RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3611
(472 letters)
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 218 bits (557), Expect = 9e-67
Identities = 100/390 (25%), Positives = 160/390 (41%), Gaps = 58/390 (14%)
Query: 93 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 152
++E +L + I+ + + + +K+I +S N G E
Sbjct: 3 RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAAR-----------W 51
Query: 153 AALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHN 212
+ + +L + S + + +
Sbjct: 52 LSENIAS-------------------------KKDLEI---------AEFSDIFTGRVKD 77
Query: 213 TSNQSHMS----LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG 268
++ L +L + LSDNAFGP E L D L LE L L+NNGLG
Sbjct: 78 EIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP--LEHLYLHNNGLG 135
Query: 269 ITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEM 328
+++AL + + K + +P L+ I GRNRLEN K A F+ + L V+M
Sbjct: 136 PQAGAKIARALQELAVNKKAKNAP-PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 194
Query: 329 PQNGIYHVGIT-ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC 387
QNGI GI L + + L+ L+L DNT T+ G+ L AL P+L L L DC
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254
Query: 388 LLKSAGASSIAKYLTD--NTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSENQ 444
LL + GA+++ + N L+ + L NEI + L + K L + ++ N+
Sbjct: 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314
Query: 445 FGEEG--VEEMEKLMKSFGMAAALVLEDDE 472
F EE V+E+ ++ + G L+D E
Sbjct: 315 FSEEDDVVDEIREVFSTRGRGELDELDDME 344
Score = 136 bits (345), Expect = 4e-36
Identities = 60/185 (32%), Positives = 93/185 (50%), Gaps = 6/185 (3%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGIT-ALSDAFEENKKLRHLNLNDNTITYKGAIPLGQ 60
A F+ + L V+M QNGI GI L + ++L+ L+L DNT T+ G+ L
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTD--NTTLEDVNLTCNEISVQGGLDLVKAM 118
AL P+L L L DCLL + GA+++ + N L+ + L NEI + L +
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298
Query: 119 KNK-TKLKQINVSENQFGEEG--VEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEE 175
K L + ++ N+F EE V+E+ ++ + G L+D E +EE+DEE E
Sbjct: 299 DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEA 358
Query: 176 ENDSD 180
E+ S
Sbjct: 359 ESQSP 363
Score = 136 bits (344), Expect = 5e-36
Identities = 64/389 (16%), Positives = 120/389 (30%), Gaps = 62/389 (15%)
Query: 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLA 69
++E + + I ++ E+ ++ + L+ NTI + A L + ++ L
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63
Query: 70 ILNLGDCLLKS------AGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTK 123
I D + + L L V L+ N L+ + T
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123
Query: 124 LKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEG 183
L+ + + N G + + +A AL +E +
Sbjct: 124 LEHLYLHNNGLGPQAGAK---------IARAL------------------QELAVNKKAK 156
Query: 184 DNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243
+ L N ++ + + ++ L + + N P G+E
Sbjct: 157 NAPPLRSII----------CGRNRLENGSMKEWAKT-FQSHRLLHTVKMVQNGIRPEGIE 205
Query: 244 G-LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 302
L + L C L+ L L +N G L+ AL L+
Sbjct: 206 HLLLEGLAY--CQELKVLDLQDNTFTHLGSSALAIALKSW----------PNLRELGLND 253
Query: 303 NRLENEGAKMLAAVFKKL--KTLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLNDN 359
L GA + F KL L+ + + N I + L +E +L L LN N
Sbjct: 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313
Query: 360 TITYKGAI--PLGQALSKLPSLAILNLGD 386
+ + + + + S + L D
Sbjct: 314 RFSEEDDVVDEIREVFSTRGRGELDELDD 342
Score = 88.6 bits (220), Expect = 3e-19
Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 15/154 (9%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTI------TYKGA 55
+ AV + +++ + + N I LS+ K L +D +
Sbjct: 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83
Query: 56 IPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLV 115
L QAL K P L + L D + +L+ +T LE + L N + Q G +
Sbjct: 84 RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143
Query: 116 KA---------MKNKTKLKQINVSENQFGEEGVE 140
+A KN L+ I N+ ++
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177
Score = 87.8 bits (218), Expect = 4e-19
Identities = 33/155 (21%), Positives = 51/155 (32%), Gaps = 15/155 (9%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHV------GITALSDAFEENKKLRHLNLNDNTITYKGA 55
L+ K LE E V + L A + KL + L+DN
Sbjct: 52 LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111
Query: 56 IPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD---------NTTLEDVNLTCNEI 106
PL LSK L L L + L + IA+ L + L + N +
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171
Query: 107 SVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE 141
+ K ++ L + + +N EG+E
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206
Score = 87.5 bits (217), Expect = 5e-19
Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 10/150 (6%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEE---------NKKLRHLNLNDNTITY 52
L K LEH+ + NG+ ++ A +E LR + N +
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173
Query: 53 KGAIPLGQALSKLPSLAILNLGDCLLKSAGASS-IAKYLTDNTTLEDVNLTCNEISVQGG 111
+ L + + ++ G + + L L+ ++L N + G
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233
Query: 112 LDLVKAMKNKTKLKQINVSENQFGEEGVEE 141
L A+K+ L+++ +++ G
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSARGAAA 263
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 182 bits (463), Expect = 3e-52
Identities = 74/445 (16%), Positives = 150/445 (33%), Gaps = 36/445 (8%)
Query: 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLA 69
++ +++ + L ++ + + L+D +T + AL P+LA
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPL---LQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59
Query: 70 ILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQIN 128
LNL L G + + L + ++ ++L ++ G L ++ L++++
Sbjct: 60 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119
Query: 129 VSENQFGEEGVEEMEKLMKSFGMA-AALVLEDDEGECSDEEQDEESEEENDSDAEGDNSN 187
+S+N G+ G++ + + + L LE CS E + +
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY----CSLSAASCEPL----ASVLRAKPD 171
Query: 188 LSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLAD 247
NN + +L L L L
Sbjct: 172 FKELTV----------SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221
Query: 248 LLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLEN 307
++ S L EL L +N LG G L L L+ +
Sbjct: 222 IVASKAS--LRELALGSNKLGDVGMAELCPGLLHPSSR---------LRTLWIWECGITA 270
Query: 308 EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEE-NKNLRHLNLNDNTITYKGA 366
+G L V + ++L+ + + N + G L + E L L + + T
Sbjct: 271 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330
Query: 367 IPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDL 425
L++ L L + + L+ AG + + L + L + L ++S L
Sbjct: 331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL 390
Query: 426 VKAMKNKTKLKQINVSENQFGEEGV 450
+ L+++++S N G+ G+
Sbjct: 391 AATLLANHSLRELDLSNNCLGDAGI 415
Score = 176 bits (448), Expect = 3e-50
Identities = 92/449 (20%), Positives = 158/449 (35%), Gaps = 46/449 (10%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEE-NKKLRHLNLNDNTITYKGAIPLGQ 60
+++ + L + + N + VG+ + + + K++ L+L + +T G L
Sbjct: 48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMK 119
L LP+L L+L D LL AG + + L D LE + L +S L ++
Sbjct: 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167
Query: 120 NKTKLKQINVSENQFGEEGVEE-MEKLMKSFGMAAALVLED----DEGECSDEEQDEESE 174
K K++ VS N E GV + L S AL LE + C D
Sbjct: 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN-CRD-------- 218
Query: 175 EENDSDAEGDNSNLSHND--SNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDL 232
++L SN + ++ ++ L +
Sbjct: 219 ---LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT------------LWI 263
Query: 233 SDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSP 292
+ G L +LR+ L+EL L N LG G +LL + L +
Sbjct: 264 WECGITAKGCGDLCRVLRAKES--LKELSLAGNELGDEGARLLCETLLEPG--------- 312
Query: 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEE-NKNL 351
L+ ++V + + L +++ N + G+ L + L
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 372
Query: 352 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDV 410
R L L D ++ L L SL L+L + L AG + + + LE +
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432
Query: 411 NLTCNEISVQGGLDLVKAMKNKTKLKQIN 439
L S + L K+K L+ I+
Sbjct: 433 VLYDIYWSEEMEDRLQALEKDKPSLRVIS 461
Score = 168 bits (428), Expect = 3e-47
Identities = 73/428 (17%), Positives = 144/428 (33%), Gaps = 67/428 (15%)
Query: 37 NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 96
+ ++ L++ ++ L L + + L DC L A I+ L N L
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQV---VRLDDCGLTEARCKDISSALRVNPAL 58
Query: 97 EDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 155
++NL NE+ G +++ ++ K++++++ G + +++
Sbjct: 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT------- 111
Query: 156 VLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHND--SNHSHNASNQSHNNSNQSHNT 213
L N +A Q
Sbjct: 112 -----------------------------LPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142
Query: 214 SNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCK 273
L +L L + E LA +LR+ +EL ++NN + G +
Sbjct: 143 R------------LEKLQLEYCSLSAASCEPLASVLRAKPD--FKELTVSNNDINEAGVR 188
Query: 274 LLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGI 333
+L + L D SP L+ + ++ + L + +L + + N +
Sbjct: 189 VLCQGLKD---------SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239
Query: 334 YHVGITALSDAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 392
VG+ L + LR L + + IT KG L + L SL L+L L
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299
Query: 393 GASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 451
GA + + L + LE + + + + L ++ +S N+ + GV
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359
Query: 452 EMEKLMKS 459
E+ + +
Sbjct: 360 ELCQGLGQ 367
Score = 143 bits (364), Expect = 3e-38
Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 14/242 (5%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
+ + A L EL L N G +G+ L L L L + G+ GC L + L
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSS-RLRTLWIWECGITAKGCGDLCRVLR 281
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK-LKTLERVEMPQNGIYHVGIT 339
+LK N L +EGA++L + LE + + +
Sbjct: 282 AKE----------SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK-LPSLAILNLGDCLLKSAGASSIA 398
S +N+ L L +++N + G L Q L + L +L L DC + + SS+A
Sbjct: 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391
Query: 399 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVEEMEKLM 457
L N +L +++L+ N + G L LV++++ L+Q+ + + + EE + ++ L
Sbjct: 392 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 451
Query: 458 KS 459
K
Sbjct: 452 KD 453
Score = 135 bits (341), Expect = 4e-35
Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 14/234 (5%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
L+ EL +S+N GV L L+ S C LE LKL + G+ C+ L +
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC-QLEALKLESCGVTSDNCRDLCGIVA 224
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK-LKTLERVEMPQNGIYHVGIT 339
+L+ G N+L + G L L + + + GI G
Sbjct: 225 SK----------ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG 274
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK-LPSLAILNLGDCLLKSAGASSIA 398
L ++L+ L+L N + +GA L + L + L L + C +A S +
Sbjct: 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334
Query: 399 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVE 451
L N L ++ ++ N + G +L + + + L+ + +++ +
Sbjct: 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS 388
Score = 87.7 bits (218), Expect = 7e-19
Identities = 30/149 (20%), Positives = 62/149 (41%), Gaps = 2/149 (1%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
A + L+ + V + G+ +S A N L LNL N + G + Q
Sbjct: 20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79
Query: 62 LSKL-PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK- 119
L + L+L +C L AG ++ L TL++++L+ N + G L + +
Sbjct: 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139
Query: 120 NKTKLKQINVSENQFGEEGVEEMEKLMKS 148
+ +L+++ + E + ++++
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRA 168
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 150 bits (381), Expect = 2e-41
Identities = 66/408 (16%), Positives = 127/408 (31%), Gaps = 67/408 (16%)
Query: 20 NGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGDCLL 78
H G + + + L+L+ N + + L QA + P S+ LNL L
Sbjct: 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL 63
Query: 79 KSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGE 136
+ + + L + +NL+ N +S + +LVK + + +++ N F
Sbjct: 64 GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123
Query: 137 EGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHND--SN 194
+ E A ++++ + N
Sbjct: 124 KSSSE---------FKQAF--------------------------SNLPASITSLNLRGN 148
Query: 195 HSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCC 254
S+ + + S L+L N LA L S
Sbjct: 149 DLGIKSSDELIQILAAIPANVNS------------LNLRGNNLASKNCAELAKFLASIPA 196
Query: 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLA 314
++ L L+ N LG+ L+ P + N L + L
Sbjct: 197 -SVTSLDLSANLLGLKSYAELAYIFSSI---------PNHVVSLNLCLNCLHGPSLENLK 246
Query: 315 AVFKKLKTLERVEMPQNGIYHVG---ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371
+ LK L+ V + + + ++ AL AF + + ++ N I +IP+
Sbjct: 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN 306
Query: 372 ALSKL-PSLAILNLGDCLLKSAGASSI-AKYLTDNTTLEDVNLTCNEI 417
+ +L + +L + L A + L L + TC +
Sbjct: 307 LIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
Score = 140 bits (355), Expect = 1e-37
Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 15/244 (6%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
+ LDLS N I L ++ ++ L L+ N LG L + L
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPA-SVTSLNLSGNSLGFKNSDELVQIL- 75
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK-TLERVEMPQNGIYHVGIT 339
P + N L + + L + T+ +++ N +
Sbjct: 76 --------AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS 127
Query: 340 ALSDAFE-ENKNLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGDCLLKSAGASSI 397
AF ++ LNL N + K + L Q L+ +P ++ LNL L S + +
Sbjct: 128 EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAEL 187
Query: 398 AKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVEEMEK 455
AK+L ++ ++L+ N + ++ +L + +N+ N +E ++
Sbjct: 188 AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247
Query: 456 LMKS 459
L S
Sbjct: 248 LKDS 251
Score = 137 bits (347), Expect = 1e-36
Identities = 50/383 (13%), Positives = 110/383 (28%), Gaps = 66/383 (17%)
Query: 76 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQF 134
L G++ + ++ + + ++L+ N + ++L++A + +N+S N
Sbjct: 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL 63
Query: 135 GEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSN 194
G + +E+ L +N++ +
Sbjct: 64 GFKNSDEL---------VQIL--------------------------AAIPANVTSLN-- 86
Query: 195 HSHNASNQSHNNSNQSHNTSNQ--SHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSS 252
+ N S+ + LDL N F +
Sbjct: 87 ----------LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136
Query: 253 CCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKM 312
++ L L N LGI L + L P + N L ++
Sbjct: 137 PA-SITSLNLRGNDLGIKSSDELIQILAAI---------PANVNSLNLRGNNLASKNCAE 186
Query: 313 LAAVFKKL-KTLERVEMPQNGIYHVGITALSDAFEENKN-LRHLNLNDNTITYKGAIPLG 370
LA + ++ +++ N + L+ F N + LNL N + L
Sbjct: 187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246
Query: 371 QALSKLPSLAILNLGDCLLKSAG---ASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 427
L L + L ++K+ ++ + + V+ EI + +
Sbjct: 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN 306
Query: 428 AMKNK-TKLKQINVSENQFGEEG 449
++ K ++
Sbjct: 307 LIRELSGKADVPSLLNQCLIFAQ 329
Score = 133 bits (337), Expect = 2e-35
Identities = 37/243 (15%), Positives = 76/243 (31%), Gaps = 16/243 (6%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
A + L+LS N + L L + + L L N +A +
Sbjct: 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPF-TITVLDLGWNDFSSKSSSEFKQAFSNL-- 136
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL-KTLERVEMPQNGIYHVGITALSD 343
P ++ N L + + L + + + + + N + L+
Sbjct: 137 -------PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAK 189
Query: 344 AFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGDCLLKSAGASSIAKYL 401
++ L+L+ N + K L S +P + LNL L ++
Sbjct: 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249
Query: 402 TDNTTLEDVNLTCN---EISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMK 458
L+ V L + +S + L A N K+ ++ + + + L++
Sbjct: 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIR 309
Query: 459 SFG 461
Sbjct: 310 ELS 312
Score = 132 bits (333), Expect = 1e-34
Identities = 47/243 (19%), Positives = 86/243 (35%), Gaps = 14/243 (5%)
Query: 222 KTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHD 281
T A + L+LS N+ G + L +L + + L L+ N L L K L
Sbjct: 48 NTPASVTSLNLSGNSLGFKNSDELVQILAAIPA-NVTSLNLSGNFLSYKSSDELVKTLAA 106
Query: 282 CYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL-KTLERVEMPQNGIYHVGITA 340
P + V G N ++ + F L ++ + + N +
Sbjct: 107 I---------PFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157
Query: 341 LSDAFE-ENKNLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGDCLLKSAGASSIA 398
L N+ LNL N + K L + L+ +P S+ L+L LL + +A
Sbjct: 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA 217
Query: 399 KYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLM 457
+ + +NL N + +L + L+ + + + E+ + L
Sbjct: 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277
Query: 458 KSF 460
+F
Sbjct: 278 AAF 280
Score = 100 bits (250), Expect = 2e-23
Identities = 40/283 (14%), Positives = 90/283 (31%), Gaps = 50/283 (17%)
Query: 2 LAAVFKKLK-TLEHVEMPQNGIYHVGITALSDAFE-ENKKLRHLNLNDNTITYKGAIPLG 59
L + T+ +++ N + AF + LNL N + K + L
Sbjct: 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159
Query: 60 QALSKLP-SLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKA 117
Q L+ +P ++ LNL L S + +AK+L ++ ++L+ N + ++ +L
Sbjct: 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219
Query: 118 MK-NKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEE 176
+ +N+ N +E ++ L S
Sbjct: 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS---------------------------- 251
Query: 177 NDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNA 236
+L ++ + N S + + +++ ++ +D +
Sbjct: 252 --------LKHLQTVYLDY-----DIVKNMSKEQCKALGAAFPNIQK---IILVDKNGKE 295
Query: 237 FGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 279
P +++L+R + L N L +
Sbjct: 296 IHPSHSIPISNLIRELSG-KADVPSLLNQCLIFAQKHQTNIED 337
Score = 99.8 bits (249), Expect = 3e-23
Identities = 33/203 (16%), Positives = 74/203 (36%), Gaps = 15/203 (7%)
Query: 262 LNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK 321
+N G + + P + N L + L F
Sbjct: 1 MNYKLTLHPGSNPVEEFTS----------IPHGVTSLDLSLNNLYSISTVELIQAFANTP 50
Query: 322 -TLERVEMPQNGIYHVGITALSDAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLP-S 378
++ + + N + L N+ LNL+ N ++YK + L + L+ +P +
Sbjct: 51 ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFT 110
Query: 379 LAILNLGDCLLKSAGASSIAKYL-TDNTTLEDVNLTCNEISVQGGLDLVKAMKN-KTKLK 436
+ +L+LG S +S + ++ +NL N++ ++ +L++ + +
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170
Query: 437 QINVSENQFGEEGVEEMEKLMKS 459
+N+ N + E+ K + S
Sbjct: 171 SLNLRGNNLASKNCAELAKFLAS 193
Score = 87.8 bits (218), Expect = 4e-19
Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 12/207 (5%)
Query: 2 LAAVFKKL-KTLEHVEMPQNGIYHVGITALSDAFEE-NKKLRHLNLNDNTITYKGAIPLG 59
L + + + + + N + L+ + L+L+ N + K L
Sbjct: 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA 217
Query: 60 QALSKLP-SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN---EISVQGGLDLV 115
S +P + LNL L ++ L+ V L + +S + L
Sbjct: 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277
Query: 116 KAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQD-EESE 174
A N K+ ++ + + + L++ + +C Q + +
Sbjct: 278 AAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSG--KADVPSLLNQCLIFAQKHQTNI 335
Query: 175 EENDSDAEGDNSNLSHN---DSNHSHN 198
E+ + E S + + +H H+
Sbjct: 336 EDLNIPDELRESIQTCKPLLEHHHHHH 362
Score = 84.0 bits (208), Expect = 8e-18
Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 4/144 (2%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENK-KLRHLNLNDNTITYKGAIPLGQ 60
+ + +++ N +Y + L AF + LNL+ N++ +K + L Q
Sbjct: 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73
Query: 61 ALSKLP-SLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAM 118
L+ +P ++ LNL L + + K L T+ ++L N+ S + + +A
Sbjct: 74 ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133
Query: 119 KN-KTKLKQINVSENQFGEEGVEE 141
N + +N+ N G + +E
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDE 157
Score = 65.9 bits (161), Expect = 7e-12
Identities = 18/106 (16%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 45 LNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTC 103
+N + G+ P+ + S + L+L L S + + + ++ +NL+
Sbjct: 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60
Query: 104 NEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVEEMEKLMKS 148
N + + +LV+ + + +N+S N + +E+ K + +
Sbjct: 61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAA 106
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 135 bits (341), Expect = 9e-36
Identities = 49/258 (18%), Positives = 96/258 (37%), Gaps = 18/258 (6%)
Query: 206 NSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 265
+ H S + + L +L+L+ P+ +A +L S AL+E+ L +
Sbjct: 53 DHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRH-ALDEVNLASC 111
Query: 266 GLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK-TLE 324
L G + L + L L N L E K L + + +
Sbjct: 112 QLDPAGLRTLLPVFLRARK--------LGL-----QLNSLGPEACKDLRDLLLHDQCQIT 158
Query: 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384
+ + N + G+ L + N ++ HL+L + +G L L + L LN+
Sbjct: 159 TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218
Query: 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGL---DLVKAMKNKTKLKQINVS 441
A ++A+ ++ +LE ++L NE+S +G DL A + ++
Sbjct: 219 AYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTE 278
Query: 442 ENQFGEEGVEEMEKLMKS 459
E + ++ ++
Sbjct: 279 GTAVSEYWSVILSEVQRN 296
Score = 109 bits (275), Expect = 1e-26
Identities = 47/279 (16%), Positives = 87/279 (31%), Gaps = 36/279 (12%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENK-KLRHLNLNDNTITYKGAIPLGQ 60
L + + + N + L D ++ ++ L L++N +T G L +
Sbjct: 118 LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME 177
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 120
L+ S+ L+L L G +A L N L+++N+ N L L +A +
Sbjct: 178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAARE 237
Query: 121 KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSD 180
L+ +++ N+ EG + + L + A +V+ EG E E
Sbjct: 238 HPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEV---- 293
Query: 181 AEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPI 240
+ S + + + L+ DL D+ +
Sbjct: 294 -----------------QRNLNSWDRARVQRHLE------------LLLRDLEDSRGATL 324
Query: 241 GVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 279
A LLR + L G
Sbjct: 325 NPWRKAQLLRVEG--EVRALLEQLGSSGSPSGSWSHPQF 361
Score = 106 bits (267), Expect = 1e-25
Identities = 36/227 (15%), Positives = 67/227 (29%), Gaps = 26/227 (11%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
++ L LS+N GV L + L + + L L + GLG G +LL+ L
Sbjct: 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTS--VTHLSLLHTGLGDEGLELLAAQLD---- 208
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
L+ N + A LA ++ +LE + + N + G L D
Sbjct: 209 ------RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262
Query: 345 FEENKNLRHL---NLNDNTITYKGAIPLGQALSKLPSLA-----------ILNLGDCLLK 390
+ + ++ ++ L + L S + +L D
Sbjct: 263 GGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGA 322
Query: 391 SAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 437
+ A+ L + + G +
Sbjct: 323 TLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHHH 369
Score = 94.4 bits (235), Expect = 2e-21
Identities = 36/201 (17%), Positives = 57/201 (28%), Gaps = 26/201 (12%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
L + L L G G+E LA L + L+EL + NG G T L++A
Sbjct: 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ--LQELNVAYNGAGDTAALALARAAR 236
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE---MPQNGIYHVG 337
+ +L++ N L +EG ++L + + RV +
Sbjct: 237 EHP----------SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYW 286
Query: 338 ITALSDAFEENK-----------NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386
LS+ L +L D+ Q L + L
Sbjct: 287 SVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQL 346
Query: 387 CLLKSAGASSIAKYLTDNTTL 407
S S
Sbjct: 347 GSSGSPSGSWSHPQFEKGAGH 367
Score = 70.1 bits (172), Expect = 2e-13
Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 2/137 (1%)
Query: 220 SLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFA-LEELKLNNNGLGITGCKLLSKA 278
+ + L L L N G + L DL ++ A + + +LS+
Sbjct: 234 AAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEV 293
Query: 279 LHDCYESSKKEG-SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG 337
+ + L L + +R A + + + +
Sbjct: 294 QRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPS 353
Query: 338 ITALSDAFEENKNLRHL 354
+ FE+ H
Sbjct: 354 GSWSHPQFEKGAGHHHH 370
Score = 67.0 bits (164), Expect = 2e-12
Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 5/119 (4%)
Query: 24 HVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL-PSLAILNLGDCLLKSAG 82
H + E LR LNL +T + L +L +NL C L AG
Sbjct: 58 HYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG 117
Query: 83 ASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVE 140
++ L L N + + DL + ++ ++ + +S N GV
Sbjct: 118 LRTLLPVFLRARKL---GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVA 173
Score = 62.8 bits (153), Expect = 6e-11
Identities = 16/139 (11%), Positives = 37/139 (26%), Gaps = 14/139 (10%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENK---KLRHLNLNDNTITYKGAIPL 58
LA ++ +LE + + N + G L D + ++ ++ ++ L
Sbjct: 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVIL 290
Query: 59 GQALSKLPSLA-----------ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 107
+ L S + +L D + A+ L + +
Sbjct: 291 SEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350
Query: 108 VQGGLDLVKAMKNKTKLKQ 126
G +
Sbjct: 351 SPSGSWSHPQFEKGAGHHH 369
Score = 44.7 bits (106), Expect = 4e-05
Identities = 12/110 (10%), Positives = 21/110 (19%), Gaps = 14/110 (12%)
Query: 1 MLAAVFKKLKTLEHVE---MPQNGIYHVGITALSDAFEENK-----------KLRHLNLN 46
+L + + V + LS+ +L +L
Sbjct: 258 VLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLE 317
Query: 47 DNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 96
D+ Q L + L S S
Sbjct: 318 DSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGH 367
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 99.5 bits (248), Expect = 2e-22
Identities = 93/473 (19%), Positives = 156/473 (32%), Gaps = 79/473 (16%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALS---------------------DAFEENKKL 40
L V + L T E + + N I V ++ +AF L
Sbjct: 16 LTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL 75
Query: 41 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVN 100
R L+L + I + + A L L L L C L A Y + L ++
Sbjct: 76 RILDLGSSKIYF---LHPD-AFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLD 129
Query: 101 LTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 160
L+ N+I L L + LK I+ S NQ E+E L L
Sbjct: 130 LSKNQIRS---LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL-------QGKTLSFF 179
Query: 161 EGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMS 220
+ + + N L D + + + + N SN + S +
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPF-RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
++ + A L RSS + L L++ + L S+
Sbjct: 239 AH---HIMGAGFGFHNIKDPDQNTFAGLARSS----VRHLDLSHGFV----FSLNSRVFE 287
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+ LKV N++ K+ F L L+ + + N + +
Sbjct: 288 TLKD----------LKVLNLAYNKIN----KIADEAFYGLDNLQVLNLSYNLLGELY--- 330
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS-AGASSIAK 399
S F + +++L N I I L L L+L D L + SI
Sbjct: 331 -SSNFYGLPKVAYIDLQKNHIAI---IQDQ-TFKFLEKLQTLDLRDNALTTIHFIPSIPD 385
Query: 400 -YLTDN--TTLEDVNLTCNEISVQG----GLDLVKAMKNKTKLKQINVSENQF 445
+L+ N TL +NLT N I + LD++ + L+ + +++N+F
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438
Score = 61.7 bits (150), Expect = 3e-10
Identities = 69/391 (17%), Positives = 117/391 (29%), Gaps = 113/391 (28%)
Query: 5 VFKKLK--TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
F L ++ H+++ ++ + S FE K L+ LNL N I I +A
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSL----NSRVFETLKDLKVLNLAYNKINK---IA-DEAF 310
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
L +L +LNL LL +S+ + ++L N I++ + K
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSN----FYGLPKVAYIDLQKNHIAIIQD----QTFKFLE 362
Query: 123 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAE 182
KL+ +++ +N L S +
Sbjct: 363 KLQTLDLRDNA-----------------------LTTIHFIPSIPDIF------------ 387
Query: 183 GDNSNLSHNDSNHSHNASNQSHNNSNQSHN--TSNQSHMSLKTGARLVELDLSDNAFGPI 240
LS N + + N + S N + L L L L+ N F
Sbjct: 388 -----LSGNKLVTLPKINL-TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441
Query: 241 GVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300
+ S LE+L L N L +E+
Sbjct: 442 SGDQTPSENPS-----LEQLFLGENML------------QLAWETELCWD---------- 474
Query: 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 360
VF+ L L+ + + N + + F LR L+LN N
Sbjct: 475 ---------------VFEGLSHLQVLYLNHNYLNSLP----PGVFSHLTALRGLSLNSNR 515
Query: 361 ITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
+T + +L IL++ L +
Sbjct: 516 LTV---LSHN---DLPANLEILDISRNQLLA 540
Score = 47.5 bits (113), Expect = 7e-06
Identities = 27/145 (18%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375
F+ L L +++ + IY + DAF+ +L L L ++
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLH----PDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRN 121
Query: 376 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 435
L +L L+L ++S + +L+ ++ + N+I + +L + ++ KT L
Sbjct: 122 LKALTRLDLSKNQIRSL---YLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKT-L 176
Query: 436 KQINVSENQFGEEGVEEMEKLMKSF 460
+++ N + K M F
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPF 201
Score = 44.4 bits (105), Expect = 8e-05
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 18/132 (13%)
Query: 4 AVFKKLKTLEHVEMPQNGIYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
+ +LE + + +N + T L D FE L+ L LN N + +P G
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS---LPPG-VF 500
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
S L +L L+L L + + LE ++++ N++
Sbjct: 501 SHLTALRGLSLNSNRLTVLSHNDLP------ANLEILDISRNQLLAPNPDVF-------V 547
Query: 123 KLKQINVSENQF 134
L ++++ N+F
Sbjct: 548 SLSVLDITHNKF 559
Score = 35.9 bits (83), Expect = 0.033
Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 11/112 (9%)
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L+ + L L+ N I + + L L +L LG
Sbjct: 16 LTQVPQVLNTTERLLLSFNYIRT---VTAS-SFPFLEQLQLLELGSQYTPLTIDKEA--- 68
Query: 401 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE 452
+ L ++L ++I L A + L ++ + + +++
Sbjct: 69 FRNLPNLRILDLGSSKIYF---LH-PDAFQGLFHLFELRLYFCGLSDAVLKD 116
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 88.5 bits (220), Expect = 9e-21
Identities = 23/148 (15%), Positives = 54/148 (36%), Gaps = 3/148 (2%)
Query: 306 ENEGAKMLAAVFKKLKTLERVEMPQ-NGIYHVGITALSDAFEENKNLRHLNLNDNTITYK 364
+ + L + LE V + I + A ++A + N ++ ++
Sbjct: 21 STDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP 80
Query: 365 GAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT--CNEISVQGG 422
A L + L +L LN+ + +G ++ + L NT+L ++ + +
Sbjct: 81 VAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140
Query: 423 LDLVKAMKNKTKLKQINVSENQFGEEGV 450
+++ ++ T L + Q G
Sbjct: 141 MEIANMLEKNTTLLKFGYHFTQQGPRLR 168
Score = 87.0 bits (216), Expect = 4e-20
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 3/143 (2%)
Query: 297 VFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNL 356
V + + K A K +++ + AL++ + N L+ LN+
Sbjct: 41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV 100
Query: 357 NDNTITYKGAIPLGQALSKLPSLAILNLGDC--LLKSAGASSIAKYLTDNTTLEDVNLTC 414
N I+ G + L +AL SL L + + L + IA L NTTL
Sbjct: 101 ESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160
Query: 415 NEISVQGGLDLVKAMKNKTKLKQ 437
+ + M N +++
Sbjct: 161 TQQGPRLRASNA-MMNNNDLVRK 182
Score = 87.0 bits (216), Expect = 4e-20
Identities = 23/141 (16%), Positives = 52/141 (36%), Gaps = 3/141 (2%)
Query: 2 LAAVFKKLKTLEHVEMPQ-NGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQ 60
L + LE V + I + A ++A + N ++ ++ A L +
Sbjct: 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE 87
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT--CNEISVQGGLDLVKAM 118
L +L LN+ + +G ++ + L NT+L ++ + + +++ +
Sbjct: 88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML 147
Query: 119 KNKTKLKQINVSENQFGEEGV 139
+ T L + Q G
Sbjct: 148 EKNTTLLKFGYHFTQQGPRLR 168
Score = 80.8 bits (200), Expect = 5e-18
Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 19/190 (10%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLSKAL 279
+K D N+ E L + + LEE+ LNN + + K ++AL
Sbjct: 6 IKPTKYKPVPDEEPNS--TDVEETLKRIQNNDP--DLEEVNLNNIMNIPVPTLKACAEAL 61
Query: 280 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 339
+++ +K F R + A LA + K TL+ + + N I GI
Sbjct: 62 ----KTNTY------VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111
Query: 340 ALSDAFEENKNLRHLNL--NDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 397
AL +A + N +L L + + + + L K +L
Sbjct: 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ--GPRLRA 169
Query: 398 AKYLTDNTTL 407
+ + +N L
Sbjct: 170 SNAMMNNNDL 179
Score = 78.9 bits (195), Expect = 2e-17
Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 3/127 (2%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
A K ++ + AL++ + N L+ LN+ N I+ G + L +A
Sbjct: 57 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116
Query: 62 LSKLPSLAILNLGDC--LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 119
L SL L + + L + IA L NTTL + + M
Sbjct: 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLRASNA-MMN 175
Query: 120 NKTKLKQ 126
N +++
Sbjct: 176 NNDLVRK 182
Score = 77.3 bits (191), Expect = 9e-17
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Query: 29 ALSDAFEENKKLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87
L + L +NLN+ I +AL + ++ A ++A
Sbjct: 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA 86
Query: 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN--QFGEEGVEEMEKL 145
+ L N TL+ +N+ N IS G L LV+A+++ T L ++ + G E+ +
Sbjct: 87 EMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM 146
Query: 146 MKS 148
++
Sbjct: 147 LEK 149
Score = 58.9 bits (143), Expect = 2e-10
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 369 LGQALSKLPSLAILNLGD-CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 427
L + + P L +NL + + + A+ L NT ++ ++ + L +
Sbjct: 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE 87
Query: 428 AMKNKTKLKQINVSENQFGEEGVEEM 453
+K LK +NV N G+ +
Sbjct: 88 MLKVNNTLKSLNVESNFISGSGILAL 113
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 85.5 bits (212), Expect = 6e-18
Identities = 63/451 (13%), Positives = 132/451 (29%), Gaps = 73/451 (16%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F L +L+ + + + + + K L+ LN+ N I + L + S
Sbjct: 95 AFSGLSSLQKLVAVETNLASL----ENFPIGHLKTLKELNVAHNLIQ---SFKLPEYFSN 147
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTK 123
L +L L+L ++S + + ++L+ N + +Q G + +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF------KEIR 201
Query: 124 LKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEG 183
L ++ + N ++ + +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGL-----------------------EVHRLVLGEFR 238
Query: 184 DNSNLSHNDSNHSHNASN--QSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIG 241
+ NL D + N + + L
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV------ 292
Query: 242 VEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYESSKKEGSPLA------ 294
+ + S F + L+L N KL S L +S K G+ +
Sbjct: 293 --TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS--LKRLTFTSNKGGNAFSEVDLPS 348
Query: 295 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHL 354
L+ RN L +G + +L+ +++ NG+ +S F + L HL
Sbjct: 349 LEFLDLSRNGLSFKGCC--SQSDFGTTSLKYLDLSFNGV-----ITMSSNFLGLEQLEHL 401
Query: 355 NLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC 414
+ + + + L +L L++ + A ++LE + +
Sbjct: 402 DFQHSNLKQ---MSEFSVFLSLRNLIYLDISHTHTRVAFNGI----FNGLSSLEVLKMAG 454
Query: 415 NEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
N L L +++S+ Q
Sbjct: 455 NSFQ---ENFLPDIFTELRNLTFLDLSQCQL 482
Score = 84.0 bits (208), Expect = 2e-17
Identities = 71/456 (15%), Positives = 145/456 (31%), Gaps = 52/456 (11%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
+ F L+ +++ + I + A++ L L L N I + LG A
Sbjct: 45 SYSFFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQS---LALG-AF 96
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
S L SL L + L S + TL+++N+ N I L + N T
Sbjct: 97 SGLSSLQKLVAVETNLA----SLENFPIGHLKTLKELNVAHNLIQS---FKLPEYFSNLT 149
Query: 123 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEE--QDEESEEENDSD 180
L+ +++S N+ ++ L + + +L L + ++ +
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR- 208
Query: 181 AEGDNSNLSHNDSNHSHNASN--QSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFG 238
+N + + + + N N L L + +
Sbjct: 209 ---NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265
Query: 239 PIGVEGLADLLRSSCCFALEELKLNNNGL-----GITGCKLLSKALHDCYESSKKEGSPL 293
+ + +C + L + + L +C
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325
Query: 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRH 353
+LK N+ N + L +LE +++ +NG+ G S + +L++
Sbjct: 326 SLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCC--SQSDFGTTSLKY 377
Query: 354 LNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT 413
L+L+ N + + L L L+ LK S+ L + L +++
Sbjct: 378 LDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL---DIS 429
Query: 414 CNEISV--QGGLDLVKAMKNKTKLKQINVSENQFGE 447
V G + + L+ + ++ N F E
Sbjct: 430 HTHTRVAFNGIFN------GLSSLEVLKMAGNSFQE 459
Score = 57.0 bits (138), Expect = 8e-09
Identities = 71/447 (15%), Positives = 138/447 (30%), Gaps = 84/447 (18%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
L F L LEH+++ N I + T L + L+L+ N + + I G A
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF---IQPG-A 196
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK 121
++ L L L + + + L L E +G L+ +
Sbjct: 197 FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVH---RLVLGEFRNEGNLEKFDKSALE 252
Query: 122 TKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDA 181
L + + E + + ++ F +
Sbjct: 253 -GLCNLTIEEFRLAYLDYYL-DDIIDLFNCLTNV-------------------------- 284
Query: 182 EGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIG 241
+ +L + S + N +LK L L + N
Sbjct: 285 --SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK-SLKRLTFTSNK----- 336
Query: 242 VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 301
+ +LE L L+ NGL GC S + +LK
Sbjct: 337 ---GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS------------DFGTTSLKYLDLS 381
Query: 302 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD--AFEENKNLRHLNLNDN 359
N + +++ F L+ LE ++ + + +S+ F +NL +L+++
Sbjct: 382 FNGVIT-----MSSNFLGLEQLEHLDFQHS-----NLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-S 418
G + L SL +L + + I L L ++L+ ++
Sbjct: 432 HTR---VAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTEL---RNLTFLDLSQCQLEQ 484
Query: 419 VQGGLDLVKAMKNKTKLKQINVSENQF 445
+ A + + L+ +N++ NQ
Sbjct: 485 LSPT-----AFNSLSSLQVLNMASNQL 506
Score = 52.4 bits (126), Expect = 2e-07
Identities = 84/419 (20%), Positives = 132/419 (31%), Gaps = 61/419 (14%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLG--QAL 62
LKTL+ + + N I L + F L HL+L+ N I I + L
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQS---IYCTDLRVL 172
Query: 63 SKLPSLAI-LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK 121
++P L + L+L + I L + L N S+ ++ +
Sbjct: 173 HQMPLLNLSLDLSLNPMNF-----IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG- 226
Query: 122 TKLKQINVSENQFGEEGVEEMEKLMKS-FGMAAALVLEDDEGECSDEEQDEESEEENDSD 180
L+ + +F EG +EK KS L +E+ D D+ + N
Sbjct: 227 --LEVHRLVLGEFRNEG--NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CL 281
Query: 181 AEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPI 240
+ +L + S + N +LK L L + N G
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK-SLKRLTFTSNKGGNA 340
Query: 241 GVE--------------GLADLLRSSCCFA----LEELKLNNNGL-----GITGCKLLSK 277
E GL+ S L+ L L+ NG+ G + L
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400
Query: 278 -ALHDCYESSKKEGSPLA----LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 332
E S L +F L +LE ++M N
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV----AFNGIFNGLSSLEVLKMAGNS 456
Query: 333 IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
L D F E +NL L+L+ + + A + L SL +LN+ LKS
Sbjct: 457 FQE---NFLPDIFTELRNLTFLDLSQCQLEQ---LSPT-AFNSLSSLQVLNMASNQLKS 508
Score = 46.2 bits (110), Expect = 1e-05
Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 17/131 (12%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
VF L+ L ++++ + F L L + N+ L ++
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQ---ENFLPDIFTE 468
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTK 123
L +L L+L C L+ ++ ++L+ +N+ N++ SV G T
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMASNQLKSVPDG-----IFDRLTS 519
Query: 124 LKQINVSENQF 134
L++I + N +
Sbjct: 520 LQKIWLHTNPW 530
Score = 37.8 bits (88), Expect = 0.007
Identities = 52/376 (13%), Positives = 100/376 (26%), Gaps = 118/376 (31%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
+ L L E + + + + D F + +L TI +
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYY-LDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFG 305
Query: 65 LPSLAILNLGDCLLKSAGASSIAK-YLTDN-----------TTLEDVNLTCNEISVQGGL 112
L ++N + S+ + T N +LE ++L+ N +S +G
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365
Query: 113 DLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL-VLEDDEGECSDEEQDE 171
+ T LK +++S N + + +F L L
Sbjct: 366 SQ--SDFGTTSLKYLDLSFNG--------VITMSSNFLGLEQLEHL-------------- 401
Query: 172 ESEEENDSDAEGDNSNLSHN--DSNHSHNASNQSHN------NSNQSHNTSNQSHMSLKT 223
+ H+ + N + + N L
Sbjct: 402 ---------------DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS- 445
Query: 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCY 283
L L ++ N+F + + LR+ L L L+ L
Sbjct: 446 --SLEVLKMAGNSFQENFLPDIFTELRN-----LTFLDLSQCQL---------------- 482
Query: 284 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
+L F L +L+ + M N + V
Sbjct: 483 -------------------EQLSPT-------AFNSLSSLQVLNMASNQLKSVP----DG 512
Query: 344 AFEENKNLRHLNLNDN 359
F+ +L+ + L+ N
Sbjct: 513 IFDRLTSLQKIWLHTN 528
Score = 32.0 bits (73), Expect = 0.46
Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 30/117 (25%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK-------YLT 402
+ ++L+L+ N + + + P L +L+L C +++ + LT
Sbjct: 29 STKNLDLSFNPLR---HLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 403 DN-------------TTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 445
N ++L+ + + S++ + + LK++NV+ N
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-----PIGHLKTLKELNVAHNLI 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 83.8 bits (207), Expect = 2e-17
Identities = 72/469 (15%), Positives = 148/469 (31%), Gaps = 44/469 (9%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLND-NTITYKGAIPLGQ 60
+ + L+ L+ V + + + + L+ A L L L+ + T G L
Sbjct: 104 VTEISNNLRQLKSVHFRRMIVSDLDLDRLAKAR--ADDLETLKLDKCSGFTTDG---LLS 158
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 120
++ + L + + + + NT+LE +N E + DL +N
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218
Query: 121 KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSD 180
L + V + + E + F AAA + E G +++ E
Sbjct: 219 CRSLVSVKVGDFEILE---------LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269
Query: 181 AEGDNSNLSHNDSNHSHNASNQSHN----NSNQSHNTSNQSHMSLKTGARLVELDLSDNA 236
+ LS+ N + + + + ++ L L+ +
Sbjct: 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV- 328
Query: 237 FGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALK 296
IG GL L + C L+ L++ G G + + + +G L+
Sbjct: 329 ---IGDRGLEVL--AQYCKQLKRLRI-ERGADEQGMEDEEGLVSQRGLIALAQGCQ-ELE 381
Query: 297 VFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEEN----KNLR 352
+ + NE + + K L V + + + L + K LR
Sbjct: 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLL--DREERITDLPLDNGVRSLLIGCKKLR 439
Query: 353 HLNLNDN--TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV 410
+T G +GQ P++ + LG G ++ + L+ +
Sbjct: 440 RFAFYLRQGGLTDLGLSYIGQ---YSPNVRWMLLGYVGESDEGLMEFSRGCPN---LQKL 493
Query: 411 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
+ S + V + + L+ + V + G + M+
Sbjct: 494 EMRGCCFSERAIAAAVTKLPS---LRYLWVQGYRASMTGQDLMQMARPY 539
Score = 63.8 bits (155), Expect = 5e-11
Identities = 65/455 (14%), Positives = 139/455 (30%), Gaps = 67/455 (14%)
Query: 43 LNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT 102
NL + + + L L ++ ++ +AK D+ LE + L
Sbjct: 89 FNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADD--LETLKLD 146
Query: 103 -CNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLE--- 158
C+ + G L+ + + K+K + + E+ F E+ + + +L + L
Sbjct: 147 KCSGFTTDG---LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE 203
Query: 159 ----DDEG------ECSDEEQDEESEEENDSDA-------------EGDNSNLSHNDSNH 195
+ C + + E G + +
Sbjct: 204 FAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKY 263
Query: 196 SHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCF 255
+ + S+ N+ + A++ +LDL + E L++ C
Sbjct: 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA---LLETEDHCTLIQK--CP 318
Query: 256 ALEELKLNN----NGLG--ITGCKLLSK-ALHDCYESSKKEGSPLALKVFIAGRNRLENE 308
LE L+ N GL CK L + + + E +
Sbjct: 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE----------GLVSQR 368
Query: 309 GAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN--DNTITYKGA 366
G L A+ + + LE + + + I + + ++ + + R + L+ +
Sbjct: 369 G---LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425
Query: 367 IPLGQALSKLPSLAILNLGDC--LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLD 424
+ L L L G S I +Y + + L S +G ++
Sbjct: 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS---PNVRWMLLGYVGESDEGLME 482
Query: 425 LVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
+ N L+++ + F E + + S
Sbjct: 483 FSRGCPN---LQKLEMRGCCFSERAIAAAVTKLPS 514
Score = 38.4 bits (89), Expect = 0.005
Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 24/164 (14%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGIT--GCKLLSKALHDCY 283
RLV LD + G+ LL C L G+T G + +
Sbjct: 409 RLVLLDREERITDLPLDNGVRSLLIG--CKKLRRFAFYLRQGGLTDLGLSYIGQYSP--- 463
Query: 284 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
++ + G +EG L + L+++EM I A
Sbjct: 464 ----------NVRWMLLGYVGESDEG---LMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC 387
+LR+L + + G + A ++ ++
Sbjct: 511 KL---PSLRYLWVQGYRASMTGQDLMQMARP-YWNIELIPSRRV 550
Score = 32.2 bits (73), Expect = 0.39
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 4/75 (5%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
L + L+ +EM I A LR+L + + G + A
Sbjct: 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL---PSLRYLWVQGYRASMTGQDLMQMA 536
Query: 62 LSKLPSLAILNLGDC 76
++ ++
Sbjct: 537 RP-YWNIELIPSRRV 550
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 78.3 bits (193), Expect = 5e-17
Identities = 21/145 (14%), Positives = 53/145 (36%), Gaps = 4/145 (2%)
Query: 303 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT 362
R+ E + L K +E+ + I L + E + +LR LN+ N +T
Sbjct: 52 KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111
Query: 363 YKGAIPLGQALSK---LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419
+ L ++ + N +L + + + +N +L V ++ +
Sbjct: 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQ 444
+ + +N +++ + ++
Sbjct: 172 RHRVSE-ALERNYERVRLRRLGKDP 195
Score = 70.6 bits (173), Expect = 3e-14
Identities = 22/138 (15%), Positives = 55/138 (39%), Gaps = 4/138 (2%)
Query: 2 LAAVFKKLKTLEHVEMPQ-NGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQ 60
+ + + L+ V + + I +L +A +K + +L + I+ A L +
Sbjct: 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV---NLTCNEISVQGGLDLVKA 117
+ PSL +LN+ L + + + ++ + N + + Q +D++ A
Sbjct: 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA 152
Query: 118 MKNKTKLKQINVSENQFG 135
++ L ++ +S
Sbjct: 153 IEENESLLRVGISFASME 170
Score = 70.6 bits (173), Expect = 3e-14
Identities = 22/141 (15%), Positives = 56/141 (39%), Gaps = 4/141 (2%)
Query: 310 AKMLAAVFKKLKTLERVEMPQ-NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIP 368
+ + + L+ V + + I +L +A +K++ +L + I+ A
Sbjct: 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG 89
Query: 369 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV---NLTCNEISVQGGLDL 425
L + + PSL +LN+ L + + + ++ + N + + Q +D+
Sbjct: 90 LIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149
Query: 426 VKAMKNKTKLKQINVSENQFG 446
+ A++ L ++ +S
Sbjct: 150 MMAIEENESLLRVGISFASME 170
Score = 70.3 bits (172), Expect = 3e-14
Identities = 16/123 (13%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 29 ALSDAFEENKKLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87
++ E++ L+ +N+N+ ++ + L +A + +L + + + A +
Sbjct: 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI 91
Query: 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKT--KLKQINVSENQFGEEGVEEMEK 144
+ + + +L +N+ N ++ + L+++ ++ + K N ++ G + +M
Sbjct: 92 ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM 151
Query: 145 LMK 147
++
Sbjct: 152 AIE 154
Score = 69.9 bits (171), Expect = 4e-14
Identities = 16/123 (13%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 340 ALSDAFEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 398
++ E++ +L+ +N+N+ ++ + L +A + +L + + + A +
Sbjct: 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI 91
Query: 399 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKT--KLKQINVSENQFGEEGVEEMEK 455
+ + + +L +N+ N ++ + L+++ ++ + K N ++ G + +M
Sbjct: 92 ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM 151
Query: 456 LMK 458
++
Sbjct: 152 AIE 154
Score = 52.2 bits (125), Expect = 4e-08
Identities = 13/92 (14%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 58 LGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 116
+ + L +N+ + + S+ + ++ +E +L IS L++
Sbjct: 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92
Query: 117 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 148
++ L+ +NV N E + + +
Sbjct: 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLV 124
Score = 52.2 bits (125), Expect = 4e-08
Identities = 13/92 (14%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 369 LGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 427
+ + L +N+ + + S+ + ++ +E +L IS L++
Sbjct: 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92
Query: 428 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
++ L+ +NV N E + + +
Sbjct: 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLV 124
Score = 50.2 bits (120), Expect = 2e-07
Identities = 16/124 (12%), Positives = 30/124 (24%), Gaps = 29/124 (23%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
L K +E + I L + E + LR LN+ N +T + L ++
Sbjct: 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121
Query: 62 LSK---LPSLAILNLGDCLLKSAGASSIAKYL--------------------------TD 92
+ N +L + + +
Sbjct: 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARHRVSEALER 181
Query: 93 NTTL 96
N
Sbjct: 182 NYER 185
Score = 44.5 bits (105), Expect = 2e-05
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 11/134 (8%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
+ + L++ A GL +L+ +S L L + +N L L ++
Sbjct: 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPS--LRVLNVESNFLTPELLARLLRST- 122
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
S + K ++ L N+ + ++ ++L RV + +
Sbjct: 123 ------LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME--ARHR 174
Query: 341 LSDAFEENKNLRHL 354
+S+A E N L
Sbjct: 175 VSEALERNYERVRL 188
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 78.9 bits (195), Expect = 7e-16
Identities = 64/461 (13%), Positives = 147/461 (31%), Gaps = 70/461 (15%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F L +LE++ + + + S + L+ LN+ N I L S
Sbjct: 99 SFSGLTSLENLVAVETKLASL----ESFPIGQLITLKKLNVAHNFIHS---CKLPAYFSN 151
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 124
L +L ++L +++ + + + ++++ N I KL
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-----QGIKL 206
Query: 125 KQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGD 184
++ + N +MK+ A + +++ E
Sbjct: 207 HELTLRGNFNSSN-------IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259
Query: 185 NSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQ-SHMSLKT------GARLVELDLSDNAF 237
+ + ++++ S+ ++ ++ + +S+K + L +
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL 319
Query: 238 GPIGVEGLADL-------------LRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
L L + +L L L+ N L +GC
Sbjct: 320 KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGC------------ 367
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
S + +L+ N +++A F L+ L+ ++ + + +T S A
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAI-----IMSANFMGLEELQHLDFQHSTL--KRVTEFS-A 419
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404
F + L +L+++ G L SL L + K S++ +
Sbjct: 420 FLSLEKLLYLDISYTNTKI---DFDG-IFLGLTSLNTLKMAGNSFKDNTLSNV---FANT 472
Query: 405 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
T L ++L+ ++ + +L+ +N+S N
Sbjct: 473 TNLTFLDLSKCQLE---QIS-WGVFDTLHRLQLLNMSHNNL 509
Score = 75.5 bits (186), Expect = 1e-14
Identities = 68/448 (15%), Positives = 137/448 (30%), Gaps = 46/448 (10%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+ L L ++ + N I +F L +L + + + + +L
Sbjct: 76 WHGLHHLSNLILTGNPIQSF----SPGSFSGLTSLENLVAVETKLAS---LE-SFPIGQL 127
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L LN+ + S + Y ++ T L V+L+ N I DL +N
Sbjct: 128 ITLKKLNVAHNFIHSC---KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184
Query: 126 QINVSENQFG--EEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEG 183
+++S N ++ + KL + + +
Sbjct: 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK-- 242
Query: 184 DNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTG-ARLVELDLSDNAFGPIGV 242
D NL + + + + + ++ + A + + L+ +
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS------ 296
Query: 243 EGLADLLRSSCCFALEELKLNNNGL-GITGCKLLS-KALHDCY---ESSKKEGSPLALKV 297
+ L F + L + L L K+L S K+ + +L
Sbjct: 297 --IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSY 354
Query: 298 FIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN 357
RN L G + +L +++ N G +S F + L+HL+
Sbjct: 355 LDLSRNALSFSGCCSYS--DLGTNSLRHLDLSFN-----GAIIMSANFMGLEELQHLDFQ 407
Query: 358 DNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI 417
+T+ + A L L L++ K T+L + + N
Sbjct: 408 HSTLK---RVTEFSAFLSLEKLLYLDISYTNTK----IDFDGIFLGLTSLNTLKMAGNSF 460
Query: 418 SVQGGLDLVKAMKNKTKLKQINVSENQF 445
L N T L +++S+ Q
Sbjct: 461 K---DNTLSNVFANTTNLTFLDLSKCQL 485
Score = 59.7 bits (145), Expect = 1e-09
Identities = 72/476 (15%), Positives = 123/476 (25%), Gaps = 119/476 (25%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
L A F L L HV++ N I + + L E + L+++ N I + I
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF---IQDQ-- 199
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE--------DVNLTCNEISVQGGLD 113
+ L L L S + + L + NL E S+ GL
Sbjct: 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259
Query: 114 LVK-----------------AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALV 156
V + ++++ + L
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--------KYLEDVPKHFKWQS 311
Query: 157 LEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQ-------SHNNSNQ 209
L ++ + N +
Sbjct: 312 L-----------------------------SIIRCQLKQFPTLDLPFLKSLTLTMNKGSI 342
Query: 210 SHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGI 269
S L LDLS NA G +DL +S L L L+ NG I
Sbjct: 343 SFKKVALP--------SLSYLDLSRNALSFSGCCSYSDLGTNS----LRHLDLSFNGAII 390
Query: 270 TGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP 329
+S L+ + L+ + F L+ L +++
Sbjct: 391 -----MSANFMGL----------EELQHLDFQHSTLKRVTE---FSAFLSLEKLLYLDIS 432
Query: 330 QNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 389
F +L L + N+ L + +L L+L C L
Sbjct: 433 YTNTKID----FDGIFLGLTSLNTLKMAGNSFKD---NTLSNVFANTTNLTFLDLSKCQL 485
Query: 390 KSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ L+ +N++ N + LD L ++ S N+
Sbjct: 486 EQISWGV----FDTLHRLQLLNMSHNNLL---FLD-SSHYNQLYSLSTLDCSFNRI 533
Score = 54.7 bits (132), Expect = 4e-08
Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 36/219 (16%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 286
+DLS N + ++ L+ L L+ + + KA H +
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSE------LQWLDLSRCEIE----TIEDKAWHGLHH-- 81
Query: 287 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 346
L I N +++ F L +LE + + + + S
Sbjct: 82 --------LSNLILTGNPIQS----FSPGSFSGLTSLENLVAVETKLASL----ESFPIG 125
Query: 347 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 406
+ L+ LN+ N I L S L +L ++L +++ + + +
Sbjct: 126 QLITLKKLNVAHNFIHS---CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182
Query: 407 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
++++ N I KL ++ + N
Sbjct: 183 NLSLDMSLNPIDFIQDQAF-----QGIKLHELTLRGNFN 216
Score = 49.6 bits (119), Expect = 1e-06
Identities = 60/419 (14%), Positives = 123/419 (29%), Gaps = 80/419 (19%)
Query: 27 ITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 86
I + D + KL L L N + + + L L L + L K I
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNS---SNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249
Query: 87 AKYLT----DNTTLEDVNLTCNEISVQGG-----------LDL-------VKAMKNKTKL 124
+ + T+++ LT + L ++ + K
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKW 309
Query: 125 KQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGD 184
+ +++ Q + ++ L L L ++G S ++ S
Sbjct: 310 QSLSIIRCQLKQFPTLDLPFLKS-------LTLTMNKGSISFKKVALPSLSY-------- 354
Query: 185 NSNLSHNDSNHSHNASNQSHNNS-----NQSHNTSNQSHMSLKTGARLVELDLSDNAFGP 239
+LS N + S S + + S N + + L LD +
Sbjct: 355 -LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR 413
Query: 240 IGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299
+ L L L ++ I +L
Sbjct: 414 VTEFSAFLSLEK-----LLYLDISYTNTKI----DFDGIFLGLT----------SLNTLK 454
Query: 300 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
N ++ L+ VF L +++ + + + F+ L+ LN++ N
Sbjct: 455 MAGNSFKDNT---LSNVFANTTNLTFLDLSKCQLEQIS----WGVFDTLHRLQLLNMSHN 507
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 418
+ + + ++L SL+ L+ ++ +S +L NLT N ++
Sbjct: 508 NLLF---LDSS-HYNQLYSLSTLDCSFNRIE----TSKGILQHFPKSLAFFNLTNNSVA 558
Score = 38.1 bits (89), Expect = 0.005
Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
L+ VF L +++ + + + F+ +L+ LN++ N + + +
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQIS----WGVFDTLHRLQLLNMSHNNLLF---LDSS-H 516
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 107
++L SL+ L+ ++ +S +L NLT N ++
Sbjct: 517 YNQLYSLSTLDCSFNRIE----TSKGILQHFPKSLAFFNLTNNSVA 558
Score = 34.6 bits (80), Expect = 0.069
Identities = 61/450 (13%), Positives = 125/450 (27%), Gaps = 116/450 (25%)
Query: 40 LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK-------YLTD 92
++++L+ N + + + S L L+L C +++ + LT
Sbjct: 34 TKNIDLSFNPLK---ILKSY-SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89
Query: 93 N-------------TTLEDVNLTCNEIS-VQGGLDLVKAMKNKTKLKQINVSENQFGEEG 138
N T+LE++ +++ ++ + LK++NV+ N
Sbjct: 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESF-----PIGQLITLKKLNVAHNFIHS-- 142
Query: 139 VEEMEKLMKSFGMAAAL-VLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHN-----D 192
KL F L + +LS+N
Sbjct: 143 ----CKLPAYFSNLTNLVHV-----------------------------DLSYNYIQTIT 169
Query: 193 SNHSHNASNQSHNNS--NQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLR 250
N N + S N + G +L EL L N ++ L
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA 229
Query: 251 SSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGA 310
L +L + L S + + + F ++
Sbjct: 230 G-----LHVHRLILGEF------KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278
Query: 311 KMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 370
+ + + V I L D + + L++ + + L
Sbjct: 279 VKFHC-LANVSAMS--------LAGVSIKYLEDVPKHF-KWQSLSIIRCQLKQFPTLDLP 328
Query: 371 Q---------------ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 415
LPSL+ L+L L +G S + T++ L ++L+ N
Sbjct: 329 FLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS--LRHLDLSFN 386
Query: 416 EISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ +L+ ++ +
Sbjct: 387 GAIIMSA-----NFMGLEELQHLDFQHSTL 411
Score = 30.8 bits (70), Expect = 1.0
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 409
+ ++++L+ N + + + S L L+L C +++ + L +
Sbjct: 33 STKNIDLSFNPLK---ILKSY-SFSNFSELQWLDLSRCEIETIEDKAWH----GLHHLSN 84
Query: 410 VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ LT N I + T L+ + E +
Sbjct: 85 LILTGNPIQ---SFSP-GSFSGLTSLENLVAVETKL 116
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 78.5 bits (194), Expect = 1e-15
Identities = 72/475 (15%), Positives = 141/475 (29%), Gaps = 75/475 (15%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
F L+ +++ + I + A++ L L L N I + LG A S L
Sbjct: 48 FFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQS---LALG-AFSGL 99
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
SL L + L S + TL+++N+ N I L + N T L+
Sbjct: 100 SSLQKLVAVETNLA----SLENFPIGHLKTLKELNVAHNLIQ---SFKLPEYFSNLTNLE 152
Query: 126 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLED-------------------DEGECSD 166
+++S N+ ++ L + + +L L D
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212
Query: 167 EEQDEESEEENDSDAE----GDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLK 222
++ + + E + + ++ + N L
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272
Query: 223 TGA-------RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKL 274
+ L + + S F + L+L N KL
Sbjct: 273 DIIDLFNCLTNVSSFSLVSV--------TIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324
Query: 275 LS-KALHDCYESSKKEGSPL---ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ 330
S K L S + +L+ RN L +G + +L+ +++
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG--CCSQSDFGTTSLKYLDLSF 382
Query: 331 NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLK 390
N G+ +S F + L HL+ + + L +L L++ +
Sbjct: 383 N-----GVITMSSNFLGLEQLEHLDFQHSNLK--QMSEFS-VFLSLRNLIYLDISHTHTR 434
Query: 391 SAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ ++LE + + N L L +++S+ Q
Sbjct: 435 ----VAFNGIFNGLSSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQL 482
Score = 65.8 bits (161), Expect = 1e-11
Identities = 64/463 (13%), Positives = 144/463 (31%), Gaps = 62/463 (13%)
Query: 11 TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 70
+ +++++ N + H+ S +F +L+ L+L+ I A L L+
Sbjct: 29 STKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQ--TIED--GAYQSLSHLST 80
Query: 71 LNLGDCLLKSAGASSIAK-------YLTDN-------------TTLEDVNLTCNEISVQG 110
L L ++S + + + TL+++N+ N I
Sbjct: 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ--- 137
Query: 111 GLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQD 170
L + N T L+ +++S N+ ++ L + + +L L +
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197
Query: 171 EESE-EENDSDAEGDNSNLSHNDSNHSHNASN--QSHNNSNQSHNTSNQSHMSLKTGARL 227
+E + +N + + + + N N L
Sbjct: 198 KEIRLHKLT---LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Query: 228 VELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG----ITGCKLLSK-ALHDC 282
L + + + + +C + L + + + L +C
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314
Query: 283 YESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 342
+LK N+ N + L +LE +++ +NG+ G S
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCC--S 366
Query: 343 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 402
+ +L++L+L+ N + + L L L+ LK S+
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-----TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV---FL 418
Query: 403 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
L ++++ V + L+ + ++ N F
Sbjct: 419 SLRNLIYLDISHTHTRV----AFNGIFNGLSSLEVLKMAGNSF 457
Score = 55.0 bits (133), Expect = 3e-08
Identities = 73/446 (16%), Positives = 135/446 (30%), Gaps = 58/446 (13%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
L F L LEH+++ N I + T L + L+L+ N + + I G
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF---IQPG-- 195
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK 121
K L L L + + + LE L E +G L+
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTC---IQGLAGLEVHRLVLGEFRNEGNLEKF-DKSAL 251
Query: 122 TKLKQINVSENQF--GEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDS 179
L + + E + + ++++ L ++ L E + + +
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE- 310
Query: 180 DAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGP 239
L + +S + N + S L LDLS N
Sbjct: 311 --------LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSF 361
Query: 240 IGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299
G +D +L+ L L+ NG+ S L+
Sbjct: 362 KGCCSQSD----FGTTSLKYLDLSFNGV---------------ITMSSNFLGLEQLEHLD 402
Query: 300 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
+ L+ +VF L+ L +++ + F +L L + N
Sbjct: 403 FQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGN 455
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419
+ ++L +L L+L C L+ ++L+ +N++ N
Sbjct: 456 SFQ--ENFLPD-IFTELRNLTFLDLSQCQLE----QLSPTAFNSLSSLQVLNMSHNNFF- 507
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQF 445
LD K L+ ++ S N
Sbjct: 508 --SLD-TFPYKCLNSLQVLDYSLNHI 530
Score = 49.3 bits (118), Expect = 2e-06
Identities = 52/395 (13%), Positives = 116/395 (29%), Gaps = 50/395 (12%)
Query: 37 NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG--ASSIAKYLTDNT 94
+L L L +N + + + L L + L ++ G L
Sbjct: 199 EIRLHKLTLRNNFDS--LNVM-KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255
Query: 95 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA- 153
L + D++ T + ++ + +
Sbjct: 256 NLTIEEFRLAYLDYYLD-DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314
Query: 154 ALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNL-----SHNDSNHSHNASNQSHNNSN 208
S + S + ++ +E D +L S N + S ++
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 209 Q-----SHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLN 263
S N + +L LD + + + LR+ L L ++
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-----LIYLDIS 429
Query: 264 NNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL 323
+ + + + +L+V N + L +F +L+ L
Sbjct: 430 HTHTRV----AFNGIFNGLS----------SLEVLKMAGNSFQEN---FLPDIFTELRNL 472
Query: 324 ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383
+++ Q + + AF +L+ LN++ N L SL +L+
Sbjct: 473 TFLDLSQCQLEQL----SPTAFNSLSSLQVLNMSHNNFF--SLDT--FPYKCLNSLQVLD 524
Query: 384 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 418
+ ++ + + ++L +NLT N+ +
Sbjct: 525 YSLNHIMTSKKQELQHFP---SSLAFLNLTQNDFA 556
Score = 40.4 bits (95), Expect = 0.001
Identities = 63/415 (15%), Positives = 109/415 (26%), Gaps = 111/415 (26%)
Query: 30 LSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89
+ D F + +L TI + S L L +C
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERV------KDFSYNFGWQHLELVNCKFG----QFPTLK 323
Query: 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 149
L L + + L L+ +++S N +G +S
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDL---------PSLEFLDLSRNGLSFKGC-----CSQSD 369
Query: 150 GMAAAL-VLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQ------ 202
+L L +LS N +
Sbjct: 370 FGTTSLKYL-----------------------------DLSFNGVITMSSNFLGLEQLEH 400
Query: 203 ---SHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEE 259
H+N Q S + L+ LD+S L +LE
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLR-----NLIYLDISHTHTRVAFNGIFNGL------SSLEV 449
Query: 260 LKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK 319
LK+ N L + L + +LE F
Sbjct: 450 LKMAGNSFQEN---FLPDIFTEL----------RNLTFLDLSQCQLEQLSPT----AFNS 492
Query: 320 LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSL 379
L +L+ + M N + + + ++ +L+ L+ + N I + SL
Sbjct: 493 LSSLQVLNMSHNNFFSL----DTFPYKCLNSLQVLDYSLNHIMT---SKKQELQHFPSSL 545
Query: 380 AILNL------GDCLLKSAGASSIAKYLTDNTTL--EDVNLTCNEISVQGGLDLV 426
A LNL C S +++ D L E + C S + G+ ++
Sbjct: 546 AFLNLTQNDFACTC-----EHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 595
Score = 34.6 bits (80), Expect = 0.073
Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
L +F +L+ L +++ Q + + AF L+ LN++ N
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQL----SPTAFNSLSSLQVLNMSHNNFF--SLDT--FP 513
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 107
L SL +L+ + ++ + + ++L +NLT N+ +
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFP---SSLAFLNLTQNDFA 556
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 76.6 bits (189), Expect = 4e-15
Identities = 80/445 (17%), Positives = 145/445 (32%), Gaps = 90/445 (20%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
F +L L +++ + IY + D F+ +L L L N + + + ALS
Sbjct: 53 FSRLINLTFLDLTRCQIYWIH----EDTFQSQHRLDTLVLTANPLIF---MAET-ALSGP 104
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L L + S L + TLE + L N IS + L KLK
Sbjct: 105 KALKHLFFIQTGIS----SIDFIPLHNQKTLESLYLGSNHIS---SIKL-PKGFPTEKLK 156
Query: 126 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDN 185
++ N E+M L ++ L L
Sbjct: 157 VLDFQNNAIHYLSKEDMSSLQQA----TNLSL---------------------------- 184
Query: 186 SNLSHN-----DSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPI 240
NL+ N + +A QS N + + T L D I
Sbjct: 185 -NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243
Query: 241 GVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300
L S +E + L + + S H L+
Sbjct: 244 SPAVFEGLCEMS----VESINLQKHYFF----NISSNTFHCFSG----------LQELDL 285
Query: 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 360
L L + L TL+++ + N ++ + +L HL++ NT
Sbjct: 286 TATHLSE-----LPSGLVGLSTLKKLVLSANKFENLC----QISASNFPSLTHLSIKGNT 336
Query: 361 ITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 420
+ + G L L +L L+L ++++ ++ L + + L+ +NL+ NE
Sbjct: 337 K--RLELGTG-CLENLENLRELDLSHDDIETSDCCNLQ--LRNLSHLQSLNLSYNEPL-- 389
Query: 421 GGLDLVKAMKNKTKLKQINVSENQF 445
L +A K +L+ ++++ +
Sbjct: 390 -SLK-TEAFKECPQLELLDLAFTRL 412
Score = 67.3 bits (165), Expect = 4e-12
Identities = 56/418 (13%), Positives = 119/418 (28%), Gaps = 82/418 (19%)
Query: 31 SDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90
+ F L L+L I + I L L L L L
Sbjct: 50 NTTFSRLINLTFLDLTRCQIYW---IHED-TFQSQHRLDTLVLTANPLIF----MAETAL 101
Query: 91 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE---MEKLMK 147
+ L+ + IS + L N+ L+ + + N + + EKL
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPL----HNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157
Query: 148 SFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNS 207
L + N+ + + + ++ +
Sbjct: 158 -------LDFQ--------------------------NNAIHYLSKEDMSSLQQATNLSL 184
Query: 208 NQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL 267
N + N A L+ + +GL + S L +
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS----LWLGTFEDMDD 240
Query: 268 GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE 327
+ E S ++ ++ N + + F L+ ++
Sbjct: 241 E----DISPAVFEGLCEMS--------VESINLQKHYFFN----ISSNTFHCFSGLQELD 284
Query: 328 MPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC 387
+ + + L L+ L L+ N + + S PSL L++
Sbjct: 285 LTATHL-----SELPSGLVGLSTLKKLVLSANKFEN---LC-QISASNFPSLTHLSIKGN 335
Query: 388 LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ + L + L +++L+ ++I +L ++N + L+ +N+S N+
Sbjct: 336 TKRLELGTGC---LENLENLRELDLSHDDIETSDCCNL--QLRNLSHLQSLNLSYNEP 388
Score = 55.0 bits (133), Expect = 3e-08
Identities = 67/441 (15%), Positives = 129/441 (29%), Gaps = 106/441 (24%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+++L I+ + +NL + I
Sbjct: 224 NSTIQSLWLGTFEDMDDED--ISPAVFEGLCEMSVESINLQKHYFF---NISSN-TFHCF 277
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
L L+L L S + L +TL+ + L+ N+ + N L
Sbjct: 278 SGLQELDLTATHL-----SELPSGLVGLSTLKKLVLSANKFENLCQISA----SNFPSLT 328
Query: 126 QINVSENQFGEEGVEEMEKLMKSFGMAAAL-VLEDDEGECSDEEQDEESEEENDSDAEGD 184
+++ N E + +++ L L
Sbjct: 329 HLSIKGNTKRLELGTGCLENLEN------LREL--------------------------- 355
Query: 185 NSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244
+LSH+D S + Q N S+ L L+LS N + E
Sbjct: 356 --DLSHDDIETSDCCNLQLRNLSH------------------LQSLNLSYNEPLSLKTEA 395
Query: 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304
+ + LE L L L + + + LH LKV +
Sbjct: 396 FKECPQ------LELLDLAFTRLKVKDAQSPFQNLH-------------LLKVLNLSHSL 436
Query: 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYK 364
L+ + +F L L+ + + N +++ + L L L+ ++
Sbjct: 437 LDISSEQ----LFDGLPALQHLNLQGNHFPKG-NIQKTNSLQTLGRLEILVLSFCDLSS- 490
Query: 365 GAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLD 424
I A + L + ++L L +S + + +NL N IS +
Sbjct: 491 --ID-QHAFTSLKMMNHVDLSHNRL-----TSSSIEALSHLKGIYLNLASNHIS---IIL 539
Query: 425 LVKAMKNKTKLKQINVSENQF 445
+ ++ + IN+ +N
Sbjct: 540 P-SLLPILSQQRTINLRQNPL 559
Score = 45.4 bits (108), Expect = 3e-05
Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 12/130 (9%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
+ L L+ + + N + ++AF+E +L L+L +
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLK----TEAFKECPQLELLDLAFTRLK---VKDAQSPFQN 423
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 124
L L +LNL LL S + L+ +NL N +G + +++ +L
Sbjct: 424 LHLLKVLNLSHSLLD----ISSEQLFDGLPALQHLNLQGNHFP-KGNIQKTNSLQTLGRL 478
Query: 125 KQINVSENQF 134
+ + +S
Sbjct: 479 EILVLSFCDL 488
Score = 45.4 bits (108), Expect = 3e-05
Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 14/132 (10%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
+ F L+ +++ + + L L+ L L+ N + +
Sbjct: 271 SNTFHCFSGLQELDLTATHL-----SELPSGLVGLSTLKKLVLSANKFEN---LC-QISA 321
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
S PSL L++ + + L + L +++L+ ++I +L ++N +
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGC---LENLENLRELDLSHDDIETSDCCNL--QLRNLS 376
Query: 123 KLKQINVSENQF 134
L+ +N+S N+
Sbjct: 377 HLQSLNLSYNEP 388
Score = 41.9 bits (99), Expect = 4e-04
Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 28/149 (18%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F+ L L+ + + + + F+ L+HLNL N +L
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISS----EQLFDGLPALQHLNLQGNHFPKGNIQKTN-SLQT 474
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGG---------LDL 114
L L IL L C L S T + V+L+ N + S L+L
Sbjct: 475 LGRLEILVLSFCDLS----SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNL 530
Query: 115 VK---------AMKNKTKLKQINVSENQF 134
+ ++ + IN+ +N
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPL 559
Score = 32.3 bits (74), Expect = 0.36
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 13/103 (12%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
+ L LE + + + + AF K + H++L+ N +T + ALS
Sbjct: 471 SLQTLGRLEILVLSFCDLSSID----QHAFTSLKMMNHVDLSHNRLTS---SSIE-ALSH 522
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 107
L + LNL + + L + +NL N +
Sbjct: 523 LKGI-YLNLASNHIS----IILPSLLPILSQQRTINLRQNPLD 560
Score = 30.4 bits (69), Expect = 1.3
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 12/96 (12%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 409
+ L + N + I S+L +L L+L C + + L+
Sbjct: 34 STECLEFSFNVLP---TIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQ----SQHRLDT 85
Query: 410 VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ LT N + + A+ LK + +
Sbjct: 86 LVLTANPLI---FMA-ETALSGPKALKHLFFIQTGI 117
Score = 29.2 bits (66), Expect = 3.4
Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 14/109 (12%)
Query: 26 GITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85
G+ + + L + N + I S+L +L L+L C + +
Sbjct: 23 GLNEIPGTLPNS--TECLEFSFNVLP---TIQNT-TFSRLINLTFLDLTRCQIYWIHEDT 76
Query: 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134
L+ + LT N + + A+ LK + +
Sbjct: 77 FQ----SQHRLDTLVLTANPLI---FMA-ETALSGPKALKHLFFIQTGI 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 76.5 bits (188), Expect = 5e-15
Identities = 64/477 (13%), Positives = 145/477 (30%), Gaps = 60/477 (12%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNT-ITYKGAIPLGQ 60
+ A+ LE + + + + + ++ +F K + L L+ + G L
Sbjct: 97 IEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSF---KNFKVLVLSSCEGFSTDG---LAA 150
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 120
+ +L L+L + + ++ + T+L +N++C V L + +
Sbjct: 151 IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEV-SFSALERLVTR 209
Query: 121 KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSD 180
LK + ++ +E++ L++ LE+ E +
Sbjct: 210 CPNLKSLKLNRA----VPLEKLATLLQRAPQ-----LEELGTGGYTAEVRPDVYSGLSVA 260
Query: 181 AEGDNSNLSHNDSNHSHNASNQSHNNSNQS---------HNTSNQSHMSLKTGARLVELD 231
G + + A + + S L +L L
Sbjct: 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW 320
Query: 232 LSDNAFGPIGVEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLS-KALHDCYESSKKE 289
+ D I GL L +S C L EL++ + L+ + L K
Sbjct: 321 VLDY----IEDAGLEVL--ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK- 373
Query: 290 GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV-------GITALS 342
L+ + ++ N +A + + ++ G A+
Sbjct: 374 -----LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV 428
Query: 343 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 402
E K+LR L+L+ +T K +G + +L++ G +
Sbjct: 429 ---EHCKDLRRLSLS-GLLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVLSGCD 481
Query: 403 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
L + + + L ++ ++ + +S + + + M
Sbjct: 482 S---LRKLEIRDCPFGDKALLANASKLET---MRSLWMSSCSVSFGACKLLGQKMPK 532
Score = 53.4 bits (128), Expect = 9e-08
Identities = 60/462 (12%), Positives = 124/462 (26%), Gaps = 87/462 (18%)
Query: 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 98
NL + + S L + L ++ IAK +
Sbjct: 78 HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSF---KNFKV 134
Query: 99 VNLT-CNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVL 157
+ L+ C S G + +N LK++++ E+ + + ++ +L +
Sbjct: 135 LVLSSCEGFSTDGLAAIAATCRN---LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI 191
Query: 158 EDDEGECSDEEQDEES--------EEENDSDAEGDNSNLSHNDSNHSHNASN-QSHNNSN 208
E S E + + A + A +
Sbjct: 192 SCLASEVSFS--ALERLVTRCPNLKSLKLNRAVPLEKLAT-----LLQRAPQLEELGTGG 244
Query: 209 QSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG 268
+ + L + + F L + S C L L L
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY--SVCSRLTTLNL------ 296
Query: 269 ITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL----- 323
+ + S L K L+ + +E+ G ++LA+ K L+ L
Sbjct: 297 -SYATVQSYDLVKLLCQCPK------LQRLWV-LDYIEDAGLEVLASTCKDLRELRVFPS 348
Query: 324 -ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL------ 376
V P + G+ ++S L + +T I + + +
Sbjct: 349 EPFVMEPNVALTEQGLVSVSMGC---PKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405
Query: 377 --------------------------PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV 410
L L+L L I Y +E +
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYA---KKMEML 461
Query: 411 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE 452
++ S G + + L+++ + + FG++ +
Sbjct: 462 SVAFAGDSDLG---MHHVLSGCDSLRKLEIRDCPFGDKALLA 500
Score = 49.5 bits (118), Expect = 2e-06
Identities = 51/297 (17%), Positives = 94/297 (31%), Gaps = 34/297 (11%)
Query: 1 MLAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQ 60
L+ K L + +G + L + +L LNL+ T+ L +
Sbjct: 256 GLSVALSGCKELRCL----SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD---LVK 308
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL------EDVNLTCNEISVQGGLDL 114
L + P L L + D ++ AG +A D L V ++ QG L
Sbjct: 309 LLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG---L 364
Query: 115 VKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESE 174
V KL+ + Q + + + + L E + D E +
Sbjct: 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMT---RFRLCIIEPKAPDYLTLEPLD 421
Query: 175 EENDSDAEGDNS----NLSHNDSNH-----SHNASNQSHNNSNQSHNTSNQSHMSLKTGA 225
+ E +LS ++ A + + ++ H L
Sbjct: 422 IGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDC 282
L +L++ D P G + L S + L +++ + CKLL + +
Sbjct: 482 SLRKLEIRDC---PFGDKALLANA--SKLETMRSLWMSSCSVSFGACKLLGQKMPKL 533
Score = 48.4 bits (115), Expect = 4e-06
Identities = 53/457 (11%), Positives = 116/457 (25%), Gaps = 105/457 (22%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLND--NTITYKGAIPLG 59
L + + L+ +++ + V + L+ + +L L + L
Sbjct: 203 LERLVTRCPNLKSLKLNRA----VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258
Query: 60 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 119
ALS L L+ G A ++ + L +NL+ + + L+
Sbjct: 259 VALSGCKELRCLS-GFWDAVPAYLPAVYSVC---SRLTTLNLSYATVQSYDLVKLLCQCP 314
Query: 120 NKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDS 179
L+++ V + + G+E + K
Sbjct: 315 K---LQRLWVL-DYIEDAGLEVLASTCK-------------------------------- 338
Query: 180 DAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGP 239
+L S + + + S +L +
Sbjct: 339 -------DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP-----KLESVLYFCRQMTN 386
Query: 240 IGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299
+ +A + +L + L+ D
Sbjct: 387 AALITIA-----RNRPNMTRFRL--CIIEPKAPDYLTLEPLD------------------ 421
Query: 300 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
G + K L+ L + + K + L++
Sbjct: 422 --------IGFGAIVEHCKDLRRL-------SLSGLLTDKVFEYIGTYAKKMEMLSVAFA 466
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419
+ G + LS SL L + DC + A L T+ + ++ +S
Sbjct: 467 GDSDLG---MHHVLSGCDSLRKLEIRDCPFGDKALLANASKL---ETMRSLWMSSCSVSF 520
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456
L + M ++ I+ +E++
Sbjct: 521 GACKLLGQKMPK-LNVEVIDERGAPDSRPESCPVERV 556
Score = 40.7 bits (95), Expect = 0.001
Identities = 27/225 (12%), Positives = 63/225 (28%), Gaps = 32/225 (14%)
Query: 226 RLVELDLSDNAFGPIGVEGLADL---LRS---SCCFALEELKLNNNGLGITGCKLLSKAL 279
R + + + +RS + L +G G +
Sbjct: 42 RWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMS 101
Query: 280 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 339
L+ R + ++ +++A FK K L +
Sbjct: 102 SSY----------TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV-----LSSCEGFSTD 146
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC--LLKSAGASSI 397
L+ +NL+ L+L ++ + L SL LN+ + + +
Sbjct: 147 GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206
Query: 398 AKYLTDNTTLEDVNLT-CNEISVQGGLDLVKAMKNKTKLKQINVS 441
+ L+ + L + L ++ +L+++
Sbjct: 207 VTRCPN---LKSLKLNRAVPLE-----KLATLLQRAPQLEELGTG 243
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 72.0 bits (177), Expect = 2e-13
Identities = 79/485 (16%), Positives = 160/485 (32%), Gaps = 98/485 (20%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
+L+ L+ + + N I + + N L+ L L+ N I P
Sbjct: 140 TQVQLENLQELLLSNNKI--QALKSEELDIFANSSLKKLELSSNQIK--EFSP--GCFHA 193
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ-----GGLDLVKAMK 119
+ L L L + L + + L NT++ +++L+ +++S GL
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELA-NTSIRNLSLSNSQLSTTSNTTFLGL------- 245
Query: 120 NKTKLKQINVSENQF---GEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEE 176
T L +++S N G + + +L LE + + +
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY-------FFLEYN------------NIQH 286
Query: 177 NDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNA 236
S + N+ + + S + S + + + S + L L++ DN
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS------FQWLKCLEHLNMEDND 340
Query: 237 FGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALK 296
I L+ L+ L L+N+ + ++ S L
Sbjct: 341 IPGIKSNMFTGLIN------LKYLSLSNSFTSLRTLT--NETFVSLAHSP--------LH 384
Query: 297 VFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV-------GITAL-------- 341
+ +N++ + + F L LE +++ N I G+ +
Sbjct: 385 ILNLTKNKISK----IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440
Query: 342 ------SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 395
++F +L+ L L + + P L +L IL+L + + +
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP--SPFQPLRNLTILDLSNNNIA----N 494
Query: 396 SIAKYLTDNTTLEDVNLTCNEISV----QGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 451
L LE ++L N ++ + +K + L +N+ N F E VE
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554
Query: 452 EMEKL 456
+ L
Sbjct: 555 VFKDL 559
Score = 66.6 bits (163), Expect = 8e-12
Identities = 79/446 (17%), Positives = 152/446 (34%), Gaps = 100/446 (22%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F L + + N I + ++ F + K L L+L+ N ++ LG +
Sbjct: 92 TFAFCTNLTELHLMSNSIQKI----KNNPFVKQKNLITLDLSHNGLSS---TKLG-TQVQ 143
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 124
L +L L L + +++ + + + N++L+ + L+ N+I +L
Sbjct: 144 LENLQELLLSNNKIQALKSEELD--IFANSSLKKLELSSNQIKEFSPGCF----HAIGRL 197
Query: 125 KQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGD 184
+ ++ Q G EKL + L
Sbjct: 198 FGLFLNNVQLGPSL---TEKLCLELANTSIRNL--------------------------- 227
Query: 185 NSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244
+LS++ + + N + +N L LDLS N +G +
Sbjct: 228 --SLSNSQLSTTSNTTFLGLKWTN------------------LTMLDLSYNNLNVVGNDS 267
Query: 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304
A L + LE L N + L S +LH + ++ R+
Sbjct: 268 FAWLPQ------LEYFFLEYNNIQ----HLFSHSLHGLFN----------VRYLNLKRSF 307
Query: 305 LE-----NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
+ K+ F+ LK LE + M N I + S+ F NL++L+L+++
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK----SNMFTGLINLKYLSLSNS 363
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419
+ + L ILNL + + + + LE ++L NEI
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL----GHLEVLDLGLNEIG- 418
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQF 445
+ + + +I +S N++
Sbjct: 419 --QELTGQEWRGLENIFEIYLSYNKY 442
Score = 57.3 bits (139), Expect = 6e-09
Identities = 71/432 (16%), Positives = 136/432 (31%), Gaps = 92/432 (21%)
Query: 31 SDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90
+D+F +L + L N I +L L ++ LNL K + + + +
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQ--HLFS--HSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320
Query: 91 TDN-----TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 145
D LE +N+ N+I G+ LK +++S + + +
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIP---GIKS-NMFTGLINLKYLSLSNSFTSLRTLT--NET 374
Query: 146 MKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHND-SNHSHNASNQSH 204
S + +L NL+ N S +A +
Sbjct: 375 FVSLAHSPLHIL-----------------------------NLTKNKISKIESDAFSWLG 405
Query: 205 N------NSNQ-SHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFAL 257
+ N+ + Q L+ + E+ LS N + + A + +L
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLE---NIFEIYLSYNKYLQLTRNSFALV------PSL 456
Query: 258 EELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVF 317
+ L L L L + N + N + +
Sbjct: 457 QRLMLRRVAL--KNVDSSPSPFQPLR----------NLTILDLSNNNIAN----INDDML 500
Query: 318 KKLKTLERVEMPQNGIYHVGITALS----DAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
+ L+ LE +++ N + + A + +L LNL N IP+
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE---IPVE-VF 556
Query: 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 433
L L I++LG L + A + +L+ +NL N I+ ++
Sbjct: 557 KDLFELKIIDLGLNNLN----TLPASVFNNQVSLKSLNLQKNLIT---SVEKKVFGPAFR 609
Query: 434 KLKQINVSENQF 445
L ++++ N F
Sbjct: 610 NLTELDMRFNPF 621
Score = 57.3 bits (139), Expect = 6e-09
Identities = 80/492 (16%), Positives = 153/492 (31%), Gaps = 86/492 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+L+ +E+ N I F +L L LN+ + L L+
Sbjct: 167 IFANSSLKKLELSSNQIKEFS----PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA-N 221
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
S+ L+L + L + ++ T L ++L+ N ++V G + +L+
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLG--LKWTNLTMLDLSYNNLNVVGN----DSFAWLPQLE 275
Query: 126 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDN 185
+ N + + S + + + + + S + D +
Sbjct: 276 YFFLEYNNI--QHLFS-----HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328
Query: 186 SNL-----SHN-----DSNHSHNASNQSH----NNSNQSHNTSNQSHMSLKTGARLVELD 231
L N SN N + N+ +N++ +SL L L+
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS-PLHILN 387
Query: 232 LSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 291
L+ N I + + L LE L L N +G L +
Sbjct: 388 LTKNKISKIESDAFSWLGH------LEVLDLGLNEIGQE---LTGQEWRGL--------- 429
Query: 292 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 351
+ N+ + F + +L+R+ + + + + + F+ +NL
Sbjct: 430 -ENIFEIYLSYNKYLQ----LTRNSFALVPSLQRLMLRRVALK--NVDSSPSPFQPLRNL 482
Query: 352 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS----AGASSIAKYLTDNTTL 407
L+L++N I I L L L IL+L L A +L + L
Sbjct: 483 TILDLSNNNIAN---INDD-MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538
Query: 408 EDVNLTCNEISVQGG-----------LDL---------VKAMKNKTKLKQINVSENQFGE 447
+NL N +DL N+ LK +N+ +N
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598
Query: 448 EGVEEMEKLMKS 459
+ ++
Sbjct: 599 VEKKVFGPAFRN 610
Score = 55.0 bits (133), Expect = 3e-08
Identities = 65/431 (15%), Positives = 127/431 (29%), Gaps = 88/431 (20%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAI-----P 57
F L LE+ + N I H+ S + +R+LNL + ++
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHL----FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320
Query: 58 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 117
+ L L LN+ D + ++ L+ ++L+ + S++ +
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG----LINLKYLSLSNSFTSLRTLTNETFV 376
Query: 118 MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL-VLEDDEGECSDEEQDEESEEE 176
+ L +N+++N+ + + +F L VL
Sbjct: 377 SLAHSPLHILNLTKNKISKIESD-------AFSWLGHLEVL------------------- 410
Query: 177 NDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQ----SHN-TSNQSHMSLKTGARLVELD 231
+L N+ + S+N + S L L
Sbjct: 411 ----------DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460
Query: 232 LSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 291
L A V+ + L L L+NN + + L
Sbjct: 461 LRRVALK--NVDSSPSPFQP--LRNLTILDLSNNNIA----NINDDMLEGLE-------- 504
Query: 292 PLALKVFIAGRNRL----ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEE 347
L++ N L ++ K L L + + NG + + F++
Sbjct: 505 --KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP----VEVFKD 558
Query: 348 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 407
L+ ++L N + +P + SL LNL L+ S L
Sbjct: 559 LFELKIIDLGLNNLNT---LP-ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF---RNL 611
Query: 408 EDVNLTCNEIS 418
++++ N
Sbjct: 612 TELDMRFNPFD 622
Score = 51.2 bits (123), Expect = 6e-07
Identities = 39/226 (17%), Positives = 78/226 (34%), Gaps = 38/226 (16%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 286
+ L+L+ N + + L L + N + KL +
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQ------LTSLDVGFNTIS----KLEPELCQKLPM-- 74
Query: 287 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 346
LKV N L + F L + + N I + ++ F
Sbjct: 75 --------LKVLNLQHNELSQ----LSDKTFAFCTNLTELHLMSNSIQKI----KNNPFV 118
Query: 347 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 406
+ KNL L+L+ N ++ LG +L +L L L + +++ + + + N++
Sbjct: 119 KQKNLITLDLSHNGLSS---TKLG-TQVQLENLQELLLSNNKIQALKSEELD--IFANSS 172
Query: 407 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE 452
L+ + L+ N+I +L + ++ Q G E+
Sbjct: 173 LKKLELSSNQIKEFSPGCF----HAIGRLFGLFLNNVQLGPSLTEK 214
Score = 50.8 bits (122), Expect = 6e-07
Identities = 41/220 (18%), Positives = 71/220 (32%), Gaps = 35/220 (15%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
+L LD+ N + E L L+ L L +N L +L K C
Sbjct: 50 QLTSLDVGFNTISKLEPELCQKLPM------LKVLNLQHNELS----QLSDKTFAFC--- 96
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L N ++ K+ F K K L +++ NG+
Sbjct: 97 -------TNLTELHLMSNSIQ----KIKNNPFVKQKNLITLDLSHNGLSSTK----LGTQ 141
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
+ +NL+ L L++N I + SL L L +K
Sbjct: 142 VQLENLQELLLSNNKIQ--ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA----IG 195
Query: 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
L + L ++ L + N T ++ +++S +Q
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQL 234
Score = 42.3 bits (100), Expect = 3e-04
Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 16/132 (12%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
AA F + L +++ N I + + ++ L+ LNL N ++ +
Sbjct: 42 AANFTRYSQLTSLDVGFNTISKLE----PELCQKLPMLKVLNLQHNELS---QLSDK-TF 93
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
+ +L L+L ++ L ++L+ N +S L
Sbjct: 94 AFCTNLTELHLMSNSIQ----KIKNNPFVKQKNLITLDLSHNGLS---STKL-GTQVQLE 145
Query: 123 KLKQINVSENQF 134
L+++ +S N+
Sbjct: 146 NLQELLLSNNKI 157
Score = 30.7 bits (70), Expect = 1.3
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 349 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 408
N+ LNL N + ++ L L++G + + + L+
Sbjct: 25 TNITVLNLTHNQLR--RLPA--ANFTRYSQLTSLDVGFNTI----SKLEPELCQKLPMLK 76
Query: 409 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+NL NE+S K T L ++++ N
Sbjct: 77 VLNLQHNELSQL----SDKTFAFCTNLTELHLMSNSI 109
Score = 28.8 bits (65), Expect = 4.2
Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 14/109 (12%)
Query: 26 GITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85
+T + D N + LNL N + ++ L L++G + +
Sbjct: 15 KLTQVPDDLPTN--ITVLNLTHNQLR--RLPA--ANFTRYSQLTSLDVGFNTI----SKL 64
Query: 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134
+ L+ +NL NE+S K T L ++++ N
Sbjct: 65 EPELCQKLPMLKVLNLQHNELSQL----SDKTFAFCTNLTELHLMSNSI 109
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 71.0 bits (174), Expect = 3e-13
Identities = 71/445 (15%), Positives = 148/445 (33%), Gaps = 54/445 (12%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
+VFK + LE++++ N + + L+HL+L+ N A+P+ +
Sbjct: 62 ISVFKFNQELEYLDLSHNKLVKISCHPT-------VNLKHLDLSFNAFD---ALPICKEF 111
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
+ L L L L+ + IA L + L + T E GL
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAH-LNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170
Query: 123 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAE 182
S A L L + + D +
Sbjct: 171 VFPTNKEFHFILD-----------VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219
Query: 183 GDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQ-SHMSLKTGARLVELDLSDNAFGPIG 241
SNL+ N+ + N+ + + S++ L+ + D S + +
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279
Query: 242 VEGLA-DLLRSSCCFALEEL-KLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299
+ + D+ + E +N ++G +++
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS---------KISPFLHLD 330
Query: 300 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
N L + L LE + + N + ++ +++ + K+L+ L+++ N
Sbjct: 331 FSNNLL----TDTVFENCGHLTELETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQN 384
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419
+++Y S SL LN+ +L +I + L ++ ++L N+I
Sbjct: 385 SVSY---DEKKGDCSWTKSLLSLNMSSNILT----DTIFRCLPPR--IKVLDLHSNKIKS 435
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQ 444
+ K + L+++NV+ NQ
Sbjct: 436 -----IPKQVVKLEALQELNVASNQ 455
Score = 55.6 bits (134), Expect = 2e-08
Identities = 56/441 (12%), Positives = 133/441 (30%), Gaps = 62/441 (14%)
Query: 27 ITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85
I+ L + KLR L ++ N I + + L L+L L
Sbjct: 33 ISELWTSDILSLSKLRILIISHNRIQ---YLDIS-VFKFNQELEYLDLSHNKLVKISCHP 88
Query: 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 145
L+ ++L+ N L + K N ++LK + +S + V + L
Sbjct: 89 T-------VNLKHLDLSFNAFDA---LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138
Query: 146 --MKSFGMAAALVLEDDEGE----CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNA 199
K + E ++ E + E + D S + + S+
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198
Query: 200 SNQSHNNSNQSHNT-SNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALE 258
N + + + + L ++ + N+F + L + ++ +
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF----IRILQLVWHTT----VW 250
Query: 259 ELKLNNNGL-GITGCKLLSKALHDCYESSKKEGSPLALKVFIAG---------RNRLENE 308
++N L G + + S + +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310
Query: 309 GAKMLAA-VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAI 367
G +M+ K+ ++ N + + + L L L N + +
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDT----VFENCGHLTELETLILQMNQLK---EL 363
Query: 368 P-LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS--VQGGLD 424
+ + +++ SL L++ + + +L +N++ N ++ + L
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT---KSLLSLNMSSNILTDTIFRCLP 420
Query: 425 LVKAMKNKTKLKQINVSENQF 445
++K +++ N+
Sbjct: 421 --------PRIKVLDLHSNKI 433
Score = 39.5 bits (92), Expect = 0.002
Identities = 19/140 (13%), Positives = 44/140 (31%), Gaps = 18/140 (12%)
Query: 310 AKMLAAVFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIP 368
+++ + L L + + N I L F+ N+ L +L+L+ N + I
Sbjct: 34 SELWTSDILSLSKLRILIISHNRI-----QYLDISVFKFNQELEYLDLSHNKLV---KIS 85
Query: 369 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS--VQGGLDLV 426
+L L+L + ++ L+ + L+ + + +
Sbjct: 86 CH----PTVNLKHLDLSFNAFDALPICKEFGNMSQ---LKFLGLSTTHLEKSSVLPIAHL 138
Query: 427 KAMKNKTKLKQINVSENQFG 446
K L + +
Sbjct: 139 NISKVLLVLGETYGEKEDPE 158
Score = 30.6 bits (69), Expect = 1.1
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITY--KGAIP-- 57
+A + ++K+L+ +++ QN + + K L LN++ N +T +P
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEK---KGDCSWTKSLLSLNMSSNILTDTIFRCLPPR 422
Query: 58 -------------LGQALSKLPSLAILNLGDCLLKS 80
+ + + KL +L LN+ LKS
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS 458
Score = 29.8 bits (67), Expect = 2.4
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 27 ITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 75
I ++ + + L+ LN+ N + +P G +L SL + L
Sbjct: 433 IKSIPKQVVKLEALQELNVASNQLKS---VPDG-IFDRLTSLQKIWLHT 477
Score = 28.7 bits (64), Expect = 4.4
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 30/133 (22%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 286
L +LD+S N+ +G +S L L +++N L + + C
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKS-----LLSLNMSSNIL--------TDTIFRCLPPR 422
Query: 287 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 346
+KV N++++ + KL+ L+ + + N + V F+
Sbjct: 423 --------IKVLDLHSNKIKS-----IPKQVVKLEALQELNVASNQLKSVP----DGIFD 465
Query: 347 ENKNLRHLNLNDN 359
+L+ + L+ N
Sbjct: 466 RLTSLQKIWLHTN 478
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 70.1 bits (172), Expect = 4e-13
Identities = 57/446 (12%), Positives = 141/446 (31%), Gaps = 75/446 (16%)
Query: 1 MLAAVFKKLKTLEHVEMPQNGIYHVGITALS-DAFEENKKLRHLNLNDNTITYKGAIPLG 59
+ ++F L L+ + + + + F L L + ++
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVET----FSEIRRIDFAGLTSLNELEIKALSLRN---YQSQ 166
Query: 60 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 119
+L + + L L +++ + L ++ L
Sbjct: 167 -SLKSIRDIHHLTLHLSESAFLLEIF----ADILSSVRYLELRDTNLARFQFSPLPVDEV 221
Query: 120 NKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDS 179
+ + +K++ + +E E+ KL++ + + +D C+ + + E+D
Sbjct: 222 S-SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD----CTLNGLGDFNPSESDV 276
Query: 180 DAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGP 239
+E H +T +K + + ++
Sbjct: 277 VSELGKVETVTIRRLHI------PQFYLFYDLSTVYSLLEKVK------RITVENSKVFL 324
Query: 240 IGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299
+ L LE L L+ N + K +S +G+ +L+ +
Sbjct: 325 VPCSFSQHLKS------LEFLDLSENLMVEEYLK-----------NSACKGAWPSLQTLV 367
Query: 300 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
+N L + + LK L +++ +N + D+ + + +R LNL+
Sbjct: 368 LSQNHLRSMQ--KTGEILLTLKNLTSLDISRNTF-----HPMPDSCQWPEKMRFLNLSST 420
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419
I + +L +L++ + L S + +L L+++ ++ N++
Sbjct: 421 GIR---VVKTCI----PQTLEVLDVSNNNL-----DSFSLFLPR---LQELYISRNKLKT 465
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQF 445
+ L + +S NQ
Sbjct: 466 ------LPDASLFPVLLVMKISRNQL 485
Score = 66.7 bits (163), Expect = 6e-12
Identities = 63/448 (14%), Positives = 137/448 (30%), Gaps = 73/448 (16%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
+ L+ + + + I + DAF L HL+L+DN ++ ++
Sbjct: 43 HGDLRACANLQVLILKSSRINTIE----GDAFYSLGSLEHLDLSDNHLS---SLSSS-WF 94
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT-CNEISVQGGLDLVKAMKNK 121
L SL LNL ++ G +S+ L T L+ + + S +D
Sbjct: 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNL---TNLQTLRIGNVETFSEIRRIDF----AGL 147
Query: 122 TKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDE---ESEEEND 178
T L ++ + + ++ + L L E E +
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRD----IHHLTLHLSESAFLLEIFADILSSVRYLEL 203
Query: 179 SDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGA-RLVELDLSDNAF 237
D S + + + + + S + L L E++ D
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263
Query: 238 GPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKV 297
+G ++ S +E + + +
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIP----------------------------- 294
Query: 298 FIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN 357
+ L+ V+ L+ ++R+ + + ++ V + K+L L+L+
Sbjct: 295 --------QFYLFYDLSTVYSLLEKVKRITVENSKVFLVP----CSFSQHLKSLEFLDLS 342
Query: 358 DNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI 417
+N + + PSL L L L+S + L L ++++ N
Sbjct: 343 ENLMVEEYLKNSA-CKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTF 399
Query: 418 SVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ + + K++ +N+S
Sbjct: 400 H-----PMPDSCQWPEKMRFLNLSSTGI 422
Score = 42.8 bits (101), Expect = 2e-04
Identities = 33/246 (13%), Positives = 73/246 (29%), Gaps = 37/246 (15%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L L L + I + L LE L L++N L L S
Sbjct: 51 NLQVLILKSSRINTIEGDAFYSLGS------LEHLDLSDNHLS----SLSSSWFGPLS-- 98
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS-DA 344
+LK N + + ++F L L+ + + + +
Sbjct: 99 --------SLKYLNLMGNPYQTL---GVTSLFPNLTNLQTLRIGNVET----FSEIRRID 143
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404
F +L L + ++ +L + + L L
Sbjct: 144 FAGLTSLNELEIKALSLRN---YQSQ-SLKSIRDIHHLTLHLSESAFLLEIF----ADIL 195
Query: 405 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 464
+++ + L ++ L + + +K++ + +E E+ KL++ +
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVS-SPMKKLAFRGSVLTDESFNELLKLLRYILELS 254
Query: 465 ALVLED 470
+ +D
Sbjct: 255 EVEFDD 260
Score = 40.5 bits (95), Expect = 0.001
Identities = 33/193 (17%), Positives = 60/193 (31%), Gaps = 60/193 (31%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 286
+ LDLS N IG L L+ L L ++ +
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACAN------LQVLILKSSRI------------------- 62
Query: 287 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 346
N +E + F L +LE +++ N + + S F
Sbjct: 63 ----------------NTIEGD-------AFYSLGSLEHLDLSDNHLSSLS----SSWFG 95
Query: 347 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK-YLTDNT 405
+L++LNL N + + L +L L +G+ S I + T
Sbjct: 96 PLSSLKYLNLMGNPYQ---TLGVTSLFPNLTNLQTLRIGNVET----FSEIRRIDFAGLT 148
Query: 406 TLEDVNLTCNEIS 418
+L ++ + +
Sbjct: 149 SLNELEIKALSLR 161
Score = 33.9 bits (78), Expect = 0.11
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 409
++ L+L+ N ITY I G L +L +L L + + + +LE
Sbjct: 27 AMKSLDLSFNKITY---IGHG-DLRACANLQVLILKSSRINTIEGDA----FYSLGSLEH 78
Query: 410 VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
++L+ N +S L + LK +N+ N +
Sbjct: 79 LDLSDNHLSS---LS-SSWFGPLSSLKYLNLMGNPY 110
Score = 32.8 bits (75), Expect = 0.27
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 40 LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV 99
++ L+L+ N ITY I G L +L +L L + + + +LE +
Sbjct: 28 MKSLDLSFNKITY---IGHG-DLRACANLQVLILKSSRINTIEGDA----FYSLGSLEHL 79
Query: 100 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134
+L+ N +S L + LK +N+ N +
Sbjct: 80 DLSDNHLSS---LS-SSWFGPLSSLKYLNLMGNPY 110
Score = 31.2 bits (71), Expect = 0.81
Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 20/109 (18%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
L + L L+ + + +N + + +L L + ++ N + +P G
Sbjct: 443 LDSFSLFLPRLQELYISRNKLKTLPDASLF------PVLLVMKISRNQLKS---VPDG-I 492
Query: 62 LSKLPSLAILNLG------DCLLKSAGASSIAKYLTDNTTLEDVNLTCN 104
+L SL + L C ++++L N+ E + C+
Sbjct: 493 FDRLTSLQKIWLHTNPWDCSCPRIDY----LSRWLNKNSQKEQGSAKCS 537
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 68.4 bits (166), Expect = 1e-12
Identities = 21/157 (13%), Positives = 57/157 (36%), Gaps = 12/157 (7%)
Query: 257 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAV 316
L+ L++ + GL + + + + E L +++ + + + +
Sbjct: 195 LKSLEIISGGLPDSVVEDILGSDLPNLEK---------LVLYVGVEDYGFDGDMNVFRPL 245
Query: 317 FK--KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 374
F + L+ + + +V + ++ + L ++++ +T +GA L +
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVD 304
Query: 375 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVN 411
K+ L +N+ L + K L + D
Sbjct: 305 KIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341
Score = 68.1 bits (165), Expect = 1e-12
Identities = 36/249 (14%), Positives = 83/249 (33%), Gaps = 23/249 (9%)
Query: 214 SNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCK 273
N+ + G ++D + I L+ +L + LNN + T
Sbjct: 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM-------PLLNNLKIKGTNNL 185
Query: 274 LLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLA-AVFKKLKTLERVEMPQNG 332
+ K LK L + + + + L+ L ++
Sbjct: 186 SIGKKPRPN------------LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDY 233
Query: 333 IYHVGITALSDAFEENK--NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLK 390
+ + F +++ NL+ L + D ++ LP L +++ +L
Sbjct: 234 GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLT 292
Query: 391 SAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV 450
GA + ++ L+ +N+ N +S + +L K++ K + ++ + +
Sbjct: 293 DEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDYSYPMI 352
Query: 451 EEMEKLMKS 459
E+E
Sbjct: 353 TELEHHHHH 361
Score = 65.0 bits (157), Expect = 1e-11
Identities = 22/150 (14%), Positives = 57/150 (38%), Gaps = 3/150 (2%)
Query: 1 MLAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENK--KLRHLNLNDNTITYKGAIPL 58
+L + L+ L ++ + + F +++ L+ L + D
Sbjct: 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272
Query: 59 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM 118
++ LP L +++ +L GA + ++ L+ +N+ N +S + +L K++
Sbjct: 273 LES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331
Query: 119 KNKTKLKQINVSENQFGEEGVEEMEKLMKS 148
K + ++ + + E+E
Sbjct: 332 PMKIDVSDSQEYDDDYSYPMITELEHHHHH 361
Score = 46.9 bits (110), Expect = 8e-06
Identities = 29/261 (11%), Positives = 71/261 (27%), Gaps = 16/261 (6%)
Query: 205 NNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNN 264
K + GV + +L+ +L+++ +
Sbjct: 57 IAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGX 116
Query: 265 NGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLE 324
G C ++ + + E L + L+ V + L
Sbjct: 117 WGYEGEDCSDIADGIVENKEKFAHF-EGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLN 175
Query: 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384
+++ LS + NL+ L + + + S LP+L L L
Sbjct: 176 NLKIKGT-------NNLSIGKKPRPNLKSLEIISGGLPDSVVEDI--LGSDLPNLEKLVL 226
Query: 385 ---GDCLLKSAGASSIAKYLTDNT--TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQIN 439
+ + + + L+ + + E +++ L+ ++
Sbjct: 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ-LETMD 285
Query: 440 VSENQFGEEGVEEMEKLMKSF 460
+S +EG + +
Sbjct: 286 ISAGVLTDEGARLLLDHVDKI 306
Score = 45.3 bits (106), Expect = 2e-05
Identities = 19/153 (12%), Positives = 48/153 (31%), Gaps = 15/153 (9%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
L+ V + L ++++ LS + L+ L + + +
Sbjct: 164 LSPVLDAMPLLNNLKIKGT-------NNLSIGKKPRPNLKSLEIISGGLPDSVVEDI--L 214
Query: 62 LSKLPSLAILNL---GDCLLKSAGASSIAKYLTDNT--TLEDVNLTCNEISVQGGLDLVK 116
S LP+L L L + + + + L+ + + E ++
Sbjct: 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE 274
Query: 117 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 149
+ L+ +++S +EG + +
Sbjct: 275 SDILPQ-LETMDISAGVLTDEGARLLLDHVDKI 306
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 67.8 bits (166), Expect = 2e-12
Identities = 75/445 (16%), Positives = 137/445 (30%), Gaps = 105/445 (23%)
Query: 27 ITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLG-----------------------QAL 62
I L +F + L+ L + T I A
Sbjct: 42 IAELNETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
+ L +L +L L C L A S + T+LE + L N I + N
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKK---IQPASFFLNMR 154
Query: 123 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAE 182
+ ++++ N+ S E
Sbjct: 155 RFHVLDLTFNKV-------------------------------------------KSICE 171
Query: 183 GDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGV 242
D N +S + + + + + + LDLS N F
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNE--YWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229
Query: 243 EGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 302
+ D + + ++ L L+N+ + D + K +K +
Sbjct: 230 KRFFDAIAGTK---IQSLILSNSYNMGSSFG--HTNFKDPDNFTFKGLEASGVKTCDLSK 284
Query: 303 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD-AFEENKNLRHLNLNDNTI 361
+++ +L +VF LE++ + QN I + D AF +L LNL+ N +
Sbjct: 285 SKI----FALLKSVFSHFTDLEQLTLAQN-----EINKIDDNAFWGLTHLLKLNLSQNFL 335
Query: 362 TYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQ 420
+I L L +L+L +++ G S L+++ L N++ SV
Sbjct: 336 G---SIDSR-MFENLDKLEVLDLSYNHIRALGDQS----FLGLPNLKELALDTNQLKSVP 387
Query: 421 GGLDLVKAMKNKTKLKQINVSENQF 445
G T L++I + N +
Sbjct: 388 DG-----IFDRLTSLQKIWLHTNPW 407
Score = 64.8 bits (158), Expect = 2e-11
Identities = 72/445 (16%), Positives = 131/445 (29%), Gaps = 112/445 (25%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
F +L+ L+ +++ Q G+ ++ F L L L+ N + G A
Sbjct: 47 ETSFSRLQDLQFLKVEQQTP---GLVIRNNTFRGLSSLIILKLDYNQFL---QLETG-AF 99
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
+ L +L +L L C L A S + T+LE + L N I + N
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKK---IQPASFFLNMR 154
Query: 123 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAE 182
+ ++++ N+ S E
Sbjct: 155 RFHVLDLTFNKV-------------------------------------------KSICE 171
Query: 183 GDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGV 242
D N +S + + + + + + LDLS N F
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNE--YWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229
Query: 243 EGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 302
+ D + + ++ L L+N+ +
Sbjct: 230 KRFFDAIAGTK---IQSLILSNSYNMGSSFG----------------------------- 257
Query: 303 NRLENEGAKMLAAVFKKLKT--LERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 360
FK L+ ++ ++ ++ I+ + F +L L L N
Sbjct: 258 ---HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL----KSVFSHFTDLEQLTLAQNE 310
Query: 361 ITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SV 419
I I A L L LNL L S + L LE ++L+ N I ++
Sbjct: 311 IN---KIDDN-AFWGLTHLLKLNLSQNFLGSIDSRMFEN-L---DKLEVLDLSYNHIRAL 362
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQ 444
+ LK++ + NQ
Sbjct: 363 GDQ-----SFLGLPNLKELALDTNQ 382
Score = 59.4 bits (144), Expect = 1e-09
Identities = 61/388 (15%), Positives = 116/388 (29%), Gaps = 83/388 (21%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
F L LE + + Q + ++ + F+ L L L DN I I
Sbjct: 96 TGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKK---IQPASFF 150
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS----VQGGLDLVKAM 118
+ +L+L +KS + + L+ + G +
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDL--LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208
Query: 119 KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEEND 178
T + +++S N F E + +
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAI-------------------------------- 236
Query: 179 SDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFG 238
+ + ++S+N S + N + L + + DLS +
Sbjct: 237 -----AGTKIQSLILSNSYNMG--SSFGHTNFKDPDNFTFKGL-EASGVKTCDLSKSKIF 288
Query: 239 PIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVF 298
+ + LE+L L N + K+ A L
Sbjct: 289 ALLKSVFSHFTD------LEQLTLAQNEI----NKIDDNAFWGLTH----------LLKL 328
Query: 299 IAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLND 358
+N L + + + +F+ L LE +++ N I +G +F NL+ L L+
Sbjct: 329 NLSQNFLGS----IDSRMFENLDKLEVLDLSYNHIRALG----DQSFLGLPNLKELALDT 380
Query: 359 NTITYKGAIPLGQALSKLPSLAILNLGD 386
N + ++P G +L SL + L
Sbjct: 381 NQLK---SVPDG-IFDRLTSLQKIWLHT 404
Score = 41.3 bits (97), Expect = 5e-04
Identities = 36/227 (15%), Positives = 70/227 (30%), Gaps = 34/227 (14%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
A + +DLS N+ + + L L+ LK+ G+ + +
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQ------DLQFLKVEQQTPGLV---IRNNTFRGLSS 80
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
L + N+ + F L LE + + Q + ++ +
Sbjct: 81 ----------LIILKLDYNQFLQ----LETGAFNGLANLEVLTLTQCNLDGAVLSG--NF 124
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404
F+ +L L L DN I I + +L+L +KS +
Sbjct: 125 FKPLTSLEMLVLRDNNIKK---IQPASFFLNMRRFHVLDLTFNKVKSICEEDL--LNFQG 179
Query: 405 TTLEDVNLTCNEIS----VQGGLDLVKAMKNKTKLKQINVSENQFGE 447
+ L+ + G + T + +++S N F E
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226
Score = 28.9 bits (65), Expect = 4.3
Identities = 14/104 (13%), Positives = 39/104 (37%), Gaps = 13/104 (12%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 409
++ +++L+ N+I + + S+L L L + ++ + L+ L
Sbjct: 31 HVNYVDLSLNSIA---ELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS---LII 83
Query: 410 VNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE 452
+ L N+ ++ G A L+ + +++ +
Sbjct: 84 LKLDYNQFLQLETG-----AFNGLANLEVLTLTQCNLDGAVLSG 122
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 1e-10
Identities = 63/440 (14%), Positives = 135/440 (30%), Gaps = 138/440 (31%)
Query: 77 LLKSAGASSIAKYLTDNTTLE-DVNLTCNEISVQGGLDLVKAMKNKTKLKQINV--SENQ 133
L S + K++ + L + + I + +M + ++Q + ++NQ
Sbjct: 70 TLLSKQEEMVQKFVEE--VLRINYKFLMSPIKTE---QRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 134 -FGEEGV---EEMEKLMKS------------FGMA-------AALVLEDDE--------- 161
F + V + KL ++ G+ A V +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 162 -----GECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQ 216
C+ E E + L + + + S+ S N + H+ +
Sbjct: 185 FWLNLKNCNSPETVLEMLQ-----------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 217 --SHMSLKTGAR--LVELDLSD----NAFGPIGV--------EGLADLLRSSCCFALEEL 260
+ K LV L++ + NAF + + + D L ++ +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAA---TTTHI 289
Query: 261 KLNNNGLGIT---GCKLLSKALHDCYESSKKE---GSPLALKVFIA----GRNRLEN--- 307
L+++ + +T LL K L + +E +P L + G +N
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 308 -EGAKMLAAVFKKLKTLERVEMPQNGIYH-VGITALSDAFEENKNLRHLNLNDNTITYKG 365
K+ + L LE E + + + + F + +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKM--FDRLSV------FPPSAH--------------- 386
Query: 366 AIPLGQALSKL-----PSLAILNLGDCLLKSAGASSIAKYLTDNT-TLEDVNLTCNEISV 419
IP LS + S ++ + S + K ++T ++ +
Sbjct: 387 -IPT-ILLSLIWFDVIKSDVMVVVNKLHKYSL----VEKQPKESTISIPSIY-------- 432
Query: 420 QGGLDLVKAMKNKTKL-KQI 438
L+L ++N+ L + I
Sbjct: 433 ---LELKVKLENEYALHRSI 449
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 61.3 bits (149), Expect = 3e-10
Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 42/222 (18%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
LDL N + + A LEEL+LN N + + A ++ +
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPH------LEELELNENIVS----AVEPGAFNNLF- 80
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
L+ NRL+ + VF L L ++++ +N I + L
Sbjct: 81 ---------NLRTLGLRSNRLKL----IPLGVFTGLSNLTKLDISENKIVIL----LDYM 123
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404
F++ NL+ L + DN + Y I A S L SL L L C L S + L+
Sbjct: 124 FQDLYNLKSLEVGDNDLVY---ISHR-AFSGLNSLEQLTLEKCNLTSIPTEA----LSHL 175
Query: 405 TTLEDVNLTCNEIS-VQGGLDLVKAMKNKTKLKQINVSENQF 445
L + L I+ ++ + K +LK + +S +
Sbjct: 176 HGLIVLRLRHLNINAIRDY-----SFKRLYRLKVLEISHWPY 212
Score = 48.9 bits (117), Expect = 2e-06
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 18/133 (13%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
VF L L +++ +N I + L F++ L+ L + DN + Y I A
Sbjct: 97 LGVFTGLSNLTKLDISENKIVIL----LDYMFQDLYNLKSLEVGDNDLVY---ISHR-AF 148
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS-VQGGLDLVKAMKNK 121
S L SL L L C L S + L+ L + L I+ ++ + K
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEA----LSHLHGLIVLRLRHLNINAIRDY-----SFKRL 199
Query: 122 TKLKQINVSENQF 134
+LK + +S +
Sbjct: 200 YRLKVLEISHWPY 212
Score = 46.6 bits (111), Expect = 1e-05
Identities = 35/203 (17%), Positives = 54/203 (26%), Gaps = 54/203 (26%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLS-----KALH 280
L +L L I E L+ L L L+L + + K L
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHG------LIVLRLRHLNINAIRDYSFKRLYRLKVLE 206
Query: 281 DCYESSKKEGSP-----LALKVFIAGRNRLEN--EGAKMLAAVFKKLKTLERVEMPQNGI 333
+ +P L L L A + L L + + N I
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA------VRHLVYLRFLNLSYNPI 260
Query: 334 YHVG-------------------ITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
+ + + AF LR LN++ N +T +
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT---TLEES-VF 316
Query: 374 SKLPSLAILNLG------DCLLK 390
+ +L L L DC L
Sbjct: 317 HSVGNLETLILDSNPLACDCRLL 339
Score = 45.9 bits (109), Expect = 2e-05
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 12/105 (11%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
F LE +E+ +N + V AF LR L L N + IPLG
Sbjct: 49 QDEFASFPHLEELELNENIVSAVE----PGAFNNLFNLRTLGLRSNRLK---LIPLG-VF 100
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 107
+ L +L L++ + + D L+ + + N++
Sbjct: 101 TGLSNLTKLDISENKIVILLDYM----FQDLYNLKSLEVGDNDLV 141
Score = 44.3 bits (105), Expect = 5e-05
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 18/133 (13%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
FK+L L+ +E+ + ++ L L++ +T A+P A+
Sbjct: 193 DYSFKRLYRLKVLEISHWPY----LDTMTPNCLYGLNLTSLSITHCNLT---AVPYL-AV 244
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNK 121
L L LNL + + S L + L+++ L ++ V+ A +
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSM----LHELLRLQEIQLVGGQLAVVEPY-----AFRGL 295
Query: 122 TKLKQINVSENQF 134
L+ +NVS NQ
Sbjct: 296 NYLRVLNVSGNQL 308
Score = 42.8 bits (101), Expect = 2e-04
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 22/136 (16%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
+ L + + + V A LR LNL+ N I+ I
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVP----YLAVRHLVYLRFLNLSYNPIST---IEGS-M 267
Query: 62 LSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAM 118
L +L L + L L A L +N++ N++ +++
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYA------FRGLNYLRVLNVSGNQLTTLEES-----VF 316
Query: 119 KNKTKLKQINVSENQF 134
+ L+ + + N
Sbjct: 317 HSVGNLETLILDSNPL 332
Score = 40.5 bits (95), Expect = 0.001
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
++ +L L+ +++ + V AF LR LN++ N +T +
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAVVE----PYAFRGLNYLRVLNVSGNQLT---TLEES-VF 316
Query: 63 SKLPSLAILNLG------DCLLK 79
+ +L L L DC L
Sbjct: 317 HSVGNLETLILDSNPLACDCRLL 339
Score = 35.1 bits (81), Expect = 0.047
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 18/112 (16%)
Query: 335 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 394
A+ + R L+L N I + + P L L L + ++
Sbjct: 20 RKRFVAVPEGI--PTETRLLDLGKNRIK---TLNQD-EFASFPHLEELELNENIV----- 68
Query: 395 SSI-AKYLTDNTTLEDVNLTCNEIS-VQGGLDLVKAMKNKTKLKQINVSENQ 444
S++ + L + L N + + G + L ++++SEN+
Sbjct: 69 SAVEPGAFNNLFNLRTLGLRSNRLKLIPLG-----VFTGLSNLTKLDISENK 115
Score = 33.5 bits (77), Expect = 0.13
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Query: 40 LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI-AKYLTDNTTLED 98
R L+L N I + + P L L L + ++ S++ + L
Sbjct: 34 TRLLDLGKNRIK---TLNQD-EFASFPHLEELELNENIV-----SAVEPGAFNNLFNLRT 84
Query: 99 VNLTCNEIS-VQGGLDLVKAMKNKTKLKQINVSENQ 133
+ L N + + G + L ++++SEN+
Sbjct: 85 LGLRSNRLKLIPLG-----VFTGLSNLTKLDISENK 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 2e-09
Identities = 83/444 (18%), Positives = 134/444 (30%), Gaps = 136/444 (30%)
Query: 12 LEHVEMPQNGIYHV----GITALSDAFEENKKLRHLNLNDNTITYKGAI-PL----GQAL 62
V + + G T D FEE LR L TY + L + L
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNT--DDYFEE---LRDLYQ-----TYHVLVGDLIKFSAETL 195
Query: 63 SKLPSLAI---------LNLGDCL-----------LKSAGAS-------SIAKYLTDNTT 95
S+L + LN+ + L L S S +A Y+ T
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV---T 252
Query: 96 LEDVNLTCNEI--SVQG----GLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 149
+ + T E+ ++G LV A+ S F + + L F
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAV-----AIAETDSWESFFVSVRKAITVL---F 304
Query: 150 --GMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNS------NLSHNDSNHSHNASN 201
G+ S E EN+ EG S NL+
Sbjct: 305 FIGVRCYEAY----PNTSLPPSILEDSLENN---EGVPSPMLSISNLTQEQV-------- 349
Query: 202 QSH-NNSNQSHNTSNQSHMSLKTGAR-LVELDLSDNAFG-PIGVEGLADLLRSSCC---- 254
Q + N +N Q +SL GA+ LV +S G P + GL LR +
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLV---VS----GPPQSLYGLNLTLRKAKAPSGL 402
Query: 255 ------FALEELKLNNNGLGITG---CKLLSKALHDCYESSKKE-----GSPLALKVF-- 298
F+ +LK +N L + LL A + K + + V+
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 299 IAGRNRLENEGAKMLAAVFKKLKTLERVEMP---QNGIYHV---------GITALSDAFE 346
G + L + + + V+ Q H+ G+ L+ +
Sbjct: 463 FDGSD-LRVLSGSISERIVDCI-IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK 520
Query: 347 ENKNLR-----HLNLNDNT-ITYK 364
+ +R L++N + +K
Sbjct: 521 DGTGVRVIVAGTLDINPDDDYGFK 544
Score = 57.4 bits (138), Expect = 8e-09
Identities = 47/259 (18%), Positives = 90/259 (34%), Gaps = 64/259 (24%)
Query: 246 ADL-LRSSCCFALEELKLNN-------NGLGITGCKLLSKALHDCYESSKKEGSPLALKV 297
AD + + F++ ++ +NN G G G ++ +E+ +G K+
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFG-GEKGKRIRENYSAMIFETIV-DGKLKTEKI 1706
Query: 298 FIAGRNRLEN---EGAK------------MLA---AVFKKLKTLERVEMPQNGIY--H-V 336
F + K + A F+ LK + +P + + H +
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK--SKGLIPADATFAGHSL 1764
Query: 337 G-ITAL---SDAFEENKNLRHLNLND--NTITYKG-----AIPLGQALSKLPSLAILNLG 385
G AL +D +++ + Y+G A+P + + +N G
Sbjct: 1765 GEYAALASLADV---------MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 386 DCLLKSAGAS--SIAKYLTDNTT--LEDVNLTC-NEISVQGG----LDLVKAMKNKTKLK 436
+ + + + + T +E VN N+ V G LD V + N KL+
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 437 QINVSE--NQFGEEGVEEM 453
+I++ E E VE
Sbjct: 1876 KIDIIELQKSLSLEEVEGH 1894
Score = 48.9 bits (116), Expect = 3e-06
Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 39/170 (22%)
Query: 1 MLA---AVFKKLKTLEHVEMPQNGIY--H-VG-ITAL-SDA----FEENKKLRHLNLNDN 48
+ A F+ LK +P + + H +G AL S A E ++
Sbjct: 1736 LTLMEKAAFEDLK--SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV-------- 1785
Query: 49 TITYKG-----AIPLGQALSKLPSLAILNLGDCLLKSAGAS--SIAKYLTDNTT--LEDV 99
+ Y+G A+P + + +N G + + + + + T +E V
Sbjct: 1786 -VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 100 NLTC-NEISVQGG----LDLVKAMKNKTKLKQINVSE--NQFGEEGVEEM 142
N N+ V G LD V + N KL++I++ E E VE
Sbjct: 1845 NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 46.6 bits (110), Expect = 2e-05
Identities = 38/236 (16%), Positives = 70/236 (29%), Gaps = 90/236 (38%)
Query: 281 DCYESSKKEGSPLALKVF-IAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG--IY--H 335
D Y++S A V+ A + + G +L V L + G I +
Sbjct: 1634 DLYKTS-----KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 336 VGIT--ALSDAFEENKNL-RHLNLNDNTITYKGAIPLG--------Q-ALSKLPSLAILN 383
+ + D + + + + +N + + T++ G Q AL+ L A
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS--EKGLLSATQFTQPALT-LMEKAAFE 1745
Query: 384 LGDCLLKS----------AGAS--------SIAKYLTDNTTLEDVNLTCNEISVQGGLDL 425
LKS AG S S+A ++ +E + +++
Sbjct: 1746 D----LKSKGLIPADATFAGHSLGEYAALASLADVMS----IESL------------VEV 1785
Query: 426 V----KAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA------ALVLEDD 471
V M + V E ++GM A A +
Sbjct: 1786 VFYRGMTM-----------------QVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Score = 42.7 bits (100), Expect = 3e-04
Identities = 43/265 (16%), Positives = 80/265 (30%), Gaps = 105/265 (39%)
Query: 32 DAFEENKKL-RHLNLNDNTITYKGAIPLG--------Q-ALSKLPSLAILNLGDCLLKS- 80
D + +K+ + +N + + T++ G Q AL+ L A LKS
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRS--EKGLLSATQFTQPALT-LMEKAAFED----LKSK 1750
Query: 81 ---------AGAS--------SIAKYLTDNTTLEDVNLTCNEISVQGGLDLV----KAMK 119
AG S S+A ++ +E + +++V M
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMS----IESL------------VEVVFYRGMTM- 1793
Query: 120 NKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDS 179
+ V E ++GM A + G + E + +
Sbjct: 1794 ----------------QVAVPRDELGRSNYGMIAI-----NPGRVAASFSQEALQYVVER 1832
Query: 180 DAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQ---SHMSLKTGARLVELDLSDNA 236
+ + N +N NQ Q + G L LD N
Sbjct: 1833 VGKRTGWLVE---------IVN--YNVENQ------QYVAA------G-DLRALDTVTNV 1868
Query: 237 FGPIGVEGLADLLRSSCCFALEELK 261
I ++ + D++ +LEE++
Sbjct: 1869 LNFIKLQKI-DIIELQKSLSLEEVE 1892
Score = 40.8 bits (95), Expect = 0.001
Identities = 55/327 (16%), Positives = 101/327 (30%), Gaps = 122/327 (37%)
Query: 3 AAVFKKLK-TLEHVEMPQNGIYHVGITALSD---AFEENKK----------LR------H 42
+ LK H + G+ A +D +F + + +R +
Sbjct: 261 GELRSYLKGATGHSQ----GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 43 LNLNDNTITYKGAIPLGQALSKLPS--LAILNLGDCLLKSAGASSIAKYLTDNTTL---E 97
+L + + + ++ + +PS L+I NL ++ + K N+ L +
Sbjct: 317 TSLPPSIL--EDSLENNE---GVPSPMLSISNLTQEQVQDY----VNK---TNSHLPAGK 364
Query: 98 DVNLTCNEIS---------VQG------GLDL-VKAMKNKTKLKQINV--SE------NQ 133
V EIS V G GL+L ++ K + L Q + SE N+
Sbjct: 365 QV-----EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 134 FGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDS 193
F L+ A+ L+ +D +N + + D
Sbjct: 420 FLPVASPFHSHLLVP---ASDLINKD---------------------LVKNNVSFNAKDI 455
Query: 194 N----HSHNASNQSHNNSNQSHN-----TSNQSHM--SLKTGARLVELDLSDNAFGPIGV 242
+ + S+ + + S + + A + LD FGP G
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI-LD-----FGPGGA 509
Query: 243 EGLADLLRSSCCFALEELKLNNNGLGI 269
GL L N +G G+
Sbjct: 510 SGLGVLTHR-----------NKDGTGV 525
Score = 35.4 bits (81), Expect = 0.051
Identities = 52/310 (16%), Positives = 85/310 (27%), Gaps = 109/310 (35%)
Query: 188 LSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGL-A 246
LSH H S ++Q Q + L D P L
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQ---EQFNKILPEPTE--GFAADDE---PTTPAELVG 62
Query: 247 DLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN--- 303
L + ++ + G ++L+ L +E+ ++ G +
Sbjct: 63 KFL----GYVSSLVEPSKVG---QFDQVLNLCL-TEFENC-----------YLEGNDIHA 103
Query: 304 ---RLENEGAKMLAAVFKKLKT--------------------LERVEMPQNGIYHV---- 336
+L E L + +K V + +
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 337 GITALSDAFEENKNLRHLNLNDNTITYKGAI-PL----GQALSKLPSLAI---------L 382
G T D FEE LR L TY + L + LS+L + L
Sbjct: 164 GNT--DDYFEE---LRDLYQ-----TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 383 NLGDCL-----------LKSAGAS-------SIAKYLTDNTTLEDVNLTCNEI--SVQG- 421
N+ + L L S S +A Y+ T + + T E+ ++G
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV---VTAKLLGFTPGELRSYLKGA 270
Query: 422 ---GLDLVKA 428
LV A
Sbjct: 271 TGHSQGLVTA 280
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 59.1 bits (143), Expect = 2e-09
Identities = 24/226 (10%), Positives = 67/226 (29%), Gaps = 31/226 (13%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 286
+ L S N + + ++ + + + + + N +G + S
Sbjct: 621 VEGLGFSHNKL-----KYIPNIFNAKSVYVMGSVDFSYNKIG---------SEGRNISCS 666
Query: 287 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQN---GIYHVGITALSD 343
+ + N ++ K +F + + + N I +
Sbjct: 667 MDDYKGINASTVTLSYNEIQ----KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
++ L ++L N +T + + LP L+ +++ SS +
Sbjct: 723 NYKNTYLLTTIDLRFNKLTS---LSDDFRATTLPYLSNMDVSYNCF-----SSFPTQPLN 774
Query: 404 NTTLEDVNLTCNEISVQGGL--DLVKAMKNKTKLKQINVSENQFGE 447
++ L+ + + + + L Q+ + N +
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820
Score = 54.5 bits (131), Expect = 5e-08
Identities = 57/432 (13%), Positives = 112/432 (25%), Gaps = 99/432 (22%)
Query: 2 LAAVFKKLKTLEHVEMPQNGI-----YHVGITALSDAFEENKKLRHLNLNDNTITYKGAI 56
L L L+ + + N T L+D + K++ + N +
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---EF 563
Query: 57 PLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 116
P +L K+ L +L+ ++ A N L D+ L N+I +
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRHLEA------FGTNVKLTDLKLDYNQIE---EIP-ED 613
Query: 117 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEE 176
+++ + S N+ + + F + V+
Sbjct: 614 FCAFTDQVEGLGFSHNKL--------KYIPNIFNAKSVYVMG------------------ 647
Query: 177 NDSDAEGDNSNLSHN--DSNHSHNASNQSHNNSNQ------SHNT-SNQSHMSLKTGARL 227
+ + S+N S + + + S+N TG+ +
Sbjct: 648 --------SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699
Query: 228 VELDLSDNAFGPIGVEGLADLLRS-SCCFALEELKLNNNGL-----GITGCKLLSKALHD 281
+ LS+N I L + + L + L N L L
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY----- 754
Query: 282 CYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG--IT 339
L N + L+ + +
Sbjct: 755 -------------LSNMDVSYNCFSS-----FPTQPLNSSQLKAFGIRHQRDAEGNRILR 796
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 399
+L L + N I + P L IL++ D S +S+
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIRK---VD----EKLTPQLYILDIADNPNISIDVTSVCP 849
Query: 400 YLTDNTTLEDVN 411
Y+ + +
Sbjct: 850 YIEAGMYVLLYD 861
Score = 51.8 bits (124), Expect = 3e-07
Identities = 40/291 (13%), Positives = 84/291 (28%), Gaps = 37/291 (12%)
Query: 184 DNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243
D N + ++ + + N + + +Q + L R+ L L+ +
Sbjct: 282 DGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD 341
Query: 244 GLADLLRSSCCFALEELKLNNNGL-----GITGCKLLSKALHDCYESSKKEGSPLALKVF 298
+ L L+ L + +L + + + L
Sbjct: 342 AIGQLTE------LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD 395
Query: 299 IAGR--NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNL 356
+ L++ + K + ++ Q G IT +S A + L+ +
Sbjct: 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYF 455
Query: 357 NDNTITY---------------KGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 401
++ TY K + S L L + L +C + + +L
Sbjct: 456 ANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM----TQLPDFL 511
Query: 402 TDNTTLEDVNLTCNEIS-----VQGGLDLVKAMKNKTKLKQINVSENQFGE 447
D L+ +N+ CN L K++ + N E
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562
Score = 50.3 bits (120), Expect = 1e-06
Identities = 68/420 (16%), Positives = 133/420 (31%), Gaps = 59/420 (14%)
Query: 33 AFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 92
+ N ++ L+L G +P A+ +L L +L+ G +G + LT
Sbjct: 318 DLDNNGRVTGLSLAGFGAK--GRVP--DAIGQLTELKVLSFGTHSETVSGRLFGDEELTP 373
Query: 93 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 152
+ + E + +L ++ ++ MK
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYD-------QRLNLSDLLQDAINR------NPEMKPIKKD 420
Query: 153 AALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNL-----SHNDSNHSHNASNQSHNNS 207
+ + L+D + S+ + L +++ + + A + NS
Sbjct: 421 SRISLKDTQIGNLTNRITFISKA------IQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474
Query: 208 NQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL 267
+ + N+ S L +++L + + L DL L+ L + N
Sbjct: 475 DYAKQYENEEL-SWSNLKDLTDVELYNCPNMTQLPDFLYDLPE------LQSLNIACNRG 527
Query: 268 -GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 326
K L D ++ K +++F G N LE A +A +K+ L +
Sbjct: 528 ISAAQLKADWTRLADDEDTGPK------IQIFYMGYNNLEEFPA---SASLQKMVKLGLL 578
Query: 327 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386
+ N + H+ +AF N L L L+ N I IP + + L
Sbjct: 579 DCVHNKVRHL------EAFGTNVKLTDLKLDYNQIE---EIP-EDFCAFTDQVEGLGFSH 628
Query: 387 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 445
LK + V+ + N+I S + + +S N+
Sbjct: 629 NKLKY---IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685
Score = 41.8 bits (98), Expect = 5e-04
Identities = 58/389 (14%), Positives = 108/389 (27%), Gaps = 96/389 (24%)
Query: 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALS 63
A +K+ L ++ N + H+ +AF N KL L L+ N I IP +
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHL------EAFGTNVKLTDLKLDYNQIE---EIP-EDFCA 616
Query: 64 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKT 122
+ L LK + V+ + N+I S +
Sbjct: 617 FTDQVEGLGFSHNKLKY---IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673
Query: 123 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL-VLEDDEGECSDEEQDEESEEENDSDA 181
+ +S N+ + E F + + +
Sbjct: 674 NASTVTLSYNEIQKFPTE-------LFATGSPISTI------------------------ 702
Query: 182 EGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIG 241
LS+N ++ N+ + K L +DL N
Sbjct: 703 -----ILSNN-------------LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL---- 740
Query: 242 VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 301
L+D R++ L + ++ N + +S + LK F
Sbjct: 741 -TSLSDDFRATTLPYLSNMDVSYNCF---------SSFPTQPLNSSQ------LKAFGIR 784
Query: 302 RNRL--ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
R N + +L ++++ N I V L L++ DN
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP-------QLYILDIADN 837
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCL 388
+I + + + + L D
Sbjct: 838 PNI---SIDVTSVCPYIEAGMYVLLYDKT 863
Score = 39.9 bits (93), Expect = 0.002
Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 24/131 (18%)
Query: 26 GITALSDAFEENKKLRHLNLNDNTITY---------------KGAIPLGQALSKLPSLAI 70
IT +S A + KL+ + ++ TY K + S L L
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495
Query: 71 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS-----VQGGLDLVKAMKNKTKLK 125
+ L +C + + +L D L+ +N+ CN L K++
Sbjct: 496 VELYNCPNM----TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551
Query: 126 QINVSENQFGE 136
+ N E
Sbjct: 552 IFYMGYNNLEE 562
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 58.3 bits (141), Expect = 3e-09
Identities = 57/457 (12%), Positives = 128/457 (28%), Gaps = 56/457 (12%)
Query: 4 AVFKKLKTLEHVEMPQNGIYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
L L + + N I +L F N+ L +L+++ N + I
Sbjct: 70 PDISFLSELRVLRLSHNRI-----RSLDFHVFLFNQDLEYLDVSHNRLQ---NISCC--- 118
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ--GGLDLVKAMKN 120
+ SL L+L LT L + L+ + + +
Sbjct: 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTK---LTFLGLSAAKFRQLDLLPVAHLHLSCI 174
Query: 121 KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSD 180
L ++ + + L F + ++ + + + ++
Sbjct: 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG-----HLQLSNIK 229
Query: 181 AEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKT--GARLVELDLSDNAFG 238
+N + + T S + + L++ +
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289
Query: 239 PIGVEGLADLLRSSCCFALEELKLNNNGLGI----TGCKLLSKALHDCYESSKK------ 288
++ +L + N + S
Sbjct: 290 ERIDREEFTYSETAL-KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348
Query: 289 EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEEN 348
SP + +N + LK L+ + + +NG+
Sbjct: 349 PPSPSSFTFLNFTQNVFT----DSVFQGCSTLKRLQTLILQRNGL-----KNFFKVALMT 399
Query: 349 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 408
KN+ L D ++ + + + S+ +LNL +L S+ + L ++
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML----TGSVFRCLPPK--VK 453
Query: 409 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
++L N I + K + + L+++NV+ NQ
Sbjct: 454 VLDLHNNRIM-----SIPKDVTHLQALQELNVASNQL 485
Score = 39.5 bits (92), Expect = 0.002
Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 16/134 (11%)
Query: 1 MLAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQ 60
+ LK L+ + + +NG+ K + L D ++ + +
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGL-----KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 120
+ S+ +LNL +L S+ + L ++ ++L N I + K + +
Sbjct: 423 TCAWAESILVLNLSSNML----TGSVFRCLPPK--VKVLDLHNNRIM-----SIPKDVTH 471
Query: 121 KTKLKQINVSENQF 134
L+++NV+ NQ
Sbjct: 472 LQALQELNVASNQL 485
Score = 38.3 bits (89), Expect = 0.005
Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 18/135 (13%)
Query: 315 AVFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
L L + + N I +L F N++L +L+++ N + I
Sbjct: 70 PDISFLSELRVLRLSHNRI-----RSLDFHVFLFNQDLEYLDVSHNRLQ---NISCC--- 118
Query: 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ--GGLDLVKAMKN 431
+ SL L+L LT L + L+ + + +
Sbjct: 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTK---LTFLGLSAAKFRQLDLLPVAHLHLSCI 174
Query: 432 KTKLKQINVSENQFG 446
L ++ +
Sbjct: 175 LLDLVSYHIKGGETE 189
Score = 32.2 bits (73), Expect = 0.46
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 19/98 (19%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 409
+ L+L+ N+I+ + + +S L L +L L ++S N LE
Sbjct: 53 RTKALSLSQNSISE---LRMP-DISFLSELRVLRLSHNRIRSLDFHVFLF----NQDLEY 104
Query: 410 VNLTCNEISV--QGGLDLVKAMKNKTKLKQINVSENQF 445
++++ N + + L+ +++S N F
Sbjct: 105 LDVSHNRLQNISCCPM---------ASLRHLDLSFNDF 133
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 55.5 bits (134), Expect = 2e-08
Identities = 47/222 (21%), Positives = 80/222 (36%), Gaps = 45/222 (20%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
+ L+L +N I + L LE L+L N + ++ A +
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHH------LEVLQLGRNSIR----QIEVGAFNGLA- 123
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
+L N L + + F+ L L + + N I + S A
Sbjct: 124 ---------SLNTLELFDNWLTV----IPSGAFEYLSKLRELWLRNNPIESIP----SYA 166
Query: 345 FEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
F +L L+L + + Y I G A L +L LNLG C +K LT
Sbjct: 167 FNRVPSLMRLDLGELKKLEY---ISEG-AFEGLFNLKYLNLGMCNIKDMPN------LTP 216
Query: 404 NTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 444
LE++ ++ N ++ G + + LK++ V +Q
Sbjct: 217 LVGLEELEMSGNHFPEIRPG-----SFHGLSSLKKLWVMNSQ 253
Score = 50.9 bits (122), Expect = 5e-07
Identities = 42/226 (18%), Positives = 71/226 (31%), Gaps = 53/226 (23%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L L+L DN I L + L EL L NN + + S A +
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSK------LRELWLRNNPIE----SIPSYAFNRVP-- 171
Query: 286 SKKEGSPLALKV-FIAGRNRLEN--EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 342
+L + +LE EGA F+ L L+ + + I +
Sbjct: 172 --------SLMRLDLGELKKLEYISEGA------FEGLFNLKYLNLGMCNIKDM------ 211
Query: 343 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKY 400
L L ++ N I G + L SL L + + + A
Sbjct: 212 PNLTPLVGLEELEMSGNHFPE---IRPG-SFHGLSSLKKLWVMNSQVSLIERNA------ 261
Query: 401 LTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 445
+L ++NL N + S+ L ++++ N +
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHD-----LFTPLRYLVELHLHHNPW 302
Score = 49.7 bits (119), Expect = 1e-06
Identities = 35/184 (19%), Positives = 59/184 (32%), Gaps = 41/184 (22%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN------------GLGITGCK 273
+L EL L +N I + L L L GL
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPS------LMRLDLGELKKLEYISEGAFEGLF----N 197
Query: 274 LLSKALHDCYESSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 332
L L C +PL L+ N + F L +L+++ + +
Sbjct: 198 LKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE----IRPGSFHGLSSLKKLWVMNSQ 253
Query: 333 IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG------D 386
+ + +AF+ +L LNL N ++ ++P + L L L+L D
Sbjct: 254 VSLIE----RNAFDGLASLVELNLAHNNLS---SLPHD-LFTPLRYLVELHLHHNPWNCD 305
Query: 387 CLLK 390
C +
Sbjct: 306 CDIL 309
Score = 44.4 bits (105), Expect = 6e-05
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
F+ L LE +++ +N I + AF L L L DN +T IP G A L
Sbjct: 95 FRHLHHLEVLQLGRNSIRQIE----VGAFNGLASLNTLELFDNWLTV---IPSG-AFEYL 146
Query: 66 PSLAILNLGDCLLKS 80
L L L + ++S
Sbjct: 147 SKLRELWLRNNPIES 161
Score = 42.8 bits (101), Expect = 2e-04
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F L +L+ + + + + + +AF+ L LNL N ++ ++P +
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIE----RNAFDGLASLVELNLAHNNLS---SLPHD-LFTP 288
Query: 65 LPSLAILNLG------DCLLK 79
L L L+L DC +
Sbjct: 289 LRYLVELHLHHNPWNCDCDIL 309
Score = 42.8 bits (101), Expect = 2e-04
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 19/131 (14%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F L +L +E+ N + + S AFE KLR L L +N I +IP A ++
Sbjct: 118 AFNGLASLNTLELFDNWLTVIP----SGAFEYLSKLRELWLRNNPIE---SIPSY-AFNR 169
Query: 65 LPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTK 123
+PSL L+LG+ L+ + L+ +NL I + +
Sbjct: 170 VPSLMRLDLGELKKLEYISEGA----FEGLFNLKYLNLGMCNIKD------MPNLTPLVG 219
Query: 124 LKQINVSENQF 134
L+++ +S N F
Sbjct: 220 LEELEMSGNHF 230
Score = 42.4 bits (100), Expect = 2e-04
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L LE +EM N + +F L+ L + ++ ++ I A L
Sbjct: 214 LTPLVGLEELEMSGNHFPEIR----PGSFHGLSSLKKLWVMNSQVSL---IERN-AFDGL 265
Query: 66 PSLAILNLGDCLLKS 80
SL LNL L S
Sbjct: 266 ASLVELNLAHNNLSS 280
Score = 40.1 bits (94), Expect = 0.001
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 13/84 (15%)
Query: 27 ITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGA 83
I + +D F L L L N+I I +G A + L SL L L D L +GA
Sbjct: 87 IQMIQADTFRHLHHLEVLQLGRNSIRQ---IEVG-AFNGLASLNTLELFDNWLTVIPSGA 142
Query: 84 SSIAKYLTDNTTLEDVNLTCNEIS 107
+ L ++ L N I
Sbjct: 143 ------FEYLSKLRELWLRNNPIE 160
Score = 35.9 bits (83), Expect = 0.025
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 18/99 (18%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTL 407
N R+LNL +N I I L L +L LG ++ GA +L
Sbjct: 76 NTRYLNLMENNIQ---MIQ-ADTFRHLHHLEVLQLGRNSIRQIEVGA------FNGLASL 125
Query: 408 EDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ L N + + G A + +KL+++ + N
Sbjct: 126 NTLELFDNWLTVIPSG-----AFEYLSKLRELWLRNNPI 159
Score = 34.7 bits (80), Expect = 0.062
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 18/98 (18%)
Query: 40 LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLE 97
R+LNL +N I I L L +L LG ++ GA +L
Sbjct: 77 TRYLNLMENNIQ---MIQ-ADTFRHLHHLEVLQLGRNSIRQIEVGA------FNGLASLN 126
Query: 98 DVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 134
+ L N + + G A + +KL+++ + N
Sbjct: 127 TLELFDNWLTVIPSG-----AFEYLSKLRELWLRNNPI 159
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 54.2 bits (131), Expect = 2e-08
Identities = 44/225 (19%), Positives = 72/225 (32%), Gaps = 49/225 (21%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L L L N I L LE+L L++N + + H
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLAL------LEQLDLSDNAQ-LR--SVDPATFHGLG-- 105
Query: 286 SKKEGSPLALKVFIAGRNRLEN--EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
L R L+ G F+ L L+ + + N + + D
Sbjct: 106 --------RLHTLHLDRCGLQELGPGL------FRGLAALQYLYLQDNALQALP----DD 147
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYL 401
F + NL HL L+ N I+ +P A L SL L L + A
Sbjct: 148 TFRDLGNLTHLFLHGNRISS---VPER-AFRGLHSLDRLLLHQNRVAHVHPHA------F 197
Query: 402 TDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 445
D L + L N + ++ A+ L+ + +++N +
Sbjct: 198 RDLGRLMTLYLFANNLSALPTE-----ALAPLRALQYLRLNDNPW 237
Score = 47.7 bits (114), Expect = 4e-06
Identities = 38/224 (16%), Positives = 69/224 (30%), Gaps = 47/224 (20%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
A + L N + L L L++N L ++ + A
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRN------LTILWLHSNVLA----RIDAAAFTGLA- 80
Query: 285 SSKKEGSPLALKVFIAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
L+ N +L + + A F L L + + + G+ +G
Sbjct: 81 ---------LLEQLDLSDNAQLRS----VDPATFHGLGRLHTLHLDRCGLQELG----PG 123
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYL 401
F L++L L DN + +P L +L L L + S A
Sbjct: 124 LFRGLAALQYLYLQDNALQA---LPDD-TFRDLGNLTHLFLHGNRISSVPERA------F 173
Query: 402 TDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 444
+L+ + L N + V A ++ +L + + N
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPH-----AFRDLGRLMTLYLFANN 212
Score = 45.4 bits (108), Expect = 2e-05
Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 22/134 (16%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
A F L L + + + G+ +G F L++L L DN + +P
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELG----PGLFRGLAALQYLYLQDNALQA---LPDD-TF 149
Query: 63 SKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMK 119
L +L L L + S A +L+ + L N + V A +
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERA------FRGLHSLDRLLLHQNRVAHVHPH-----AFR 198
Query: 120 NKTKLKQINVSENQ 133
+ +L + + N
Sbjct: 199 DLGRLMTLYLFANN 212
Score = 42.7 bits (101), Expect = 2e-04
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F+ L +L+ + + QN + HV AF + +L L L N ++ A+P AL+
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVH----PHAFRDLGRLMTLYLFANNLS---ALPTE-ALAP 223
Query: 65 LPSLAILNLGD 75
L +L L L D
Sbjct: 224 LRALQYLRLND 234
Score = 36.1 bits (84), Expect = 0.018
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 16/110 (14%)
Query: 27 ITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD-CLLKSAGAS 84
I+ + + +F + L L L+ N + I A + L L L+L D L+S +
Sbjct: 44 ISHVPAASFRACRNLTILWLHSNVLAR---IDAA-AFTGLALLEQLDLSDNAQLRSVDPA 99
Query: 85 SIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 133
+ L ++L + + G + L+ + + +N
Sbjct: 100 T----FHGLGRLHTLHLDRCGLQELGPG-----LFRGLAALQYLYLQDNA 140
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 55.0 bits (133), Expect = 3e-08
Identities = 75/442 (16%), Positives = 139/442 (31%), Gaps = 120/442 (27%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L + + + + + ++ L + I +I + L
Sbjct: 20 DTALAEKMKTVLGKTNVTDT------VSQTDLDQVTTLQADRLGIK---SID---GVEYL 67
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L +N + L L + T L D+ + N+I+ + + N T L
Sbjct: 68 NNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIAD------ITPLANLTNLT 115
Query: 126 QINVSENQFGE-EGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGD 184
+ + NQ + + ++ + L + L L
Sbjct: 116 GLTLFNNQITDIDPLKNLTNLNR-------LEL--------------------------- 141
Query: 185 NSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244
+SN + S S S Q + NQ + ++++ L LD+S N +
Sbjct: 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLT-----TLERLDISSNKV--SDISV 194
Query: 245 LADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303
LA L LE L NN + IT +L+ L N
Sbjct: 195 LAKLTN------LESLIATNNQISDITPLGILTN-----------------LDELSLNGN 231
Query: 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITY 363
+L++ G L L +++ N I ++ L L L N I+
Sbjct: 232 QLKDIGT------LASLTNLTDLDLANNQISNL------APLSGLTKLTELKLGANQISN 279
Query: 364 KGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGL 423
I L+ L +L L L + L+ +++ L + L N IS +
Sbjct: 280 ---IS---PLAGLTALTNLELNENQLED------ISPISNLKNLTYLTLYFNNISDISPV 327
Query: 424 DLVKAMKNKTKLKQINVSENQF 445
+ TKL+++ N+
Sbjct: 328 ------SSLTKLQRLFFYNNKV 343
Score = 53.0 bits (128), Expect = 1e-07
Identities = 82/420 (19%), Positives = 139/420 (33%), Gaps = 100/420 (23%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L L + + N I + D + L L L+ NTI+ I ALS L
Sbjct: 108 LANLTNLTGLTLFNNQITDI------DPLKNLTNLNRLELSSNTISD---IS---ALSGL 155
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
SL L+ G+ + L + TTLE ++++ N++S + + T L+
Sbjct: 156 TSLQQLSFGNQVTDLKP-------LANLTTLERLDISSNKVSD------ISVLAKLTNLE 202
Query: 126 QINVSENQF-GEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGD 184
+ + NQ + + L + L L ++ + D
Sbjct: 203 SLIATNNQISDITPLGILTNLDE-------LSLNGNQLK--------------DIGTLAS 241
Query: 185 NSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244
+NL+ D + NQ N + S T L EL L N +
Sbjct: 242 LTNLTDLDLAN-----NQISNLAPLSGLTK------------LTELKLGANQI--SNISP 282
Query: 245 LADLLRSSCCFALEELKLNNNGL----GITGCKLLSK-ALHDCYESSKKEGSPL-ALKVF 298
LA L L L+LN N L I+ K L+ L+ S S L L+
Sbjct: 283 LAGLTA------LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 336
Query: 299 IAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLND 358
N++ + + L + + N I + + L LND
Sbjct: 337 FFYNNKVSD------VSSLANLTNINWLSAGHNQISDL------TPLANLTRITQLGLND 384
Query: 359 NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 418
T ++ +++I N + GA ++D + + ++T N S
Sbjct: 385 QAWT-------NAPVNYKANVSIPNT---VKNVTGALIAPATISDGGSYTEPDITWNLPS 434
Score = 47.3 bits (113), Expect = 7e-06
Identities = 43/231 (18%), Positives = 76/231 (32%), Gaps = 56/231 (24%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 285
L EL L+ N + LA L L +L L NN + + L+K
Sbjct: 223 LDELSLNGNQL--KDIGTLASLTN------LTDLDLANNQISNLAPLSGLTK-------- 266
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L G N++ N L L +E+ +N + +
Sbjct: 267 ---------LTELKLGANQISNISP------LAGLTALTNLELNENQLEDI------SPI 305
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
KNL +L L N I+ +S L L L + + L + T
Sbjct: 306 SNLKNLTYLTLYFNNISDI------SPVSSLTKLQRLFFYNNKVSDV------SSLANLT 353
Query: 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456
+ ++ N+IS + + N T++ Q+ +++ + V +
Sbjct: 354 NINWLSAGHNQISD------LTPLANLTRITQLGLNDQAWTNAPVNYKANV 398
Score = 46.1 bits (110), Expect = 1e-05
Identities = 48/253 (18%), Positives = 87/253 (34%), Gaps = 63/253 (24%)
Query: 206 NSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 265
+T +Q+ + ++ L G+ + L ++ +NN
Sbjct: 32 GKTNVTDTVSQTDLD-----QVTTLQADRL--------GIKSIDGVEYLNNLTQINFSNN 78
Query: 266 GL-GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLE 324
L IT K L+K L + N++ + L L
Sbjct: 79 QLTDITPLKNLTK-----------------LVDILMNNNQIADITP------LANLTNLT 115
Query: 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384
+ + N I + D + NL L L+ NTI+ I ALS L SL L+
Sbjct: 116 GLTLFNNQITDI------DPLKNLTNLNRLELSSNTISD---IS---ALSGLTSLQQLSF 163
Query: 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444
G+ + L + TTLE ++++ N++S + + T L+ + + NQ
Sbjct: 164 GNQVTDLKP-------LANLTTLERLDISSNKVSD------ISVLAKLTNLESLIATNNQ 210
Query: 445 F-GEEGVEEMEKL 456
+ + L
Sbjct: 211 ISDITPLGILTNL 223
Score = 46.1 bits (110), Expect = 2e-05
Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 44/236 (18%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSK----ALHDC 282
L L+LS N + L+ L L++L N + L+ +
Sbjct: 136 LNRLELSSNTIS--DISALSGLTS------LQQLSFGNQVTDLKPLANLTTLERLDISSN 187
Query: 283 YESSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL 341
S + L L+ IA N++ + L L+ + + N + +
Sbjct: 188 KVSDISVLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDI----- 236
Query: 342 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 401
NL L+L +N I+ + LS L L L LG + + L
Sbjct: 237 -GTLASLTNLTDLDLANNQIS---NLA---PLSGLTKLTELKLGANQISNISP------L 283
Query: 402 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF-GEEGVEEMEKL 456
T L ++ L N++ + + N L + + N V + KL
Sbjct: 284 AGLTALTNLELNENQLED------ISPISNLKNLTYLTLYFNNISDISPVSSLTKL 333
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 53.1 bits (128), Expect = 6e-08
Identities = 52/260 (20%), Positives = 78/260 (30%), Gaps = 73/260 (28%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L L L +N I A L LE L L+ N L
Sbjct: 77 NLHTLILINNKISKISPGAFAPL------VKLERLYLSKNQL-----------------K 113
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
E P L+ N + K+ +VF L + VE+ N + GI + AF
Sbjct: 114 ELPEKMPKTLQELRVHENEIT----KVRKSVFNGLNQMIVVELGTNPLKSSGIE--NGAF 167
Query: 346 EENKNLRHLNLNDNTITYKGAIPLG--------------------QALSKLPSLAILNLG 385
+ K L ++ + D IT IP G +L L +LA L L
Sbjct: 168 QGMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 386 DCLLKS--AGA-----------------SSIAKYLTDNTTLEDVNLTCNEISV--QGGLD 424
+ + G+ + L D+ ++ V L N IS
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Query: 425 LVKAMKNKTKLKQINVSENQ 444
K +++ N
Sbjct: 285 PPGYNTKKASYSGVSLFSNP 304
Score = 44.2 bits (105), Expect = 5e-05
Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 29/164 (17%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
L EL L N + L L L +L L+ N + + + +L +
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGL------NNLAKLGLSFNSIS----AVDNGSLANTP- 240
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL--S 342
L+ N+L + K ++ V + N I +G
Sbjct: 241 ---------HLRELHLNNNKL-----VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286
Query: 343 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386
+ + ++L N + Y I + A + LG+
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWE-IQPS-TFRCVYVRAAVQLGN 328
Score = 43.8 bits (104), Expect = 7e-05
Identities = 35/172 (20%), Positives = 56/172 (32%), Gaps = 46/172 (26%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLG--- 59
+VF L + VE+ N + GI + AF+ KKL ++ + D IT IP G
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIE--NGAFQGMKKLSYIRIADTNITT---IPQGLPP 192
Query: 60 -----------------QALSKLPSLAILNLGDCLLKS--AGA----------------- 83
+L L +LA L L + + G+
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 84 SSIAKYLTDNTTLEDVNLTCNEISV--QGGLDLVKAMKNKTKLKQINVSENQ 133
+ L D+ ++ V L N IS K +++ N
Sbjct: 253 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304
Score = 43.5 bits (103), Expect = 1e-04
Identities = 41/222 (18%), Positives = 77/222 (34%), Gaps = 48/222 (21%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
LDL +N I +L L L L NN + K+ A
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKN------LHTLILINNKIS----KISPGAFAPLV- 100
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS-D 343
L+ +N+L+ ++ + K L+ L ++ IT +
Sbjct: 101 ---------KLERLYLSKNQLK----ELPEKMPKTLQELR--------VHENEITKVRKS 139
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
F + + L N + G I G A + L+ + + D + ++I + L
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSG-IENG-AFQGMKKLSYIRIADTNI-----TTIPQGLPP 192
Query: 404 NTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 444
+ L +++L N+I V ++K L ++ +S N
Sbjct: 193 S--LTELHLDGNKITKVDAA-----SLKGLNNLAKLGLSFNS 227
Score = 38.8 bits (91), Expect = 0.002
Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 19/132 (14%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
FK LK L + + N I + AF KL L L+ N + +P
Sbjct: 69 DGDFKNLKNLHTLILINNKISKIS----PGAFAPLVKLERLYLSKNQLK---ELPEKM-- 119
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDVNLTCNEISVQGGLDLVKAMKNK 121
+L L + + + + + K + + + V L N + G++ A +
Sbjct: 120 --PKTLQELRVHENEI-----TKVRKSVFNGLNQMIVVELGTNPLKS-SGIE-NGAFQGM 170
Query: 122 TKLKQINVSENQ 133
KL I +++
Sbjct: 171 KKLSYIRIADTN 182
Score = 37.3 bits (87), Expect = 0.009
Identities = 25/136 (18%), Positives = 39/136 (28%), Gaps = 25/136 (18%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L +L LS N+ + LA+ L EL LNNN L + L D
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPH------LRELHLNNNKL-----VKVPGGLADH--- 262
Query: 286 SKKEGSPLALKVFIAGRNRLEN--EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
++V N + K + V + N + + I
Sbjct: 263 -------KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP--S 313
Query: 344 AFEENKNLRHLNLNDN 359
F + L +
Sbjct: 314 TFRCVYVRAAVQLGNY 329
Score = 36.9 bits (86), Expect = 0.009
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 4 AVFKKLKTLEHVEMPQNGIYHVGITAL--SDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
K ++ V + N I +G + ++L N + Y I
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE-IQPS-T 314
Query: 62 LSKLPSLAILNLGD 75
+ A + LG+
Sbjct: 315 FRCVYVRAAVQLGN 328
Score = 32.7 bits (75), Expect = 0.25
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 27/120 (22%)
Query: 40 LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK-------YLTD 92
L+L +N IT I G L +L L L + + + A YL+
Sbjct: 54 TALLDLQNNKIT---EIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109
Query: 93 N----------TTLEDVNLTCNEIS-VQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE 141
N TL+++ + NEI+ V+ ++ + + N G+E
Sbjct: 110 NQLKELPEKMPKTLQELRVHENEITKVRKS-----VFNGLNQMIVVELGTNPLKSSGIEN 164
Score = 28.4 bits (64), Expect = 5.0
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 2/44 (4%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDN 48
K + V + N + + I F + L +
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQP--STFRCVYVRAAVQLGNY 329
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 53.6 bits (129), Expect = 7e-08
Identities = 47/222 (21%), Positives = 83/222 (37%), Gaps = 45/222 (20%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
L+L +N I V L LE L+L+ N + + A +
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRH------LEILQLSRNHIR----TIEIGAFNGLA- 112
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
L NRL + F L L+ + + N I + S A
Sbjct: 113 ---------NLNTLELFDNRLTT----IPNGAFVYLSKLKELWLRNNPIESIP----SYA 155
Query: 345 FEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
F +LR L+L + ++Y I G A L +L LNL C L+ LT
Sbjct: 156 FNRIPSLRRLDLGELKRLSY---ISEG-AFEGLSNLRYLNLAMCNLREIPN------LTP 205
Query: 404 NTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 444
L++++L+ N + +++ G + + L+++ + ++Q
Sbjct: 206 LIKLDELDLSGNHLSAIRPG-----SFQGLMHLQKLWMIQSQ 242
Score = 46.7 bits (111), Expect = 1e-05
Identities = 33/173 (19%), Positives = 54/173 (31%), Gaps = 43/173 (24%)
Query: 226 RLVELDLSD-NAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
L LDL + I L L L L L
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGL------SNLRYLNLAMCNL----------------- 197
Query: 285 SSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
+PL L N L + F+ L L+++ M Q+ I + +
Sbjct: 198 REIPNLTPLIKLDELDLSGNHLSA----IRPGSFQGLMHLQKLWMIQSQIQVIE----RN 249
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG------DCLLK 390
AF+ ++L +NL N +T +P + L L ++L +C +
Sbjct: 250 AFDNLQSLVEINLAHNNLT---LLPHD-LFTPLHHLERIHLHHNPWNCNCDIL 298
Score = 44.4 bits (105), Expect = 6e-05
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 19/133 (14%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
F L L +E+ N + + + AF L+ L L +N I +IP A
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIP----NGAFVYLSKLKELWLRNNPIE---SIPSY-AF 156
Query: 374 SKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK 432
+++PSL L+LG+ L + + L +NL + + +
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGA----FEGLSNLRYLNLAMCNLRE------IPNLTPL 206
Query: 433 TKLKQINVSENQF 445
KL ++++S N
Sbjct: 207 IKLDELDLSGNHL 219
Score = 44.0 bits (104), Expect = 8e-05
Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 19/133 (14%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
F L L +E+ N + + + AF KL+ L L +N I +IP A
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIP----NGAFVYLSKLKELWLRNNPIE---SIPSY-AF 156
Query: 63 SKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK 121
+++PSL L+LG+ L + + L +NL + + +
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGA----FEGLSNLRYLNLAMCNLRE------IPNLTPL 206
Query: 122 TKLKQINVSENQF 134
KL ++++S N
Sbjct: 207 IKLDELDLSGNHL 219
Score = 42.4 bits (100), Expect = 2e-04
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F+ L L+ + M Q+ I + +AF+ + L +NL N +T +P +
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIE----RNAFDNLQSLVEINLAHNNLT---LLPHD-LFTP 277
Query: 65 LPSLAILNLG------DCLLK 79
L L ++L +C +
Sbjct: 278 LHHLERIHLHHNPWNCNCDIL 298
Score = 41.3 bits (97), Expect = 6e-04
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 12/99 (12%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L L+ +++ N + + +F+ L+ L + + I I A L
Sbjct: 203 LTPLIKLDELDLSGNHLSAIR----PGSFQGLMHLQKLWMIQSQIQV---IERN-AFDNL 254
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 104
SL +NL L T LE ++L N
Sbjct: 255 QSLVEINLAHNNLTLLPHDL----FTPLHHLERIHLHHN 289
Score = 40.9 bits (96), Expect = 7e-04
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 24/131 (18%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F+ L L ++ + + + KL L+L+ N ++ I G +
Sbjct: 180 AFEGLSNLRYLNLAMCNLREI------PNLTPLIKLDELDLSGNHLSA---IRPG-SFQG 229
Query: 65 LPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNK 121
L L L + ++ A + +L ++NL N + +
Sbjct: 230 LMHLQKLWMIQSQIQVIERNA------FDNLQSLVEINLAHNNLTLLPHD-----LFTPL 278
Query: 122 TKLKQINVSEN 132
L++I++ N
Sbjct: 279 HHLERIHLHHN 289
Score = 35.5 bits (82), Expect = 0.031
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 18/99 (18%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTL 407
N R LNL++N I I + + L L IL L +++ GA L
Sbjct: 65 NTRLLNLHENQIQ---IIKVN-SFKHLRHLEILQLSRNHIRTIEIGA------FNGLANL 114
Query: 408 EDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ L N + ++ G A +KLK++ + N
Sbjct: 115 NTLELFDNRLTTIPNG-----AFVYLSKLKELWLRNNPI 148
Score = 34.3 bits (79), Expect = 0.079
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 40 LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLE 97
R LNL++N I I + + L L IL L +++ GA L
Sbjct: 66 TRLLNLHENQIQ---IIKVN-SFKHLRHLEILQLSRNHIRTIEIGA------FNGLANLN 115
Query: 98 DVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 134
+ L N + ++ G A +KLK++ + N
Sbjct: 116 TLELFDNRLTTIPNG-----AFVYLSKLKELWLRNNPI 148
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 53.6 bits (128), Expect = 9e-08
Identities = 42/241 (17%), Positives = 83/241 (34%), Gaps = 50/241 (20%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSKALH 280
A ++ +L + D + + +++++ NN+ + GI + L
Sbjct: 21 AETIKDNLKKK--------SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV-TKL- 70
Query: 281 DCYESSKKEGSPLA----LKVFIAGRNRLEN-EGAKMLAAVFKKLKTLERVEMPQNGIYH 335
+ + PL L N++++ K LK L+ + + NGI
Sbjct: 71 FLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS-------LKDLKKLKSLSLEHNGISD 123
Query: 336 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 395
+ + L L L +N IT LS+L L L+L D +
Sbjct: 124 I------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP- 170
Query: 396 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 455
L T L+++ L+ N IS ++A+ L + + + + +
Sbjct: 171 -----LAGLTKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECLNKPINHQSN 219
Query: 456 L 456
L
Sbjct: 220 L 220
Score = 48.2 bits (114), Expect = 4e-06
Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 24/140 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
K LK L+ + + NGI + + +L L L +N IT LS+L
Sbjct: 105 LKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRL 152
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
L L+L D + L T L+++ L+ N IS ++A+ L
Sbjct: 153 TKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISD------LRALAGLKNLD 200
Query: 126 QINVSENQFGEEGVEEMEKL 145
+ + + + + L
Sbjct: 201 VLELFSQECLNKPINHQSNL 220
Score = 44.7 bits (105), Expect = 6e-05
Identities = 41/251 (16%), Positives = 75/251 (29%), Gaps = 53/251 (21%)
Query: 206 NSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 265
+ Q+ ++ + ++ +++ + +G+ L + +L LN N
Sbjct: 29 KKKSVTDAVTQNELN-----SIDQIIANNSDIKSV--QGIQYLPN------VTKLFLNGN 75
Query: 266 GL----GITGCKLLSKALHDCYESSKKEGSPLA----LKVFIAGRNRLEN-EGAKMLAAV 316
L +T K L E+ K+ S L LK N + + G
Sbjct: 76 KLTDIKPLTNLKNLGWL--FLDENKIKDLSSLKDLKKLKSLSLEHNGISDING------- 126
Query: 317 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 376
L LE + + N I + L L+L DN I+ I L+ L
Sbjct: 127 LVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISD---IV---PLAGL 174
Query: 377 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 436
L L L + + L L+ + L E + N
Sbjct: 175 TKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECL----NKPINHQSNLVVPN 224
Query: 437 QINVSENQFGE 447
+ ++
Sbjct: 225 TVKNTDGSLVT 235
Score = 43.6 bits (102), Expect = 1e-04
Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 24/128 (18%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+L +++ + + I V + + L LN N +T I + L+ L
Sbjct: 39 QNELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLT---DI---KPLTNL 86
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L L L + +K + L D L+ ++L N IS + + + +L+
Sbjct: 87 KNLGWLFLDENKIKDLSS------LKDLKKLKSLSLEHNGISD------INGLVHLPQLE 134
Query: 126 QINVSENQ 133
+ + N+
Sbjct: 135 SLYLGNNK 142
Score = 38.9 bits (90), Expect = 0.003
Identities = 23/131 (17%), Positives = 37/131 (28%), Gaps = 22/131 (16%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L LE + + N I + KL L+L DN I+ I L+ L
Sbjct: 127 LVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISD---IV---PLAGL 174
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
L L L + + L L+ + L E + N
Sbjct: 175 TKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECL----NKPINHQSNLVVPN 224
Query: 126 QINVSENQFGE 136
+ ++
Sbjct: 225 TVKNTDGSLVT 235
Score = 34.3 bits (78), Expect = 0.083
Identities = 16/109 (14%), Positives = 42/109 (38%), Gaps = 19/109 (17%)
Query: 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 97
+ NL ++T ++L S+ + + +KS + +
Sbjct: 21 AETIKDNLKKKSVT---DAV---TQNELNSIDQIIANNSDIKSVQG------IQYLPNVT 68
Query: 98 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE-EGVEEMEKL 145
+ L N+++ +K + N L + + EN+ + +++++KL
Sbjct: 69 KLFLNGNKLTD------IKPLTNLKNLGWLFLDENKIKDLSSLKDLKKL 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 50.1 bits (120), Expect = 5e-07
Identities = 44/240 (18%), Positives = 86/240 (35%), Gaps = 48/240 (20%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSKALH 280
A ++ +L + D + + +++++ NN+ + GI + L
Sbjct: 24 AETIKDNLKKK--------SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV-TKL- 73
Query: 281 DCYESSKKEGSPLA----LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 336
+ + PLA L N++++ + K LK L+ + + NGI +
Sbjct: 74 FLNGNKLTDIKPLANLKNLGWLFLDENKVKD------LSSLKDLKKLKSLSLEHNGISDI 127
Query: 337 GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396
+ L L L +N IT I LS+L L L+L D +
Sbjct: 128 ------NGLVHLPQLESLYLGNNKIT---DI---TVLSRLTKLDTLSLEDNQISDIVP-- 173
Query: 397 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456
L T L+++ L+ N IS ++A+ L + + + + + L
Sbjct: 174 ----LAGLTKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECLNKPINHQSNL 223
Score = 46.2 bits (110), Expect = 1e-05
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 24/140 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
K LK L+ + + NGI + + +L L L +N IT I LS+L
Sbjct: 108 LKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKIT---DI---TVLSRL 155
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
L L+L D + L T L+++ L+ N IS ++A+ L
Sbjct: 156 TKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISD------LRALAGLKNLD 203
Query: 126 QINVSENQFGEEGVEEMEKL 145
+ + + + + L
Sbjct: 204 VLELFSQECLNKPINHQSNL 223
Score = 40.0 bits (94), Expect = 9e-04
Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 24/128 (18%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+L +++ + + I V + + L LN N +T + L+ L
Sbjct: 42 QNELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTD------IKPLANL 89
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L L L + +K + L D L+ ++L N IS + + + +L+
Sbjct: 90 KNLGWLFLDENKVKDLSS------LKDLKKLKSLSLEHNGISD------INGLVHLPQLE 137
Query: 126 QINVSENQ 133
+ + N+
Sbjct: 138 SLYLGNNK 145
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 50.2 bits (121), Expect = 6e-07
Identities = 39/219 (17%), Positives = 74/219 (33%), Gaps = 54/219 (24%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 285
L L L+ N + LA L +L N + IT +++
Sbjct: 179 LYSLSLNYNQIE--DISPLASLT------SLHYFTAYVNQITDITPVANMTR-------- 222
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L G N++ + + L L +E+ N I + ++ A
Sbjct: 223 ---------LNSLKIGNNKITD------LSPLANLSQLTWLEIGTNQI-----SDIN-AV 261
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
++ L+ LN+ N I+ I L+ L L L L + L + I T
Sbjct: 262 KDLTKLKMLNVGSNQIS---DIS---VLNNLSQLNSLFLNNNQLGNEDMEVIGG----LT 311
Query: 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444
L + L+ N I+ ++ + + +K+ + +
Sbjct: 312 NLTTLFLSQNHITD------IRPLASLSKMDSADFANQV 344
Score = 49.5 bits (119), Expect = 1e-06
Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 22/128 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L L +E+ N I + ++ A ++ KL+ LN+ N I+ I L+ L
Sbjct: 239 LANLSQLTWLEIGTNQI-----SDIN-AVKDLTKLKMLNVGSNQIS---DIS---VLNNL 286
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
L L L + L + I T L + L+ N I+ ++ + + +K+
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGG----LTNLTTLFLSQNHITD------IRPLASLSKMD 336
Query: 126 QINVSENQ 133
+ +
Sbjct: 337 SADFANQV 344
Score = 46.0 bits (110), Expect = 2e-05
Identities = 40/234 (17%), Positives = 79/234 (33%), Gaps = 56/234 (23%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCY 283
A + L + D++ ++ +L + + I G + L+
Sbjct: 22 AEGIRAVLQKA--------SVTDVVTQEELESITKLVVAGEKVASIQGIEYLTN------ 67
Query: 284 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
L+ N++ + L L + + N I +
Sbjct: 68 -----------LEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDI------S 104
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
A + NLR L LN++ I+ I L+ L + LNLG S L++
Sbjct: 105 ALQNLTNLRELYLNEDNISD---IS---PLANLTKMYSLNLGANHN-----LSDLSPLSN 153
Query: 404 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE-EGVEEMEKL 456
T L + +T +++ V + N T L ++++ NQ + + + L
Sbjct: 154 MTGLNYLTVTESKVKD------VTPIANLTDLYSLSLNYNQIEDISPLASLTSL 201
Score = 45.6 bits (109), Expect = 2e-05
Identities = 45/237 (18%), Positives = 83/237 (35%), Gaps = 45/237 (18%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-----GITGCKLLSK-ALH 280
L EL L+++ + LA+L + + L L N ++ L+ +
Sbjct: 112 LRELYLNEDNIS--DISPLANLTK------MYSLNLGANHNLSDLSPLSNMTGLNYLTVT 163
Query: 281 DCYESSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 339
+ + L L N++E+ L +L N I +
Sbjct: 164 ESKVKDVTPIANLTDLYSLSLNYNQIEDISP------LASLTSLHYFTAYVNQITDI--- 214
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 399
L L + +N IT + L+ L L L +G + A
Sbjct: 215 ---TPVANMTRLNSLKIGNNKIT---DLS---PLANLSQLTWLEIGTNQISDINA----- 260
Query: 400 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456
+ D T L+ +N+ N+IS + + N ++L + ++ NQ G E +E + L
Sbjct: 261 -VKDLTKLKMLNVGSNQISD------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310
Score = 43.3 bits (103), Expect = 1e-04
Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 24/141 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L L ++ + N I + A + LR L LN++ I+ I L+ L
Sbjct: 84 LSNLVKLTNLYIGTNKITDI------SALQNLTNLRELYLNEDNISD---IS---PLANL 131
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+ LNLG S L++ T L + +T +++ V + N T L
Sbjct: 132 TKMYSLNLGANHN-----LSDLSPLSNMTGLNYLTVTESKVKD------VTPIANLTDLY 180
Query: 126 QINVSENQFGE-EGVEEMEKL 145
++++ NQ + + + L
Sbjct: 181 SLSLNYNQIEDISPLASLTSL 201
Score = 39.8 bits (94), Expect = 0.001
Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 22/128 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+ L +++ N I + +L L + N I+ I A+ L
Sbjct: 217 VANMTRLNSLKIGNNKITDL------SPLANLSQLTWLEIGTNQISD---IN---AVKDL 264
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
L +LN+G + L + + L + L N++ D+ + + T L
Sbjct: 265 TKLKMLNVGSNQISDISV------LNNLSQLNSLFLNNNQLG---NEDM-EVIGGLTNLT 314
Query: 126 QINVSENQ 133
+ +S+N
Sbjct: 315 TLFLSQNH 322
Score = 39.4 bits (93), Expect = 0.002
Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 24/128 (18%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L L + + N I + L + N IT I ++ +
Sbjct: 173 IANLTDLYSLSLNYNQIEDI------SPLASLTSLHYFTAYVNQIT---DIT---PVANM 220
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
L L +G+ + L + + L + + N+IS + A+K+ TKLK
Sbjct: 221 TRLNSLKIGNNKITDLSP------LANLSQLTWLEIGTNQISD------INAVKDLTKLK 268
Query: 126 QINVSENQ 133
+NV NQ
Sbjct: 269 MLNVGSNQ 276
Score = 39.1 bits (92), Expect = 0.002
Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 23/128 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+ L LE++ + N I + KL +L + N IT I AL L
Sbjct: 62 IEYLTNLEYLNLNGNQITDI------SPLSNLVKLTNLYIGTNKITD---IS---ALQNL 109
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L L L + + L + T + +NL N L + + N T L
Sbjct: 110 TNLRELYLNEDNISD------ISPLANLTKMYSLNLGANHN-----LSDLSPLSNMTGLN 158
Query: 126 QINVSENQ 133
+ V+E++
Sbjct: 159 YLTVTESK 166
Score = 37.9 bits (89), Expect = 0.005
Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 24/127 (18%)
Query: 7 KKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLP 66
L + + + V EE + + L + + I + L
Sbjct: 19 ADLAEGIRAVLQKASVTDV------VTQEELESITKLVVAGEKVAS---IQ---GIEYLT 66
Query: 67 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 126
+L LNL + L++ L ++ + N+I+ + A++N T L++
Sbjct: 67 NLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITD------ISALQNLTNLRE 114
Query: 127 INVSENQ 133
+ ++E+
Sbjct: 115 LYLNEDN 121
Score = 32.9 bits (76), Expect = 0.19
Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 24/143 (16%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSK-ALH 280
RL L + +N + LA+L L L++ N + + L +
Sbjct: 222 RLNSLKIGNNKI--TDLSPLANLS------QLTWLEIGTNQISDINAVKDLTKLKMLNVG 273
Query: 281 DCYESSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 339
S + L L N+L NE ++ L L + + QN I +
Sbjct: 274 SNQISDISVLNNLSQLNSLFLNNNQLGNEDMEV----IGGLTNLTTLFLSQNHITDI--- 326
Query: 340 ALSDAFEENKNLRHLNLNDNTIT 362
+ + + I
Sbjct: 327 ---RPLASLSKMDSADFANQVIK 346
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 49.5 bits (118), Expect = 1e-06
Identities = 33/220 (15%), Positives = 67/220 (30%), Gaps = 23/220 (10%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L L + + G +L S L+EL L N + TG
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGIS---GLQELTLENLEV--TGTAPPPLL------- 116
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
E + L + A + L+ + + Q + +
Sbjct: 117 ---EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF----SCEQV 169
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
L L+L+DN + + K P+L +L L + +++ +
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS-GVCSALAAARV 228
Query: 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
L+ ++L+ N + + ++L +N+S
Sbjct: 229 QLQGLDLSHNSLR---DAAGAPSCDWPSQLNSLNLSFTGL 265
Score = 40.3 bits (94), Expect = 9e-04
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 5/114 (4%)
Query: 22 IYHVGITALSDAFEEN-KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80
I S L L+L+DN + + K P+L +L L + +++
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215
Query: 81 AGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134
+ L+ ++L+ N + + ++L +N+S
Sbjct: 216 PS-GVCSALAAARVQLQGLDLSHNSLR---DAAGAPSCDWPSQLNSLNLSFTGL 265
Score = 34.5 bits (79), Expect = 0.060
Identities = 47/236 (19%), Positives = 70/236 (29%), Gaps = 30/236 (12%)
Query: 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 98
L+ L L + +T PL +A P L ILNL + + A L+
Sbjct: 96 GLQELTLENLEVTGTAPPPLLEA--TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153
Query: 99 VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVL- 157
+++ + V+ L +++S+N E F L L
Sbjct: 154 LSIAQAHSLN-FSCEQVRVFPA---LSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209
Query: 158 ----EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNT 213
E G CS + D LSHN + A + + S N
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLD---------LSHNSLRDAAGAPSCDWPSQLNSLNL 260
Query: 214 S-NQ-SHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL 267
S + A+L LDLS N L + L L N
Sbjct: 261 SFTGLKQVPKGLPAKLSVLDLSYNR--------LDRNPSPDELPQVGNLSLKGNPF 308
Score = 34.1 bits (78), Expect = 0.086
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
Query: 37 NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 96
L+ L++ Q + P+L+ L+L D A TL
Sbjct: 148 KPGLKVLSIAQAHSL---NFSCEQ-VRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203
Query: 97 EDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136
+ + L + G+ + +L+ +++S N +
Sbjct: 204 QVLALRNAGMETPSGV-CSALAAARVQLQGLDLSHNSLRD 242
Score = 33.7 bits (77), Expect = 0.11
Identities = 15/115 (13%), Positives = 32/115 (27%), Gaps = 4/115 (3%)
Query: 20 NGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLK 79
+ G L LNL + + + A P L +L++
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162
Query: 80 SAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134
+ + + L ++L+ N + GL L+ + +
Sbjct: 163 NFSCEQVRVF----PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213
Score = 29.9 bits (67), Expect = 1.7
Identities = 28/189 (14%), Positives = 60/189 (31%), Gaps = 27/189 (14%)
Query: 203 SHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKL 262
+ N + + + + + L L ++ E + AL L L
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP------ALSTLDL 180
Query: 263 NNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKT 322
++N G + L AL L+V + + + +A+
Sbjct: 181 SDNPE--LGERGLISALC--------PLKFPTLQVLALRNAGM-ETPSGVCSALAAARVQ 229
Query: 323 LERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 382
L+ +++ N + + + + L LNL+ + +P G L++L
Sbjct: 230 LQGLDLSHNSLRDAAG---APSCDWPSQLNSLNLSFTGLK---QVPKGL----PAKLSVL 279
Query: 383 NLGDCLLKS 391
+L L
Sbjct: 280 DLSYNRLDR 288
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 49.2 bits (118), Expect = 1e-06
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 16/133 (12%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
VF KL L + + NG+ G + + L++L+L+ N + +
Sbjct: 45 HGVFDKLTQLTKLSLSSNGLSFKGCCS--QSDFGTTSLKYLDLSFNGVIT-----MSSNF 97
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNK 121
L L L+ LK S+ L ++++ G
Sbjct: 98 LGLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHTHTRVAFNG-----IFNGL 149
Query: 122 TKLKQINVSENQF 134
+ L+ + ++ N F
Sbjct: 150 SSLEVLKMAGNSF 162
Score = 47.7 bits (114), Expect = 3e-06
Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 39/220 (17%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
+L +L LS N G +D +S L+ L L+ NG+ +S
Sbjct: 53 QLTKLSLSSNGLSFKGCCSQSDFGTTS----LKYLDLSFNGV-----ITMSSNFLGL--- 100
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L+ + L+ +VF L+ L +++ + F
Sbjct: 101 -------EQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAF----NGIF 146
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
+L L + N+ + ++L +L L+L C L+ ++ +
Sbjct: 147 NGLSSLEVLKMAGNSF--QENFLPD-IFTELRNLTFLDLSQCQLEQLSPTA----FNSLS 199
Query: 406 TLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 444
+L+ +N++ N S+ K L+ ++ S N
Sbjct: 200 SLQVLNMSHNNFFSLDTF-----PYKCLNSLQVLDYSLNH 234
Score = 42.3 bits (100), Expect = 2e-04
Identities = 31/162 (19%), Positives = 51/162 (31%), Gaps = 32/162 (19%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L+ LD+S L +LE LK+ N L +
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGL------SSLEVLKMAGNSFQEN---FLPDIFTELRN- 176
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L + +LE + F L +L+ + M N + + + +
Sbjct: 177 ---------LTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNNFFSLD----TFPY 219
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGD 386
+ +L+ L+ + N I L P SLA LNL
Sbjct: 220 KCLNSLQVLDYSLNHIM---TSKKQ-ELQHFPSSLAFLNLTQ 257
Score = 40.4 bits (95), Expect = 7e-04
Identities = 17/108 (15%), Positives = 41/108 (37%), Gaps = 11/108 (10%)
Query: 338 ITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396
+ +L F++ L L+L+ N +++KG Q+ SL L+L + +
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS--QSDFGTTSLKYLDLSFNGV-----IT 92
Query: 397 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444
++ LE ++ + + + + L +++S
Sbjct: 93 MSSNFLGLEQLEHLDFQHSNLKQ---MSEFSVFLSLRNLIYLDISHTH 137
Score = 39.6 bits (93), Expect = 0.002
Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Query: 27 ITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85
+ +L F++ +L L+L+ N +++KG Q+ SL L+L + +
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS--QSDFGTTSLKYLDLSFNGV-----IT 92
Query: 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 133
++ LE ++ + + + + L +++S
Sbjct: 93 MSSNFLGLEQLEHLDFQHSNLKQ---MSEFSVFLSLRNLIYLDISHTH 137
Score = 36.1 bits (84), Expect = 0.020
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
F L +L+ + M N + + + ++ L+ L+ + N I L
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLD----TFPYKCLNSLQVLDYSLNHIM---TSKKQ-EL 243
Query: 63 SKLP-SLAILNLGD 75
P SLA LNL
Sbjct: 244 QHFPSSLAFLNLTQ 257
Score = 34.6 bits (80), Expect = 0.059
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 11/95 (11%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 409
+ L L N + ++P G KL L L+L L G S + T+L+
Sbjct: 29 SATRLELESNKLQ---SLPHG-VFDKLTQLTKLSLSSNGLSFKGCCSQS--DFGTTSLKY 82
Query: 410 VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444
++L+ N + + +L+ ++ +
Sbjct: 83 LDLSFNGVI-----TMSSNFLGLEQLEHLDFQHSN 112
Score = 33.1 bits (76), Expect = 0.18
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 40 LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV 99
L L N + ++P G KL L L+L L G S + T+L+ +
Sbjct: 30 ATRLELESNKLQ---SLPHG-VFDKLTQLTKLSLSSNGLSFKGCCSQS--DFGTTSLKYL 83
Query: 100 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 133
+L+ N + + +L+ ++ +
Sbjct: 84 DLSFNGVI-----TMSSNFLGLEQLEHLDFQHSN 112
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 48.5 bits (116), Expect = 2e-06
Identities = 50/242 (20%), Positives = 79/242 (32%), Gaps = 66/242 (27%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L L L +N I + + L + L++L ++ N L
Sbjct: 79 HLYALVLVNNKISKIHEKAFSPLRK------LQKLYISKNHL-----------------V 115
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
P +L NR+ K+ VF L+ + +EM N + + G AF
Sbjct: 116 EIPPNLPSSLVELRIHDNRIR----KVPKGVFSGLRNMNCIEMGGNPLENSGFE--PGAF 169
Query: 346 ----------EENK----------NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 385
E K L L+L+ N I AI L L + L L LG
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ---AIELE-DLLRYSKLYRLGLG 225
Query: 386 DCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEIS-VQGGLDLVKAMKNKTKLKQINVSEN 443
+ I TL +++L N++S V GL + L+ + + N
Sbjct: 226 HNQI-----RMIENGSLSFLPTLRELHLDNNKLSRVPAGL------PDLKLLQVVYLHTN 274
Query: 444 QF 445
Sbjct: 275 NI 276
Score = 46.9 bits (112), Expect = 7e-06
Identities = 27/189 (14%), Positives = 57/189 (30%), Gaps = 39/189 (20%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGIT--------GCKLLSKA 278
LVEL + DN + + L + +++ N L + G KL
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRN------MNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178
Query: 279 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG- 337
+ + + + P L N+++ + + L R+ + N I +
Sbjct: 179 ISEAKLTGIPKDLPETLNELHLDHNKIQ----AIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 338 ------------------ITALSDAFEENKNLRHLNLNDNTITY--KGAIPLGQALSKLP 377
++ + + K L+ + L+ N IT K
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294
Query: 378 SLAILNLGD 386
++L +
Sbjct: 295 YYNGISLFN 303
Score = 41.9 bits (99), Expect = 3e-04
Identities = 31/131 (23%), Positives = 46/131 (35%), Gaps = 18/131 (13%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
+ + L L + N I + + KL L L N I I G +LS
Sbjct: 191 LPETLNELH---LDHNKIQAIE----LEDLLRYSKLYRLGLGHNQIR---MIENG-SLSF 239
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV--QGGLDLVKAMKNKT 122
LP+L L+L + L S + L D L+ V L N I+ V +
Sbjct: 240 LPTLRELHLDNNKL-----SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294
Query: 123 KLKQINVSENQ 133
I++ N
Sbjct: 295 YYNGISLFNNP 305
Score = 39.6 bits (93), Expect = 0.001
Identities = 29/163 (17%), Positives = 49/163 (30%), Gaps = 29/163 (17%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
L EL L N I +E L L L L +N + + + +L
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRY------SKLYRLGLGHNQIR----MIENGSLSFLP- 241
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD- 343
L+ N+L + A LK L+ V + N I VG+
Sbjct: 242 ---------TLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287
Query: 344 -AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 385
+ ++L +N + Y + + + G
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWE-VQPA-TFRCVTDRLAIQFG 328
Score = 39.6 bits (93), Expect = 0.001
Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 35/152 (23%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITY--KGA----- 55
VF L+ + +EM N + + G AF+ KL +L +++ +T K
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFE--PGAFD-GLKLNYLRISEAKLTGIPKDLPETLN 196
Query: 56 -----------IPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTC 103
I L L + L L LG + I TL +++L
Sbjct: 197 ELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQI-----RMIENGSLSFLPTLRELHLDN 250
Query: 104 NEIS-VQGGLDLVKAMKNKTKLKQINVSENQF 134
N++S V GL + L+ + + N
Sbjct: 251 NKLSRVPAGL------PDLKLLQVVYLHTNNI 276
Score = 38.1 bits (89), Expect = 0.004
Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 20/133 (15%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
FK L+ L + + N I + AF + L+ L ++ N + IP
Sbjct: 71 KDDFKGLQHLYALVLVNNKISKIH----EKAFSPLRKLQKLYISKNHLV---EIPPNL-- 121
Query: 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDVNLTCNEISVQGGLDLVKAMKNK 432
SL L + D + + K + + + + N + G +
Sbjct: 122 --PSSLVELRIHDNRI-----RKVPKGVFSGLRNMNCIEMGGNPLENSG---FEPGAFDG 171
Query: 433 TKLKQINVSENQF 445
KL + +SE +
Sbjct: 172 LKLNYLRISEAKL 184
Score = 37.7 bits (88), Expect = 0.007
Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 20/133 (15%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
FK L+ L + + N I + AF +KL+ L ++ N + IP
Sbjct: 71 KDDFKGLQHLYALVLVNNKISKIH----EKAFSPLRKLQKLYISKNHLV---EIPPNL-- 121
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDVNLTCNEISVQGGLDLVKAMKNK 121
SL L + D + + K + + + + N + G +
Sbjct: 122 --PSSLVELRIHDNRI-----RKVPKGVFSGLRNMNCIEMGGNPLENSG---FEPGAFDG 171
Query: 122 TKLKQINVSENQF 134
KL + +SE +
Sbjct: 172 LKLNYLRISEAKL 184
Score = 35.0 bits (81), Expect = 0.044
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 4 AVFKKLKTLEHVEMPQNGIYHVGITALSD--AFEENKKLRHLNLNDNTITYKGAIPLGQA 61
A LK L+ V + N I VG+ + ++L +N + Y +
Sbjct: 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE-VQPA-T 315
Query: 62 LSKLPSLAILNLG 74
+ + G
Sbjct: 316 FRCVTDRLAIQFG 328
Score = 32.3 bits (74), Expect = 0.29
Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 27/122 (22%)
Query: 349 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK-------YL 401
+ L+L +N I+ + L L L L + + + + Y+
Sbjct: 54 PDTTLLDLQNNDIS---ELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109
Query: 402 TDN----------TTLEDVNLTCNEIS-VQGGLDLVKAMKNKTKLKQINVSENQFGEEGV 450
+ N ++L ++ + N I V G + I + N G
Sbjct: 110 SKNHLVEIPPNLPSSLVELRIHDNRIRKVPKG-----VFSGLRNMNCIEMGGNPLENSGF 164
Query: 451 EE 452
E
Sbjct: 165 EP 166
Score = 30.8 bits (70), Expect = 1.00
Identities = 22/136 (16%), Positives = 36/136 (26%), Gaps = 25/136 (18%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
+L L L N I L+ L L EL L+NN L + L D
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLP------TLRELHLDNNKL-----SRVPAGLPDL--- 263
Query: 286 SKKEGSPLALKVFIAGRNRLEN--EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
L+V N + K + + N + + +
Sbjct: 264 -------KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP--A 314
Query: 344 AFEENKNLRHLNLNDN 359
F + + +
Sbjct: 315 TFRCVTDRLAIQFGNY 330
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 48.9 bits (117), Expect = 2e-06
Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 29/224 (12%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 286
+ L + N + + ++ + + + + N +G K
Sbjct: 379 VENLSFAHNKL-----KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD-------PLD 426
Query: 287 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQN---GIYHVGITALSD 343
+ + N++ K +F L + + N I + ++
Sbjct: 427 PTPFKGINVSSINLSNNQIS----KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
F+ L ++L N +T + + LP L ++L S +
Sbjct: 483 NFKNTYLLTSIDLRFNKLT---KLSDDFRATTLPYLVGIDLSYNSF-----SKFPTQPLN 534
Query: 404 NTTLEDVNLTCNEISVQGGL--DLVKAMKNKTKLKQINVSENQF 445
++TL+ + + + + + L Q+ + N
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578
Score = 44.6 bits (106), Expect = 5e-05
Identities = 57/450 (12%), Positives = 120/450 (26%), Gaps = 121/450 (26%)
Query: 26 GITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85
++ + K + N IT+ + +A+ +L L +G+ +
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITF---VS--KAVMRLTKLRQFYMGNSPFVAENICE 225
Query: 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 145
+ N E E L L + V + KL
Sbjct: 226 AWE----NENSEYAQQYKTEDLKWDNL---------KDLTDVEVYNCPN-------LTKL 265
Query: 146 MKSFGMAAAL-VLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSH 204
+ ++ N++ N +
Sbjct: 266 PTFLKALPEMQLI-----------------------------NVACNRGISGEQLKDDWQ 296
Query: 205 NNSNQSHNTSNQ----SHMSLKTG---------ARLVELDLSDNAF-GPIGVEGLADLLR 250
++ Q + +LKT +L L+ N G + ++
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL--PAFGSEIK 354
Query: 251 SSCCFALEELKLNNNGLGITG-----CKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 305
L L L N + T C + ++ N+L
Sbjct: 355 ------LASLNLAYNQI--TEIPANFCGFTEQ-----------------VENLSFAHNKL 389
Query: 306 ENEGAKMLAAVF--KKLKTLERVEMPQN---GIYHVGITALSDAFEENKNLRHLNLNDNT 360
+ + +F K + + ++ N + L + N+ +NL++N
Sbjct: 390 KY-----IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444
Query: 361 ITYKGAIPLGQALSKLPSLAILNLGDCLLKS---AGASSIAKYLTDNTTLEDVNLTCNEI 417
I+ + S L+ +NL +L + + L ++L N++
Sbjct: 445 IS--KFPK--ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500
Query: 418 SVQGGLDLVKAMKNKTKLKQINVSENQFGE 447
+ L L I++S N F +
Sbjct: 501 T---KLSDDFRATTLPYLVGIDLSYNSFSK 527
Score = 43.9 bits (104), Expect = 8e-05
Identities = 69/433 (15%), Positives = 135/433 (31%), Gaps = 89/433 (20%)
Query: 36 ENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 95
N ++ L+L + G +P A+ +L L +L LG K K ++ N +
Sbjct: 79 SNGRVTGLSLEGFGAS--GRVP--DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134
Query: 96 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 155
E +++ + + E+ L+K
Sbjct: 135 DEQKQ-----------------------KMRMHYQKTFVDYDPREDFSDLIK-------D 164
Query: 156 VLEDDEGECSDEEQDEESEEENDSDAEGDNS----------------NLSHNDSNHSHNA 199
+ D + S ++ + ++ +N + ++ +
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENIC 224
Query: 200 SNQSHNN--SNQSHNTSNQSHMSLKTGARLVELDLSDNAF-GPIGVEGLADLLRSSCCFA 256
+ N Q + T + +LK L ++++ + + L L
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLK---DLTDVEVYNCPNLTKLPTF-LKALPE------ 274
Query: 257 LEELKL-NNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAA 315
++ + + N G+ K +AL D K +++ G N L+ +
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEK-------IQIIYIGYNNLKTFP---VET 324
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375
+K+K L +E N + AF L LNL N IT IP
Sbjct: 325 SLQKMKKLGMLECLYNQL-----EGKLPAFGSEIKLASLNLAYNQIT---EIP-ANFCGF 375
Query: 376 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLV---KAMKNK 432
+ L+ LK AK + + + ++ + NEI G +
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSV---SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432
Query: 433 TKLKQINVSENQF 445
+ IN+S NQ
Sbjct: 433 INVSSINLSNNQI 445
Score = 43.1 bits (102), Expect = 2e-04
Identities = 32/248 (12%), Positives = 74/248 (29%), Gaps = 50/248 (20%)
Query: 227 LVELDLSDNAF--GPIGVEGLADLLRSSCCFALEELKLNNNGL-------GITGCKLLSK 277
+ ++++ N G + L + ++ + + N L + K
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK---- 330
Query: 278 ALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG 337
L + N+LE F L + + N I
Sbjct: 331 ----------------KLGMLECLYNQLEG-----KLPAFGSEIKLASLNLAYNQI---- 365
Query: 338 ITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA-- 394
T + ++ + + +L+ N + Y IP + ++ ++ + S
Sbjct: 366 -TEIPANFCGFTEQVENLSFAHNKLKY---IPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421
Query: 395 -SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEM 453
+ + +NL+ N+IS + + L IN+ N E +
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQIS---KFPK-ELFSTGSPLSSINLMGNMLTEIPKNSL 477
Query: 454 EKLMKSFG 461
+ ++F
Sbjct: 478 KDENENFK 485
Score = 40.8 bits (96), Expect = 8e-04
Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 13/137 (9%)
Query: 6 FKKLKTLEHVEMPQN---GIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
K + + ++ N + L + + +NL++N I+ +
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS--KFPK--ELF 453
Query: 63 SKLPSLAILNLGDCLLKS---AGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 119
S L+ +NL +L + + L ++L N+++ L
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT---KLSDDFRAT 510
Query: 120 NKTKLKQINVSENQFGE 136
L I++S N F +
Sbjct: 511 TLPYLVGIDLSYNSFSK 527
Score = 40.0 bits (94), Expect = 0.002
Identities = 19/135 (14%), Positives = 44/135 (32%), Gaps = 13/135 (9%)
Query: 5 VFKKLKTLEHVEMPQN---GIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
+F L + + N I + ++ F+ L ++L N +T +
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT---KLSDDFR 508
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGL--DLVKAMK 119
+ LP L ++L S +++TL+ + + + + +
Sbjct: 509 ATTLPYLVGIDLSYNSF-----SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563
Query: 120 NKTKLKQINVSENQF 134
L Q+ + N
Sbjct: 564 LCPSLTQLQIGSNDI 578
Score = 39.3 bits (92), Expect = 0.003
Identities = 48/426 (11%), Positives = 105/426 (24%), Gaps = 101/426 (23%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDA----FEENKKLRHLNLNDNTITYKGAIPLGQA 61
K L ++ + + N +K++ + + N + P+ +
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK---TFPVETS 325
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK 121
L K+ L +L L L +NL N+I+ ++
Sbjct: 326 LQKMKKLGMLECLYNQL-----EGKLPAFGSEIKLASLNLAYNQIT-----EIPANFCGF 375
Query: 122 -TKLKQINVSENQFGE----EGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEE 176
+++ ++ + N+ + + + +
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSA-------IDF------------------- 409
Query: 177 NDSDAEGDNSNLSHNDSNHSHNASNQSHNNSN-Q----SHN--TSNQSHMSLKTGARLVE 229
+ + D + N S+N + TG+ L
Sbjct: 410 -------SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE-LFSTGSPLSS 461
Query: 230 LDLSDNAFGPIGVEGLADLLRS-SCCFALEELKLNNNGL-----GITGCKLLSKALHDCY 283
++L N I L D + + L + L N L L
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY------- 514
Query: 284 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG--ITAL 341
L N TL+ + +
Sbjct: 515 -----------LVGIDLSYNSFSK-----FPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558
Query: 342 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 401
+ +L L + N I + P++++L++ D S S + Y+
Sbjct: 559 PEGITLCPSLTQLQIGSNDIR---KVN----EKITPNISVLDIKDNPNISIDLSYVCPYI 611
Query: 402 TDNTTL 407
+
Sbjct: 612 EAGMYM 617
Score = 33.5 bits (77), Expect = 0.15
Identities = 12/99 (12%), Positives = 24/99 (24%), Gaps = 6/99 (6%)
Query: 349 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 408
L L L + + + +S S + + D + L
Sbjct: 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR--EDFSDLI 162
Query: 409 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447
+ + + K+ + K QI N
Sbjct: 163 KDCINSDPQQ----KSIKKSSRITLKDTQIGQLSNNITF 197
Score = 31.9 bits (73), Expect = 0.55
Identities = 22/141 (15%), Positives = 38/141 (26%), Gaps = 13/141 (9%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+L LE + + +G N +
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ-------KTFVDYD 153
Query: 66 PSLAILNLGDCLLKSA-GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 124
P +L + S SI K + N I+ + KA+ TKL
Sbjct: 154 PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-----VSKAVMRLTKL 208
Query: 125 KQINVSENQFGEEGVEEMEKL 145
+Q + + F E + E +
Sbjct: 209 RQFYMGNSPFVAENICEAWEN 229
Score = 31.6 bits (72), Expect = 0.71
Identities = 22/141 (15%), Positives = 39/141 (27%), Gaps = 13/141 (9%)
Query: 317 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 376
+L LE + + +G N + +
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ-------KTFVDYD 153
Query: 377 PSLAILNLGDCLLKSA-GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 435
P +L + S SI K + N I+ + KA+ TKL
Sbjct: 154 PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-----VSKAVMRLTKL 208
Query: 436 KQINVSENQFGEEGVEEMEKL 456
+Q + + F E + E +
Sbjct: 209 RQFYMGNSPFVAENICEAWEN 229
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 48.3 bits (115), Expect = 3e-06
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 15/106 (14%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQALS 63
F + L ++++ N + L F + + L L L +N I + A
Sbjct: 83 AFVPVPNLRYLDLSSNHL-----HTLDEFLFSDLQALEVLLLYNNHIV---VVDRN-AFE 133
Query: 64 KLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEIS 107
+ L L L + L L ++L+ N++
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKL---PKLMLLDLSSNKLK 176
Score = 48.3 bits (115), Expect = 3e-06
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 15/106 (14%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 374
F + L +++ N + L F + + L L L +N I + A
Sbjct: 83 AFVPVPNLRYLDLSSNHL-----HTLDEFLFSDLQALEVLLLYNNHIV---VVDRN-AFE 133
Query: 375 KLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEIS 418
+ L L L + L L ++L+ N++
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKL---PKLMLLDLSSNKLK 176
Score = 47.1 bits (112), Expect = 6e-06
Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375
+L L + + N + + S+AF NLR+L+L+ N + + S
Sbjct: 59 TPTRLTNLHSLLLSHNHLNFIS----SEAFVPVPNLRYLDLSSNHLH---TLDEF-LFSD 110
Query: 376 LPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDVNLTCNEI-SVQGGLDLVKAMKNKT 433
L +L +L L + + + + ++ L+ + L+ N+I L+K
Sbjct: 111 LQALEVLLLYNNHI-----VVVDRNAFEDMAQLQKLYLSQNQISRFPVE--LIKDGNKLP 163
Query: 434 KLKQINVSENQF 445
KL +++S N+
Sbjct: 164 KLMLLDLSSNKL 175
Score = 46.0 bits (109), Expect = 2e-05
Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 17/132 (12%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
+L L + + N + + S+AF LR+L+L+ N + + S
Sbjct: 59 TPTRLTNLHSLLLSHNHLNFIS----SEAFVPVPNLRYLDLSSNHLH---TLDEF-LFSD 110
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDVNLTCNEI-SVQGGLDLVKAMKNKT 122
L +L +L L + + + + ++ L+ + L+ N+I L+K
Sbjct: 111 LQALEVLLLYNNHI-----VVVDRNAFEDMAQLQKLYLSQNQISRFPVE--LIKDGNKLP 163
Query: 123 KLKQINVSENQF 134
KL +++S N+
Sbjct: 164 KLMLLDLSSNKL 175
Score = 36.0 bits (83), Expect = 0.020
Identities = 37/196 (18%), Positives = 62/196 (31%), Gaps = 62/196 (31%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 286
L LDLS N + +DL LE L L NN +
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQA------LEVLLLYNNHI------------------- 124
Query: 287 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 346
++ F+ + L+++ + QN I + + D
Sbjct: 125 ----------------VVVDRN-------AFEDMAQLQKLYLSQNQISRFPVELIKD-GN 160
Query: 347 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG--------DCLLKSAGASSIA 398
+ L L+L+ N + +PL L KLP+ L DC L +
Sbjct: 161 KLPKLMLLDLSSNKLKK---LPLT-DLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQY 216
Query: 399 KYLTDNTTLEDVNLTC 414
+ L+ ++ +L C
Sbjct: 217 RQLSSVMDFQE-DLYC 231
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 46.8 bits (111), Expect = 3e-06
Identities = 18/143 (12%), Positives = 53/143 (37%), Gaps = 11/143 (7%)
Query: 302 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTI 361
+R+ + G A+ + L+ V + L + ++ ++ D+ I
Sbjct: 15 HDRIRDVGPDRAASEWL-LRCGAMVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCI 73
Query: 362 TYKGAIPLGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLT-CNEISV 419
G + L + + L C ++ +++ ++ ++ + C ++
Sbjct: 74 MSIGF----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129
Query: 420 QGGLDLVKAMKNKTKLKQINVSE 442
+G + A+ + LK + +S+
Sbjct: 130 KG----IIALHHFRNLKYLFLSD 148
Score = 46.4 bits (110), Expect = 4e-06
Identities = 14/111 (12%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 23 YHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC-LLKSA 81
+ L + K++ ++ D+ I G + L + + L C ++
Sbjct: 46 WQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCHYIEDG 101
Query: 82 GASSIAKYLTDNTTLEDVNLT-CNEISVQGGLDLVKAMKNKTKLKQINVSE 131
+++ ++ ++ + C ++ +G + A+ + LK + +S+
Sbjct: 102 CLERLSQLENLQKSMLEMEIISCGNVTDKG----IIALHHFRNLKYLFLSD 148
Score = 33.3 bits (76), Expect = 0.089
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 337 GITALSDAFEENKNLRHLNLNDNT-ITYKGAIPLGQALSKLPSLAILNLGDC 387
+ LS K++ + + +T KG AL +L L L D
Sbjct: 102 CLERLSQLENLQKSMLEMEIISCGNVTDKGI----IALHHFRNLKYLFLSDL 149
Score = 32.9 bits (75), Expect = 0.10
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 26 GITALSDAFEENKKLRHLNLNDNT-ITYKGAIPLGQALSKLPSLAILNLGDC 76
+ LS K + + + +T KG AL +L L L D
Sbjct: 102 CLERLSQLENLQKSMLEMEIISCGNVTDKGI----IALHHFRNLKYLFLSDL 149
Score = 28.7 bits (64), Expect = 3.3
Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 50/158 (31%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
++ +D +D+ IG + +E+++L C +
Sbjct: 62 KIQAIDATDSCIMSIGFD------HMEGLQYVEKIRLC-------KCHYIE--------- 99
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDA 344
+ + L+ + K++ +E+ G + GI AL
Sbjct: 100 ---------------------DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138
Query: 345 FEENKNLRHLNLNDNT-ITYKGAIPLGQALSKLPSLAI 381
+NL++L L+D + K I + LPSL +
Sbjct: 139 ----RNLKYLFLSDLPGVKEKEKIVQ-AFKTSLPSLEL 171
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 47.7 bits (114), Expect = 3e-06
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372
+ F L+ +++ + I + A++ +L L L N I ++ LG A
Sbjct: 45 SYSFFSFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQ---SLALG-A 95
Query: 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKN 431
S L SL L + L +S+ + + TL+++N+ N I L + N
Sbjct: 96 FSGLSSLQKLVAVETNL-----ASLENFPIGHLKTLKELNVAHNLIQS---FKLPEYFSN 147
Query: 432 KTKLKQINVSENQ 444
T L+ +++S N+
Sbjct: 148 LTNLEHLDLSSNK 160
Score = 46.9 bits (112), Expect = 6e-06
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 19/133 (14%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
+ F L+ +++ + I + A++ L L L N I ++ LG A
Sbjct: 45 SYSFFSFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQ---SLALG-A 95
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKN 120
S L SL L + L +S+ + + TL+++N+ N I L + N
Sbjct: 96 FSGLSSLQKLVAVETNL-----ASLENFPIGHLKTLKELNVAHNLIQS---FKLPEYFSN 147
Query: 121 KTKLKQINVSENQ 133
T L+ +++S N+
Sbjct: 148 LTNLEHLDLSSNK 160
Score = 44.2 bits (105), Expect = 5e-05
Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 16/133 (12%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
F L +L+ + + + +L + K L+ LN+ N I + L +
Sbjct: 93 LGAFSGLSSLQKLVAVETNL-----ASLENFPIGHLKTLKELNVAHNLIQ---SFKLPEY 144
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE-DVNLTCNEISVQGGLDLVKAMKN 120
S L +L L+L ++S + + L L ++L+ N ++ +
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNF-----IQPGAFK 198
Query: 121 KTKLKQINVSENQ 133
+ +LK++ + NQ
Sbjct: 199 EIRLKELALDTNQ 211
Score = 39.2 bits (92), Expect = 0.002
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375
LKTL+ + + N I L + F NL HL+L+ N I +I L
Sbjct: 119 PIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQ---SIYCT-DLRV 171
Query: 376 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTK 434
L + +LNL L + I L+++ L N++ SV G T
Sbjct: 172 LHQMPLLNL-SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG-----IFDRLTS 225
Query: 435 LKQINVSEN 443
L++I + N
Sbjct: 226 LQKIWLHTN 234
Score = 31.5 bits (72), Expect = 0.45
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
+ L + + + + + + + +L+ L L+ N + ++P G
Sbjct: 166 CTDLRVLHQMPLLNL-SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK---SVPDG-IF 220
Query: 63 SKLPSLAILNLGD 75
+L SL + L
Sbjct: 221 DRLTSLQKIWLHT 233
Score = 30.7 bits (70), Expect = 0.81
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 18/98 (18%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTL 407
+ ++L+L+ N + + + + P L +L+L C +++ GA + L
Sbjct: 29 STKNLDLSFNPLRH---LGSY-SFFSFPELQVLDLSRCEIQTIEDGA------YQSLSHL 78
Query: 408 EDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 444
+ LT N I S+ G A + L+++ E
Sbjct: 79 STLILTGNPIQSLALG-----AFSGLSSLQKLVAVETN 111
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 48.1 bits (115), Expect = 3e-06
Identities = 43/234 (18%), Positives = 83/234 (35%), Gaps = 59/234 (25%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
++ L+L+D I A +++L + N + L +
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHT------IQKLYMGFNAIR----YLPPHVFQNV--- 116
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L V + RN L + + +F L + M N + + D F
Sbjct: 117 -------PLLTVLVLERNDLSS----LPRGIFHNTPKLTTLSMSNNNLERIE----DDTF 161
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
+ +L++L L+ N +T + L +PSL N+ LL + L
Sbjct: 162 QATTSLQNLQLSSNRLT---HVDLSL----IPSLFHANVSYNLLST---------LAIPI 205
Query: 406 TLEDVNLTCNEIS-VQGG-------LDL-------VKAMKNKTKLKQINVSENQ 444
+E+++ + N I+ V+G L L + N L ++++S N+
Sbjct: 206 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 259
Score = 47.7 bits (114), Expect = 5e-06
Identities = 63/391 (16%), Positives = 115/391 (29%), Gaps = 90/391 (23%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
AA+ + +E + + I + + AF ++ L + N I Y +P
Sbjct: 62 AALLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRY---LPPH-VF 113
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
+P L +L L L S + L ++++ N + ++ + T
Sbjct: 114 QNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLER---IE-DDTFQATT 165
Query: 123 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAE 182
L+ + +S N+ + + L + N
Sbjct: 166 SLQNLQLSSNRLTHVDLSLIPSLFH-------ANVSY-----------------NLLSTL 201
Query: 183 GDNSNL-----SHNDSNHSHNASNQS----HNNSNQSHNTSNQSHMSLKTGARLVELDLS 233
+ SHN N N N +T+ + LVE+DLS
Sbjct: 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP-----GLVEVDLS 256
Query: 234 DNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPL 293
N I + R LE L ++NN L L+
Sbjct: 257 YNELEKIMYHPFVKMQR------LERLYISNNRL-----VALNLYGQPIP---------- 295
Query: 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRH 353
LKV N L + + + LE + + N I + ++ L++
Sbjct: 296 TLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVTLKLSTHH-------TLKN 343
Query: 354 LNLNDNTITYKGAIPLGQALSKLPSLAILNL 384
L L+ N L + A+ +
Sbjct: 344 LTLSHNDWDC---NSLRALFRNVARPAVDDA 371
Score = 43.9 bits (104), Expect = 7e-05
Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 39/172 (22%)
Query: 220 SLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 279
+L + ELD S N+ +++R L LKL +N L T L
Sbjct: 200 TLAIPIAVEELDASHNSI---------NVVRGPVNVELTILKLQHNNLTDTA------WL 244
Query: 280 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 339
+ L N LE K++ F K++ LER+ + N +
Sbjct: 245 LNYP----------GLVEVDLSYNELE----KIMYHPFVKMQRLERLYISNNRL-----V 285
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
AL+ + L+ L+L+ N + + + + + L L L + +
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVT 332
Score = 43.1 bits (102), Expect = 1e-04
Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 16/132 (12%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
AA+ + +E + + I + + AF ++ L + N I Y +P
Sbjct: 62 AALLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRY---LPPH-VF 113
Query: 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 433
+P L +L L L S + L ++++ N + ++ + T
Sbjct: 114 QNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLER---IE-DDTFQATT 165
Query: 434 KLKQINVSENQF 445
L+ + +S N+
Sbjct: 166 SLQNLQLSSNRL 177
Score = 35.4 bits (82), Expect = 0.031
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 12/96 (12%)
Query: 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 97
+ + ++T+ +P L + +LNL D ++ + T++
Sbjct: 45 NNQKIVTFKNSTMRK---LPAA-LLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQ 96
Query: 98 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 133
+ + N I L +N L + + N
Sbjct: 97 KLYMGFNAIRY---LP-PHVFQNVPLLTVLVLERND 128
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 48.4 bits (116), Expect = 3e-06
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
F+ + +L L+L+ N+++ G + +L L LN+ L G S L
Sbjct: 95 GFKCSASLTSLDLSRNSLS--GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL-- 150
Query: 404 NTTLEDVNLTCNEISVQGGL-DLVKAMKNKTKLKQINVSENQF 445
+LE ++L+ N IS G +LK + +S N+
Sbjct: 151 -NSLEVLDLSANSIS--GANVVGWVLSDGCGELKHLAISGNKI 190
Score = 48.0 bits (115), Expect = 5e-06
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 33 AFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 92
F+ + L L+L+ N+++ G + +L L LN+ L G S L
Sbjct: 95 GFKCSASLTSLDLSRNSLS--GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL-- 150
Query: 93 NTTLEDVNLTCNEISVQGGL-DLVKAMKNKTKLKQINVSENQF 134
+LE ++L+ N IS G +LK + +S N+
Sbjct: 151 -NSLEVLDLSANSIS--GANVVGWVLSDGCGELKHLAISGNKI 190
Score = 46.4 bits (111), Expect = 2e-05
Identities = 50/265 (18%), Positives = 99/265 (37%), Gaps = 46/265 (17%)
Query: 185 NSNLSHNDSNHSHNASNQSHNNS-NQSHNTSNQSHMSLKTGARLVELDLSDNAF-GPI-G 241
+ L+ S S + + + S S++ N S K A L LDLS N+ GP+
Sbjct: 59 SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTT 118
Query: 242 VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 301
+ L L+ L +++N L G L+ +L+V
Sbjct: 119 LTSLGSCSG------LKFLNVSSNTLDFPGKVSGGLKLN-------------SLEVLDLS 159
Query: 302 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY-HVGITALSDAFEENKNLRHLNLNDNT 360
N + + L+ + + N I V ++ NL L+++ N
Sbjct: 160 ANSISGANVVGW-VLSDGCGELKHLAISGNKISGDVDVSRCV-------NLEFLDVSSNN 211
Query: 361 ITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 420
+ IP L +L L++ L + ++ ++ T L+ +N++ N+
Sbjct: 212 FS--TGIP---FLGDCSALQHLDISGNKL----SGDFSRAISTCTELKLLNISSNQFV-- 260
Query: 421 GGLDLVKAMKNKTKLKQINVSENQF 445
G + + L+ ++++EN+F
Sbjct: 261 GPIPPL----PLKSLQYLSLAENKF 281
Score = 40.7 bits (96), Expect = 0.001
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 29 ALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 88
A+S + L L L+++ I G++ SL L+L L +G +
Sbjct: 68 AVSSSLLSLTGLESLFLSNSHIN--GSVS---GFKCSASLTSLDLSRNSL--SGPVTTLT 120
Query: 89 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134
L + L+ +N++ N + G + L+ +++S N
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSG---GLKLNSLEVLDLSANSI 163
Score = 38.0 bits (89), Expect = 0.007
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
KL +LE +++ N I + +L+HL ++ N I+ G + + +
Sbjct: 147 GLKLNSLEVLDLSANSI-SGANVVGWVLSDGCGELKHLAISGNKIS--GDVDVS----RC 199
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L L++ S G + + L+ ++++ N++S G +A+ T+LK
Sbjct: 200 VNLEFLDVSSNNF-STGIPFLGD----CSALQHLDISGNKLS--GDFS--RAISTCTELK 250
Query: 126 QINVSENQF 134
+N+S NQF
Sbjct: 251 LLNISSNQF 259
Score = 36.8 bits (86), Expect = 0.014
Identities = 46/237 (19%), Positives = 79/237 (33%), Gaps = 52/237 (21%)
Query: 226 RLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
LV L LS N G I L L + L +LKL N L G + + L
Sbjct: 419 ELVSLHLSFNYLSGTIPSS-LGSLSK------LRDLKLWLNML--EG--EIPQELMYVKT 467
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
L+ I N L E + + L + + N + G +
Sbjct: 468 ----------LETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLT--G--EIPKW 509
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD---------CLLKSAGAS 395
+NL L L++N+ + G IP L SL L+L + K +G
Sbjct: 510 IGRLENLAILKLSNNSFS--GNIP--AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565
Query: 396 S-------IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ Y+ ++ ++ + N + QG + + + N++ +
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS--EQLNRLSTRNPCNITSRVY 620
Score = 36.8 bits (86), Expect = 0.014
Identities = 46/221 (20%), Positives = 79/221 (35%), Gaps = 39/221 (17%)
Query: 226 RLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
L LDLS N F G + ++ +L L L++N +G + L +
Sbjct: 344 GLKVLDLSFNEFSGELPES------LTNLSASLLTLDLSSNNF--SG--PILPNLCQNPK 393
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
++ L+ N + + L + + N + G + +
Sbjct: 394 NT--------LQELYLQNNGFTGK----IPPTLSNCSELVSLHLSFNYL--SG--TIPSS 437
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404
LR L L N + G IP Q L + +L L L L G I L++
Sbjct: 438 LGSLSKLRDLKLWLNMLE--GEIP--QELMYVKTLETLILDFNDLT--G--EIPSGLSNC 489
Query: 405 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
T L ++L+ N ++ G + K + L + +S N F
Sbjct: 490 TNLNWISLSNNRLT--GEIP--KWIGRLENLAILKLSNNSF 526
Score = 36.8 bits (86), Expect = 0.015
Identities = 18/97 (18%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 97
L L+++ N + IP L +L L++ L + ++ ++ T L+
Sbjct: 200 VNLEFLDVSSNNFS--TGIP---FLGDCSALQHLDISGNKL----SGDFSRAISTCTELK 250
Query: 98 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134
+N++ N+ G + + L+ ++++EN+F
Sbjct: 251 LLNISSNQFV--GPIPPL----PLKSLQYLSLAENKF 281
Score = 36.8 bits (86), Expect = 0.017
Identities = 55/233 (23%), Positives = 91/233 (39%), Gaps = 32/233 (13%)
Query: 220 SLKTGARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNGL------GITGC 272
+ L L LS+N+F G I E L D C +L L LN N +
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAE-LGD------CRSLIWLDLNTNLFNGTIPAAMFKQ 561
Query: 273 KLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 332
A + + K N LE +G + + +L T +
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG--IRSEQLNRLSTRNPCNITSRV 619
Query: 333 IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 392
G S F+ N ++ L+++ N ++ G IP + + +P L ILNLG +
Sbjct: 620 YG--G--HTSPTFDNNGSMMFLDMSYNMLS--GYIP--KEIGSMPYLFILNLGHNDI--- 668
Query: 393 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ SI + D L ++L+ N++ G + +AM T L +I++S N
Sbjct: 669 -SGSIPDEVGDLRGLNILDLSSNKLD--GRIP--QAMSALTMLTEIDLSNNNL 716
Score = 36.4 bits (85), Expect = 0.020
Identities = 48/257 (18%), Positives = 87/257 (33%), Gaps = 49/257 (19%)
Query: 203 SHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELK 261
S N + S ++ L LDLS N+ G + + S C L+ L
Sbjct: 134 SSNTLDFPGKVSGGLKLN-----SLEVLDLSANSISGAN----VVGWVLSDGCGELKHLA 184
Query: 262 LNNNGLG----ITGCKLLSK-ALHDCYESSKKEGS-PL-----ALKVFIAGRNRLENEGA 310
++ N + ++ C L + S P AL+ N+L +
Sbjct: 185 ISGNKISGDVDVSRCVNLEFLDVSSNNFS----TGIPFLGDCSALQHLDISGNKLSGD-- 238
Query: 311 KMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF--EENKNLRHLNLNDNTITYKGAIP 368
+ L+ + + N K+L++L+L +N T G IP
Sbjct: 239 --FSRAISTCTELKLLNISSNQ--------FVGPIPPLPLKSLQYLSLAENKFT--GEIP 286
Query: 369 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 428
+L L+L ++ + + LE + L+ N S G +
Sbjct: 287 -DFLSGACDTLTGLDLSGNHF----YGAVPPFFGSCSLLESLALSSNNFS---GELPMDT 338
Query: 429 MKNKTKLKQINVSENQF 445
+ LK +++S N+F
Sbjct: 339 LLKMRGLKVLDLSFNEF 355
Score = 35.7 bits (83), Expect = 0.035
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 97
+L L+L+ N ++ G IP +L L L L L +L+ G I + L TLE
Sbjct: 418 SELVSLHLSFNYLS--GTIP--SSLGSLSKLRDLKLWLNMLE--G--EIPQELMYVKTLE 469
Query: 98 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134
+ L N+++ G + + N T L I++S N+
Sbjct: 470 TLILDFNDLT--GEIP--SGLSNCTNLNWISLSNNRL 502
Score = 34.5 bits (80), Expect = 0.073
Identities = 57/239 (23%), Positives = 86/239 (35%), Gaps = 50/239 (20%)
Query: 226 RLVELDLSDNAF-GPI-----GVEGLADLLRSSCCF-------------ALEELKLNNNG 266
L LDLS N F G + L L SS F L+ L L+ N
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 267 LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 326
+G L ++L + S L N G + TL+ +
Sbjct: 355 F--SG--ELPESLTNLSAS---------LLTLDLSSNNF--SGPILPNLCQNPKNTLQEL 399
Query: 327 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386
+ NG G + L L+L+ N ++ G IP +L L L L L
Sbjct: 400 YLQNNGF--TGK--IPPTLSNCSELVSLHLSFNYLS--GTIP--SSLGSLSKLRDLKLWL 451
Query: 387 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+L+ G I + L TLE + L N+++ G + + N T L I++S N+
Sbjct: 452 NMLE--G--EIPQELMYVKTLETLILDFNDLT--GEIP--SGLSNCTNLNWISLSNNRL 502
Score = 32.2 bits (74), Expect = 0.44
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 97
K L++L+L +N T G IP +L L+L ++ + + LE
Sbjct: 269 KSLQYLSLAENKFT--GEIP-DFLSGACDTLTGLDLSGNHF----YGAVPPFFGSCSLLE 321
Query: 98 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134
+ L+ N S G + + LK +++S N+F
Sbjct: 322 SLALSSNNFS---GELPMDTLLKMRGLKVLDLSFNEF 355
Score = 32.2 bits (74), Expect = 0.48
Identities = 44/264 (16%), Positives = 85/264 (32%), Gaps = 35/264 (13%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L L +++ N + G + K L L L+ N +T G IP LS
Sbjct: 438 LGSLSKLRDLKLWLNMLE--G--EIPQELMYVKTLETLILDFNDLT--GEIP--SGLSNC 489
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L ++L + L I K++ L + L+ N S G ++ + + L
Sbjct: 490 TNLNWISLSNNRLT----GEIPKWIGRLENLAILKLSNNSFS--G--NIPAELGDCRSLI 541
Query: 126 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDN 185
++++ N F G + + + + + + + G
Sbjct: 542 WLDLNTNLF--NG-----TIPAAMFK---QSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 186 SNLSHNDSNHSHNASNQSHNNSNQSHNT-SNQSHMSLKTGARLVELDLSDNAF-GPIGVE 243
+ L + N N + + + ++ LD+S N G I E
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 244 GLADLLRSSCCFALEELKLNNNGL 267
+ L L L +N +
Sbjct: 652 -IGS------MPYLFILNLGHNDI 668
Score = 31.4 bits (72), Expect = 0.78
Identities = 45/223 (20%), Positives = 80/223 (35%), Gaps = 43/223 (19%)
Query: 226 RLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
L L++S N F GPI +L+ L L N TG + L
Sbjct: 248 ELKLLNISSNQFVGPIP---------PLPLKSLQYLSLAENKF--TG--EIPDFL----- 289
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG-ITALSD 343
G+ L N + F LE + + N G + D
Sbjct: 290 ----SGACDTLTGLDLSGNHFYGA----VPPFFGSCSLLESLALSSNNF--SGELPM--D 337
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKL-PSLAILNLGDCLLKSAGASSIAKYLT 402
+ + L+ L+L+ N + G +P ++L+ L SL L+L ++ +
Sbjct: 338 TLLKMRGLKVLDLSFNEFS--GELP--ESLTNLSASLLTLDLSSNNFSGPILPNLCQNP- 392
Query: 403 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
TL+++ L N + G + + N ++L +++S N
Sbjct: 393 -KNTLQELYLQNNGFT--GKIP--PTLSNCSELVSLHLSFNYL 430
Score = 30.3 bits (69), Expect = 1.7
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 20/76 (26%)
Query: 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS------IAKYLT 91
L LNL N I+ G+IP + L L IL+L SS I + ++
Sbjct: 656 PYLFILNLGHNDIS--GSIP--DEVGDLRGLNILDL----------SSNKLDGRIPQAMS 701
Query: 92 DNTTLEDVNLTCNEIS 107
T L +++L+ N +S
Sbjct: 702 ALTMLTEIDLSNNNLS 717
Score = 29.9 bits (68), Expect = 2.2
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 98
L L+L+ N + G I + +L L L + I L++ + L
Sbjct: 369 SLLTLDLSSNNFS--GPILPNLCQNPKNTLQELYLQNNGFT----GKIPPTLSNCSELVS 422
Query: 99 VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134
++L+ N +S G + ++ + +KL+ + + N
Sbjct: 423 LHLSFNYLS--G--TIPSSLGSLSKLRDLKLWLNML 454
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 46.1 bits (110), Expect = 6e-06
Identities = 19/132 (14%), Positives = 43/132 (32%), Gaps = 19/132 (14%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L LE + + + I LS L L+++ + ++ L
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKIPNLS----GLTSLTLLDISHSAHDDSILTK----INTL 135
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
P + ++L + L L+ +N+ + + D + +++ KL
Sbjct: 136 PKVNSIDLSYNGA-----ITDIMPLKTLPELKSLNIQFDGVH-----DY-RGIEDFPKLN 184
Query: 126 QINVSENQFGEE 137
Q+ G +
Sbjct: 185 QLYAFSQTIGGK 196
Score = 41.9 bits (99), Expect = 1e-04
Identities = 17/126 (13%), Positives = 48/126 (38%), Gaps = 20/126 (15%)
Query: 8 KLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPS 67
++ +L ++ + + +T + A ++ L +N+ T +S L +
Sbjct: 42 QMNSLTYITLANINVTD--LTGIEYA----HNIKDLTINNIHATNYNP------ISGLSN 89
Query: 68 LAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQI 127
L L + + S +++ T+L ++++ + + + K+ I
Sbjct: 90 LERLRIMGKDVTSDKIPNLSG----LTSLTLLDISHSAHDDSI----LTKINTLPKVNSI 141
Query: 128 NVSENQ 133
++S N
Sbjct: 142 DLSYNG 147
Score = 41.1 bits (97), Expect = 2e-04
Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 20/141 (14%)
Query: 317 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 376
+ ++ + + + + NL L + +T LS L
Sbjct: 62 IEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKI----PNLSGL 111
Query: 377 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 436
SL +L++ + + I + ++L+ N G + + +K +LK
Sbjct: 112 TSLTLLDISHSAHDDSILTKINT----LPKVNSIDLSYN-----GAITDIMPLKTLPELK 162
Query: 437 QINVSENQFGE-EGVEEMEKL 456
+N+ + + G+E+ KL
Sbjct: 163 SLNIQFDGVHDYRGIEDFPKL 183
Score = 39.2 bits (92), Expect = 0.001
Identities = 12/139 (8%), Positives = 47/139 (33%), Gaps = 23/139 (16%)
Query: 318 KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLP 377
K + Q+ ++ + +L ++ L + +T + +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQM-------NSLTYITLANINVT---DL---TGIEYAH 66
Query: 378 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 437
++ L + + + ++ + LE + + +++ + + T L
Sbjct: 67 NIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDK----IPNLSGLTSLTL 116
Query: 438 INVSENQFGEEGVEEMEKL 456
+++S + + + ++ L
Sbjct: 117 LDISHSAHDDSILTKINTL 135
Score = 37.6 bits (88), Expect = 0.003
Identities = 10/108 (9%), Positives = 39/108 (36%), Gaps = 16/108 (14%)
Query: 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 97
L ++ L + +T + + ++ L + + + ++ + LE
Sbjct: 44 NSLTYITLANINVT---DL---TGIEYAHNIKDLTINNIHATNY------NPISGLSNLE 91
Query: 98 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 145
+ + +++ + + T L +++S + + + ++ L
Sbjct: 92 RLRIMGKDVTSDK----IPNLSGLTSLTLLDISHSAHDDSILTKINTL 135
Score = 34.5 bits (80), Expect = 0.042
Identities = 21/189 (11%), Positives = 51/189 (26%), Gaps = 48/189 (25%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSKALH 280
+ L ++ I + L + L N + GI + K L
Sbjct: 23 KAYLNGLLGQSSTANITEAQMNSL---------TYITLANINVTDLTGIEYAHNI-KDL- 71
Query: 281 DCYESSKKEGSPLA----LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 336
+P++ L+ + ++ L+ L +L +++ +
Sbjct: 72 TINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLS----GLTSLTLLDISHSAHDDS 127
Query: 337 GITALS-------------------DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLP 377
+T ++ + L+ LN+ + + + + P
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD------YRGIEDFP 181
Query: 378 SLAILNLGD 386
L L
Sbjct: 182 KLNQLYAFS 190
Score = 28.4 bits (64), Expect = 3.8
Identities = 15/138 (10%), Positives = 40/138 (28%), Gaps = 35/138 (25%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLS--KALHDCYE 284
L L + + L+ L +L L ++++ + ++ ++
Sbjct: 90 LERLRIMGKDVTSDKIPNLSGLT------SLTLLDISHSAHDDSILTKINTLPKVN---- 139
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
+ ++ + + K L L+ + + +G++
Sbjct: 140 -----------SIDLSYNGAITD------IMPLKTLPELKSLNIQFDGVHDY------RG 176
Query: 345 FEENKNLRHLNLNDNTIT 362
E+ L L TI
Sbjct: 177 IEDFPKLNQLYAFSQTIG 194
Score = 27.2 bits (61), Expect = 9.9
Identities = 8/108 (7%), Positives = 34/108 (31%), Gaps = 19/108 (17%)
Query: 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 97
K + L ++ + + +++ SL + L + + + ++
Sbjct: 23 KAYLNGLLGQSSTA-----NITE--AQMNSLTYITLANINVTDL------TGIEYAHNIK 69
Query: 98 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 145
D+ + + + + L+++ + + + + L
Sbjct: 70 DLTINNIHATN------YNPISGLSNLERLRIMGKDVTSDKIPNLSGL 111
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 47.5 bits (113), Expect = 6e-06
Identities = 34/269 (12%), Positives = 79/269 (29%), Gaps = 37/269 (13%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
++++++ N I V L + L HLNL N I +
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYNFIY---DVK---GQ 187
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
L L+L L + + + ++L N++ + KA++
Sbjct: 188 VVFAKLKTLDLSSNKL-----AFMGPEFQSAAGVTWISLRNNKLV-----LIEKALRFSQ 237
Query: 123 KLKQINVSENQF----GEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEEND 178
L+ ++ N F + + +++ + +E EC+ +
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297
Query: 179 SDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFG 238
+L ++ + H + + + + + AR E+D +
Sbjct: 298 --------DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349
Query: 239 PIGVEGLADLLRSSCCFALEELKLNNNGL 267
+ + A L+ L
Sbjct: 350 TVIDQVTLRKQ------AKITLEQKKKAL 372
Score = 39.1 bits (91), Expect = 0.003
Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 53/219 (24%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 285
+ ELDLS N I LA + LE L L++N L + LS
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTK------LELLNLSSNVLYETLDLESLST-------- 81
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L+ N ++ ++E + N I V +
Sbjct: 82 ---------LRTLDLNNNYVQE---------LLVGPSIETLHAANNNISRVSCSRGQ--- 120
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
+++ L +N IT + + L+L + + + +A
Sbjct: 121 ----GKKNIYLANNKIT---MLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASS---D 169
Query: 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444
TLE +NL N I VK KLK +++S N+
Sbjct: 170 TLEHLNLQYNFIYD------VKGQVVFAKLKTLDLSSNK 202
Score = 39.1 bits (91), Expect = 0.003
Identities = 16/108 (14%), Positives = 41/108 (37%), Gaps = 14/108 (12%)
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 399
A+ + + + + D+++ ++ L+L L A+ +A
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLK---QALAS-LRQSAWNVKELDLSGNPLSQISAADLA- 55
Query: 400 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447
T LE +NL+ N + +++ + L+ ++++ N E
Sbjct: 56 ---PFTKLELLNLSSNVLYE------TLDLESLSTLRTLDLNNNYVQE 94
Score = 38.3 bits (89), Expect = 0.004
Identities = 16/108 (14%), Positives = 42/108 (38%), Gaps = 14/108 (12%)
Query: 29 ALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 88
A+ + + + + + D+++ ++ L+L L A+ +A
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLK---QALAS-LRQSAWNVKELDLSGNPLSQISAADLA- 55
Query: 89 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136
T LE +NL+ N + +++ + L+ ++++ N E
Sbjct: 56 ---PFTKLELLNLSSNVLYE------TLDLESLSTLRTLDLNNNYVQE 94
Score = 38.3 bits (89), Expect = 0.005
Identities = 27/256 (10%), Positives = 69/256 (26%), Gaps = 57/256 (22%)
Query: 220 SLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 279
L G + L ++N + + + L NN + +
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSRGQGK---------KNIYLANNKITMLRDLDEGCRS 144
Query: 280 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV--- 336
++ N ++ A + TLE + + N IY V
Sbjct: 145 R--------------VQYLDLKLNEIDTVN---FAELAASSDTLEHLNLQYNFIYDVKGQ 187
Query: 337 --------------GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 382
+ + F+ + ++L +N + + +AL +L
Sbjct: 188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHF 242
Query: 383 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 442
+L ++ + + N ++ + + G + + T +
Sbjct: 243 DLRGNGFHC---GTLRDFFSKNQRVQ--TVAKQTVKKLTGQNE----EECTVPTLGHYGA 293
Query: 443 NQFGEEGVEEMEKLMK 458
+ ++L+
Sbjct: 294 YCCEDLPAPFADRLIA 309
Score = 34.8 bits (80), Expect = 0.059
Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 49/219 (22%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
R ++D++ ++EL L+ N L ++ + L +
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWN------VKELDLSGNPLS----QISAADLAPFTK- 59
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L++ N L + L TL +++ N +
Sbjct: 60 ---------LELLNLSSNVLYETLD------LESLSTLRTLDLNNNYV---------QEL 95
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
++ L+ +N I+ + S+ + L + + +
Sbjct: 96 LVGPSIETLHAANNNISR---VS----CSRGQGKKNIYLANNKITMLRDLDEGCR----S 144
Query: 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444
++ ++L NEI +L + L+ +N+ N
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDT---LEHLNLQYNF 180
Score = 33.3 bits (76), Expect = 0.16
Identities = 30/231 (12%), Positives = 55/231 (23%), Gaps = 25/231 (10%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN-----GLGITGCKLLSKALH 280
+ + L +N + +E ++ LE L N L K
Sbjct: 215 GVTWISLRNNKL--VLIEKALRFSQN-----LEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
K G + + A +L L+R E
Sbjct: 268 AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER 327
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L E R ++ + + + L L
Sbjct: 328 LECERENQARQREIDALKEQYR---TVIDQ-VTLRKQAKITLEQKKKALDE--------- 374
Query: 401 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 451
N L G ++L A + ++ L+ + ++ E VE
Sbjct: 375 QVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVE 425
Score = 32.5 bits (74), Expect = 0.29
Identities = 22/186 (11%), Positives = 49/186 (26%), Gaps = 14/186 (7%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
A +L L+ E L E + R ++ +
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR---TVIDQ-VT 356
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
+ + L L N L G ++L A + ++
Sbjct: 357 LRKQAKITLEQKKKALDE---------QVSNGRRAHAELDGTLQQAVGQIELQHATEEQS 407
Query: 123 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAE 182
L+ + ++ E VE+ + ++ + + + ++ E D
Sbjct: 408 PLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLA-EENARLKKLNGEADLALA 466
Query: 183 GDNSNL 188
N+ L
Sbjct: 467 SANATL 472
Score = 31.0 bits (70), Expect = 1.0
Identities = 17/128 (13%), Positives = 41/128 (32%), Gaps = 23/128 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+ L TL +++ N + + L+ +N I+ + S+
Sbjct: 76 LESLSTLRTLDLNNNYV---------QELLVGPSIETLHAANNNISR---VS----CSRG 119
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+ L + + + ++ ++L NEI +L + L+
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCR----SRVQYLDLKLNEIDTVNFAELAASSDT---LE 172
Query: 126 QINVSENQ 133
+N+ N
Sbjct: 173 HLNLQYNF 180
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 47.0 bits (112), Expect = 7e-06
Identities = 42/257 (16%), Positives = 84/257 (32%), Gaps = 49/257 (19%)
Query: 206 NSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 265
+ +T Q+ + + L I EG+ L L L+L +N
Sbjct: 27 GKSNVTDTVTQADLD-----GITTLSAFGTGVTTI--EGVQYLN------NLIGLELKDN 73
Query: 266 GL-GITGCKLLSKALH-DCYESSKKEGSPLA----LKVFIAGRNRLENEGAKMLAAVFKK 319
+ + K L+K + + K S +A +K ++ +
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD------VTPLAG 127
Query: 320 LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSL 379
L L+ + + N I ++ NL++L++ + ++ + L+ L L
Sbjct: 128 LSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNAQVS---DLT---PLANLSKL 175
Query: 380 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQIN 439
L D + L L +V+L N+IS V + N + L +
Sbjct: 176 TTLKADDNKISDI------SPLASLPNLIEVHLKNNQISD------VSPLANTSNLFIVT 223
Query: 440 VSENQFGEEGVEEMEKL 456
++ + V L
Sbjct: 224 LTNQTITNQPVFYNNNL 240
Score = 42.4 bits (100), Expect = 2e-04
Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 24/140 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L L+ + + N I ++ L++L++ + ++ + L+ L
Sbjct: 125 LAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNAQVS---DLT---PLANL 172
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
L L D + L L +V+L N+IS V + N + L
Sbjct: 173 SKLTTLKADDNKISDI------SPLASLPNLIEVHLKNNQISD------VSPLANTSNLF 220
Query: 126 QINVSENQFGEEGVEEMEKL 145
+ ++ + V L
Sbjct: 221 IVTLTNQTITNQPVFYNNNL 240
Score = 42.0 bits (99), Expect = 3e-04
Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 24/128 (18%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+ L L +E+ N I + + K+ L L+ N + + A++ L
Sbjct: 59 VQYLNNLIGLELKDNQITDL------APLKNLTKITELELSGNPLK---NVS---AIAGL 106
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
S+ L+L + L + L+ + L N+I+ + + T L+
Sbjct: 107 QSIKTLDLTSTQITD------VTPLAGLSNLQVLYLDLNQITN------ISPLAGLTNLQ 154
Query: 126 QINVSENQ 133
+++ Q
Sbjct: 155 YLSIGNAQ 162
Score = 40.8 bits (96), Expect = 6e-04
Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 25/143 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L++++ +++ I V L+ L L+ N IT I L+ L
Sbjct: 103 IAGLQSIKTLDLTSTQITDV------TPLAGLSNLQVLYLDLNQIT---NIS---PLAGL 150
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L L++G+ + L + + L + N+IS + + + L
Sbjct: 151 TNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDNKISD------ISPLASLPNLI 198
Query: 126 QINVSENQFGE-EGVEEMEKLMK 147
++++ NQ + + L
Sbjct: 199 EVHLKNNQISDVSPLANTSNLFI 221
Score = 39.7 bits (93), Expect = 0.001
Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 25/141 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L + + G+ + + + L L L DN IT + L L
Sbjct: 37 QADLDGITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQIT---DLA---PLKNL 84
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+ L L LK+ A + +++ ++LT +I+ L + L+
Sbjct: 85 TKITELELSGNPLKNVSA------IAGLQSIKTLDLTSTQITDVTPL------AGLSNLQ 132
Query: 126 QINVSENQFGE-EGVEEMEKL 145
+ + NQ + + L
Sbjct: 133 VLYLDLNQITNISPLAGLTNL 153
Score = 32.7 bits (75), Expect = 0.19
Identities = 45/220 (20%), Positives = 69/220 (31%), Gaps = 53/220 (24%)
Query: 206 NSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 265
S Q + + + +S L L L N + LA L L+ L + N
Sbjct: 115 TSTQITDVTPLAGLS-----NLQVLYLDLNQI--TNISPLAGLTN------LQYLSIGNA 161
Query: 266 GL-GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLE 324
+ +T LSK L A N++ + L L
Sbjct: 162 QVSDLTPLANLSK-----------------LTTLKADDNKISDISP------LASLPNLI 198
Query: 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384
V + N I V NL + L + TIT Q + +L + N+
Sbjct: 199 EVHLKNNQISDV------SPLANTSNLFIVTLTNQTIT-------NQPVFYNNNLVVPNV 245
Query: 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLD 424
+ +GA ++DN T NLT N S +
Sbjct: 246 ---VKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVS 282
Score = 29.3 bits (66), Expect = 2.4
Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 16/108 (14%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L L V + N I V L + L + TIT Q +
Sbjct: 191 LASLPNLIEVHLKNNQISDV------SPLANTSNLFIVTLTNQTIT-------NQPVFYN 237
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLD 113
+L + N+ + +GA ++DN T NLT N S +
Sbjct: 238 NNLVVPNV---VKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVS 282
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 46.6 bits (111), Expect = 8e-06
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 23/132 (17%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375
V L L +++ N + +L + L L+++ N +T ++PLG AL
Sbjct: 72 VDGTLPVLGTLDLSHNQL-----QSLPLLGQTLPALTVLDVSFNRLT---SLPLG-ALRG 122
Query: 376 LPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNK 432
L L L L LK+ G LT LE ++L N + + G +
Sbjct: 123 LGELQELYLKGNELKTLPPGL------LTPTPKLEKLSLANNNLTELPAG-----LLNGL 171
Query: 433 TKLKQINVSENQ 444
L + + EN
Sbjct: 172 ENLDTLLLQENS 183
Score = 46.6 bits (111), Expect = 8e-06
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 23/132 (17%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
V L L +++ N + +L + L L+++ N +T ++PLG AL
Sbjct: 72 VDGTLPVLGTLDLSHNQL-----QSLPLLGQTLPALTVLDVSFNRLT---SLPLG-ALRG 122
Query: 65 LPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNK 121
L L L L LK+ G LT LE ++L N + + G +
Sbjct: 123 LGELQELYLKGNELKTLPPGL------LTPTPKLEKLSLANNNLTELPAG-----LLNGL 171
Query: 122 TKLKQINVSENQ 133
L + + EN
Sbjct: 172 ENLDTLLLQENS 183
Score = 34.7 bits (80), Expect = 0.056
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 338 ITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396
+ S L LNL+ +T + LP L L+L L S
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELT---KLQ---VDGTLPVLGTLDLSHNQL-----QS 91
Query: 397 IAKYLTDNTTLEDVNLTCNEIS 418
+ L ++++ N ++
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLT 113
Score = 33.9 bits (78), Expect = 0.078
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 12/82 (14%)
Query: 27 ITALS-DAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85
+ S +L LNL+ +T + LP L L+L L S
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELT---KLQ---VDGTLPVLGTLDLSHNQL-----QS 91
Query: 86 IAKYLTDNTTLEDVNLTCNEIS 107
+ L ++++ N ++
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLT 113
Score = 33.9 bits (78), Expect = 0.090
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 409
+ L+L++N + L L L LNL L L
Sbjct: 32 DTTILHLSENLLY---TFSLA-TLMPYTRLTQLNLDRAELTKLQVDG------TLPVLGT 81
Query: 410 VNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 444
++L+ N++ S+ L ++VS N+
Sbjct: 82 LDLSHNQLQSLPLLGQ------TLPALTVLDVSFNR 111
Score = 27.4 bits (61), Expect = 9.8
Identities = 34/173 (19%), Positives = 55/173 (31%), Gaps = 37/173 (21%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL--------GITGCKLLS 276
RL +L+L + V+G L L L++N L + +L
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQTLPALTVLD 106
Query: 277 KALHDCYESSKKEG---SPLALKVFIAGRNRLENEGAKML-AAVFKKLKTLERVEMPQNG 332
+ +S G L+ N L K L + LE++ + N
Sbjct: 107 --VSFNRLTSLPLGALRGLGELQELYLKGNEL-----KTLPPGLLTPTPKLEKLSLANNN 159
Query: 333 IYHVGITALSD-AFEENKNLRHLNLNDNTITYKGAIPLGQ-ALSKLPSLAILN 383
+ T L +NL L L +N++ IP G LP +
Sbjct: 160 L-----TELPAGLLNGLENLDTLLLQENSLY---TIPKGFFGSHLLPFAFLHG 204
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 46.8 bits (111), Expect = 1e-05
Identities = 43/235 (18%), Positives = 83/235 (35%), Gaps = 59/235 (25%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
++ L+L+D I A +++L + N + L +
Sbjct: 76 QVELLNLNDLQIEEIDTYAFAYAHT------IQKLYMGFNAIR----YLPPHVFQNVP-- 123
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L V + RN L + + +F L + M N + + D F
Sbjct: 124 --------LLTVLVLERNDLSS----LPRGIFHNTPKLTTLSMSNNNLERIE----DDTF 167
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
+ +L++L L+ N +T + L +PSL N+ LL + L
Sbjct: 168 QATTSLQNLQLSSNRLT---HVDLSL----IPSLFHANVSYNLLST---------LAIPI 211
Query: 406 TLEDVNLTCNEIS-VQGG-------LDL-------VKAMKNKTKLKQINVSENQF 445
+E+++ + N I+ V+G L L + N L ++++S N+
Sbjct: 212 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 266
Score = 43.4 bits (102), Expect = 1e-04
Identities = 67/387 (17%), Positives = 115/387 (29%), Gaps = 106/387 (27%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
F T++ + M N I ++ F+ L L L N ++ ++P G
Sbjct: 92 TYAFAYAHTIQKLYMGFNAIRYLP----PHVFQNVPLLTVLVLERNDLS---SLPRG-IF 143
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
P L L++ + L+ + T+L+++ L+ N ++ +DL
Sbjct: 144 HNTPKLTTLSMSNNNLERIEDDT----FQATTSLQNLQLSSNRLTH---VDL----SLIP 192
Query: 123 KLKQINVSENQFGE-EGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDA 181
L NVS N +E+L
Sbjct: 193 SLFHANVSYNLLSTLAIPIAVEEL------------------------------------ 216
Query: 182 EGDNSNLSHNDSNHSHNASNQS----HNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAF 237
+ SHN N N N +T+ + LVE+DLS N
Sbjct: 217 -----DASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP-----GLVEVDLSYNEL 266
Query: 238 GPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKV 297
I + R LE L ++NN L L+ LKV
Sbjct: 267 EKIMYHPFVKMQR------LERLYISNNRL-----VALNLYGQPIP----------TLKV 305
Query: 298 FIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN 357
N L + + + LE + + N I + ++ L++L L+
Sbjct: 306 LDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVTLKLSTHH-------TLKNLTLS 353
Query: 358 DNTITYKGAIPLGQALSKLPSLAILNL 384
N L + A+ +
Sbjct: 354 HNDWDC---NSLRALFRNVARPAVDDA 377
Score = 42.2 bits (99), Expect = 3e-04
Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 16/131 (12%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
AA+ + +E + + I + + AF ++ L + N I Y +P
Sbjct: 68 AALLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRY---LP-PHVF 119
Query: 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 433
+P L +L L L S + L ++++ N + ++ + T
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLER---IE-DDTFQATT 171
Query: 434 KLKQINVSENQ 444
L+ + +S N+
Sbjct: 172 SLQNLQLSSNR 182
Score = 41.8 bits (98), Expect = 5e-04
Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 16/131 (12%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
AA+ + +E + + I + + AF ++ L + N I Y +P
Sbjct: 68 AALLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRY---LP-PHVF 119
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
+P L +L L L S + L ++++ N + ++ + T
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLER---IE-DDTFQATT 171
Query: 123 KLKQINVSENQ 133
L+ + +S N+
Sbjct: 172 SLQNLQLSSNR 182
Score = 41.8 bits (98), Expect = 5e-04
Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 39/172 (22%)
Query: 220 SLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 279
+L + ELD S N+ +++R L LKL +N L T L
Sbjct: 206 TLAIPIAVEELDASHNSI---------NVVRGPVNVELTILKLQHNNLTDTA------WL 250
Query: 280 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 339
+ L N LE K++ F K++ LER+ + N +
Sbjct: 251 LNYP----------GLVEVDLSYNELE----KIMYHPFVKMQRLERLYISNNRL-----V 291
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
AL+ + L+ L+L+ N + + + + + L L L + +
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVT 338
Score = 40.3 bits (94), Expect = 0.001
Identities = 38/231 (16%), Positives = 74/231 (32%), Gaps = 28/231 (12%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L V++ N + + F + ++L L +++N + L +
Sbjct: 250 LLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLVA-----LNLYGQPI 300
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
P+L +L+L L + + LE++ L N I L L LK
Sbjct: 301 PTLKVLDLSHNHLL-----HVERNQPQFDRLENLYLDHNSIVT---LKL-STHHT---LK 348
Query: 126 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDN 185
+ +S N + + L F A ++D + C + Q E +SD +
Sbjct: 349 NLTLSHNDW------DCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLD 402
Query: 186 SNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNA 236
L + ++ + +T N + + L N
Sbjct: 403 RLLQYIALTSVVEKVQRAQGRC-SATDTINSVQSLSHYITQQGGVPLQGNE 452
Score = 39.1 bits (91), Expect = 0.003
Identities = 37/277 (13%), Positives = 82/277 (29%), Gaps = 18/277 (6%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F K++ LE + + N + AL+ + L+ L+L+ N + + + + +
Sbjct: 273 PFVKMQRLERLYISNNRL-----VALNLYGQPIPTLKVLDLSHNHLLH-----VERNQPQ 322
Query: 65 LPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNK 121
L L L + + K L TL + CN + ++ +
Sbjct: 323 FDRLENLYLDHNSIVTLKLSTHHTLKNL----TLSHNDWDCNSLRALFRNVARPAVDDAD 378
Query: 122 TKLKQINVSENQFG-EEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSD 180
K E+ +E + + + ++V + + D + ++ S
Sbjct: 379 QHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSH 438
Query: 181 AEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPI 240
+ + N+ Q N Q L+ ++ +L
Sbjct: 439 YITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKD 498
Query: 241 GVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSK 277
G+ +D L E + +K
Sbjct: 499 GLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAK 535
Score = 33.4 bits (76), Expect = 0.16
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 12/96 (12%)
Query: 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 97
+ + ++T+ +P L + +LNL D ++ + T++
Sbjct: 51 NNQKIVTFKNSTMR---KLPAA-LLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQ 102
Query: 98 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 133
+ + N I L +N L + + N
Sbjct: 103 KLYMGFNAIRY---LP-PHVFQNVPLLTVLVLERND 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 46.7 bits (110), Expect = 1e-05
Identities = 39/257 (15%), Positives = 78/257 (30%), Gaps = 28/257 (10%)
Query: 191 NDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDN--AFGPIGVEGLADL 248
+ + S + T +L +LS +E +L
Sbjct: 315 QHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKEL 374
Query: 249 LRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENE 308
L + + + L + A + + LEN
Sbjct: 375 QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENS 434
Query: 309 GAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIP 368
KM A + L + H +T L E+ + HL+L+ N +
Sbjct: 435 VLKMEYADVRVLH-----------LAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA----- 477
Query: 369 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 428
L AL+ L L +L D L++ + + + L+++ L N + ++
Sbjct: 478 LPPALAALRCLEVLQASDNALEN-----VDG-VANLPRLQELLLCNNRLQ---QSAAIQP 528
Query: 429 MKNKTKLKQINVSENQF 445
+ + +L +N+ N
Sbjct: 529 LVSCPRLVLLNLQGNSL 545
Score = 44.7 bits (105), Expect = 4e-05
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 24 HVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83
H +T L E+ + HL+L+ N + L AL+ L L +L D L+
Sbjct: 450 HKDLTVLCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALE---- 499
Query: 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134
++ + + L+++ L N + ++ + + +L +N+ N
Sbjct: 500 -NVDG-VANLPRLQELLLCNNRLQ---QSAAIQPLVSCPRLVLLNLQGNSL 545
Score = 44.0 bits (103), Expect = 9e-05
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
++L + H+++ N + AL A + L L +DN + + ++ L
Sbjct: 459 LEQLLLVTHLDLSHNRL-----RALPPALAALRCLEVLQASDNALE---NVD---GVANL 507
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 107
P L L L + L+ S+ + L L +NL N +
Sbjct: 508 PRLQELLLCNNRLQQ---SAAIQPLVSCPRLVLLNLQGNSLC 546
Score = 43.6 bits (102), Expect = 1e-04
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 317 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 376
++L + +++ N + AL A + L L +DN + + ++ L
Sbjct: 459 LEQLLLVTHLDLSHNRL-----RALPPALAALRCLEVLQASDNALE---NVD---GVANL 507
Query: 377 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 418
P L L L + L+ S+ + L L +NL N +
Sbjct: 508 PRLQELLLCNNRLQQ---SAAIQPLVSCPRLVLLNLQGNSLC 546
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 45.5 bits (108), Expect = 2e-05
Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
+ ++ L+ + + NGI + D+F +L HL+L+ N ++ +
Sbjct: 69 NSDLQRCVNLQALVLTSNGINTIE----EDSFSSLGSLEHLDLSYNYLS---NLSSS-WF 120
Query: 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI--SVQGGLDLVKAMKN 431
L SL LNL K+ G +S+ +L T L+ + + + +Q
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHL---TKLQILRVGNMDTFTKIQRK-----DFAG 172
Query: 432 KTKLKQINVSENQF 445
T L+++ + +
Sbjct: 173 LTFLEELEIDASDL 186
Score = 44.7 bits (106), Expect = 3e-05
Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 17/133 (12%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F L LE +E+ + + + + + + HL L+ + +
Sbjct: 169 DFAGLTFLEELEIDASDLQSYE----PKSLKSIQNVSHLILHMKQHI---LLLEI-FVDV 220
Query: 65 LPSLAILNLGDCLLKSAGASSI----AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 120
S+ L L D L + S + L T +V +T + ++K +
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-----QVMKLLNQ 275
Query: 121 KTKLKQINVSENQ 133
+ L ++ S NQ
Sbjct: 276 ISGLLELEFSRNQ 288
Score = 44.3 bits (105), Expect = 5e-05
Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 18/134 (13%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
+ ++ L+ + + NGI + D+F L HL+L+ N ++ +
Sbjct: 69 NSDLQRCVNLQALVLTSNGINTIE----EDSFSSLGSLEHLDLSYNYLS---NLSSS-WF 120
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI--SVQGGLDLVKAMKN 120
L SL LNL K+ G +S+ +L T L+ + + + +Q
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHL---TKLQILRVGNMDTFTKIQRK-----DFAG 172
Query: 121 KTKLKQINVSENQF 134
T L+++ + +
Sbjct: 173 LTFLEELEIDASDL 186
Score = 43.2 bits (102), Expect = 1e-04
Identities = 28/190 (14%), Positives = 58/190 (30%), Gaps = 47/190 (24%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCF--------------------ALEELKLNNN 265
L L+L N + +G L L LEEL+++ +
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184
Query: 266 GLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLER 325
L K+L + I + +L ++E
Sbjct: 185 DL----QSYEPKSLKSIQ----------NVSHLILHMKQH----ILLLEIFVDVTSSVEC 226
Query: 326 VEMPQNGIYHVGITALS----DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 381
+E+ + + LS ++ + R++ + D ++ + + L+++ L
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-----VMKLLNQISGLLE 281
Query: 382 LNLGDCLLKS 391
L LKS
Sbjct: 282 LEFSRNQLKS 291
Score = 42.4 bits (100), Expect = 2e-04
Identities = 24/165 (14%), Positives = 47/165 (28%), Gaps = 33/165 (20%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L EL++ + + L + + L L+ LL + D S
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSI------QNVSHLILHMKQH-----ILLLEIFVDVTSS 223
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAV----FKKLKTLERVEMPQNGIYHVGITAL 341
++ L+ L+ K T V++ + +
Sbjct: 224 ---------VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-----FQV 269
Query: 342 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386
+ L L + N + ++P G +L SL + L
Sbjct: 270 MKLLNQISGLLELEFSRNQLK---SVPDG-IFDRLTSLQKIWLHT 310
Score = 41.6 bits (98), Expect = 3e-04
Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 24/135 (17%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 374
F L +LE +++ N + + L S F+ +L LNL N + S
Sbjct: 95 SFSSLGSLEHLDLSYNYL-----SNLSSSWFKPLSSLTFLNLLGNPYK---TLGETSLFS 146
Query: 375 KLPSLAILNLGDC-LLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMK 430
L L IL +G+ T LE++ + +++ S + ++K
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKD------FAGLTFLEELEIDASDLQSYEPK-----SLK 195
Query: 431 NKTKLKQINVSENQF 445
+ + + + Q
Sbjct: 196 SIQNVSHLILHMKQH 210
Score = 41.3 bits (97), Expect = 4e-04
Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 24/135 (17%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQALS 63
F L +LEH+++ N + + L S F+ L LNL N + S
Sbjct: 95 SFSSLGSLEHLDLSYNYL-----SNLSSSWFKPLSSLTFLNLLGNPYK---TLGETSLFS 146
Query: 64 KLPSLAILNLGDC-LLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMK 119
L L IL +G+ T LE++ + +++ S + ++K
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKD------FAGLTFLEELEIDASDLQSYEPK-----SLK 195
Query: 120 NKTKLKQINVSENQF 134
+ + + + Q
Sbjct: 196 SIQNVSHLILHMKQH 210
Score = 37.8 bits (88), Expect = 0.005
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
K T +V++ + + + L L + N + ++P G +L
Sbjct: 250 LIKKFTFRNVKITDESL-----FQVMKLLNQISGLLELEFSRNQLK---SVPDG-IFDRL 300
Query: 66 PSLAILNLGD 75
SL + L
Sbjct: 301 TSLQKIWLHT 310
Score = 33.6 bits (77), Expect = 0.13
Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTL 407
++ L+L++N IT I L + +L L L + + + + +L
Sbjct: 53 AVKSLDLSNNRIT---YISNS-DLQRCVNLQALVLTSNGINTIEEDS------FSSLGSL 102
Query: 408 EDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 445
E ++L+ N + ++ K + L +N+ N +
Sbjct: 103 EHLDLSYNYLSNLSSS-----WFKPLSSLTFLNLLGNPY 136
Score = 32.0 bits (73), Expect = 0.36
Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 40 LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLE 97
++ L+L++N IT I L + +L L L + + + + +LE
Sbjct: 54 VKSLDLSNNRIT---YISNS-DLQRCVNLQALVLTSNGINTIEEDS------FSSLGSLE 103
Query: 98 DVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 134
++L+ N + ++ K + L +N+ N +
Sbjct: 104 HLDLSYNYLSNLSSS-----WFKPLSSLTFLNLLGNPY 136
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 45.4 bits (108), Expect = 2e-05
Identities = 61/416 (14%), Positives = 114/416 (27%), Gaps = 106/416 (25%)
Query: 34 FEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 93
E+ L L+ ++++IT + + KL L L + + L+ N
Sbjct: 38 EEQLATLTSLDCHNSSIT---DMT---GIEKLTGLTKLICTSNNITTL-------DLSQN 84
Query: 94 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 153
T L + N+++ LD+ TKL +N N+ + V + L
Sbjct: 85 TNLTYLACDSNKLT---NLDV----TPLTKLTYLNCDTNKLTKLDVSQNPLLTY------ 131
Query: 154 ALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNT 213
L + L+ D +H+ + + + +
Sbjct: 132 -LNC--------------------------ARNTLTEIDVSHNTQLTELDCHLNKKITKL 164
Query: 214 SNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL---GIT 270
L T LD S N + V L L + N + +
Sbjct: 165 DVTPQTQLTT------LDCSFNKITELDVSQNK---------LLNRLNCDTNNITKLDLN 209
Query: 271 GCKLLSK-ALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP 329
L+ + L F N L KL TL
Sbjct: 210 QNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVST----LSKLTTLH----- 260
Query: 330 QNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 389
+ + N L + + + + L +L+ +
Sbjct: 261 ---CIQTDLLEID--LTHNTQLIYFQAEGCRKIKELDV------THNTQLYLLDCQAAGI 309
Query: 390 KSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ + L+ N L + L E++ LD+ + TKLK ++
Sbjct: 310 -----TELD--LSQNPKLVYLYLNNTELTE---LDV----SHNTKLKSLSCVNAHI 351
Score = 42.0 bits (99), Expect = 4e-04
Identities = 63/445 (14%), Positives = 118/445 (26%), Gaps = 114/445 (25%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
++L TL ++ + I + E+ L L N IT + LS+
Sbjct: 38 EEQLATLTSLDCHNSSITDM------TGIEKLTGLTKLICTSNNIT---TLD----LSQN 84
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L L L + +T T L +N N+++ LD+ L
Sbjct: 85 TNLTYLACDSNKLTN-------LDVTPLTKLTYLNCDTNKLT---KLDV----SQNPLLT 130
Query: 126 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDN 185
+N + N E V +L
Sbjct: 131 YLNCARNTLTEIDVSHNTQL---------------------------------------- 150
Query: 186 SNLSHNDSNHSHNASNQSHNNSNQSHNTSNQ-SHMSLKTGARLVELDLSDNAFGPIGVEG 244
+ L + + + N+ + + + L L+ N + +
Sbjct: 151 TELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQ 210
Query: 245 LADLLRSSCCFALEELKLNNNGL---GITGCKLLSK-ALHDCYESSKKEGSPLALKVFIA 300
L L ++N L +T L+ + + L
Sbjct: 211 NI---------QLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHC 261
Query: 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 360
+ L +L + + I L N L L+
Sbjct: 262 IQTDLLEIDLTHN----TQLIYFQAEGCRK-------IKELD--VTHNTQLYLLDCQAAG 308
Query: 361 ITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 420
IT + LS+ P L L L + L + + ++ NT L+ ++ I
Sbjct: 309 ITE---LD----LSQNPKLVYLYLNNTEL-----TELD--VSHNTKLKSLSCVNAHIQD- 353
Query: 421 GGLDLVKAMKNKTKLKQINVSENQF 445
++ L +E Q
Sbjct: 354 -----FSSVGKIPALNNNFEAEGQT 373
Score = 40.8 bits (96), Expect = 7e-04
Identities = 38/271 (14%), Positives = 81/271 (29%), Gaps = 60/271 (22%)
Query: 205 NNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNN 264
Q+ +T ++ ++ L LD ++ + D+ L +L +
Sbjct: 27 AFEMQATDTISEEQLA-----TLTSLDCHNS--------SITDMTGIEKLTGLTKLICTS 73
Query: 265 NGLG---ITGCKLLSK-ALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL 320
N + ++ L+ A ++ L N+L +
Sbjct: 74 NNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK-------LDVSQN 126
Query: 321 KTLERVEMPQNGIYHVGITAL---------------SDAFEENKNLRHLNLNDNTITYKG 365
L + +N + + ++ L L+ + N IT
Sbjct: 127 PLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT--- 183
Query: 366 AIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDL 425
+ + S+ L LN + L N L ++ + N+++ +D+
Sbjct: 184 ELDV----SQNKLLNRLNCDTNNITKLD-------LNQNIQLTFLDCSSNKLT---EIDV 229
Query: 426 VKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456
T+L + S N E V + KL
Sbjct: 230 ----TPLTQLTYFDCSVNPLTELDVSTLSKL 256
Score = 36.2 bits (84), Expect = 0.021
Identities = 42/225 (18%), Positives = 69/225 (30%), Gaps = 48/225 (21%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSK-AL 279
A V A I E LA L L +N+ + GI L+K
Sbjct: 21 ASEVAAAFEMQATDTISEEQLA---------TLTSLDCHNSSITDMTGIEKLTGLTKLIC 71
Query: 280 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 339
++ L N+L N L L + N + + ++
Sbjct: 72 TSNNITTLDLSQNTNLTYLACDSNKLTN-------LDVTPLTKLTYLNCDTNKLTKLDVS 124
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 399
+N L +LN NT+T I +S L L+ +
Sbjct: 125 -------QNPLLTYLNCARNTLT---EID----VSHNTQLTELDCHLNKKITKLD----- 165
Query: 400 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444
+T T L ++ + N+I+ LD+ L ++N N
Sbjct: 166 -VTPQTQLTTLDCSFNKIT---ELDV----SQNKLLNRLNCDTNN 202
Score = 30.0 bits (68), Expect = 1.7
Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 34 FEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 93
+N KL +L LN+ +T + +S L L+ + ++ + L +N
Sbjct: 314 LSQNPKLVYLYLNNTELT---ELD----VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNN 366
Query: 94 -------TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQIN 128
T+ LT N +++ DL+ N ++ +
Sbjct: 367 FEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 44.5 bits (105), Expect = 5e-05
Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 336 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL-LKSAGA 394
+ ++ L + L++L+L ++ L+K +L LNL C
Sbjct: 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIV----NTLAKNSNLVRLNLSGCSGFSEFAL 160
Query: 395 SSIAKYLTDNTTLEDVNLT-CNEISVQGGLDLVKAMKNKTKLKQINVS 441
++ + L+++NL+ C + + + V + Q+N+S
Sbjct: 161 QTLLSSCSR---LDELNLSWCFDFTEKHVQVAVA--HVSETITQLNLS 203
Score = 43.3 bits (102), Expect = 1e-04
Identities = 40/262 (15%), Positives = 88/262 (33%), Gaps = 39/262 (14%)
Query: 185 NSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244
+ + + + +Q + +Q + R+ +DLS++ + G
Sbjct: 53 DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112
Query: 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304
+ S C L+ L L L L+K S L +++ ++G +
Sbjct: 113 IL-----SQCSKLQNLSLEGLRLSDPIVNTLAK------------NSNL-VRLNLSGCSG 154
Query: 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLND--NTI 361
+ L + +L L + + + A + + LNL+ +
Sbjct: 155 FSEFALQTLLSSCSRLDELN-----LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 209
Query: 362 TYKGAIPLGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLT-CNEISV 419
L + + P+L L+L D +LK+ + L+ ++L+ C +I
Sbjct: 210 QKSD---LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL----NYLQHLSLSRCYDIIP 262
Query: 420 QGGLDLVKAMKNKTKLKQINVS 441
+ + + LK + V
Sbjct: 263 ET----LLELGEIPTLKTLQVF 280
Score = 42.9 bits (101), Expect = 2e-04
Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 25 VGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL-LKSAGA 83
+ ++ L + KL++L+L ++ L+K +L LNL C
Sbjct: 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIV----NTLAKNSNLVRLNLSGCSGFSEFAL 160
Query: 84 SSIAKYLTDNTTLEDVNLT-CNEISVQGGLDLVKAMKNKTKLKQINVS 130
++ + L+++NL+ C + + + V + Q+N+S
Sbjct: 161 QTLLSSCSR---LDELNLSWCFDFTEKHVQVAVA--HVSETITQLNLS 203
Score = 42.6 bits (100), Expect = 2e-04
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 348 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 407
++H++L+++ I L LS+ L L+L L +++AK N+ L
Sbjct: 92 PFRVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNL 144
Query: 408 EDVNLT-CNEISVQGGLDLVKAMKNKTKLKQINVSE-NQFGEEGVEEM 453
+NL+ C+ S L+ + L ++N+S F E+ V+
Sbjct: 145 VRLNLSGCSGFSEFALQTLLSSCSR---LDELNLSWCFDFTEKHVQVA 189
Score = 42.2 bits (99), Expect = 3e-04
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 37 NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 96
+++H++L+++ I L LS+ L L+L L +++AK N+ L
Sbjct: 92 PFRVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNL 144
Query: 97 EDVNLT-CNEISVQGGLDLVKAMKNKTKLKQINVSE-NQFGEEGVEEM 142
+NL+ C+ S L+ + L ++N+S F E+ V+
Sbjct: 145 VRLNLSGCSGFSEFALQTLLSSCSR---LDELNLSWCFDFTEKHVQVA 189
Score = 38.3 bits (89), Expect = 0.004
Identities = 31/180 (17%), Positives = 64/180 (35%), Gaps = 28/180 (15%)
Query: 212 NTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITG 271
S+ +L + LV L+LS + L L S C L+EL L+
Sbjct: 129 RLSDPIVNTLAKNSNLVRLNLSGCSG--FSEFALQTL--LSSCSRLDELNLS-------W 177
Query: 272 CKLLSKALHDCYESSKKEGSPLALKVFIAG-RNRLENEGAKMLAAVFKKLKTLERVEMPQ 330
C + + + S ++ ++G R L+ L+ + ++ L +++
Sbjct: 178 CFDFT---EKHVQVAVAHVSETITQLNLSGYRKNLQKSD---LSTLVRRCPNLVHLDLSD 231
Query: 331 -NGIYHVGITALSDAFEENKNLRHLNLNDNT-ITYKGAIPLGQALSKLPSLAILNLGDCL 388
+ + L+HL+L+ I + L ++P+L L + +
Sbjct: 232 SVMLKNDCFQEFFQL----NYLQHLSLSRCYDIIPETL----LELGEIPTLKTLQVFGIV 283
Score = 31.4 bits (71), Expect = 0.60
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 2 LAAVFKKLKTLEHVEMPQ-NGIYHVGITALSDAFEENKKLRHLNLNDNT-ITYKGAIPLG 59
L+ + ++ L H+++ + + L+HL+L+ I +
Sbjct: 214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL----NYLQHLSLSRCYDIIPETL---- 265
Query: 60 QALSKLPSLAILNLGDCL 77
L ++P+L L + +
Sbjct: 266 LELGEIPTLKTLQVFGIV 283
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 42.7 bits (101), Expect = 1e-04
Identities = 44/219 (20%), Positives = 73/219 (33%), Gaps = 53/219 (24%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 285
+ ELDLS N I LA + LE L L++N L + LS
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTK------LELLNLSSNVLYETLDLESLST-------- 81
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L+ N ++ ++E + N I V +
Sbjct: 82 ---------LRTLDLNNNYVQE---------LLVGPSIETLHAANNNISRVSCSRG---- 119
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
+ +++ L +N IT + + L+L + + + +A
Sbjct: 120 ---QGKKNIYLANNKIT---MLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASS---D 169
Query: 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444
TLE +NL N I VK KLK +++S N+
Sbjct: 170 TLEHLNLQYNFIYD------VKGQVVFAKLKTLDLSSNK 202
Score = 41.1 bits (97), Expect = 4e-04
Identities = 16/108 (14%), Positives = 42/108 (38%), Gaps = 14/108 (12%)
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 399
A+ + + + + D+++ ++ L+L L A+ +A
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLK---QAL-ASLRQSAWNVKELDLSGNPLSQISAADLAP 56
Query: 400 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447
+ T LE +NL+ N + +++ + L+ ++++ N E
Sbjct: 57 F----TKLELLNLSSNVLYE------TLDLESLSTLRTLDLNNNYVQE 94
Score = 41.1 bits (97), Expect = 5e-04
Identities = 31/203 (15%), Positives = 58/203 (28%), Gaps = 39/203 (19%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYE 284
R+ LDL N + LA + LE L L N + + G + +K
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDT-----LEHLNLQYNFIYDVKGQVVFAK------- 192
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
LK N+L + F+ + + + N + + A
Sbjct: 193 ----------LKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKL-----VLIEKA 232
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404
++NL H +L N ++ ++A + + T
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL------TGQNEEECTVP 286
Query: 405 TTLEDVNLTCNEISVQGGLDLVK 427
T C ++ L+
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIA 309
Score = 41.1 bits (97), Expect = 5e-04
Identities = 39/222 (17%), Positives = 70/222 (31%), Gaps = 33/222 (14%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG--ITGCKLLSKALHDCY 283
+L L+LS N L L L L LNNN + + G + + +
Sbjct: 59 KLELLNLSSNVL--YETLDLESLST------LRTLDLNNNYVQELLVGPSIETLHAANNN 110
Query: 284 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
S K N++ + ++ +++ N I V L
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITM----LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-- 164
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
+ L HLNL N I + L L+L L + +
Sbjct: 165 -AASSDTLEHLNLQYNFIY---DVK---GQVVFAKLKTLDLSSNKL-----AFMGPEFQS 212
Query: 404 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ ++L N++ + KA++ L+ ++ N F
Sbjct: 213 AAGVTWISLRNNKLV-----LIEKALRFSQNLEHFDLRGNGF 249
Score = 40.7 bits (96), Expect = 6e-04
Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 42/199 (21%)
Query: 220 SLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 279
L G + L ++N + + + L NN + +
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSRGQ---------GKKNIYLANNKITML--------- 135
Query: 280 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 339
EG ++ N ++ A + TLE + + N IY V
Sbjct: 136 -----RDLDEGCRSRVQYLDLKLNEIDTV---NFAELAASSDTLEHLNLQYNFIYDV--- 184
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 399
L+ L+L+ N + + +G + ++L + L I K
Sbjct: 185 ---KGQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKL-----VLIEK 231
Query: 400 YLTDNTTLEDVNLTCNEIS 418
L + LE +L N
Sbjct: 232 ALRFSQNLEHFDLRGNGFH 250
Score = 40.7 bits (96), Expect = 7e-04
Identities = 16/108 (14%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 29 ALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 88
A+ + + + + + D+++ ++ L+L L A+ +A
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLK---QAL-ASLRQSAWNVKELDLSGNPLSQISAADLAP 56
Query: 89 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136
+ T LE +NL+ N + +++ + L+ ++++ N E
Sbjct: 57 F----TKLELLNLSSNVLYE------TLDLESLSTLRTLDLNNNYVQE 94
Score = 38.0 bits (89), Expect = 0.004
Identities = 17/109 (15%), Positives = 42/109 (38%), Gaps = 15/109 (13%)
Query: 27 ITALSD-AFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85
IT L D ++++L+L N I + + + +L LNL +
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEID---TVNFAELAASSDTLEHLNLQYNFI-----YD 183
Query: 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134
+ L+ ++L+ N+++ + ++ + I++ N+
Sbjct: 184 VKG-QVVFAKLKTLDLSSNKLA-----FMGPEFQSAAGVTWISLRNNKL 226
Score = 36.9 bits (86), Expect = 0.011
Identities = 28/202 (13%), Positives = 61/202 (30%), Gaps = 43/202 (21%)
Query: 214 SNQ-SHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGC 272
+N S +S G + L++N + R ++ L L N +
Sbjct: 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSR------VQYLDLKLNEIDTVNF 161
Query: 273 KLLSKALHDCYESSKKEGSPLALKVFIAGRNRLEN--EGAKMLAAVFKKLKTLERVEMPQ 330
L+ + L+ N + + KLKTL+
Sbjct: 162 AELAASSD-------------TLEHLNLQYNFIYDVKGQVVF-----AKLKTLD------ 197
Query: 331 NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLK 390
+ + + F+ + ++L +N + I +AL +L +L
Sbjct: 198 --LSSNKLAFMGPEFQSAAGVTWISLRNNKLVL---IE--KALRFSQNLEHFDLRGNGFH 250
Query: 391 SAGASSIAKYLTDNTTLEDVNL 412
++ + + N ++ V
Sbjct: 251 C---GTLRDFFSKNQRVQTVAK 269
Score = 35.7 bits (83), Expect = 0.024
Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 27 ITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 86
+ + F+ + ++L +N + I +AL +L +L ++
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVL---IE--KALRFSQNLEHFDLRGNGFHC---GTL 254
Query: 87 AKYLTDNTTLEDVNL 101
+ + N ++ V
Sbjct: 255 RDFFSKNQRVQTVAK 269
Score = 32.3 bits (74), Expect = 0.35
Identities = 17/128 (13%), Positives = 41/128 (32%), Gaps = 23/128 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+ L TL +++ N + + L+ +N I+ + S+
Sbjct: 76 LESLSTLRTLDLNNNYV---------QELLVGPSIETLHAANNNIS---RVS----CSRG 119
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+ L + + + ++ ++L NEI +L + L+
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCR----SRVQYLDLKLNEIDTVNFAELAASSDT---LE 172
Query: 126 QINVSENQ 133
+N+ N
Sbjct: 173 HLNLQYNF 180
Score = 29.2 bits (66), Expect = 2.8
Identities = 12/115 (10%), Positives = 31/115 (26%), Gaps = 11/115 (9%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
+ F+ + + + N + + A ++ L H +L N
Sbjct: 206 MGPEFQSAAGVTWISLRNNKL-----VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 116
++ ++A + + T T C ++ L+
Sbjct: 261 NQRVQTVAKQTVKKL------TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 41.1 bits (97), Expect = 6e-04
Identities = 41/265 (15%), Positives = 74/265 (27%), Gaps = 56/265 (21%)
Query: 186 SNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGL 245
+ + + S N N Q ++ L + EL+L++ +
Sbjct: 34 KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR--QAHELELNNLGLSSL----- 86
Query: 246 ADLLRSSCCFALEELKLNNNGL-----GITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300
LE L + N L K L P L+
Sbjct: 87 -----PELPPHLESLVASCNSLTELPELPQSLKSLLVD---NNNLKALSDLPPLLEYLGV 138
Query: 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 360
N+LE + L+ +++ N +L + +L + +N
Sbjct: 139 SNNQLEK------LPELQNSSFLKIIDVDNN--------SLKKLPDLPPSLEFIAAGNNQ 184
Query: 361 ITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISV 419
+ +P L LP L + + LK L D +LE + N +
Sbjct: 185 LEE---LP---ELQNLPFLTAIYADNNSLKK---------LPDLPLSLESIVAGNNILEE 229
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQ 444
+ ++N L I N
Sbjct: 230 ------LPELQNLPFLTTIYADNNL 248
Score = 31.9 bits (73), Expect = 0.42
Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 30/129 (23%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+ L+ +++ N +L + L + +N + +P L L
Sbjct: 149 LQNSSFLKIIDVDNN--------SLKKLPDLPPSLEFIAAGNNQLEE---LP---ELQNL 194
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 124
P L + + LK L D +LE + N + + ++N L
Sbjct: 195 PFLTAIYADNNSLKK---------LPDLPLSLESIVAGNNILEE------LPELQNLPFL 239
Query: 125 KQINVSENQ 133
I N
Sbjct: 240 TTIYADNNL 248
Score = 29.2 bits (66), Expect = 2.9
Identities = 24/143 (16%), Positives = 55/143 (38%), Gaps = 33/143 (23%)
Query: 303 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT 362
+ E +++ + ++ LE + ++G+++L + +L L + N++T
Sbjct: 56 EQREMAVSRLRDCLDRQAHELE--------LNNLGLSSLPELP---PHLESLVASCNSLT 104
Query: 363 YKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGG 422
+P + L SL + N L LE + ++ N++
Sbjct: 105 ---ELP--ELPQSLKSLLVDNNNLKALSDLPPL-----------LEYLGVSNNQLEK--- 145
Query: 423 LDLVKAMKNKTKLKQINVSENQF 445
+ ++N + LK I+V N
Sbjct: 146 ---LPELQNSSFLKIIDVDNNSL 165
Score = 28.8 bits (65), Expect = 4.8
Identities = 31/170 (18%), Positives = 51/170 (30%), Gaps = 40/170 (23%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-----GITGCKLLSKALHD 281
L + +N E L +L L + +NN L + L+ + D
Sbjct: 217 LESIVAGNNIL-----EELPEL---QNLPFLTTIYADNNLLKTLPDLPPSLEALN--VRD 266
Query: 282 CYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL 341
Y + E P +L N L+ + L L I +L
Sbjct: 267 NYLTDLPE-LPQSLTFLDVSENIFSG-----LSELPPNLYYLN--------ASSNEIRSL 312
Query: 342 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
D +L LN+++N + +P + P L L L
Sbjct: 313 CD---LPPSLEELNVSNNKLI---ELP-----ALPPRLERLIASFNHLAE 351
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 40.0 bits (94), Expect = 9e-04
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 24/142 (16%)
Query: 307 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKG 365
N+ + + + F +L L + + N + L F+E KNL L + DN +
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKL-----QTLPAGIFKELKNLETLWVTDNKLQ--- 98
Query: 366 AIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGG 422
A+P+G +L +LA L L LKS T L ++L NE+ S+ G
Sbjct: 99 ALPIG-VFDQLVNLAELRLDRNQLKSLPPRV------FDSLTKLTYLSLGYNELQSLPKG 151
Query: 423 LDLVKAMKNKTKLKQINVSENQ 444
T LK++ + NQ
Sbjct: 152 -----VFDKLTSLKELRLYNNQ 168
Score = 38.8 bits (91), Expect = 0.003
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 24/135 (17%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALS-DAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
+ F +L L + + N + L F+E K L L + DN + A+P+G
Sbjct: 54 SKAFHRLTKLRLLYLNDNKL-----QTLPAGIFKELKNLETLWVTDNKLQ---ALPIG-V 104
Query: 62 LSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAM 118
+L +LA L L LKS T L ++L NE+ S+ G
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRV------FDSLTKLTYLSLGYNELQSLPKG-----VF 153
Query: 119 KNKTKLKQINVSENQ 133
T LK++ + NQ
Sbjct: 154 DKLTSLKELRLYNNQ 168
Score = 38.0 bits (89), Expect = 0.004
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 24/134 (17%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372
VF +L L + + +N + +L F+ L +L+L N + ++P G
Sbjct: 102 IGVFDQLVNLAELRLDRNQL-----KSLPPRVFDSLTKLTYLSLGYNELQ---SLPKG-V 152
Query: 373 LSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAM 429
KL SL L L + LK GA T L+ + L N++ V G A
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGA------FDKLTELKTLKLDNNQLKRVPEG-----AF 201
Query: 430 KNKTKLKQINVSEN 443
+ KLK + + EN
Sbjct: 202 DSLEKLKMLQLQEN 215
Score = 37.3 bits (87), Expect = 0.007
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 24/134 (17%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
VF +L L + + +N + +L F+ KL +L+L N + ++P G
Sbjct: 102 IGVFDQLVNLAELRLDRNQL-----KSLPPRVFDSLTKLTYLSLGYNELQ---SLPKG-V 152
Query: 62 LSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAM 118
KL SL L L + LK GA T L+ + L N++ V G A
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGA------FDKLTELKTLKLDNNQLKRVPEG-----AF 201
Query: 119 KNKTKLKQINVSEN 132
+ KLK + + EN
Sbjct: 202 DSLEKLKMLQLQEN 215
Score = 30.7 bits (70), Expect = 0.87
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTL 407
+ + L+L N ++ ++P A +L L +L L D L++ AG + L
Sbjct: 38 DTKKLDLQSNKLS---SLPSK-AFHRLTKLRLLYLNDNKLQTLPAGI------FKELKNL 87
Query: 408 EDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 445
E + +T N++ ++ G L ++ + NQ
Sbjct: 88 ETLWVTDNKLQALPIG-----VFDQLVNLAELRLDRNQL 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 38.5 bits (90), Expect = 0.001
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 335 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 394
+VG+T++++ + L+ L L+DN ++ L K P+L LNL +K
Sbjct: 51 NVGLTSIAN-LPKLNKLKKLELSDNRVSG----GLEVLAEKCPNLTHLNLSGNKIKDL-- 103
Query: 395 SSIAKYLTDNTTLEDVNLTCNEIS 418
S + L L+ ++L E++
Sbjct: 104 -STIEPLKKLENLKSLDLFNCEVT 126
Score = 38.5 bits (90), Expect = 0.001
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 13/101 (12%)
Query: 7 KKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLP 66
+ + LE + G+ + + KL+ L L+DN ++ L K P
Sbjct: 39 DEFEELEFLSTINVGLTSIAN------LPKLNKLKKLELSDNRVSG----GLEVLAEKCP 88
Query: 67 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 107
+L LNL +K S + L L+ ++L E++
Sbjct: 89 NLTHLNLSGNKIKDL---STIEPLKKLENLKSLDLFNCEVT 126
Score = 37.3 bits (87), Expect = 0.002
Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 18/127 (14%)
Query: 7 KKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLP 66
+ ++ + + + + L+D F ++L L+ + +T +I L KL
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEF---EELEFLSTINVGLT---SI---ANLPKLN 64
Query: 67 SLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
L L L D + S + L + L +NL+ N+I ++ +K ++N LK
Sbjct: 65 KLKKLELSDNRV-----SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN---LK 116
Query: 126 QINVSEN 132
+++
Sbjct: 117 SLDLFNC 123
Score = 37.3 bits (87), Expect = 0.003
Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 18/127 (14%)
Query: 318 KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLP 377
+ ++ + + + + L+D F + L L+ + +T +I L KL
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEF---EELEFLSTINVGLT---SI---ANLPKLN 64
Query: 378 SLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 436
L L L D + S + L + L +NL+ N+I ++ +K ++N LK
Sbjct: 65 KLKKLELSDNRV-----SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN---LK 116
Query: 437 QINVSEN 443
+++
Sbjct: 117 SLDLFNC 123
Score = 33.9 bits (78), Expect = 0.040
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 26/139 (18%)
Query: 249 LRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENE 308
LR+ ++EL L+N+ + L+ + L+ L +
Sbjct: 11 LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEE-------------LEFLSTINVGLTS- 56
Query: 309 GAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIP 368
A KL L+++E+ N + L E+ NL HLNL+ N I I
Sbjct: 57 -----IANLPKLNKLKKLELSDNRVSGG----LEVLAEKCPNLTHLNLSGNKIKDLSTI- 106
Query: 369 LGQALSKLPSLAILNLGDC 387
+ L KL +L L+L +C
Sbjct: 107 --EPLKKLENLKSLDLFNC 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 39.3 bits (92), Expect = 0.001
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 33/159 (20%)
Query: 229 ELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKK 288
EL L++N F + G+ L L ++ +NN + + A
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQ-----LRKINFSNNKIT----DIEEGAFEGASG---- 82
Query: 289 EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL-SDAFEE 347
+ + NRLEN + +FK L++L+ + + N I T + +D+F
Sbjct: 83 ------VNEILLTSNRLEN----VQHKMFKGLESLKTLMLRSNRI-----TCVGNDSFIG 127
Query: 348 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386
++R L+L DN IT + G A L SL+ LNL
Sbjct: 128 LSSVRLLSLYDNQIT---TVAPG-AFDTLHSLSTLNLLA 162
Score = 36.2 bits (84), Expect = 0.014
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQALS 63
+FK L++L+ + + N I T + +D+F +R L+L DN IT + G A
Sbjct: 100 MFKGLESLKTLMLRSNRI-----TCVGNDSFIGLSSVRLLSLYDNQIT---TVAPG-AFD 150
Query: 64 KLPSLAILNLGD 75
L SL+ LNL
Sbjct: 151 TLHSLSTLNLLA 162
Score = 35.4 bits (82), Expect = 0.022
Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 374
F+ + + + N + + F+ ++L+ L L N IT + +
Sbjct: 76 AFEGASGVNEILLTSNRL-----ENVQHKMFKGLESLKTLMLRSNRIT---CVGND-SFI 126
Query: 375 KLPSLAILNLGDCLLKS 391
L S+ +L+L D + +
Sbjct: 127 GLSSVRLLSLYDNQITT 143
Score = 34.6 bits (80), Expect = 0.038
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQALS 63
F+ + + + N + + F+ + L+ L L N IT + +
Sbjct: 76 AFEGASGVNEILLTSNRL-----ENVQHKMFKGLESLKTLMLRSNRIT---CVGND-SFI 126
Query: 64 KLPSLAILNLGDCLLKS 80
L S+ +L+L D + +
Sbjct: 127 GLSSVRLLSLYDNQITT 143
Score = 31.9 bits (73), Expect = 0.35
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 14/105 (13%)
Query: 342 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 401
+ F++ LR +N ++N IT I G A + + L L++ L
Sbjct: 50 TGIFKKLPQLRKINFSNNKIT---DIEEG-AFEGASGVNEILLTSNRLENVQHKMFKG-L 104
Query: 402 TDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 445
TL L N I V + + ++ +++ +NQ
Sbjct: 105 ESLKTL---MLRSNRITCVGND-----SFIGLSSVRLLSLYDNQI 141
Score = 31.5 bits (72), Expect = 0.45
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 31 SDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90
+ F++ +LR +N ++N IT I G A + + L L++ L
Sbjct: 50 TGIFKKLPQLRKINFSNNKIT---DIEEG-AFEGASGVNEILLTSNRLENVQHKMFKG-L 104
Query: 91 TDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 134
TL L N I V + + ++ +++ +NQ
Sbjct: 105 ESLKTL---MLRSNRITCVGND-----SFIGLSSVRLLSLYDNQI 141
Score = 29.6 bits (67), Expect = 1.7
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDN 48
F L ++ + + N I V AF+ L LNL N
Sbjct: 124 SFIGLSSVRLLSLYDNQITTV----APGAFDTLHSLSTLNLLAN 163
Score = 29.2 bits (66), Expect = 2.3
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
F L ++ + + N I V AF+ +L LNL N
Sbjct: 124 SFIGLSSVRLLSLYDNQITTV----APGAFDTLHSLSTLNLLAN 163
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 38.2 bits (89), Expect = 0.002
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 313 LAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372
L A F L+ L + +VG+ ++S+ + L+ L L++N I L
Sbjct: 44 LTAEFVNLEFLS--------LINVGLISVSN-LPKLPKLKKLELSENRIFGG----LDML 90
Query: 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 418
KLP+L LNL LK S + L L+ ++L E++
Sbjct: 91 AEKLPNLTHLNLSGNKLKDI---STLEPLKKLECLKSLDLFNCEVT 133
Score = 37.8 bits (88), Expect = 0.003
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 13/101 (12%)
Query: 7 KKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLP 66
+ LE + + G+ V + KL+ L L++N I L KLP
Sbjct: 46 AEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LDMLAEKLP 95
Query: 67 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 107
+L LNL LK S + L L+ ++L E++
Sbjct: 96 NLTHLNLSGNKLKDI---STLEPLKKLECLKSLDLFNCEVT 133
Score = 35.1 bits (81), Expect = 0.020
Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 18/145 (12%)
Query: 300 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
+G + ++ + L + + + + I L+ F NL L+L +
Sbjct: 3 SGSSGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEF---VNLEFLSLINV 59
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEIS 418
+ +P KLP L L L + + L + L +NL+ N++
Sbjct: 60 GLISVSNLP------KLPKLKKLELSENRI-----FGGLDMLAEKLPNLTHLNLSGNKLK 108
Query: 419 VQGGLDLVKAMKNKTKLKQINVSEN 443
L+ +K ++ LK +++
Sbjct: 109 DISTLEPLKKLEC---LKSLDLFNC 130
Score = 33.2 bits (76), Expect = 0.090
Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 15/110 (13%)
Query: 24 HVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83
+ E L L+L + + +P KLP L L L + +
Sbjct: 35 KSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP------KLPKLKKLELSENRI----- 83
Query: 84 SSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 132
L + L +NL+ N++ L+ +K ++ LK +++
Sbjct: 84 FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC---LKSLDLFNC 130
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 39.3 bits (91), Expect = 0.002
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 15/81 (18%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375
+ L L + + ++G+ V DAF L LNL+ N + L +
Sbjct: 51 DLRGLGELRNLTIVKSGLRFVA----PDAFHFTPRLSRLNLSFNALES-----LSWKTVQ 101
Query: 376 LPSLAILNLG------DCLLK 390
SL L L C L+
Sbjct: 102 GLSLQELVLSGNPLHCSCALR 122
Score = 39.0 bits (90), Expect = 0.002
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 317 FKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375
+ L + + + L LR+L + + + + + A
Sbjct: 27 LPGAENLTELYIENQQH----LQHLELRDLRGLGELRNLTIVKSGLRF---VAPD-AFHF 78
Query: 376 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 415
P L+ LNL L+S ++ L L C+
Sbjct: 79 TPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCS 118
Score = 38.6 bits (89), Expect = 0.003
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 9/100 (9%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
+ L + + + L +LR+L + + + + + A
Sbjct: 27 LPGAENLTELYIENQQH----LQHLELRDLRGLGELRNLTIVKSGLRF---VAPD-AFHF 78
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 104
P L+ LNL L+S ++ L L C+
Sbjct: 79 TPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCS 118
Score = 38.2 bits (88), Expect = 0.005
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 15/81 (18%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
+ L L ++ + ++G+ V DAF +L LNL+ N + L +
Sbjct: 51 DLRGLGELRNLTIVKSGLRFVA----PDAFHFTPRLSRLNLSFNALES-----LSWKTVQ 101
Query: 65 LPSLAILNLG------DCLLK 79
SL L L C L+
Sbjct: 102 GLSLQELVLSGNPLHCSCALR 122
Score = 35.1 bits (80), Expect = 0.043
Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 11/78 (14%)
Query: 343 DAFEENKNLRHLNL-NDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY- 400
+NL L + N + + L L L L L + L +A
Sbjct: 25 HHLPGAENLTELYIENQQHLQ---HLELR-DLRGLGELRNLTIVKSGL-----RFVAPDA 75
Query: 401 LTDNTTLEDVNLTCNEIS 418
L +NL+ N +
Sbjct: 76 FHFTPRLSRLNLSFNALE 93
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 38.1 bits (89), Expect = 0.002
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 319 KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPS 378
E+VE+ I + K +HL L+ N I I +LS + +
Sbjct: 21 VATEAEKVELHGM---IPPIEKMDATLSTLKACKHLALSTNNIE---KI---SSLSGMEN 71
Query: 379 LAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQI 438
L IL+LG L+K I TLE++ ++ N+I+ G++ L+ +
Sbjct: 72 LRILSLGRNLIK-----KIENLDAVADTLEELWISYNQIASLSGIE------KLVNLRVL 120
Query: 439 NVSENQFGEEGVEEMEKL 456
+S N+ E++KL
Sbjct: 121 YMSNNKITN--WGEIDKL 136
Score = 36.6 bits (85), Expect = 0.007
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 24 HVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83
I + K +HL L+ N I I +LS + +L IL+LG L+K
Sbjct: 34 IPPIEKMDATLSTLKACKHLALSTNNIE---KI---SSLSGMENLRILSLGRNLIK---- 83
Query: 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 143
I TLE++ ++ N+I+ G++ L+ + +S N+ E++
Sbjct: 84 -KIENLDAVADTLEELWISYNQIASLSGIE------KLVNLRVLYMSNNKITN--WGEID 134
Query: 144 KL 145
KL
Sbjct: 135 KL 136
Score = 32.3 bits (74), Expect = 0.21
Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 8 KLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPS 67
++ L + + +N I + + L L ++ N I ++ + KL +
Sbjct: 68 GMENLRILSLGRNLI-----KKIENLDAVADTLEELWISYNQIA---SL---SGIEKLVN 116
Query: 68 LAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 107
L +L + + + + L LED+ L N +
Sbjct: 117 LRVLYMSNNKITNW---GEIDKLAALDKLEDLLLAGNPLY 153
Score = 32.3 bits (74), Expect = 0.23
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 338 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 397
I + + L L ++ N I ++ + KL +L +L + + + +
Sbjct: 82 IKKIENLDAVADTLEELWISYNQIA---SL---SGIEKLVNLRVLYMSNNKITNW---GE 132
Query: 398 AKYLTDNTTLEDVNLTCNEIS 418
L LED+ L N +
Sbjct: 133 IDKLAALDKLEDLLLAGNPLY 153
Score = 29.7 bits (67), Expect = 1.6
Identities = 31/165 (18%), Positives = 50/165 (30%), Gaps = 42/165 (25%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 285
L LS N I L+ + L L L N + I ++ L + + S
Sbjct: 50 CKHLALSTNNIEKI--SSLSGMEN------LRILSLGRNLIKKIENLDAVADTLEELWIS 101
Query: 286 SKKEGSPLALKVFIAGRNRLEN-EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
N++ + G +KL L + M N I + G D
Sbjct: 102 Y----------------NQIASLSG-------IEKLVNLRVLYMSNNKITNWGEI---DK 135
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQA------LSKLPSLAILN 383
L L L N + + + +LP+L L+
Sbjct: 136 LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 38.4 bits (90), Expect = 0.003
Identities = 18/142 (12%), Positives = 44/142 (30%), Gaps = 19/142 (13%)
Query: 256 ALEELKLNN-NGL-----GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEG 309
E L L ++ + A + + S+ ++ + ++ L+
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72
Query: 310 AKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 369
+ A LE + V + D +L+H+ ++ + +P
Sbjct: 73 DLLEDATQPGRVALE--------LRSVPLPQFPDQAFRLSHLQHMTIDAAGLM---ELP- 120
Query: 370 GQALSKLPSLAILNLGDCLLKS 391
+ + L L L L++
Sbjct: 121 -DTMQQFAGLETLTLARNPLRA 141
Score = 33.4 bits (77), Expect = 0.16
Identities = 34/206 (16%), Positives = 58/206 (28%), Gaps = 49/206 (23%)
Query: 197 HNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFG--PIGVEGLADLLRSSCC 254
N++N + + T V L+L P L+
Sbjct: 53 ANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLS-------- 104
Query: 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLA 314
L+ + ++ GL L + L+ RN L L
Sbjct: 105 -HLQHMTIDAAGL-----MELPDTMQQFA----------GLETLTLARNPLRA-----LP 143
Query: 315 AVFKKLKTLER---------VEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKG 365
A L L E+P+ + T S + NL+ L L I
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEP----LASTDASGEHQGLVNLQSLRLEWTGIRS-- 197
Query: 366 AIPLGQALSKLPSLAILNLGDCLLKS 391
L +++ L +L L + + L +
Sbjct: 198 ---LPASIANLQNLKSLKIRNSPLSA 220
Score = 32.6 bits (75), Expect = 0.24
Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 47/171 (27%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRS-SCCFALEELKLNNNGL-----GITGCKLLSKALH 280
L + + GL +L + LE L L N L I L +
Sbjct: 106 LQHMTIDAA--------GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE--- 154
Query: 281 DCYESSKKEGSPLALKVFIAGRNRL----ENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 336
+ I L E + + + L L+ + + GI
Sbjct: 155 ----------------LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--- 195
Query: 337 GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC 387
+L + +NL+ L + ++ ++ LG A+ LP L L+L C
Sbjct: 196 --RSLPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGC 239
Score = 32.2 bits (74), Expect = 0.30
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 22 IYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80
+ V + D L+H+ ++ + +P + + L L L L++
Sbjct: 88 LRSVPLPQFPDQAFRLSHLQHMTIDAAGLM---ELP--DTMQQFAGLETLTLARNPLRA 141
Score = 31.5 bits (72), Expect = 0.64
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 25 VGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80
+ T S + L+ L L I L +++ L +L L + + L +
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRS-----LPASIANLQNLKSLKIRNSPLSA 220
Score = 30.3 bits (69), Expect = 1.1
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
+ + L L+ + + GI +L + + L+ L + ++ ++ LG A
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGI-----RSLPASIANLQNLKSLKIRNSPLSA-----LGPA 224
Query: 62 LSKLPSLAILNLGDC 76
+ LP L L+L C
Sbjct: 225 IHHLPKLEELDLRGC 239
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 38.1 bits (89), Expect = 0.004
Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 33/155 (21%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTIT-------------- 51
+ L+ + + N I + ++ KL L++N N +
Sbjct: 59 MQFFTNLKELHLSHNQISDL------SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLF 112
Query: 52 -YKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG 110
+ +L L +L IL++ + LKS L + LE ++L NEI+ G
Sbjct: 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM------LGFLSKLEVLDLHGNEITNTG 166
Query: 111 GLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 145
GL K+ I+++ + E V+ +L
Sbjct: 167 GL------TRLKKVNWIDLTGQKCVNEPVKYQPEL 195
Score = 38.1 bits (89), Expect = 0.004
Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 25/128 (19%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
K+L +++ + I + + L+ L+L+ N I+ + L L
Sbjct: 37 QKELSGVQNFNGDNSNIQSL------AGMQFFTNLKELHLSHNQIS---DLS---PLKDL 84
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
L L++ LK+ + L + L NE+ ++ + L+
Sbjct: 85 TKLEELSVNRNRLKNLNGIP-------SACLSRLFLDNNELRD------TDSLIHLKNLE 131
Query: 126 QINVSENQ 133
+++ N+
Sbjct: 132 ILSIRNNK 139
Score = 35.8 bits (83), Expect = 0.024
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 349 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 408
N NL ++T + + +L + N + ++S + T L+
Sbjct: 19 ANAVKQNLGKQSVT---DLV---SQKELSGVQNFNGDNSNIQS------LAGMQFFTNLK 66
Query: 409 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444
+++L+ N+IS + +K+ TKL++++V+ N+
Sbjct: 67 ELHLSHNQISD------LSPLKDLTKLEELSVNRNR 96
Score = 35.0 bits (81), Expect = 0.040
Identities = 18/96 (18%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 97
NL ++T + + +L + N + ++S + T L+
Sbjct: 19 ANAVKQNLGKQSVT---DLV---SQKELSGVQNFNGDNSNIQS------LAGMQFFTNLK 66
Query: 98 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 133
+++L+ N+IS + +K+ TKL++++V+ N+
Sbjct: 67 ELHLSHNQISD------LSPLKDLTKLEELSVNRNR 96
Score = 34.6 bits (80), Expect = 0.055
Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 41/201 (20%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG-ITGCKLLSKALH-DC 282
A V+ +L + DL+ ++ +N+ + + G + +
Sbjct: 19 ANAVKQNLGKQ--------SVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHL 70
Query: 283 YESSKKEGSPLA----LKVFIAGRNRLEN-EGAKMLAAVFKKLKTLERVEMPQNGIYHVG 337
+ + SPL L+ RNRL+N G L R+ + N +
Sbjct: 71 SHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA--------CLSRLFLDNNELRDT- 121
Query: 338 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 397
D+ KNL L++ +N + I L L L +L+L + +
Sbjct: 122 -----DSLIHLKNLEILSIRNNKLKS---IV---MLGFLSKLEVLDLHGNEITN------ 164
Query: 398 AKYLTDNTTLEDVNLTCNEIS 418
LT + ++LT +
Sbjct: 165 TGGLTRLKKVNWIDLTGQKCV 185
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 36.9 bits (86), Expect = 0.007
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 27 ITALS-DAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85
I + AF KKLR ++L++N I+ + A L SL L L + S
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQIS---ELAPD-AFQGLRSLNSLVLYGNKITELPKSL 99
Query: 86 IAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 134
+L+ + L N+I ++ A ++ L +++ +N+
Sbjct: 100 FEGL----FSLQLLLLNANKINCLRVD-----AFQDLHNLNLLSLYDNKL 140
Score = 36.9 bits (86), Expect = 0.008
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 15/110 (13%)
Query: 338 ITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396
I + AF K LR ++L++N I+ + A L SL L L + S
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQIS---ELAPD-AFQGLRSLNSLVLYGNKITELPKSL 99
Query: 397 IAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 445
+L+ + L N+I ++ A ++ L +++ +N+
Sbjct: 100 FEGL----FSLQLLLLNANKINCLRVD-----AFQDLHNLNLLSLYDNKL 140
Score = 35.4 bits (82), Expect = 0.020
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
+F+ L +L+ + + N I + DAF++ L L+L DN + I G S
Sbjct: 99 LFEGLFSLQLLLLNANKINCL----RVDAFQDLHNLNLLSLYDNKLQ---TIAKG-TFSP 150
Query: 65 LPSLAILNLGD 75
L ++ ++L
Sbjct: 151 LRAIQTMHLAQ 161
Score = 35.4 bits (82), Expect = 0.023
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375
+F+ L +L+ + + N I + DAF++ NL L+L DN + I G S
Sbjct: 99 LFEGLFSLQLLLLNANKINCL----RVDAFQDLHNLNLLSLYDNKLQ---TIAKG-TFSP 150
Query: 376 LPSLAILNLGD 386
L ++ ++L
Sbjct: 151 LRAIQTMHLAQ 161
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 36.6 bits (85), Expect = 0.007
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 24 HVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83
I L F ++L+ L +N+N I G LP L L L + L
Sbjct: 51 DNEIRKLDG-FPLLRRLKTLLVNNNRICRIG----EGLDQALPDLTELILTNNSLVE--- 102
Query: 84 SSIAKYLTDNTTLEDVNLTCNEIS 107
L +L + + N ++
Sbjct: 103 LGDLDPLASLKSLTYLCILRNPVT 126
Score = 35.8 bits (83), Expect = 0.014
Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 20/128 (15%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+ +++ I + + + ++ +DN I L L
Sbjct: 15 YTNAVRDRELDLRGYKI-----PVIENLGATLDQFDAIDFSDNEIR-----KLDG-FPLL 63
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 124
L L + + + I + L L ++ LT N + G LD + ++K+ L
Sbjct: 64 RRLKTLLVNNNRI-----CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS---L 115
Query: 125 KQINVSEN 132
+ + N
Sbjct: 116 TYLCILRN 123
Score = 34.6 bits (80), Expect = 0.027
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 15/107 (14%)
Query: 338 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 397
I + + ++ +DN I L L L L + + + I
Sbjct: 31 IPVIENLGATLDQFDAIDFSDNEIR-----KLDG-FPLLRRLKTLLVNNNRI-----CRI 79
Query: 398 AKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 443
+ L L ++ LT N + G LD + ++K+ L + + N
Sbjct: 80 GEGLDQALPDLTELILTNNSLVELGDLDPLASLKS---LTYLCILRN 123
Score = 32.7 bits (75), Expect = 0.13
Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 41/170 (24%)
Query: 219 MSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG-ITGCKLLSK 277
R ELDL I E L L + + ++N + + G LL +
Sbjct: 13 AQYTNAVRDRELDLRGYKIPVI--ENLGATLDQ-----FDAIDFSDNEIRKLDGFPLLRR 65
Query: 278 ALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG 337
LK + NR+ ++ + + L L + + N + +G
Sbjct: 66 -----------------LKTLLVNNNRIC----RIGEGLDQALPDLTELILTNNSLVELG 104
Query: 338 ITALSDAFEENKNLRHLNLNDNTIT----YKGAIPLGQALSKLPSLAILN 383
D K+L +L + N +T Y+ + + K+P + +L+
Sbjct: 105 DL---DPLASLKSLTYLCILRNPVTNKKHYRLYV-----IYKVPQVRVLD 146
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 36.9 bits (86), Expect = 0.007
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALS-DAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
+ F L + H+E+ +T + DA +E L+ L + + + P
Sbjct: 73 SHSFYNLSKVTHIEIRNTRN----LTYIDPDALKELPLLKFLGIFNTGLK---MFPDLTK 125
Query: 62 LSKLPSLAILNLGD 75
+ IL + D
Sbjct: 126 VYSTDIFFILEITD 139
Score = 36.5 bits (85), Expect = 0.010
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQA 372
+ F L + +E+ +T + DA +E L+ L + + + P
Sbjct: 73 SHSFYNLSKVTHIEIRNTRN----LTYIDPDALKELPLLKFLGIFNTGLK---MFPDLTK 125
Query: 373 LSKLPSLAILNLGD 386
+ IL + D
Sbjct: 126 VYSTDIFFILEITD 139
Score = 29.6 bits (67), Expect = 1.8
Identities = 6/51 (11%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 338 ITAL-SDAFEENKNLRHLNLNDN-TITYKGAIPLGQALSKLPSLAILNLGD 386
+ + S AF N+ + ++ + T+ + + L + + + +
Sbjct: 43 LRTIPSHAFSNLPNISRIYVSIDVTLQQ---LESH-SFYNLSKVTHIEIRN 89
Score = 29.6 bits (67), Expect = 2.1
Identities = 28/189 (14%), Positives = 56/189 (29%), Gaps = 63/189 (33%)
Query: 226 RLVELDLSDN---------AFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLS 276
++ +++ + A + L L+ L + N GL
Sbjct: 81 KVTHIEIRNTRNLTYIDPDAL-----KELP---------LLKFLGIFNTGL--------- 117
Query: 277 KALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 336
K D +K + + + I + + + + TL+ + NG V
Sbjct: 118 KMFPD---LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK---LYNNGFTSV 171
Query: 337 -------------------GITALS-DAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSK 375
+T + DAF L+++ ++T A+P + L
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT---ALP-SKGLEH 227
Query: 376 LPSLAILNL 384
L L N
Sbjct: 228 LKELIARNT 236
Score = 28.8 bits (65), Expect = 3.7
Identities = 5/51 (9%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 27 ITAL-SDAFEENKKLRHLNLNDN-TITYKGAIPLGQALSKLPSLAILNLGD 75
+ + S AF + + ++ + T+ + + L + + + +
Sbjct: 43 LRTIPSHAFSNLPNISRIYVSIDVTLQQ---LESH-SFYNLSKVTHIEIRN 89
Score = 28.0 bits (63), Expect = 6.0
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 27 ITALS-DAFEE-NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 73
+T + DAF L+++ ++T A+P + L L L N
Sbjct: 192 LTVIDKDAFGGVYSGPSLLDVSQTSVT---ALP-SKGLEHLKELIARNT 236
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 37.6 bits (87), Expect = 0.010
Identities = 40/180 (22%), Positives = 63/180 (35%), Gaps = 39/180 (21%)
Query: 227 LVELDLSDNAFG--PIGVEGLADLLRSSCCF--------ALEELKLNNNGL-----GITG 271
L EL +SDN P L L + L+EL +++N L +
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSE 202
Query: 272 CKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQN 331
L ++ +S P LK I NRL + L + +LK L
Sbjct: 203 LYKLW--AYNNRLTSLPA-LPSGLKELIVSGNRLTS-----LPVLPSELKELM------- 247
Query: 332 GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
+ +T+L L L++ N +T +P ++L L S +NL L
Sbjct: 248 -VSGNRLTSLP---MLPSGLLSLSVYRNQLTR---LP--ESLIHLSSETTVNLEGNPLSE 298
Score = 34.1 bits (78), Expect = 0.11
Identities = 40/240 (16%), Positives = 79/240 (32%), Gaps = 65/240 (27%)
Query: 227 LVELDLSDNAFG--PIGVEGLADLLRSSCCFA--------LEELKLNNNGLGITGCKLLS 276
L +L + N P+ GL +L S A L +L NN L L
Sbjct: 123 LCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQL-----TSLP 177
Query: 277 KALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 336
P L+ N+L + L + +L L Y+
Sbjct: 178 M-------------LPSGLQELSVSDNQLAS-----LPTLPSELYKLW--------AYNN 211
Query: 337 GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396
+T+L L+ L ++ N +T ++P L L + L S
Sbjct: 212 RLTSLP---ALPSGLKELIVSGNRLT---SLP-----VLPSELKELMVSGNRLTSLPMLP 260
Query: 397 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456
+ L +++ N+++ L +++ + + +N+ N E ++ + ++
Sbjct: 261 --------SGLLSLSVYRNQLT-----RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307
Score = 32.6 bits (74), Expect = 0.32
Identities = 33/226 (14%), Positives = 72/226 (31%), Gaps = 63/226 (27%)
Query: 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304
+ +R+ L + +GL ++ + P + + N
Sbjct: 30 VVQKMRACLNNGNAVLNVGESGL-----------------TTLPDCLPAHITTLVIPDNN 72
Query: 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYK 364
L + L A+ +L+TLE + +T+L L + +
Sbjct: 73 LTS-----LPALPPELRTLE--------VSGNQLTSLPVLPPGLLELSIFSNPLTHLP-- 117
Query: 365 GAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV----Q 420
+ L L + L S L++++++ N+++
Sbjct: 118 ---------ALPSGLCKLWIFGNQLTSLPVLP--------PGLQELSVSDNQLASLPALP 160
Query: 421 GGLDLVKAMKNK--------TKLKQINVSENQFGE--EGVEEMEKL 456
L + A N+ + L++++VS+NQ E+ KL
Sbjct: 161 SELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKL 206
Score = 29.5 bits (66), Expect = 2.8
Identities = 31/173 (17%), Positives = 51/173 (29%), Gaps = 42/173 (24%)
Query: 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-----GITGCKLLSKA 278
A + L + DN L L L L+++ N L G LS
Sbjct: 60 PAHITTLVIPDNNL-----TSLPALPPE-----LRTLEVSGNQLTSLPVLPPGLLELS-- 107
Query: 279 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGI 338
+ + P L N+L + L + L+ L + +
Sbjct: 108 IFSNPLTHLPA-LPSGLCKLWIFGNQLTS-----LPVLPPGLQELS--------VSDNQL 153
Query: 339 TALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
+L L L +N +T ++P L L++ D L S
Sbjct: 154 ASLPALPS---ELCKLWAYNNQLT---SLP-----MLPSGLQELSVSDNQLAS 195
Score = 29.5 bits (66), Expect = 3.0
Identities = 18/124 (14%), Positives = 47/124 (37%), Gaps = 24/124 (19%)
Query: 22 IYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 81
Y+ +T+L L+ L ++ N +T ++P L L + L S
Sbjct: 208 AYNNRLTSLP---ALPSGLKELIVSGNRLT---SLP-----VLPSELKELMVSGNRLTSL 256
Query: 82 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE 141
+ L +++ N+++ L +++ + + +N+ N E ++
Sbjct: 257 PMLP--------SGLLSLSVYRNQLT-----RLPESLIHLSSETTVNLEGNPLSERTLQA 303
Query: 142 MEKL 145
+ ++
Sbjct: 304 LREI 307
Score = 29.1 bits (65), Expect = 3.4
Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 41/158 (25%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
L A+ +L+TLE + +T+L +L + +
Sbjct: 76 LPALPPELRTLE--------VSGNQLTSLPVLPPGLLELSIFSNPLTHLP---------- 117
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV----QGGLDLVKA 117
+ L L + L S L++++++ N+++ L + A
Sbjct: 118 -ALPSGLCKLWIFGNQLTSLPVLP--------PGLQELSVSDNQLASLPALPSELCKLWA 168
Query: 118 MKNK--------TKLKQINVSENQFGE--EGVEEMEKL 145
N+ + L++++VS+NQ E+ KL
Sbjct: 169 YNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKL 206
Score = 28.7 bits (64), Expect = 4.6
Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 26/111 (23%)
Query: 26 GITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85
G+T L D + + L + DN +T ++P + P L L + L +S
Sbjct: 51 GLTTLPDCLPAH--ITTLVIPDNNLT---SLP-----ALPPELRTLEVSGNQL-----TS 95
Query: 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136
+ L + + + L ++ + NQ
Sbjct: 96 LPVLPPGLLELSIFSNPLTHLPAL-----------PSGLCKLWIFGNQLTS 135
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 34.7 bits (81), Expect = 0.024
Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 15/113 (13%)
Query: 333 IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 392
+ +T L A E L +T + A+ +LP + L L
Sbjct: 11 EIYQELTRLKAAVGELPEKSKLQEIYQELT---RLK--AAVGELPEKSKLQEIYQEL--- 62
Query: 393 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ + + + + E++ L A+ + ++ +
Sbjct: 63 --TRLKAAVGELPEKSKLQEIYQELT-----RLKAAVGELPEKSKLQEIYQEL 108
Score = 33.6 bits (78), Expect = 0.057
Identities = 15/127 (11%), Positives = 37/127 (29%), Gaps = 20/127 (15%)
Query: 8 KLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPS 67
+L ++ + T L A E + L +T + A+ +LP
Sbjct: 2 ELPEKSKLQEIYQEL-----TRLKAAVGELPEKSKLQEIYQELT---RLK--AAVGELPE 51
Query: 68 LAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQI 127
+ L L + + + + + E++ L A+ + ++
Sbjct: 52 KSKLQEIYQEL-----TRLKAAVGELPEKSKLQEIYQELT-----RLKAAVGELPEKSKL 101
Query: 128 NVSENQF 134
+
Sbjct: 102 QEIYQEL 108
Score = 30.1 bits (69), Expect = 1.0
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 5/54 (9%)
Query: 338 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
+T L A E L +T + A+ +LP + L
Sbjct: 108 LTELKAAVGELPEKSKLQEIYQELT---QLK--AAVGELPDQSKQQQIYQELTD 156
Score = 29.0 bits (66), Expect = 2.2
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 27 ITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80
+T L A E + L +T + A+ +LP + L
Sbjct: 108 LTELKAAVGELPEKSKLQEIYQELT---QLK--AAVGELPDQSKQQQIYQELTD 156
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 35.2 bits (81), Expect = 0.037
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 16/102 (15%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
+ F + E N + + +D F L+++ I +P L
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELP----NDVFHGASGPVILDISRTRIHS---LPSY-GL 222
Query: 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 415
L L + + LK L L + +LT
Sbjct: 223 ENLKKLRARSTYN--LKKLPT------LEKLVALMEASLTYP 256
Score = 34.0 bits (78), Expect = 0.079
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 333 IYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
+ + AF +L + ++ N + I S LP L + + K+
Sbjct: 37 FVLTKLRVIQKGAFSGFGDLEKIEISQNDVL--EVIEAD-VFSNLPKLHEIR----IEKA 89
Query: 392 AGASSI-AKYLTDNTTLEDVNLTCNEIS 418
I + + L+ + ++ I
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIK 117
Score = 34.0 bits (78), Expect = 0.093
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 16/102 (15%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
+ F + E N + + +D F L+++ I +P L
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELP----NDVFHGASGPVILDISRTRIHS---LPSY-GL 222
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 104
L L + + LK L L + +LT
Sbjct: 223 ENLKKLRARSTYN--LKKLPT------LEKLVALMEASLTYP 256
Score = 33.3 bits (76), Expect = 0.14
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 22 IYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80
+ + AF L + ++ N + I S LP L + + K+
Sbjct: 37 FVLTKLRVIQKGAFSGFGDLEKIEISQNDVL--EVIEAD-VFSNLPKLHEIR----IEKA 89
Query: 81 AGASSI-AKYLTDNTTLEDVNLTCNEIS 107
I + + L+ + ++ I
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIK 117
Score = 28.6 bits (64), Expect = 4.7
Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 12/97 (12%)
Query: 349 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 408
+N L + I G A S L + + + + + L +
Sbjct: 30 RNAIELRFVLTKLRV---IQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85
Query: 409 DVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 444
N + + A +N L+ + +S
Sbjct: 86 --IEKANNLLYINPE-----AFQNLPNLQYLLISNTG 115
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 34.8 bits (81), Expect = 0.048
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 349 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 408
L +L + ++ GAIP LS++ +L L+ L +G ++ ++ L
Sbjct: 101 TQLHYLYITHTNVS--GAIP--DFLSQIKTLVTLDFSYNAL--SG--TLPPSISSLPNLV 152
Query: 409 DVNLTCNEIS 418
+ N IS
Sbjct: 153 GITFDGNRIS 162
Score = 34.0 bits (79), Expect = 0.093
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 97
+L +L + ++ GAIP LS++ +L L+ L +G ++ ++ L
Sbjct: 101 TQLHYLYITHTNVS--GAIP--DFLSQIKTLVTLDFSYNAL--SG--TLPPSISSLPNLV 152
Query: 98 DVNLTCNEIS 107
+ N IS
Sbjct: 153 GITFDGNRIS 162
Score = 33.3 bits (77), Expect = 0.16
Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 37/173 (21%)
Query: 226 RLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNGL------GITGCKLLSKA 278
LV LD S NA G + ++ L L + + N + L +
Sbjct: 126 TLVTLDFSYNALSGTLPPS-ISSLPN------LVGITFDGNRISGAIPDSYGSFSKLFTS 178
Query: 279 L--HDCYESSK--KEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334
+ + K + L L RN LE + + +F K +++ + +N
Sbjct: 179 MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKN--- 231
Query: 335 HVGITALSDA---FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384
+L+ +KNL L+L +N I G +P Q L++L L LN+
Sbjct: 232 -----SLAFDLGKVGLSKNLNGLDLRNNRIY--GTLP--QGLTQLKFLHSLNV 275
Score = 30.6 bits (70), Expect = 1.00
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 348 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 407
N NL ++L+ N + G + ++L L A + K + + L
Sbjct: 196 NLNLAFVDLSRNMLE--GDAS--VLFGSDKNTQKIHLAKNSL----AFDLGK-VGLSKNL 246
Query: 408 EDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
++L N I G L + + L +NVS N
Sbjct: 247 NGLDLRNNRIY--GTLP--QGLTQLKFLHSLNVSFNNL 280
Score = 29.0 bits (66), Expect = 3.2
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 13/98 (13%)
Query: 37 NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 96
N L ++L+ N + G + ++L L A + K + + L
Sbjct: 196 NLNLAFVDLSRNMLE--GDAS--VLFGSDKNTQKIHLAKNSL----AFDLGK-VGLSKNL 246
Query: 97 EDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134
++L N I G L + + L +NVS N
Sbjct: 247 NGLDLRNNRIY--GTLP--QGLTQLKFLHSLNVSFNNL 280
Score = 27.5 bits (62), Expect = 8.6
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 349 KNLRHLNL-NDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 389
L L + N + G IP A++KL L L + +
Sbjct: 76 PYLNFLYIGGINNLV--GPIP--PAIAKLTQLHYLYITHTNV 113
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 32.5 bits (74), Expect = 0.11
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386
+ L L N +T A+P G L LP+L +LG
Sbjct: 32 DTTELVLTGNNLT---ALPPG-LLDALPALRTAHLGA 64
Score = 30.9 bits (70), Expect = 0.31
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 40 LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 75
L L N +T A+P G L LP+L +LG
Sbjct: 33 TTELVLTGNNLT---ALPPG-LLDALPALRTAHLGA 64
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 33.8 bits (77), Expect = 0.11
Identities = 35/218 (16%), Positives = 72/218 (33%), Gaps = 53/218 (24%)
Query: 217 SHMSLKT-----GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL---- 267
+ ++L + ++ L+++ NA L +L S LE L +N L
Sbjct: 67 NRLNLSSLPDNLPPQITVLEITQNAL-----ISLPELPAS-----LEYLDACDNRLSTLP 116
Query: 268 -GITGCKLLSKALHDCYESSKKE--GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLE 324
K L D + P L+ A N+L ML + L+ L
Sbjct: 117 ELPASLKHL-----DVDNNQLTMLPELPALLEYINADNNQLT-----MLPELPTSLEVLS 166
Query: 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIP--LGQALSKLPSLAIL 382
+ + +T L + E +L L+++ N + ++P + +
Sbjct: 167 --------VRNNQLTFLPELPE---SLEALDVSTNLLE---SLPAVPVRNHHSEETEIFF 212
Query: 383 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 420
+ + + I + + + L N +S +
Sbjct: 213 RCRENRI-----THIPENILSLDPTCTIILEDNPLSSR 245
Score = 33.4 bits (76), Expect = 0.19
Identities = 40/246 (16%), Positives = 87/246 (35%), Gaps = 63/246 (25%)
Query: 200 SNQSHNNSNQSHNTSNQSHMSLKTG-ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALE 258
+N + N +NT + ++ + + + L LL+
Sbjct: 8 NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENR-----NEAVSLLKECLINQFS 62
Query: 259 ELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFK 318
EL+LN L SS + P + V +N L + L +
Sbjct: 63 ELQLNRLNL-----------------SSLPDNLPPQITVLEITQNALIS-----LPELPA 100
Query: 319 KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPS 378
L+ L+ ++ L + +L+HL++++N +T +P
Sbjct: 101 SLEYLD--------ACDNRLSTLPELPA---SLKHLDVDNNQLTM---LP-----ELPAL 141
Query: 379 LAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQI 438
L +N + L + + + T+LE +++ N+++ L + ++ L+ +
Sbjct: 142 LEYINADNNQL-----TMLPELP---TSLEVLSVRNNQLT-----FLPELPES---LEAL 185
Query: 439 NVSENQ 444
+VS N
Sbjct: 186 DVSTNL 191
Score = 28.4 bits (63), Expect = 6.7
Identities = 30/165 (18%), Positives = 52/165 (31%), Gaps = 38/165 (23%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
A L ++ +N L +L S LE L + NN L L +
Sbjct: 140 ALLEYINADNNQL-----TMLPELPTS-----LEVLSVRNNQL---------TFLPE--- 177
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
P +L+ N LE+ L AV + E E+ IT + +
Sbjct: 178 ------LPESLEALDVSTNLLES-----LPAVPVRNHHSEETEIFFR-CRENRITHIPEN 225
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 389
+ L DN ++ + ++LS+ + +
Sbjct: 226 ILSLDPTCTIILEDNPLSS----RIRESLSQQTAQPDYHGPRIYF 266
Score = 27.6 bits (61), Expect = 9.2
Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 24/115 (20%)
Query: 35 EENKKLRHLNLNDNTITYKGAIP---------------LGQALSKLPSLAILNLGDCLLK 79
E L ++N ++N +T +P L SL L++ LL+
Sbjct: 137 ELPALLEYINADNNQLT---MLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE 193
Query: 80 SAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134
S A + T N I+ + + + + I + +N
Sbjct: 194 SLPA-VPVRNHHSEETEIFFRCRENRIT-----HIPENILSLDPTCTIILEDNPL 242
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 32.7 bits (75), Expect = 0.20
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSD-AFEENKKLRHLNLNDNTITYKGAIPLGQALS 63
K+L L ++ + N + +L + F++ L+ L L +N + ++P G
Sbjct: 80 ALKELTNLTYLILTGNQL-----QSLPNGVFDKLTNLKELVLVENQLQ---SLPDG-VFD 130
Query: 64 KLPSLAILNLGDCLLKS 80
KL +L LNL L+S
Sbjct: 131 KLTNLTYLNLAHNQLQS 147
Score = 30.8 bits (70), Expect = 0.77
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372
VF KL L+ + + +N + +L F++ NL +LNL N + ++P G
Sbjct: 102 NGVFDKLTNLKELVLVENQL-----QSLPDGVFDKLTNLTYLNLAHNQLQ---SLPKG-V 152
Query: 373 LSKLPSLAILNLGDCLLKS 391
KL +L L+L L+S
Sbjct: 153 FDKLTNLTELDLSYNQLQS 171
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 32.7 bits (75), Expect = 0.29
Identities = 19/126 (15%), Positives = 48/126 (38%), Gaps = 13/126 (10%)
Query: 104 NEISVQGGLDLVKAMKNKT------KLKQINVSENQFG-EEG--VEE--MEKLMKSFGMA 152
+E VQ LD KA + +T +L + ++ G + G VE+ ++LM+ G+
Sbjct: 561 SEAVVQAALD--KAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIY 618
Query: 153 AALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHN 212
LV+ G + + ++ + + + + + + +
Sbjct: 619 FKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKL 678
Query: 213 TSNQSH 218
++ ++
Sbjct: 679 STKEAL 684
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 31.6 bits (72), Expect = 0.38
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 307 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKG 365
N+ K+ VF L L+ + + N + AL F+ L L+L N +T
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQL-----GALPVGVFDSLTQLTVLDLGTNQLT--- 101
Query: 366 AIPLGQALSKLPSLAILNLGDCLLKS 391
+P +L L L + L
Sbjct: 102 VLPSA-VFDRLVHLKELFMCCNKLTE 126
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 31.6 bits (72), Expect = 0.40
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 307 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKG 365
A + A F+ L L + + N + LS F++ L L L +N +
Sbjct: 45 TGLATLSDATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLGLANNQLA--- 96
Query: 366 AIPLGQALSKLPSLAILNLGDCLLKS 391
++PLG L L L LG LKS
Sbjct: 97 SLPLG-VFDHLTQLDKLYLGGNQLKS 121
Score = 30.4 bits (69), Expect = 1.1
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 19/112 (16%)
Query: 27 ITALSD-AFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGA 83
+ LSD F KL LNL+ N + + G L L L L + L S G
Sbjct: 47 LATLSDATFRGLTKLTWLNLDYNQLQ---TLSAG-VFDDLTELGTLGLANNQLASLPLGV 102
Query: 84 SSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 134
T L+ + L N++ S+ G TKLK++ ++ NQ
Sbjct: 103 ------FDHLTQLDKLYLGGNQLKSLPSG-----VFDRLTKLKELRLNTNQL 143
Score = 28.1 bits (63), Expect = 5.3
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 14/77 (18%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSD-AFEENKNLRHLNLNDNTITYKGAIPLGQALS 374
VF +L L+ + + N + ++ AF++ NL+ L+L+ N + ++P G A
Sbjct: 126 VFDRLTKLKELRLNTNQL-----QSIPAGAFDKLTNLQTLSLSTNQLQ---SVPHG-AFD 176
Query: 375 KLPSLAILNLG----DC 387
+L L + L DC
Sbjct: 177 RLGKLQTITLFGNQFDC 193
Score = 27.7 bits (62), Expect = 7.8
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 14/77 (18%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSD-AFEENKKLRHLNLNDNTITYKGAIPLGQALS 63
VF +L L+ + + N + ++ AF++ L+ L+L+ N + ++P G A
Sbjct: 126 VFDRLTKLKELRLNTNQL-----QSIPAGAFDKLTNLQTLSLSTNQLQ---SVPHG-AFD 176
Query: 64 KLPSLAILNLG----DC 76
+L L + L DC
Sbjct: 177 RLGKLQTITLFGNQFDC 193
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.44
Identities = 14/66 (21%), Positives = 18/66 (27%), Gaps = 39/66 (59%)
Query: 35 EEN--KKLR-HLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 91
E+ KKL+ L L Y A P+LAI
Sbjct: 18 EKQALKKLQASLKL------YA---D-DSA----PALAI--------------------- 42
Query: 92 DNTTLE 97
T+E
Sbjct: 43 -KATME 47
Score = 29.9 bits (66), Expect = 0.96
Identities = 11/50 (22%), Positives = 13/50 (26%), Gaps = 34/50 (68%)
Query: 371 QALSKL------------PSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 408
QAL KL P+LAI T+E
Sbjct: 20 QALKKLQASLKLYADDSAPALAI----------------------KATME 47
>3h0g_F DNA-directed RNA polymerases I, II, and III subunit rpabc2;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe}
Length = 142
Score = 30.0 bits (67), Expect = 0.81
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 15/115 (13%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQS 217
ED+ +EE +E D G + + S + +S + + +
Sbjct: 6 EDEAFGMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQSGKAVA 65
Query: 218 HMSLKTGARLVE-----------LDLSDNAFGPIGVEGLADLLRSSCCFALEELK 261
T + + L +S NA + +EG D L+ A++EL
Sbjct: 66 KEDRTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQ----IAMKELA 116
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 30.7 bits (68), Expect = 1.1
Identities = 11/62 (17%), Positives = 25/62 (40%)
Query: 156 VLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSN 215
++E + + S EN+S+ SN S + +S+ +N+ +N + +
Sbjct: 293 IIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEEGAKS 352
Query: 216 QS 217
Sbjct: 353 NE 354
Score = 28.8 bits (63), Expect = 3.7
Identities = 5/70 (7%), Positives = 17/70 (24%), Gaps = 1/70 (1%)
Query: 149 FGMAAALVLEDDEGECSDEE-QDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNS 207
+ + D E+ +S +++ N + ++ +
Sbjct: 289 YLGIIIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEE 348
Query: 208 NQSHNTSNQS 217
N +
Sbjct: 349 GAKSNEDPLT 358
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 30.0 bits (68), Expect = 1.3
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 27 ITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80
T + K L ++L++N I+ + + S + L L L L+
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRIS---TLSNQ-SFSNMTQLLTLILSYNRLRC 92
Score = 29.6 bits (67), Expect = 1.6
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 338 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
T + K+L ++L++N I+ + + S + L L L L+
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRIS---TLSNQ-SFSNMTQLLTLILSYNRLRC 92
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 30.3 bits (67), Expect = 1.4
Identities = 6/37 (16%), Positives = 18/37 (48%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSN 194
E+ + + +EE D+ E++D ++ + + +
Sbjct: 374 EEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQ 410
Score = 29.9 bits (66), Expect = 2.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 149 FGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSN 187
G A E+DE E ++E +EE ++ D +G+++
Sbjct: 361 TGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAE 399
Score = 29.1 bits (64), Expect = 3.8
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDNSN 187
+++E + ++E++++ D D E
Sbjct: 372 DEEEADEDEDEEEDDDHGLEDDDGESAEEQ 401
Score = 28.4 bits (62), Expect = 5.2
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQS 210
+ E E +EE DE+ +EE D D ++ + + + QS
Sbjct: 365 LEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPECKQS 417
Score = 28.0 bits (61), Expect = 7.5
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 146 MKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNS 186
+ F AA +++ E +DE++DEE ++++ + + S
Sbjct: 357 VDWFTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGES 397
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo
receptor, structural genomics, NPPSFA; 1.52A
{Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A
2a6x_A
Length = 226
Score = 29.9 bits (67), Expect = 1.5
Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 322 TLERVEMPQNGIYHVGITA----LSDAFE 346
+V+ + + +G +A ++FE
Sbjct: 183 QTRKVKFMGSSPFRIGTSAINDASKESFE 211
Score = 29.1 bits (65), Expect = 2.4
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 11 TLEHVEMPQNGIYHVGITA----LSDAFE 35
V+ + + +G +A ++FE
Sbjct: 183 QTRKVKFMGSSPFRIGTSAINDASKESFE 211
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 29.6 bits (66), Expect = 2.0
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 310 AKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT 362
A L + + + L + + N +Y + +S ++ NL+ LNL+ N +
Sbjct: 159 AATLRIIEENIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELK 209
Score = 29.6 bits (66), Expect = 2.1
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 338 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG 393
L E L LNL++N + + + K P+L ILNL LKS
Sbjct: 159 AATLRIIEENIPELLSLNLSNNRLY--RLDDMSSIVQKAPNLKILNLSGNELKSER 212
Score = 29.2 bits (65), Expect = 2.5
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 8 KLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTIT 51
+ L + + N +Y + +S ++ L+ LNL+ N +
Sbjct: 168 NIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELK 209
Score = 28.8 bits (64), Expect = 3.5
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 27 ITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG 82
L E +L LNL++N + + + K P+L ILNL LKS
Sbjct: 159 AATLRIIEENIPELLSLNLSNNRLY--RLDDMSSIVQKAPNLKILNLSGNELKSER 212
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 29.2 bits (66), Expect = 2.1
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 14/102 (13%)
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404
F +L L L N +T I A + L LG+ +K L
Sbjct: 50 FGRLPHLVKLELKRNQLT---GIEPN-AFEGASHIQELQLGENKIKEISNKMFLG-LHQL 104
Query: 405 TTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 445
TL NL N+I V G + ++ L +N++ N F
Sbjct: 105 KTL---NLYDNQISCVMPG-----SFEHLNSLTSLNLASNPF 138
Score = 28.0 bits (63), Expect = 4.6
Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 14/102 (13%)
Query: 34 FEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 93
F L L L N +T I A + L LG+ +K L
Sbjct: 50 FGRLPHLVKLELKRNQLT---GIEPN-AFEGASHIQELQLGENKIKEISNKMFLG-LHQL 104
Query: 94 TTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 134
TL NL N+I V G + ++ L +N++ N F
Sbjct: 105 KTL---NLYDNQISCVMPG-----SFEHLNSLTSLNLASNPF 138
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 29.3 bits (66), Expect = 2.4
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 307 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKG 365
N + VF +L +L ++ + N + +L + F + +L +LNL+ N +
Sbjct: 38 NSLKSLPNGVFDELTSLTQLYLGGNKL-----QSLPNGVFNKLTSLTYLNLSTNQLQ--- 89
Query: 366 AIPLGQALSKLPSLAILNLGDCLLKS 391
++P G KL L L L L+S
Sbjct: 90 SLPNG-VFDKLTQLKELALNTNQLQS 114
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 29.3 bits (66), Expect = 3.2
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 3/69 (4%)
Query: 132 NQFGEEGVEEMEKLMKSFGMAAALVLEDD--EGECSDEEQDEESEEEN-DSDAEGDNSNL 188
QF +E + + L D+ D E+ + D + +
Sbjct: 406 EQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQVDVDGGQKLISEED 465
Query: 189 SHNDSNHSH 197
+ +H H
Sbjct: 466 LLLEHHHHH 474
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 317
Score = 28.2 bits (62), Expect = 6.3
Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Query: 114 LVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEES 173
++ K L + E V+ +F AA + + +
Sbjct: 241 IINGYKRVLALS-VETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVE 299
Query: 174 EEENDSDAEGD 184
+E +++ D
Sbjct: 300 AKEESEESDED 310
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F
1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F*
1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F
1y77_F* ...
Length = 155
Score = 27.3 bits (60), Expect = 7.0
Identities = 6/59 (10%), Positives = 22/59 (37%)
Query: 158 EDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQ 216
E+ + ++ +D + E +D + + ++ ++ + + N + Q
Sbjct: 5 EEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQ 63
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 27.2 bits (61), Expect = 7.7
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 338 ITALSD-AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGA 394
+ +L F++ L L+L+ N I ++P G KL L IL L + L+S G
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSQNQIQ---SLPDG-VFDKLTKLTILYLHENKLQSLPNGV 95
Query: 395 SSIAKYLTDN-TTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 444
D T L+++ L N++ SV G T L++I + N
Sbjct: 96 -------FDKLTQLKELALDTNQLKSVPDG-----IFDRLTSLQKIWLHTNP 135
>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein,
transferase; 1.60A {Sulfolobus solfataricus} SCOP:
c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A
1je1_A* 1jp7_A 1jpv_A
Length = 236
Score = 27.4 bits (61), Expect = 9.1
Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAF-----EENKKLRHLN 44
F+ L +N Y+VG SDAF E KK
Sbjct: 130 PDFELTNKLVTSFSKRNLKYYVGNVFSSDAFYAEDEEFVKKWSSRG 175
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA
splicing, translation; NMR {Canis lupus familiaris}
Length = 171
Score = 27.1 bits (59), Expect = 9.4
Identities = 10/56 (17%), Positives = 24/56 (42%)
Query: 129 VSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGD 184
++E +F +E + + AL + ++ + D + +E E ++ E D
Sbjct: 116 IAEFRFVPSDKSALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQEND 171
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.128 0.349
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,673,587
Number of extensions: 399742
Number of successful extensions: 3828
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1523
Number of HSP's successfully gapped: 719
Length of query: 472
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 375
Effective length of database: 3,993,456
Effective search space: 1497546000
Effective search space used: 1497546000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (26.4 bits)