RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3611
(472 letters)
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 100 bits (249), Expect = 1e-23
Identities = 75/452 (16%), Positives = 167/452 (36%), Gaps = 7/452 (1%)
Query: 12 LEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 71
++ +++ + L ++ + + L+D +T + AL P+LA L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 72 NLGDCLLKSAGASSIAKYL-TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVS 130
NL L G + + L T + ++ ++L ++ G L ++ L+++++S
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120
Query: 131 ENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSH 190
+N G+ G++ + + + + + + + S D + + +
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180
Query: 191 NDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLR 250
+ ++ Q +S R + ++ A G L
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240
Query: 251 SSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGA 310
L ++ L C + + + +LK N L +EGA
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300
Query: 311 KMLAAVFKKLKTLERVEMPQ-NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 369
++L + + + S +N+ L L +++N + G L
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360
Query: 370 GQALSKL-PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 428
Q L + L +L L DC + + SS+A L N +L +++L+ N + G L LV++
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420
Query: 429 MK-NKTKLKQINVSENQFGEEGVEEMEKLMKS 459
++ L+Q+ + + + EE + ++ L K
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKD 452
Score = 65.8 bits (158), Expect = 4e-12
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 2/138 (1%)
Query: 303 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLNDNTI 361
++V + + L +++ N + G+ L + LR L L D +
Sbjct: 322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 381
Query: 362 TYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDVNLTCNEISVQ 420
+ L L SL L+L + L AG + + + LE + L S +
Sbjct: 382 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 441
Query: 421 GGLDLVKAMKNKTKLKQI 438
L K+K L+ I
Sbjct: 442 MEDRLQALEKDKPSLRVI 459
Score = 65.0 bits (156), Expect = 7e-12
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 2/116 (1%)
Query: 14 HVEMPQNGIYHVGITALSDAFEEN-KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 72
+++ N + G+ L + LR L L D ++ L L SL L+
Sbjct: 344 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 403
Query: 73 LGDCLLKSAGASSIAKYLTDNTT-LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQI 127
L + L AG + + + LE + L S + L K+K L+ I
Sbjct: 404 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 64.6 bits (155), Expect = 8e-12
Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 409
+++ L++ ++ L L L ++ L DC L A I+ L N L +
Sbjct: 3 DIQSLDIQCEELSDARWAEL---LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59
Query: 410 VNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQF 445
+NL NE+ G +++ ++ K++++++
Sbjct: 60 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96
Score = 61.1 bits (146), Expect = 1e-10
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 295 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENK-NLRH 353
L+V + + LAA +L +++ N + GI L ++ + L
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430
Query: 354 LNLNDNTITYKGAIPLGQALSKLPSLAIL 382
L L D + + L PSL ++
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 58.1 bits (138), Expect = 1e-09
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Query: 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALS 63
+ + L + + + ++L+ N LR L+L++N + G + L +++
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422
Query: 64 KLPS-LAILNLGDCLLKSAGASSIAKYLTDNTTL 96
+ L L L D + D +L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456
Score = 56.5 bits (134), Expect = 3e-09
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
A + L+ + V + G+ +S A N L LNL N + G + Q
Sbjct: 19 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 78
Query: 62 L-SKLPSLAILNLGDC 76
L + + L+L +C
Sbjct: 79 LQTPSCKIQKLSLQNC 94
Score = 54.6 bits (129), Expect = 1e-08
Identities = 28/135 (20%), Positives = 44/135 (32%), Gaps = 11/135 (8%)
Query: 189 SHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADL 248
S + + Q NN + + G+ L L L+D LA
Sbjct: 333 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 392
Query: 249 LRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENE 308
L + +L EL L+NN LG G L +++ L+ + E
Sbjct: 393 LLA--NHSLRELDLSNNCLGDAGILQLVESVRQ---------PGCLLEQLVLYDIYWSEE 441
Query: 309 GAKMLAAVFKKLKTL 323
L A+ K +L
Sbjct: 442 MEDRLQALEKDKPSL 456
Score = 51.5 bits (121), Expect = 1e-07
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENK-KLRHLNLNDNTITYKGAIPLGQ 60
LAA +L +++ N + GI L ++ + L L L D + + L
Sbjct: 389 LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 448
Query: 61 ALSKLPSLAIL 71
PSL ++
Sbjct: 449 LEKDKPSLRVI 459
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 63.0 bits (151), Expect = 2e-11
Identities = 61/381 (16%), Positives = 113/381 (29%), Gaps = 44/381 (11%)
Query: 95 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAA 154
++E +L + I+ + + + +K+I +S N G E + + + S
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 155 LVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTS 214
D +E E A L + + + +
Sbjct: 64 AEFSDIFTGRVKDEIPEA--LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 121
Query: 215 NQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKL 274
H+ L + + N L K
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR----SIICGRNRLENGSMKE 177
Query: 275 LSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334
+K + +L + L+ +++ N
Sbjct: 178 WAKTFQSHRLLHTVKMVQ---------NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 228
Query: 335 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 394
H+G +AL+ A + NLR L LND ++ +GA + A SKL
Sbjct: 229 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE----------------- 271
Query: 395 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSENQFGEEG--VE 451
N L+ + L NEI + L + K L + ++ N+F EE V+
Sbjct: 272 ---------NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD 322
Query: 452 EMEKLMKSFGMAAALVLEDDE 472
E+ ++ + G L+D E
Sbjct: 323 EIREVFSTRGRGELDELDDME 343
Score = 58.0 bits (138), Expect = 7e-10
Identities = 47/335 (14%), Positives = 98/335 (29%), Gaps = 24/335 (7%)
Query: 67 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 126
S+ +L + + S+ L ++ +++++ L+ N I + L + + +K L+
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 127 INVSENQ---FGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEG 183
S+ +E E + L+++ L E +
Sbjct: 64 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123
Query: 184 DNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243
++ L +N A + + + + N ++
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL-------RSIICGRNRLENGSMK 176
Query: 244 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303
+ + L + + L + ++ LKV N
Sbjct: 177 -----EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE------LKVLDLQDN 225
Query: 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD--AFEENKNLRHLNLNDNTI 361
+ G+ LA K L + + + G A+ D + EN L+ L L N I
Sbjct: 226 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 285
Query: 362 TYKGAIPLGQAL-SKLPSLAILNLGDCLLKSAGAS 395
L + K+P L L L
Sbjct: 286 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 320
Score = 57.2 bits (136), Expect = 1e-09
Identities = 55/358 (15%), Positives = 107/358 (29%), Gaps = 28/358 (7%)
Query: 11 TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 70
++E + + I ++ E+ ++ + L+ NTI + A L + ++ L I
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 71 LNLGDCLLKSAGA------SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 124
D + + L L V L+ N L+ + T L
Sbjct: 64 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123
Query: 125 KQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGD 184
+ + + N G + ++ + ++ + + N +
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKA--------KNAPPLRSIICGRNRLENGSM 175
Query: 185 NSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244
S+ + N + L L LDL DN F +G
Sbjct: 176 KEWAKTFQSHRLLHTVKMVQNGIRPEGI-EHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 234
Query: 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304
LA L EL LN+ L G + A + L+ N
Sbjct: 235 LAI--ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL--------ENIGLQTLRLQYNE 284
Query: 305 LENEGAKMLA-AVFKKLKTLERVEMPQNGIYHVG--ITALSDAFEENKNLRHLNLNDN 359
+E + + L + +K+ L +E+ N + + + F L+D
Sbjct: 285 IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 342
Score = 54.9 bits (130), Expect = 7e-09
Identities = 51/353 (14%), Positives = 102/353 (28%), Gaps = 32/353 (9%)
Query: 40 LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV 99
+ +L + IT + + L + S+ + L + + A +++ + LE
Sbjct: 5 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64
Query: 100 NLTCNEISVQGGL------DLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 153
+ L++A+ KL + +S+N FG E + +
Sbjct: 65 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124
Query: 154 ALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNT 213
L L + Q + + + N+ N S +
Sbjct: 125 HLYLHN----NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180
Query: 214 SNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCK 273
+ QSH L T + + L E L + +
Sbjct: 181 TFQSHRLLHTVKMVQNGIRPEG-----------------IEHLLLEGLAYCQELKVLDLQ 223
Query: 274 LLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK--TLERVEMPQN 331
+ + S L+ L GA + F KL+ L+ + + N
Sbjct: 224 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 283
Query: 332 GIYHVGITALSDAFEEN-KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383
I + L +E +L L LN N + + + + ++ S
Sbjct: 284 EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV--DEIREVFSTRGRG 334
Score = 51.8 bits (122), Expect = 7e-08
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 72 NLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQIN 128
L DCLL + GA+++ + +N L+ + L NEI + L + K L +
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308
Query: 129 VSENQFGEEG--VEEMEKLMKSFGMAAALVLEDDE 161
++ N+F EE V+E+ ++ + G L+D E
Sbjct: 309 LNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 343
Score = 45.6 bits (106), Expect = 7e-06
Identities = 50/313 (15%), Positives = 88/313 (28%), Gaps = 34/313 (10%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAI----- 56
+ AV + +++ + + N I LS+ K L +D
Sbjct: 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82
Query: 57 -PLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGL--- 112
L QAL K P L + L D + +L+ +T LE + L N + Q G
Sbjct: 83 RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142
Query: 113 ------DLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSD 166
+ K KN L+ I N+ ++E K +S + + + +
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202
Query: 167 EEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQS------------HNNSNQSHNTS 214
E + + + + S + + +
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262
Query: 215 NQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGC-- 272
S L L L N V L ++ L L+LN N
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP-DLLFLELNGNRFSEEDDVV 321
Query: 273 ----KLLSKALHD 281
++ S
Sbjct: 322 DEIREVFSTRGRG 334
Score = 34.1 bits (76), Expect = 0.032
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 16/105 (15%)
Query: 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLA 314
F++E L + + K + L + ++K + N + E A+ L+
Sbjct: 3 FSIEGKSLKLDAITTEDEKSVFAVLLEDD----------SVKEIVLSGNTIGTEAARWLS 52
Query: 315 AVFKKLKTLERVEMPQNGIYHVG------ITALSDAFEENKNLRH 353
K LE E V + L A + L
Sbjct: 53 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 97
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 167
Score = 56.1 bits (134), Expect = 5e-10
Identities = 21/170 (12%), Positives = 58/170 (34%), Gaps = 17/170 (10%)
Query: 242 VEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300
VE + LR L+E+ +NN + + L +A + + F
Sbjct: 3 VESCINRLREDDT-DLKEVNINNMKRVSKERIRSLIEAACNSKHI----------EKFSL 51
Query: 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 360
+ + A+ L + + +L + + N + + L + +++ ++
Sbjct: 52 ANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 111
Query: 361 ITY---KGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 407
+ + + + A+ + SL + + + +++ L N
Sbjct: 112 QSVLGNQVEMDMMMAIEENESLLRVGISFASM--EARHRVSEALERNYER 159
Score = 43.0 bits (100), Expect = 2e-05
Identities = 14/122 (11%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Query: 29 ALSDAFEENKKLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87
++ E++ L+ +N+N+ ++ + L +A + +L + + + A +
Sbjct: 6 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI 65
Query: 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMK 147
+ + + +L +N+ N ++ + L+++ + + + G + +M
Sbjct: 66 ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM 125
Query: 148 SF 149
+
Sbjct: 126 AI 127
Score = 38.8 bits (89), Expect = 4e-04
Identities = 7/86 (8%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 14 HVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITY---KGAIPLGQALSKLPSLAI 70
+ + N + + L + + + ++ + + + + A+ + SL
Sbjct: 76 VLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLR 135
Query: 71 LNLGDCLLKSAGASSIAKYLTDNTTL 96
+ + + +++ L N
Sbjct: 136 VGISFASM--EARHRVSEALERNYER 159
Score = 38.0 bits (87), Expect = 9e-04
Identities = 19/151 (12%), Positives = 50/151 (33%), Gaps = 16/151 (10%)
Query: 221 LKTGARLVELDLSD-NAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 279
+ L E+++++ + L + +S E+ L N + + + L + +
Sbjct: 11 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHI--EKFSLANTAISDSEARGLIELI 68
Query: 280 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG-- 337
+V N L E L +++ + +G
Sbjct: 69 ETSPSL----------RVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 118
Query: 338 -ITALSDAFEENKNLRHLNLNDNTITYKGAI 367
+ A EEN++L + ++ ++ + +
Sbjct: 119 VEMDMMMAIEENESLLRVGISFASMEARHRV 149
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 166
Score = 41.6 bits (96), Expect = 5e-05
Identities = 35/172 (20%), Positives = 60/172 (34%), Gaps = 16/172 (9%)
Query: 239 PIGVEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLSKALHDCYESSKKEGSPLALKV 297
VE ++++ LEE+ LNN + + K ++AL +K
Sbjct: 2 STDVEETLKRIQNNDP-DLEEVNLNNIMNIPVPTLKACAEALKTN----------TYVKK 50
Query: 298 FIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLN-- 355
F R + A LA + K TL+ + + N I GI AL +A + N +L L
Sbjct: 51 FSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRID 110
Query: 356 LNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 407
+ + + L K +L + + +N L
Sbjct: 111 NQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNNDL 160
Score = 35.0 bits (79), Expect = 0.008
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Query: 29 ALSDAFEENKKLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87
L + L +NLN+ I +AL + ++ A ++A
Sbjct: 8 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA 67
Query: 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN--QFGEEGVEEMEKL 145
+ L N TL+ +N+ N IS G L LV+A+++ T L ++ + G E+ +
Sbjct: 68 EMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM 127
Query: 146 MKS 148
++
Sbjct: 128 LEK 130
Score = 33.5 bits (75), Expect = 0.027
Identities = 13/142 (9%), Positives = 36/142 (25%), Gaps = 11/142 (7%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSC-CFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L E++L++ I V L + +++ + L++ L
Sbjct: 19 LEEVNLNNI--MNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 76
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
+ L + R++ + + +++
Sbjct: 77 KSLN------VESNFISGSGILALVEALQSNTSL--IELRIDNQSQPLGNNVEMEIANML 128
Query: 346 EENKNLRHLNLNDNTITYKGAI 367
E+N L + +
Sbjct: 129 EKNTTLLKFGYHFTQQGPRLRA 150
Score = 28.5 bits (62), Expect = 1.1
Identities = 5/58 (8%), Positives = 14/58 (24%), Gaps = 2/58 (3%)
Query: 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 96
++ + + + L K +L + + +N L
Sbjct: 105 IELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNNDL 160
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 40.8 bits (94), Expect = 3e-04
Identities = 60/386 (15%), Positives = 113/386 (29%), Gaps = 50/386 (12%)
Query: 7 KKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLP 66
L + ++ + GI + D E L +N ++N +T PL L
Sbjct: 41 TDLDQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLT--DITPLKN----LT 88
Query: 67 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 126
L + + + + + LT T + + + L+ ++ N
Sbjct: 89 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS 148
Query: 127 INVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNS 186
+ +K L D + +S +N
Sbjct: 149 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN- 207
Query: 187 NLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLA 246
+S ++ N NQ + + ++ L +LDL++N ++
Sbjct: 208 QISDITPLGILTNLDELSLNGNQLKDIGTLASLT-----NLTDLDLANNQ--------IS 254
Query: 247 DLLRSSCCFALEELKLNNNGL-GITGCKLLSKAL-----HDCYESSKKEGSPLALKVFIA 300
+L S L ELKL N + I+ L+ + E + L
Sbjct: 255 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314
Query: 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 360
N + + L L+R+ N + V + N+ L+ N
Sbjct: 315 YFNNISDISP------VSSLTKLQRLFFANNKVSDV------SSLANLTNINWLSAGHNQ 362
Query: 361 ITYKGAIPLGQALSKLPSLAILNLGD 386
I+ PL L + L L D
Sbjct: 363 IS--DLTPLAN----LTRITQLGLND 382
Score = 32.3 bits (72), Expect = 0.11
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 12/70 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L L+ + N + V + + L+ N I+ PL L
Sbjct: 325 VSSLTKLQRLFFANNKVSDV------SSLANLTNINWLSAGHNQIS--DLTPLAN----L 372
Query: 66 PSLAILNLGD 75
+ L L D
Sbjct: 373 TRITQLGLND 382
Score = 26.5 bits (57), Expect = 8.1
Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 6/46 (13%)
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
+ + L + I + L +L +N + L
Sbjct: 41 TDLDQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLTD 80
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 37.3 bits (85), Expect = 0.003
Identities = 42/263 (15%), Positives = 82/263 (31%), Gaps = 28/263 (10%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
FK LK L + + N I + AF KL L L+ N + +P +
Sbjct: 50 DFKNLKNLHTLILINNKISKI----SPGAFAPLVKLERLYLSKNQLKE---LPEKMPKTL 102
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 124
N + KS + L +E ++ G A + KL
Sbjct: 103 QELRVHENEITKVRKS-----VFNGLNQMIVVELGTNPLKSSGIENG-----AFQGMKKL 152
Query: 125 KQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGD 184
I +++ L + L L+ + D S + ++ A+
Sbjct: 153 SYIRIADTNITTIPQGLPPSLTE-------LHLDG----NKITKVDAASLKGLNNLAKLG 201
Query: 185 NSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244
S S + ++ A+ + ++N + L + + L +N IG
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 261
Query: 245 LADLLRSSCCFALEELKLNNNGL 267
++ + + L +N +
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPV 284
Score = 31.2 bits (69), Expect = 0.27
Identities = 26/208 (12%), Positives = 53/208 (25%), Gaps = 18/208 (8%)
Query: 184 DNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243
+N S + +S + + + +L + ++D I
Sbjct: 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI--- 165
Query: 244 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303
+L EL L+ N + L + +A
Sbjct: 166 ------PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219
Query: 304 RLE-----NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD--AFEENKNLRHLNL 356
L N + K ++ V + N I +G + + ++L
Sbjct: 220 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 279
Query: 357 NDNTITYKGAIPLGQALSKLPSLAILNL 384
N + Y P + A + L
Sbjct: 280 FSNPVQYWEIQP--STFRCVYVRAAVQL 305
Score = 26.9 bits (58), Expect = 5.7
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 289 EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEEN 348
+ P + N++ ++ FK LK L + + N I + AF
Sbjct: 27 KDLPPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKI----SPGAFAPL 78
Query: 349 KNLRHLNLNDNTIT 362
L L L+ N +
Sbjct: 79 VKLERLYLSKNQLK 92
Score = 26.5 bits (57), Expect = 7.0
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 8 KLKTLEHVEMPQNGIYHVGITALSD--AFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
K ++ V + N I +G + ++L N + Y P +
Sbjct: 240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP--STFRCV 297
Query: 66 PSLAILNL 73
A + L
Sbjct: 298 YVRAAVQL 305
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 35.7 bits (80), Expect = 0.009
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 343 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384
D F L+++ I ++P L L L +
Sbjct: 195 DVFHGASGPVILDISRTRIH---SLPSY-GLENLKKLRARST 232
Score = 34.1 bits (76), Expect = 0.023
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 32 DAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 73
D F L+++ I ++P L L L +
Sbjct: 195 DVFHGASGPVILDISRTRIH---SLPSY-GLENLKKLRARST 232
Score = 32.6 bits (72), Expect = 0.090
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 18/64 (28%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
VF +++ + I+ + S E KKLR + + L K
Sbjct: 196 VFHGASGPVILDISRTRIHSLP----SYGLENLKKLRARSTYN--------------LKK 237
Query: 65 LPSL 68
LP+L
Sbjct: 238 LPTL 241
Score = 31.4 bits (69), Expect = 0.17
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 18/64 (28%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375
VF +++ + I+ + S E K LR + + L K
Sbjct: 196 VFHGASGPVILDISRTRIHSLP----SYGLENLKKLRARSTYN--------------LKK 237
Query: 376 LPSL 379
LP+L
Sbjct: 238 LPTL 241
Score = 30.3 bits (66), Expect = 0.48
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 190 HNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADL- 248
N + N + N + ++N + + V LD+S + GL +L
Sbjct: 166 QEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 225
Query: 249 -LRSSCCFALEEL 260
LR+ + L++L
Sbjct: 226 KLRARSTYNLKKL 238
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 35.5 bits (80), Expect = 0.010
Identities = 32/231 (13%), Positives = 74/231 (32%), Gaps = 21/231 (9%)
Query: 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 98
+++H++L+++ I L LS+ L L+L L +++AK N+ L
Sbjct: 47 RVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNLVR 99
Query: 99 VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLE 158
+NL+ + L + + ++L ++N+S E + L L
Sbjct: 100 LNLSGCSGFSEFALQ--TLLSSCSRLDELNLSWCFDFTE-KHVQVAVAHVSETITQLNLS 156
Query: 159 DDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNT--SNQ 216
+ + + ++ + + + S +
Sbjct: 157 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 216
Query: 217 SHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL 267
+ + L L L + + L L + L L++N +
Sbjct: 217 TLLELGEIPTLKTLQVFGI----VPDGTLQLLKEA-----LPHLQINCSHF 258
Score = 32.4 bits (72), Expect = 0.097
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 210 SHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGI 269
+ +Q + R+ +DLS++ + G+ S C L+ L L L
Sbjct: 31 PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL-----SQCSKLQNLSLEGLRLSD 85
Query: 270 TGCKLLSK 277
L+K
Sbjct: 86 PIVNTLAK 93
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 34.3 bits (77), Expect = 0.023
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383
L + K L LN++ N + G IP G L + A N
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLC--GEIPQGGNLQRFDVSAYAN 300
Score = 33.6 bits (75), Expect = 0.049
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 30 LSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 72
L + K L LN++ N + G IP G L + A N
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLC--GEIPQGGNLQRFDVSAYAN 300
Score = 28.9 bits (63), Expect = 1.4
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 348 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 389
+KNL L+L +N I G +P Q L++L L LN+ L
Sbjct: 243 SKNLNGLDLRNNRIY--GTLP--QGLTQLKFLHSLNVSFNNL 280
Score = 27.8 bits (60), Expect = 2.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 37 NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 78
+K L L+L +N I G +P Q L++L L LN+ L
Sbjct: 243 SKNLNGLDLRNNRIY--GTLP--QGLTQLKFLHSLNVSFNNL 280
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 31.5 bits (70), Expect = 0.16
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 343 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386
NL ++L +N I+ P L+ +L I+ L +
Sbjct: 189 SPLASLPNLIEVHLKNNQIS--DVSP----LANTSNLFIVTLTN 226
Score = 31.2 bits (69), Expect = 0.23
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 12/70 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L L ++ N I + L ++L +N I+ P L+
Sbjct: 169 LANLSKLTTLKADDNKISDI------SPLASLPNLIEVHLKNNQIS--DVSP----LANT 216
Query: 66 PSLAILNLGD 75
+L I+ L +
Sbjct: 217 SNLFIVTLTN 226
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 30.6 bits (68), Expect = 0.25
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 338 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
L E L LNL++N + + + K P+L ILNL LKS
Sbjct: 54 AATLRIIEENIPELLSLNLSNNRLYRLDDMS--SIVQKAPNLKILNLSGNELKS 105
Score = 29.4 bits (65), Expect = 0.56
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 27 ITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80
L E +L LNL++N + + + K P+L ILNL LKS
Sbjct: 54 AATLRIIEENIPELLSLNLSNNRLYRLDDMS--SIVQKAPNLKILNLSGNELKS 105
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 30.4 bits (67), Expect = 0.36
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384
L++L L+ N I+ + AL+ L +L +L L
Sbjct: 173 PLAGLTKLQNLYLSKNHIS---DLR---ALAGLKNLDVLEL 207
Score = 29.6 bits (65), Expect = 0.64
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 33 AFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 73
KL++L L+ N I+ + AL+ L +L +L L
Sbjct: 173 PLAGLTKLQNLYLSKNHIS---DLR---ALAGLKNLDVLEL 207
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 30.6 bits (67), Expect = 0.39
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 16/74 (21%)
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404
+ +L LN+++N + +P + P L L L + + +
Sbjct: 280 CDLPPSLEELNVSNNKLI---ELP-----ALPPRLERLIASFNHL-----AEVPELP--- 323
Query: 405 TTLEDVNLTCNEIS 418
L+ +++ N +
Sbjct: 324 QNLKQLHVEYNPLR 337
Score = 29.8 bits (65), Expect = 0.64
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 16/75 (21%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+LE + + N + L +L L + N + +P
Sbjct: 280 CDLPPSLEELNVSNNKL-----IELPALP---PRLERLIASFNHLA---EVP-----ELP 323
Query: 66 PSLAILNLGDCLLKS 80
+L L++ L+
Sbjct: 324 QNLKQLHVEYNPLRE 338
Score = 29.0 bits (63), Expect = 1.2
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 190 HNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLL 249
+ S + + ++ N + +SN+ L EL++S+N L L
Sbjct: 249 LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-----IELPALP 303
Query: 250 RSSCCFALEELKLNNNGL 267
LE L + N L
Sbjct: 304 PR-----LERLIASFNHL 316
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 29.3 bits (65), Expect = 0.43
Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 335 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 394
H +T L E+ + HL+L+ N + AL+ L L +L D L++
Sbjct: 7 HKDLTVLC-HLEQLLLVTHLDLSHNRLRAL-----PPALAALRCLEVLQASDNALENVDG 60
Query: 395 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 448
+ L+++ L N + ++ + + +L +N+ N +E
Sbjct: 61 V------ANLPRLQELLLCNNRLQ---QSAAIQPLVSCPRLVLLNLQGNSLCQE 105
Score = 28.1 bits (62), Expect = 0.89
Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 24 HVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83
H +T L E+ + HL+L+ N + AL+ L L +L D L++
Sbjct: 7 HKDLTVLC-HLEQLLLVTHLDLSHNRLRAL-----PPALAALRCLEVLQASDNALENVDG 60
Query: 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 137
+ L+++ L N + ++ + + +L +N+ N +E
Sbjct: 61 V------ANLPRLQELLLCNNRLQ---QSAAIQPLVSCPRLVLLNLQGNSLCQE 105
Score = 27.4 bits (60), Expect = 1.7
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 343 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 382
L LNL N++ + I + LPS++ +
Sbjct: 84 QPLVSCPRLVLLNLQGNSLCQEEGIQ-ERLAEMLPSVSSI 122
Score = 27.0 bits (59), Expect = 2.8
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 32 DAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 71
+L LNL N++ + I + LPS++ +
Sbjct: 84 QPLVSCPRLVLLNLQGNSLCQEEGIQ-ERLAEMLPSVSSI 122
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 29.7 bits (65), Expect = 0.62
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 349 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC 387
K+ L+L++N + L L L LNL
Sbjct: 31 KDTTILHLSENLLY---TFSLA-TLMPYTRLTQLNLDRA 65
Score = 27.8 bits (60), Expect = 2.7
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 307 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
N ++ A + L+ L+ + + +N +Y + F + L L+ N
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGN 205
Score = 27.8 bits (60), Expect = 3.1
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDN 48
+ L+ L+ + + +N +Y + F + L L+ N
Sbjct: 167 LLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGN 205
Score = 27.4 bits (59), Expect = 3.6
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 342 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386
+ +NL L L +N++ IP + L L
Sbjct: 165 AGLLNGLENLDTLLLQENSLYT---IP--KGFFGSHLLPFAFLHG 204
Score = 27.4 bits (59), Expect = 4.3
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 26 GITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC 76
+TAL ++ L+L++N + L L L LNL
Sbjct: 21 NLTALPPDLPKD--TTILHLSENLLY---TFSLA-TLMPYTRLTQLNLDRA 65
Score = 26.6 bits (57), Expect = 6.3
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 31 SDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 75
+ + L L L +N++ IP + L L
Sbjct: 165 AGLLNGLENLDTLLLQENSLYT---IP--KGFFGSHLLPFAFLHG 204
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 29.1 bits (64), Expect = 0.76
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 31 SDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 78
+ + + R L+L I + + L ++ D +
Sbjct: 11 AAQYTNAVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEI 53
Score = 28.4 bits (62), Expect = 1.3
Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 5/48 (10%)
Query: 342 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 389
+ + R L+L I + + L ++ D +
Sbjct: 11 AAQYTNAVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEI 53
Score = 26.1 bits (56), Expect = 6.9
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 338 ITALSDAFEENKNLRHLNLNDNTITY 363
I + + ++ +DN I
Sbjct: 30 IPVIENLGATLDQFDAIDFSDNEIRK 55
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 27.5 bits (61), Expect = 1.9
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 157 LEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTS 214
+ D+E ++ D+ E+E D E + + +NQ T+
Sbjct: 1 MSDNEDNFDGDDFDDVEEDEGLDDLENAEE----EGQENVEILPSGERPQANQKRITT 54
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 27.0 bits (58), Expect = 4.1
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 338 ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC 387
I + K +HL L+ N I I +LS + +L IL+LG
Sbjct: 37 IEKMDATLSTLKACKHLALSTNNIE---KIS---SLSGMENLRILSLGRN 80
Score = 25.8 bits (55), Expect = 9.6
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 27 ITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC 76
I + K +HL L+ N I I +LS + +L IL+LG
Sbjct: 37 IEKMDATLSTLKACKHLALSTNNIE---KIS---SLSGMENLRILSLGRN 80
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 26.6 bits (57), Expect = 5.4
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 343 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 382
L L+++ N ++ I L+KL +L L
Sbjct: 166 KPLANLTTLERLDISSNKVS---DIS---VLAKLTNLESL 199
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 98
Score = 25.4 bits (55), Expect = 6.3
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 97 EDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 144
+NL + +D V+ + T + + F + G E+
Sbjct: 11 HGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILA 58
Score = 25.4 bits (55), Expect = 6.3
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 408 EDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 455
+NL + +D V+ + T + + F + G E+
Sbjct: 11 HGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILA 58
>d1rzna_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related
factor A (PrfA) {Bacillus subtilis [TaxId: 1423]}
Length = 165
Score = 25.8 bits (57), Expect = 8.9
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 116 KAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 161
K KNKT N ++Q +E M+++ G+ ++ D+
Sbjct: 70 KETKNKTSFPLQNFHDHQ-----IEHMKQVKAQDGICFVIISAFDQ 110
Score = 25.8 bits (57), Expect = 8.9
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 427 KAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 472
K KNKT N ++Q +E M+++ G+ ++ D+
Sbjct: 70 KETKNKTSFPLQNFHDHQ-----IEHMKQVKAQDGICFVIISAFDQ 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.128 0.349
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,536,080
Number of extensions: 67401
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 122
Length of query: 472
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 383
Effective length of database: 1,185,626
Effective search space: 454094758
Effective search space used: 454094758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.4 bits)