDYN 201
>gnl|CDD|197686 smart00368, LRR_RI, Leucine rich repeat, ribonuclease inhibitor
type.
Length = 28
Score = 33.5 bits (78), Expect = 0.008
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 257 LEELKLNNNGLGITGCKLLSKALHD 281
L EL L+NN LG G + L++AL D
Sbjct: 4 LRELDLSNNKLGDEGARALAEALKD 28
Score = 30.8 bits (71), Expect = 0.087
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRS 251
L ELDLS+N G G LA+ L+
Sbjct: 3 SLRELDLSNNKLGDEGARALAEALKD 28
Score = 30.5 bits (70), Expect = 0.11
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 37 NKKLRHLNLNDNTITYKGAIPLGQALS 63
N LR L+L++N + +GA L +AL
Sbjct: 1 NPSLRELDLSNNKLGDEGARALAEALK 27
Score = 29.7 bits (68), Expect = 0.17
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 348 NKNLRHLNLNDNTITYKGAIPLGQALS 374
N +LR L+L++N + +GA L +AL
Sbjct: 1 NPSLRELDLSNNKLGDEGARALAEALK 27
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 37.2 bits (86), Expect = 0.012
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 159 DDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNA 199
DD+ S + DEE + ++D + + D++N +H D + + A
Sbjct: 274 DDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDNGA 314
Score = 29.9 bits (67), Expect = 2.8
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 162 GECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSH 197
G SD+++ S + ++ + D+ N ++D+N +H
Sbjct: 270 GYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNH 305
>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L;
Provisional.
Length = 337
Score = 36.7 bits (85), Expect = 0.018
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 162 GECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSL 221
GE DE+ D S+E++D D+S+ + +DSN S +N+ + + N + + + L
Sbjct: 277 GEAIDEDSDYSSDEDDDDYDSYDSSDSASSDSN-SDVDTNEEDDRGEKESNGAKSNELHL 335
Query: 222 KT 223
+
Sbjct: 336 TS 337
Score = 33.2 bits (76), Expect = 0.23
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDNSNL-SHNDSNHSHNASNQSHNNSNQSHNTS 214
ED + +++ D +S + +DS + NS++ ++ + + SN + SN+ H TS
Sbjct: 282 EDSDYSSDEDDDDYDSYDSSDSASSDSNSDVDTNEEDDRGEKESNGA--KSNELHLTS 337
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 35.8 bits (82), Expect = 0.040
Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 9/115 (7%)
Query: 120 NKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDS 179
+ ++ E++ E VEE E + KS D EC EE++ E EEE
Sbjct: 109 ETVEEEEK--EESREEREEVEETEGVTKSE----QKNDWRDAEECQKEEKEPEPEEEEKP 162
Query: 180 ---DAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELD 231
E +N + H+ N ++ Q + K +EL+
Sbjct: 163 KRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELE 217
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 35.7 bits (82), Expect = 0.046
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 21/89 (23%)
Query: 118 MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEEN 177
MK + ++++ G+E EE E+D+ E D++ D+E E+++
Sbjct: 32 MKKENAIRKL-------GKEAEEEAM-------------EEEDDDEEDDDDDDDEDEDDD 71
Query: 178 DSDAEGDNSNLSHNDSNHSHNASNQSHNN 206
D D + D+ + +DS H+ S+ N
Sbjct: 72 DDDDDEDDEDEDDDDST-LHDDSSADDGN 99
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The CAF-1
or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression in
addition to DNA-based checkpoints.
Length = 76
Score = 32.6 bits (75), Expect = 0.052
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEG 183
E++EGE + E +E+ EE++D D +G
Sbjct: 50 EEEEGEDLESEDEEDEEEDDDDDMDG 75
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 31.7 bits (73), Expect = 0.073
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 323 LERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 382
L+ +++ N + + AF+ NL+ L+L+ N +T +I A S LPSL L
Sbjct: 2 LKSLDLSNNRLTVIP----DGAFKGLPNLKVLDLSGNNLT---SISPE-AFSGLPSLRSL 53
Query: 383 NLGDCLL 389
+L L
Sbjct: 54 DLSGNNL 60
Score = 31.0 bits (71), Expect = 0.15
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 12 LEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 71
L+ +++ N + + AF+ L+ L+L+ N +T +I A S LPSL L
Sbjct: 2 LKSLDLSNNRLTVIP----DGAFKGLPNLKVLDLSGNNLT---SISPE-AFSGLPSLRSL 53
Query: 72 NLGDCLL 78
+L L
Sbjct: 54 DLSGNNL 60
Score = 28.7 bits (65), Expect = 1.0
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 409
NL+ L+L++N +T A LP+L +L+L L S + + +L
Sbjct: 1 NLKSLDLSNNRLTVIP----DGAFKGLPNLKVLDLSGNNLTSISPEA----FSGLPSLRS 52
Query: 410 VNLTCNEI 417
++L+ N +
Sbjct: 53 LDLSGNNL 60
Score = 27.5 bits (62), Expect = 2.8
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 98
L+ L+L++N +T A LP+L +L+L L S + + +L
Sbjct: 1 NLKSLDLSNNRLTVIP----DGAFKGLPNLKVLDLSGNNLTSISPEA----FSGLPSLRS 52
Query: 99 VNLTCNEI 106
++L+ N +
Sbjct: 53 LDLSGNNL 60
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 34.3 bits (79), Expect = 0.13
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 154 ALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNT 213
AL +ED E DEE+++E EEE + + EG + H+D + + N+
Sbjct: 378 ALEIEDANTERDDEEEEDEEEEEEEDEDEGPSK--EHSDDE-EFEEDDVESKYEDSDGNS 434
Query: 214 S 214
S
Sbjct: 435 S 435
>gnl|CDD|222927 PHA02774, PHA02774, E1; Provisional.
Length = 613
Score = 34.5 bits (80), Expect = 0.13
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 156 VLEDDEGECSDEEQDEESEEENDSDAEG--DNSNLSHNDSNHSH 197
L + E ECSD E + E + SD D++ + ++ +
Sbjct: 17 FLVEAEAECSDGEDELEDLFDTGSDISDLIDDAEVVQGGNSLAL 60
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 34.6 bits (80), Expect = 0.14
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 131 ENQFGEEGV------EEMEKLMKSFGM---AAALVLEDDEGECSDEEQDEESEEENDSDA 181
+N FG + V + E+L L +DD+ E SDEE +E S+ E+D D
Sbjct: 90 DNVFGSDQVVIFDDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDD 149
Query: 182 EGD 184
+ D
Sbjct: 150 DDD 152
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 30.2 bits (69), Expect = 0.17
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 349 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
NL L+L++N IT +P LS LP+L L+L +
Sbjct: 1 TNLETLDLSNNQIT---DLP---PLSNLPNLETLDLSGNKITD 37
Score = 29.0 bits (66), Expect = 0.48
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80
L L+L++N IT +P LS LP+L L+L +
Sbjct: 1 TNLETLDLSNNQIT---DLP---PLSNLPNLETLDLSGNKITD 37
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 31.5 bits (72), Expect = 0.38
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 136 EEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNS 186
EE +E+EK +K A L+ E+++ E ++ + E++E+ D + EG
Sbjct: 59 EERKQELEKQLKERKEALKLLEEENDDE--EDAETEDTEDVEDDEWEGFPE 107
Score = 28.1 bits (63), Expect = 5.1
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 136 EEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDE---------ESEEENDSDAEG 183
E+ ++E ++ +K + + + D E DE EE D +
Sbjct: 66 EKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDK 122
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 31.5 bits (72), Expect = 0.47
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 151 MAAALVLEDDEGECSDEEQDEESEEENDSDAE 182
+A+ DD+ E +EE DEE ++E++S+ E
Sbjct: 107 VASEEDESDDDEEDEEEEDDEEDDDEDESEEE 138
>gnl|CDD|218379 pfam05009, EBV-NA3, Epstein-Barr virus nuclear antigen 3 (EBNA-3).
This family contains EBNA-3A, -3B, and -3C which are
latent infection nuclear proteins important for
Epstein-Barr virus (EBV)-induced B-cell immortalisation
and the immune response to EBV infection.
Length = 254
Score = 31.6 bits (72), Expect = 0.67
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 150 GMAAALVLEDD----EGECSDEEQDEESEEENDSDAEGDNSNLSHNDSN 194
L GE D+ E S E DS++E D+ L +
Sbjct: 192 AFLRGQALGLSALRTPGEPDDDATVETSSESEDSESESDDEELPYIVPR 240
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 31.6 bits (72), Expect = 0.80
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDN 185
EDD E DE++++E EEE + D EGD
Sbjct: 292 EDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 28.9 bits (65), Expect = 6.3
Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 136 EEGVEEMEKLMKSFG-----MAAALVLEDDEGECSD-----EEQDEESEEENDSDAEGDN 185
+E +++++K G V+ DE + + EE++EE + D + ++
Sbjct: 246 GAALEAIKEVIKKKGGDFKVKGEPEVVGGDEEDLEELLEKAEEEEEEDDYSESEDEDEED 305
Query: 186 SNLSHNDSN 194
+ + +
Sbjct: 306 EDEEEEEDD 314
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 31.9 bits (72), Expect = 0.83
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAE 182
E++E E +EE++EE EEE + + E
Sbjct: 867 EEEEEEEEEEEEEEEEEEEEEEENE 891
Score = 30.3 bits (68), Expect = 2.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDNSNLS 189
E++E E +EE++EE EEE + + E + LS
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEEPLS 895
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 32.0 bits (72), Expect = 0.92
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 159 DDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNA----SNQSHNNSNQSHNTS 214
+ E + +SEE++D E DN + S D S S S + ++ + +
Sbjct: 102 NTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKKTQPGVSTSSGSTTSGTDLNT 161
Query: 215 NQSHMSLKTGARLVELDLSDNAFGPIGVEGL 245
QS L + D + + G +GV GL
Sbjct: 162 KQSQTGLGASGSHAQQDPAVSQSGVVGVPGL 192
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 30.7 bits (69), Expect = 0.96
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 118 MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALV---LEDDEGECSDEEQDEESE 174
M K K++ V ++ E+ S +ED E +E+++ E
Sbjct: 1 MPPKGNAKKLKVRPPP-----TKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEV 55
Query: 175 EENDSDAEGDNSNLSHNDS 193
EE + + S+ S + S
Sbjct: 56 EEETAASSKAPSSSSKSSS 74
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 31.4 bits (71), Expect = 1.3
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQS 203
E++E E +EE+++ESEEE D E + + N S S++
Sbjct: 447 EEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEG 492
Score = 29.9 bits (67), Expect = 3.7
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQ 209
+DE E + E D SEEE + +EGD + N+ + ++
Sbjct: 467 GEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSE 518
>gnl|CDD|225191 COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid
transport and metabolism].
Length = 385
Score = 31.1 bits (71), Expect = 1.4
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 162 GECSDEEQDEESEEENDSDAEGDNSNLSHNDS 193
G + +E +N+S GDN + H DS
Sbjct: 326 GSAYPFNVEGGAEMQNESAIHGDNVSDVHVDS 357
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 30.8 bits (69), Expect = 1.4
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 119 KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEEND 178
+N +L+ +N+ E G ++ E+ + + + E D+++D E ++E +
Sbjct: 85 ENDVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKE 144
Query: 179 SDAEGDNSNLS 189
SDAEGD + L+
Sbjct: 145 SDAEGDENELA 155
>gnl|CDD|205694 pfam13516, LRR_6, Leucine Rich repeat.
Length = 24
Score = 27.2 bits (61), Expect = 1.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 348 NKNLRHLNLNDNTITYKGAIPLGQ 371
NL L+L+ N I +GA L +
Sbjct: 1 LTNLTSLDLSGNQIGDEGASALAK 24
Score = 26.0 bits (58), Expect = 4.0
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 37 NKKLRHLNLNDNTITYKGAIPLGQ 60
L L+L+ N I +GA L +
Sbjct: 1 LTNLTSLDLSGNQIGDEGASALAK 24
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 30.8 bits (69), Expect = 1.6
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 135 GEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSN 187
E+ + + L K G D E S+ E++E SE E+D D + DN
Sbjct: 221 SEKEKTKKKDLEKWLG-------SDQSMETSESEEEESSESESDEDEDEDNKG 266
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 31.1 bits (70), Expect = 1.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHS 196
E+D SD ++ E E E+D + +S +S N+++ S
Sbjct: 3843 EEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDS 3881
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 30.4 bits (69), Expect = 1.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 132 NQFGEE----GVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNS 186
+GEE G+ +E L K E ++G SD++ DEE E E + D + D+
Sbjct: 58 KGYGEEEVVDGIPGLELLEKWK-EEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDE 115
>gnl|CDD|177447 PHA02664, PHA02664, hypothetical protein; Provisional.
Length = 534
Score = 30.7 bits (69), Expect = 2.0
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHN 212
++D+ + E DE ++ E+DSD+ S S D + S + S ++S H+
Sbjct: 453 DEDDMDEQ-ESGDERADGEDDSDSSYSYSTTSSEDESDSADDSWGDESDSGIEHD 506
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 30.3 bits (68), Expect = 2.1
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 156 VLEDDEGECSDEEQDEESEEENDSDAEGDN 185
VLE +E + S EE++EESEEE ++D+E D
Sbjct: 4 VLELEEEDESGEEEEEESEEEEETDSEDDM 33
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 30.6 bits (69), Expect = 2.1
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 15/82 (18%)
Query: 112 LDLVKAMKNKTKLKQINVSENQFGEEGVE-EMEKLMKSFGMAAALVLEDDEGECSDEEQD 170
LD++KA +NK++ +Q+ E + ++ E + + ED+ D E +
Sbjct: 629 LDVLKADENKSRHQQLFEGEEEDEDDLEETDDD--------------EDECEAIEDSESE 674
Query: 171 EESEEENDSDAEGDNSNLSHND 192
ES+ E+ + E ++ ++
Sbjct: 675 SESDGEDGEEDEQEDDAEANEG 696
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF)
Superfamily; Provisional.
Length = 844
Score = 30.6 bits (69), Expect = 2.2
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 147 KSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEG-----DNSNLSHNDSNHSHNASN 201
SF + +DD+ E +D+E + N + E L D + A+N
Sbjct: 77 ASFLNQRKSLDDDDDDEFDFLYEDDEDDAGNATSGESSTDDDSLLELPDRDEDADTQANN 136
Query: 202 QSHNNSNQSHNTSNQSHMSLK 222
N+ +Q ++++Q+ LK
Sbjct: 137 DQTNDFDQDDSSNSQTDQGLK 157
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 30.4 bits (68), Expect = 2.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 136 EEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNS 186
+E E E++ + + E DE E SDE ++ SE+E+++D+ +
Sbjct: 929 DESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEED 979
Score = 28.4 bits (63), Expect = 9.6
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 122 TKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDA 181
T +K I F E+G G + +V DDE DE ++E SE E SD
Sbjct: 902 TIMKSIMKDPISFFEDG-----------GWSFLMVGSDDES---DESEEEVSEYEASSDD 947
Query: 182 EGDNSNLSHNDSNHSHNAS-NQSHNNS 207
E D ++ S + S ++S N+S
Sbjct: 948 ESDETDEDEESDESSEDLSEDESENDS 974
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 29.1 bits (65), Expect = 2.4
Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQS 217
+ ++ + E++ E E E ++ + +++N + N + + T+
Sbjct: 1 DYNDMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRPRKTT--P 58
Query: 218 HMSLKTGARLV---ELDLSDNAFGPIGVEGLADLLRSSCCFALEELK 261
+M+ AR++ L +S NA + +EG D L A++EL+
Sbjct: 59 YMTKYERARILGTRALQISMNAPVMVELEGETDPLE----IAMKELR 101
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 30.0 bits (67), Expect = 2.6
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQS 210
++DE E +EE++E EEN+ G ++N + D + + + +S
Sbjct: 136 DEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDNGEEGEEES 188
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 30.2 bits (69), Expect = 2.6
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 94 TTLEDV-NLTCNEISVQGGLD--LVKAMKNKTK--LKQINVSENQFGEEGVEEMEKLMKS 148
++LE++ + E+ G D V+ ++ + K L+ +++ + + + +E L +
Sbjct: 378 SSLEELAYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRE 437
Query: 149 FGMAAA----LVLEDDEGECSDEEQDEESEEE 176
A LED + DE D E +EE
Sbjct: 438 LAFKLAEKGIKTLEDLAEQAVDELIDIEGDEE 469
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 30.4 bits (69), Expect = 2.9
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHND 192
+DD+ E +E+ D EEE++ D + D+ + +
Sbjct: 338 DDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEE 372
>gnl|CDD|213965 TIGR04352, HprK_rel_A, HprK-related kinase A. A number of protein
families resemble HPr kinase (see TIGR00679) but do not
belong to that system. They include this family, which
appears instead to be the marker for a different type of
gene neighborhood, in which one of the conserved
neighboring proteins resembles (but is distinct from)
PqqD.
Length = 280
Score = 29.6 bits (67), Expect = 3.1
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 230 LDLSDNAF-----GPIGVEGLADLLRSSCCFALE 258
+ L++N+F G +G + +A L+ C+
Sbjct: 233 MRLAENSFNYEVLGEVGFDAVARLVDRCDCYEFS 266
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The domain
is found in the primary vegetative sigma factor. The
function of this domain is unclear and can be removed
without loss of function.
Length = 211
Score = 29.5 bits (67), Expect = 3.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 151 MAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNS 186
AAA+ E DE + D++ D+E E+E D + E D
Sbjct: 40 TAAAIESELDEEDLEDDDDDDEDEDE-DDEEEADLG 74
>gnl|CDD|173970 cd08205, RuBisCO_IV_RLP, Ribulose bisphosphate carboxylase like
proteins, Rubisco-Form IV. Ribulose bisphosphate
carboxylase (Rubisco) plays an important role in the
Calvin reductive pentose phosphate pathway. It catalyzes
the primary CO2 fixation step. Rubisco is activated by
carbamylation of an active site lysine, stabilized by a
divalent cation, which then catalyzes the proton
abstraction from the substrate ribulose 1,5 bisphosphate
(RuBP) and leads to the formation of two molecules of
3-phosphoglycerate. Members of the Rubisco family can be
divided into 4 subgroups, Form I-IV, which differ in
their taxonomic distribution and subunit composition.
Form I-III have Rubisco activity, while Form IV, also
called Rubisco-like proteins (RLP), are missing critical
active site residues and therefore do not catalyze CO2
fixation. They are believed to utilize a related
enzymatic mechanism, but have divergent functions, like
for example 2,3-diketo-5-methylthiopentyl-1-phosphate
enolase or 5-methylthio-d-ribulose 1-phosphate
isomerase.
Length = 367
Score = 29.8 bits (68), Expect = 3.5
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
Query: 220 SLKTGARLVELDLSDN---AF-GP-IGVEGLADLL 249
SL G +LV+L+L D+ AF GP G+EGL LL
Sbjct: 91 SLLPGIKLVDLELPDSLLAAFPGPRFGIEGLRRLL 125
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 30.0 bits (67), Expect = 3.8
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 132 NQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHN 191
N GEE E+ + G CS + + ++ ++ + EG+ NL
Sbjct: 3 NHIGEEASAEVLSGRNNTGDDGVHGGSCHPSHCSPQPRGDKFNDKFEFAGEGEKPNLL-V 61
Query: 192 DSNHSHNASNQSHNNSNQSHNTSNQSHMS 220
D+N +H + S NNS ++ N + ++ S
Sbjct: 62 DANENHINTRSSDNNSCENANMNRDANSS 90
>gnl|CDD|197543 smart00148, PLCXc, Phospholipase C, catalytic domain (part); domain
X. Phosphoinositide-specific phospholipases C. These
enzymes contain 2 regions (X and Y) which together form
a TIM barrel-like structure containing the active site
residues. Phospholipase C enzymes (PI-PLC) act as signal
transducers that generate two second messengers,
inositol-1,4,5-trisphosphate and diacylglycerol. The
bacterial enzyme appears to be a homologue of the
mammalian PLCs.
Length = 143
Score = 28.4 bits (64), Expect = 4.0
Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 12/52 (23%)
Query: 203 SHNNSNQSHNTSNQSHM------------SLKTGARLVELDLSDNAFGPIGV 242
SH SHNT +L G R VELD D G +
Sbjct: 6 SHYFIPSSHNTYLTGKQLWGESSVEGYIQALDAGCRCVELDCWDGPDGEPVI 57
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association with
mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 27.8 bits (62), Expect = 4.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 159 DDEGECSDEEQDEESEEENDSDAEGDNSNLSHND 192
D E E DEE++EE EE++ D ++ + +
Sbjct: 3 DTEAEVDDEEEEEEEEEDDLEDLSDEDEFIDEAE 36
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 29.3 bits (65), Expect = 4.8
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 131 ENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEE---------NDSDA 181
EN E + L G A ED++ EC D E +EE EEE N DA
Sbjct: 64 ENSETERPRDLTAALFAEAGEEA--EEEDNDRECPDTEAEEEDEEEEIEAPDPEVNPLDA 121
Query: 182 EG 183
EG
Sbjct: 122 EG 123
>gnl|CDD|148632 pfam07136, DUF1385, Protein of unknown function (DUF1385). This
family contains a number of hypothetical bacterial
proteins of unknown function approximately 300 residues
in length. Some family members are predicted to be
metal-dependent.
Length = 235
Score = 28.7 bits (65), Expect = 5.1
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 125 KQINVSENQFGEEGVEEMEKLMKSFGMAAALVL 157
K +N S EE E++ K + + +L
Sbjct: 19 KALNFSAEFADEEEEEKLSKWEMALTVILSLAF 51
Score = 28.7 bits (65), Expect = 5.1
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 436 KQINVSENQFGEEGVEEMEKLMKSFGMAAALVL 468
K +N S EE E++ K + + +L
Sbjct: 19 KALNFSAEFADEEEEEKLSKWEMALTVILSLAF 51
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 29.3 bits (66), Expect = 5.3
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 126 QINVSENQFGEEGVEEMEKLMKSF---GMAAALVLEDDEGECSDEEQDEESEEENDSDAE 182
Q+NV + + +K ED+E E +E +EE E+++ +
Sbjct: 339 QLNVKLRNPSTKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGS 398
Query: 183 GDNSNLSHNDSNHSHNASNQSHNN 206
+ S S+ + S +
Sbjct: 399 QSREDGSSESSSDVGSDSESKADK 422
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel, four-helix
bundle structure with a large hydrophobic patch in which
23 residues of one monomer form van der Waals contacts
with the other monomer. This CENP-B dimer configuration
may be suitable for capturing two distant CENP-B boxes
during centromeric heterochromatin formation.
Length = 101
Score = 27.4 bits (60), Expect = 5.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGD 184
E+D SDEE+D++ E+E D D + D
Sbjct: 9 EEDSDSDSDEEEDDDDEDEEDDDEDDD 35
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved in
conjugation with cellular fusion (mating) and invasive
growth. A high throughput localisation study has
localised RXT2 to the nucleus.
Length = 141
Score = 28.1 bits (63), Expect = 5.8
Identities = 9/28 (32%), Positives = 21/28 (75%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDN 185
++D G+ D+++D+E +EE D++ + +N
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDEN 75
>gnl|CDD|237078 PRK12366, PRK12366, replication factor A; Reviewed.
Length = 637
Score = 29.2 bits (66), Expect = 5.8
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 123 KLKQINVSENQFGEEGVEEMEKLMKSFG-----MAAALVLEDDEGECSDEEQDEESEEEN 177
KLKQ + E EE +++ + ++ G AA +++ + G + Q+EE E+
Sbjct: 7 KLKQK-ILEKISEEELEKKINEKIEENGGFLGEEAALMMVAQELGIDIEYGQEEEEEDFK 65
Query: 178 DSDAEGDNSNLS 189
SD E N+
Sbjct: 66 ISDIEEGQINVE 77
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 29.0 bits (65), Expect = 5.9
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 26/124 (20%)
Query: 343 DAFEENKNLRHLNLNDNTIT---YKGAIPLGQALS--------KLP-------SLAILNL 384
D F + +LR+LNL++N T +G+IP + L ++P SL +L+L
Sbjct: 112 DIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL 171
Query: 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444
G +L I LT+ T+LE + L N++ Q +L + MK+ LK I + N
Sbjct: 172 GGNVL----VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKS---LKWIYLGYNN 223
Query: 445 FGEE 448
E
Sbjct: 224 LSGE 227
Score = 29.0 bits (65), Expect = 7.4
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 26/124 (20%)
Query: 32 DAFEENKKLRHLNLNDNTIT---YKGAIPLGQALS--------KLP-------SLAILNL 73
D F + LR+LNL++N T +G+IP + L ++P SL +L+L
Sbjct: 112 DIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL 171
Query: 74 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 133
G +L I LT+ T+LE + L N++ Q +L + MK+ LK I + N
Sbjct: 172 GGNVL----VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKS---LKWIYLGYNN 223
Query: 134 FGEE 137
E
Sbjct: 224 LSGE 227
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 28.6 bits (64), Expect = 5.9
Identities = 9/46 (19%), Positives = 23/46 (50%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQS 203
D + DE+ +E E+++ + E S+ S ++ + + + +S
Sbjct: 218 SADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMES 263
Score = 28.2 bits (63), Expect = 8.9
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQS 203
EDD E D++Q EE EE SD+ ++S+ S + + ++
Sbjct: 227 EDDPKEDEDDDQGEE-EESGSSDSLSEDSDASSEEMESGEMEAAEA 271
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 28.8 bits (64), Expect = 6.5
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 115 VKAMKNKTKLKQINVSENQF---GEEG---VEEMEKLMKSFGMAAALVLEDDEGECSDEE 168
VK + KT + + V+ GEE E E+L F + ++ E E EE
Sbjct: 285 VKPVIGKTFQEMVKVAAKDLILGGEEKEPKQESQEQLFNPFAIDEEMLEETQE---QQEE 341
Query: 169 QDEESEEENDS 179
++ E EEEND+
Sbjct: 342 EENEEEEENDT 352
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 28.6 bits (64), Expect = 7.8
Identities = 9/70 (12%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 145 LMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSH 204
+ A A +D + + + + +S++ ND + D S+ + +++++ ++ ++
Sbjct: 18 PTLTSPTAYA---DDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNN 74
Query: 205 NNSNQSHNTS 214
+ + ++S
Sbjct: 75 DKKFSTIDSS 84
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 28.5 bits (64), Expect = 7.8
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 140 EEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDN 185
E+M + +LE+ + + +E DE + E +S+ E N
Sbjct: 225 EKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPIN 270
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 28.2 bits (63), Expect = 8.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 157 LEDDEGECSDEEQDEESEEENDSDAEGDNSN 187
ED E + E++DEESEEEN+ + E +
Sbjct: 75 SEDKEDKGDAEKEDEESEEENEEEDEESSDE 105
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell surface
and is extremely large (although apparently lacking in
repeat structure) and is important for the process of
invasion of the RBCs by the parasite. These proteins are
found in P. falciparum, P. vivax and P. yoelii.
Length = 2757
Score = 28.5 bits (63), Expect = 9.4
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 20/131 (15%)
Query: 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 143
+ IA+ D T+LE+V I++ G +L K L++I+ E + E ++ ME
Sbjct: 1197 NEIAEIEKDKTSLEEVK----GINLSYGKNL-----GKLFLEKID-EEKKKSEHMIKAME 1246
Query: 144 KLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQS 203
++ DE + E + E E D AE + N+SH+D H S +
Sbjct: 1247 AYIEDL----------DEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKH 1296
Query: 204 HNNSNQSHNTS 214
N + S
Sbjct: 1297 DENISDIREKS 1307
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.128 0.349
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,790,280
Number of extensions: 2173002
Number of successful extensions: 3405
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2934
Number of HSP's successfully gapped: 177
Length of query: 472
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 372
Effective length of database: 6,502,202
Effective search space: 2418819144
Effective search space used: 2418819144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (27.4 bits)