Query psy3614
Match_columns 209
No_of_seqs 179 out of 515
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 21:05:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4304|consensus 100.0 6E-45 1.3E-49 320.3 17.2 129 21-149 21-152 (250)
2 PF07527 Hairy_orange: Hairy O 99.5 3.1E-14 6.8E-19 94.5 3.8 43 103-145 1-43 (43)
3 smart00511 ORANGE Orange domai 99.4 1.3E-13 2.8E-18 92.0 4.4 44 103-146 1-44 (45)
4 PF00010 HLH: Helix-loop-helix 99.4 2.1E-13 4.6E-18 93.4 2.9 55 32-89 1-55 (55)
5 cd00083 HLH Helix-loop-helix d 99.3 2.8E-12 6E-17 87.8 3.7 56 31-91 3-58 (60)
6 smart00353 HLH helix loop heli 99.2 3.8E-11 8.2E-16 80.9 4.2 50 38-92 2-51 (53)
7 KOG1318|consensus 98.8 3.9E-09 8.4E-14 99.3 3.8 60 29-92 230-289 (411)
8 KOG3561|consensus 98.7 1.7E-08 3.6E-13 101.5 5.8 57 32-92 20-76 (803)
9 KOG1319|consensus 98.2 1.1E-06 2.4E-11 76.0 4.3 85 30-115 60-151 (229)
10 KOG3560|consensus 97.8 1E-05 2.3E-10 78.9 2.1 44 40-87 33-76 (712)
11 KOG0561|consensus 97.0 0.00081 1.8E-08 62.0 4.8 49 38-92 66-114 (373)
12 KOG2483|consensus 96.6 0.0021 4.5E-08 57.0 3.6 59 29-92 56-114 (232)
13 KOG2588|consensus 96.1 0.0041 8.9E-08 64.1 3.0 55 31-92 275-329 (953)
14 KOG3960|consensus 95.9 0.0096 2.1E-07 53.8 4.3 54 31-90 117-170 (284)
15 KOG4029|consensus 95.3 0.0063 1.4E-07 52.8 0.6 52 37-92 114-165 (228)
16 KOG3558|consensus 94.8 0.021 4.5E-07 57.6 3.0 79 6-88 13-98 (768)
17 PLN03217 transcription factor 94.4 0.092 2E-06 40.5 5.0 45 45-91 20-64 (93)
18 KOG3910|consensus 91.6 0.37 8E-06 47.5 5.7 62 29-94 523-584 (632)
19 KOG3559|consensus 87.1 0.46 9.9E-06 46.1 2.6 45 39-87 8-52 (598)
20 KOG4395|consensus 71.2 5.5 0.00012 36.4 3.9 55 31-90 173-227 (285)
21 PF12644 DUF3782: Protein of u 57.6 47 0.001 22.9 5.8 16 101-116 47-62 (64)
22 PF15392 Joubert: Joubert synd 41.0 23 0.0005 33.3 2.6 35 26-60 50-84 (329)
23 cd04382 RhoGAP_MgcRacGAP RhoGA 35.6 1.8E+02 0.0039 24.5 7.1 41 113-154 109-149 (193)
24 KOG3898|consensus 33.2 23 0.00051 31.6 1.4 48 40-92 80-127 (254)
25 KOG1954|consensus 29.5 2E+02 0.0043 28.4 7.0 76 25-107 285-361 (532)
26 COG1458 Predicted DNA-binding 28.6 1.9E+02 0.0042 25.7 6.2 36 43-82 104-139 (221)
27 smart00394 RIIa RIIalpha, Regu 28.5 1.5E+02 0.0032 18.6 4.2 17 75-91 20-36 (38)
28 PF08504 RunxI: Runx inhibitio 27.6 26 0.00056 27.7 0.6 9 201-209 93-101 (101)
29 PF02197 RIIa: Regulatory subu 26.2 1.8E+02 0.004 18.6 4.7 18 75-92 20-37 (38)
30 PF08269 Cache_2: Cache domain 25.3 1.4E+02 0.003 21.7 4.1 48 40-89 5-52 (95)
31 PF06412 TraD: Conjugal transf 25.1 2.2E+02 0.0048 20.2 5.0 43 41-90 4-46 (65)
32 KOG3390|consensus 23.8 3.9E+02 0.0085 21.6 8.3 73 37-119 18-94 (120)
33 PF11819 DUF3338: Domain of un 23.3 99 0.0021 25.7 3.3 56 6-61 3-62 (138)
34 KOG4168|consensus 22.8 69 0.0015 27.0 2.3 29 39-80 64-92 (149)
35 KOG4447|consensus 21.0 29 0.00063 29.7 -0.3 54 30-89 76-129 (173)
36 KOG4571|consensus 20.8 3E+02 0.0064 25.7 6.1 17 73-89 269-285 (294)
37 KOG3003|consensus 20.3 1.8E+02 0.0039 26.3 4.5 41 43-88 103-143 (236)
38 PRK15322 invasion protein OrgB 20.2 2.1E+02 0.0045 25.4 4.8 35 102-136 45-79 (210)
39 PF10410 DnaB_bind: DnaB-helic 20.2 2.3E+02 0.0049 18.6 4.1 35 107-143 19-53 (59)
40 cd04393 RhoGAP_FAM13A1a RhoGAP 20.1 3.2E+02 0.0069 22.6 5.8 40 113-152 113-152 (189)
No 1
>KOG4304|consensus
Probab=100.00 E-value=6e-45 Score=320.32 Aligned_cols=129 Identities=53% Similarity=0.843 Sum_probs=117.0
Q ss_pred ccCccchhhhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhhhccCCC--
Q psy3614 21 QLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNP-- 98 (209)
Q Consensus 21 ~~~~~s~t~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~~~~~~~-- 98 (209)
.....++++++||++||+||||||||||+||++||.||++++++|+..++||||||||||||+|||+|++.+......
T Consensus 21 ~~~~~~~~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~~~~~ 100 (250)
T KOG4304|consen 21 SDERSSKTRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAAQAAP 100 (250)
T ss_pred CCCcchhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccccccccc
Confidence 344678999999999999999999999999999999999999999888999999999999999999999877543322
Q ss_pred -cccHHhhhhhHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhhhcccccCC
Q psy3614 99 -VTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMDKIS 149 (209)
Q Consensus 99 -~~~~~~fraGf~~C~~EVsrfLs~~~gvd~~~~~rLlsHL~~~l~~~~~~~ 149 (209)
....+.|++||++|++||++||+.++|+|..++++||+||+.+++++++..
T Consensus 101 ~~~~~d~f~~Gf~ec~~EVsr~ls~~~~~~~~~~~~L~~HL~~~~~~~~~~~ 152 (250)
T KOG4304|consen 101 AALPVDSFRAGFRECAAEVSRYLSICPGMDAAKGTRLLTHLQAHLAQLEQST 152 (250)
T ss_pred ccccchhhhccHHHHHHHHHHHHhhCCCCChHHHhHHHHHHHHHhhcccCcc
Confidence 345789999999999999999999999999999999999999999998743
No 2
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=99.48 E-value=3.1e-14 Score=94.47 Aligned_cols=43 Identities=42% Similarity=0.807 Sum_probs=36.6
Q ss_pred HhhhhhHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhhhccc
Q psy3614 103 DRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEM 145 (209)
Q Consensus 103 ~~fraGf~~C~~EVsrfLs~~~gvd~~~~~rLlsHL~~~l~~~ 145 (209)
++|++||++|++||++||+..+++++.++.+||+||+++++++
T Consensus 1 ~~y~~Gy~~C~~Ev~~fL~~~~~~~~~~~~rLl~HL~~~~~~~ 43 (43)
T PF07527_consen 1 QKYRAGYSECLNEVSRFLSSVEGVDPGVRARLLSHLQSCLNQI 43 (43)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTS---THHHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhcCC
Confidence 4799999999999999999999999999999999999998764
No 3
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=99.43 E-value=1.3e-13 Score=92.02 Aligned_cols=44 Identities=43% Similarity=0.788 Sum_probs=41.2
Q ss_pred HhhhhhHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhhhcccc
Q psy3614 103 DRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMD 146 (209)
Q Consensus 103 ~~fraGf~~C~~EVsrfLs~~~gvd~~~~~rLlsHL~~~l~~~~ 146 (209)
++|++||++|++||++||++.+++++.++.+||+||+.+++++.
T Consensus 1 ~~y~~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~~~~~ 44 (45)
T smart00511 1 SSFRSGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLNQLL 44 (45)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhhc
Confidence 47999999999999999999999999999999999999998764
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.38 E-value=2.1e-13 Score=93.36 Aligned_cols=55 Identities=35% Similarity=0.615 Sum_probs=48.9
Q ss_pred hhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Q psy3614 32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMR 89 (209)
Q Consensus 32 RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq 89 (209)
||..|...||+||++||.++++|+.+||.+. .....|++|++||+.||+||+.||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~---~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCS---AGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHH---CCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchh---ccccccCCHHHHHHHHHHHHHHhC
Confidence 5778899999999999999999999999964 223489999999999999999986
No 5
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.28 E-value=2.8e-12 Score=87.85 Aligned_cols=56 Identities=36% Similarity=0.526 Sum_probs=50.7
Q ss_pred hhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHh
Q psy3614 31 YRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91 (209)
Q Consensus 31 ~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~ 91 (209)
.+|..+...||+||++||.+|++|+.+||... ...|++|++||++||+||+.|+..
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~-----~~~k~~k~~iL~~a~~yI~~L~~~ 58 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLP-----PSKKLSKAEILRKAVDYIKSLQEL 58 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999999999874 248999999999999999999864
No 6
>smart00353 HLH helix loop helix domain.
Probab=99.15 E-value=3.8e-11 Score=80.92 Aligned_cols=50 Identities=38% Similarity=0.614 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 38 l~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
+.||+||++||.+|++|+.+||... ...|++|++||++||+|++.|+.+.
T Consensus 2 ~~Er~RR~~~n~~~~~L~~lip~~~-----~~~k~~k~~iL~~ai~yi~~L~~~~ 51 (53)
T smart00353 2 ARERRRRRKINEAFDELRSLLPTLP-----NNKKLSKAEILRLAIEYIKSLQEEL 51 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999763 2389999999999999999998653
No 7
>KOG1318|consensus
Probab=98.78 E-value=3.9e-09 Score=99.29 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=53.5
Q ss_pred hhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 29 YQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 29 ~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
+..||..|.++|||||+.||+.|.+|..|||++. ....|++|..||..+|+|++.|++..
T Consensus 230 dr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~----~~~~~~nKgtILk~s~dYIr~Lqq~~ 289 (411)
T KOG1318|consen 230 DRRKRDNHNEVERRRRENINDRIKELGQLIPKCN----SEDMKSNKGTILKASCDYIRELQQTL 289 (411)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCC----cchhhcccchhhHHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999994 33489999999999999999998654
No 8
>KOG3561|consensus
Probab=98.71 E-value=1.7e-08 Score=101.54 Aligned_cols=57 Identities=25% Similarity=0.521 Sum_probs=51.4
Q ss_pred hhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 32 RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
.+..+..+||||||.+|..|+||.+|||.+.. -..|+||..||++||+|||.++...
T Consensus 20 ~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~----~~RK~DK~tVLr~aV~~lr~~k~~~ 76 (803)
T KOG3561|consen 20 KRENRSEIEKRRRDQMNKYIEELSEMVPTNAS----LSRKPDKLTVLRMAVDHLRLIKEQE 76 (803)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhcchh----cccCchHHHHHHHHHHHHHHHhhhh
Confidence 46778899999999999999999999999964 3499999999999999999998763
No 9
>KOG1319|consensus
Probab=98.24 E-value=1.1e-06 Score=75.99 Aligned_cols=85 Identities=26% Similarity=0.353 Sum_probs=63.1
Q ss_pred hhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhhhccCC-------CcccH
Q psy3614 30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASN-------PVTDA 102 (209)
Q Consensus 30 ~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~~~~~~-------~~~~~ 102 (209)
..||..|.--|++|||-||...+.|+.|||.+...+.. .-|+.||-||..|++|+..|+.+..-... .+.+.
T Consensus 60 ~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~-g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL 138 (229)
T KOG1319|consen 60 DRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSI-GQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTAL 138 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999999999999999999665432 24999999999999999999876432111 12223
Q ss_pred HhhhhhHHHHHHH
Q psy3614 103 DRFRAGFTTCANE 115 (209)
Q Consensus 103 ~~fraGf~~C~~E 115 (209)
+--..||-+-+.-
T Consensus 139 ~iIk~~YEqM~~~ 151 (229)
T KOG1319|consen 139 KIIKVNYEQMVKA 151 (229)
T ss_pred HHHHHHHHHHHHh
Confidence 4455677665543
No 10
>KOG3560|consensus
Probab=97.78 E-value=1e-05 Score=78.89 Aligned_cols=44 Identities=34% Similarity=0.526 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Q psy3614 40 ERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQK 87 (209)
Q Consensus 40 EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~ 87 (209)
-||-|||+|..||.|.+|||-. .+.++||||..||.++|.||+.
T Consensus 33 SKRHRdRLNaELD~lAsLLPfp----qdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFP----QDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCC----HHHHhhhhhhhhhhhhHHHHHH
Confidence 4999999999999999999865 3356999999999999999985
No 11
>KOG0561|consensus
Probab=97.04 E-value=0.00081 Score=62.01 Aligned_cols=49 Identities=31% Similarity=0.442 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 38 l~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
-=||||=.-||..|..||.|||..- | .||.||.||+.|-+|+..|.+++
T Consensus 66 sNERRRMQSINAGFqsLr~LlPr~e---G---EKLSKAAILQQTa~yI~~Le~~K 114 (373)
T KOG0561|consen 66 SNERRRMQSINAGFQSLRALLPRKE---G---EKLSKAAILQQTADYIHQLEGHK 114 (373)
T ss_pred chHHHHHHhhhHHHHHHHHhcCccc---c---hhhHHHHHHHHHHHHHHHHHhcc
Confidence 4488888999999999999999873 3 89999999999999999987664
No 12
>KOG2483|consensus
Probab=96.58 E-value=0.0021 Score=56.97 Aligned_cols=59 Identities=25% Similarity=0.470 Sum_probs=47.7
Q ss_pred hhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 29 YQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 29 ~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
....+..+..+||+|||-|-.||+.||.+||..-+ . .+=.-+.||.-++.|++.|+...
T Consensus 56 ~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~---~--~~~t~lsiL~kA~~~i~~l~~~~ 114 (232)
T KOG2483|consen 56 AASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNG---E--TRSTTLSILDKALEHIQSLERKS 114 (232)
T ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCC---c--chhhhhHhhhhHHHHHHHHHhHH
Confidence 34566777899999999999999999999998722 1 22237999999999999998654
No 13
>KOG2588|consensus
Probab=96.07 E-value=0.0041 Score=64.08 Aligned_cols=55 Identities=24% Similarity=0.412 Sum_probs=50.8
Q ss_pred hhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 31 YRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 31 ~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
-||..|.+||||=|--||+.+.|||.+++..- .|+.|..+|.-+++|++.++...
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~-------aKl~kSavLr~ai~~i~dl~~~n 329 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTE-------AKLNKSAVLRKAIDYIEDLQGYN 329 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccH-------hhhhhhhhHHHHHHHHHHhhccc
Confidence 68999999999999999999999999999762 89999999999999999998654
No 14
>KOG3960|consensus
Probab=95.93 E-value=0.0096 Score=53.77 Aligned_cols=54 Identities=22% Similarity=0.409 Sum_probs=42.3
Q ss_pred hhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Q psy3614 31 YRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRR 90 (209)
Q Consensus 31 ~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~ 90 (209)
+|+..-.|=||||=.++|+.++.||.=-- ...+-+|-|.+||..+|+|+..||.
T Consensus 117 DRRKAATMRERRRLkKVNEAFE~LKRrT~------~NPNQRLPKVEILRsAI~YIE~Lq~ 170 (284)
T KOG3960|consen 117 DRRKAATMRERRRLKKVNEAFETLKRRTS------SNPNQRLPKVEILRSAIRYIERLQA 170 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcC------CCccccccHHHHHHHHHHHHHHHHH
Confidence 34444468899999999999999987322 1234799999999999999999874
No 15
>KOG4029|consensus
Probab=95.26 E-value=0.0063 Score=52.75 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 37 PMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 37 pl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
...||.|=.-+|..+.+|+.+||..... ..||-|.|+|..||+||+.|+.--
T Consensus 114 n~RER~Rv~~vN~~f~~Lr~~lP~~~~~----~kklSKveTLr~A~~YI~~L~~lL 165 (228)
T KOG4029|consen 114 NARERQRVQSVNSAFAELRALLPTEPPQ----SKKLSKVETLRLATSYIRYLTKLL 165 (228)
T ss_pred hhhhhhcccchhhhhHHHHhcCCCCCCc----ccccCcccchHHHHHHHHHHHHHh
Confidence 3458888888999999999999988531 389999999999999999998654
No 16
>KOG3558|consensus
Probab=94.83 E-value=0.021 Score=57.60 Aligned_cols=79 Identities=27% Similarity=0.345 Sum_probs=52.1
Q ss_pred hhhccccccccccccccCccchh-------hhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHH
Q psy3614 6 HENQINMINNTVDIEQLQPISRT-------YQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADIL 78 (209)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~s~t-------~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdIL 78 (209)
++|.+..+.-.+..+..-..++. ...||..-.-..|=||-+=|.-+.||+.+||-. ....+.||||.|+
T Consensus 13 ~~~~~~~~~~~~~~d~~ps~~~r~~~~~~~~~~rkEkSRdAARsRRsKEn~~FyeLa~~lPlp----~aisshLDkaSim 88 (768)
T KOG3558|consen 13 EENSTSLIHFSINQDKKPSLSERHPNRPRLQELRKEKSRDAARSRRSKENEEFYELAKLLPLP----AAISSHLDKASIM 88 (768)
T ss_pred cccccccccccchhhhCcchhhccCcchhHHHHHhhhhhhhhhhhcccchHHHHHHHHhCCCc----chhhhhhhhHHHH
Confidence 44555555555554422111111 134444444555668999999999999999842 2234899999999
Q ss_pred HHHHHHHHHH
Q psy3614 79 ELTVQHLQKM 88 (209)
Q Consensus 79 E~TV~yLk~L 88 (209)
.+||.|||.-
T Consensus 89 RLtISyLRlr 98 (768)
T KOG3558|consen 89 RLTISYLRLR 98 (768)
T ss_pred HHHHHHHHHH
Confidence 9999999863
No 17
>PLN03217 transcription factor ATBS1; Provisional
Probab=94.41 E-value=0.092 Score=40.52 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=38.9
Q ss_pred HHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHh
Q psy3614 45 ARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91 (209)
Q Consensus 45 ~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~ 91 (209)
|-||+-+..|+.|||+... +.+..|+.-+.+|..|..|++.|++.
T Consensus 20 dqi~dLvsKLq~llPe~r~--~r~s~k~saskvLqEtC~YIrsLhrE 64 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRD--SRRSDKVSAARVLQDTCNYIRNLHRE 64 (93)
T ss_pred HHHHHHHHHHHHHChHHHh--hhccccccHHHHHHHHHHHHHHHHHH
Confidence 7799999999999999854 23348999999999999999999864
No 18
>KOG3910|consensus
Probab=91.57 E-value=0.37 Score=47.47 Aligned_cols=62 Identities=26% Similarity=0.295 Sum_probs=48.1
Q ss_pred hhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhhhc
Q psy3614 29 YQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRL 94 (209)
Q Consensus 29 ~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~~~ 94 (209)
++.||+....-||-|=.-||+.|.||.+|.-.+++.|... .|.-||.++|..|-.|.+|.+.
T Consensus 523 EkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQ----TKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 523 EKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQ----TKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcc----hhhhHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666669999999999999988765443 6778999999999999888753
No 19
>KOG3559|consensus
Probab=87.11 E-value=0.46 Score=46.08 Aligned_cols=45 Identities=36% Similarity=0.403 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Q psy3614 39 LERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQK 87 (209)
Q Consensus 39 ~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~ 87 (209)
-.|.||+.=|-.+-||..|||-+... .+.+|||.|..+|-.|||.
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AI----tsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAI----TSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhh----hhccchhhhhhHHHHHHHH
Confidence 45779999999999999999987442 2679999999999999996
No 20
>KOG4395|consensus
Probab=71.18 E-value=5.5 Score=36.38 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=46.0
Q ss_pred hhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Q psy3614 31 YRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRR 90 (209)
Q Consensus 31 ~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~ 90 (209)
.|+..-+-.|+||=--+|..||.|+..+|+. ....||.|-+-|.|+-.|+-.|-.
T Consensus 173 ~rr~aanarErrrm~gLN~AfD~Lr~v~p~~-----~~d~~LSkyetLqmaq~yi~~l~~ 227 (285)
T KOG4395|consen 173 HRRLAANARERRRMNGLNSAFDRLRLVVPDG-----DSDKKLSKYETLQMAQGYILALGC 227 (285)
T ss_pred hhhcccchHHHHHhhhHHHHHHHHHHhcCCC-----CccchhhhhhHHHHHHHHHhhhHH
Confidence 5666677888888889999999999998876 334899999999999999887654
No 21
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=57.62 E-value=47 Score=22.88 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=12.9
Q ss_pred cHHhhhhhHHHHHHHH
Q psy3614 101 DADRFRAGFTTCANEV 116 (209)
Q Consensus 101 ~~~~fraGf~~C~~EV 116 (209)
.-..|+.||..|+..+
T Consensus 47 ~e~afr~G~~d~l~~~ 62 (64)
T PF12644_consen 47 SEEAFRQGFRDGLRLL 62 (64)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3578999999999753
No 22
>PF15392 Joubert: Joubert syndrome-associated
Probab=41.03 E-value=23 Score=33.25 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=30.2
Q ss_pred chhhhhhhccCchHHHHHHHHHHHhHHHHHHHHHH
Q psy3614 26 SRTYQYRKVMKPMLERKRRARINRCLDELKDLMVT 60 (209)
Q Consensus 26 s~t~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~ 60 (209)
.||.+-||-.+--|.|+||+||-+.|.+|..+-..
T Consensus 50 qRtekERrEIq~WMkRKrkERmaEYl~qlaEkR~q 84 (329)
T PF15392_consen 50 QRTEKERREIQAWMKRKRKERMAEYLKQLAEKREQ 84 (329)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47888888888899999999999999999776554
No 23
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=35.56 E-value=1.8e+02 Score=24.55 Aligned_cols=41 Identities=10% Similarity=-0.002 Sum_probs=27.2
Q ss_pred HHHHHhhhccCCCCChHHHHHHHHHHHhhhcccccCCCcccc
Q psy3614 113 ANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMDKISPLSVR 154 (209)
Q Consensus 113 ~~EVsrfLs~~~gvd~~~~~rLlsHL~~~l~~~~~~~p~~~~ 154 (209)
..++..++..+|..+-.+-..|+.||..-.. -+...+....
T Consensus 109 ~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~N 149 (193)
T cd04382 109 RAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINN 149 (193)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHH
Confidence 3456667777887776777899999987655 4444444443
No 24
>KOG3898|consensus
Probab=33.21 E-value=23 Score=31.64 Aligned_cols=48 Identities=25% Similarity=0.394 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 40 ERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 40 EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
||+|=--+|+.|+.|+..||.. ....||-|++.|..+-.|+-.|+.-.
T Consensus 80 ER~RMH~LNdAld~LReviP~~-----~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 80 ERTRMHDLNDALDALREVIPHG-----LHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred hhccccchhHHHHHhHhhccCc-----CCCCCCCcchhHHhhhcchhhhcccc
Confidence 4444445799999999999972 23489999999998888888876443
No 25
>KOG1954|consensus
Probab=29.47 E-value=2e+02 Score=28.39 Aligned_cols=76 Identities=20% Similarity=0.413 Sum_probs=44.2
Q ss_pred cchhhhhhhccCchHHHHHHHHHHHh-HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhhhccCCCcccHH
Q psy3614 25 ISRTYQYRKVMKPMLERKRRARINRC-LDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNPVTDAD 103 (209)
Q Consensus 25 ~s~t~~~RK~~Kpl~EKrRR~RIN~~-L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~~~~~~~~~~~~ 103 (209)
..+....||.+ .++.+-|++|++.. ++.|+.-+|..+++++. |-+|...-.+-..+|+.-..+......+.+
T Consensus 285 lp~ka~~rKin-d~ikrAr~akvHAyiis~lkkemp~~~gk~~~------kk~lidnl~~iy~~l~re~~Is~gDfPd~~ 357 (532)
T KOG1954|consen 285 LPRKAALRKLN-DLIKRARLAKVHAYIISCLKKEMPSVFGKEKK------KKRLIDNLIDIYEKLQREHNISPGDFPDVE 357 (532)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhcchhh------HHHHHHhHHHHHHHHhHhhcCCCcCCCCHH
Confidence 34455567765 47777788888876 57899999999877552 333333333344445544444333344444
Q ss_pred hhhh
Q psy3614 104 RFRA 107 (209)
Q Consensus 104 ~fra 107 (209)
.|+.
T Consensus 358 ~mre 361 (532)
T KOG1954|consen 358 KMRE 361 (532)
T ss_pred HHHH
Confidence 4443
No 26
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=28.65 E-value=1.9e+02 Score=25.73 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=23.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Q psy3614 43 RRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTV 82 (209)
Q Consensus 43 RR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV 82 (209)
=|+|||+.|..-...+-++.. ..-+++|-+|...-|
T Consensus 104 iR~RinkGlRvAE~~i~eA~~----~~~~~~~~~i~~e~i 139 (221)
T COG1458 104 IRERINKGLRVAEEAIREASI----ECYELEKEEIIREVV 139 (221)
T ss_pred HHHHHHhhhhhHHHHHHHHHH----HHHHhhhhhHHHHHH
Confidence 478999999888777777632 124556655554433
No 27
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=28.54 E-value=1.5e+02 Score=18.61 Aligned_cols=17 Identities=18% Similarity=0.524 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy3614 75 ADILELTVQHLQKMRRQ 91 (209)
Q Consensus 75 AdILE~TV~yLk~Lq~~ 91 (209)
.||++-+.+|+++|+.+
T Consensus 20 ~d~~~f~~~yF~kL~~~ 36 (38)
T smart00394 20 SDLVQFAADYFEKLEEQ 36 (38)
T ss_pred CcHHHHHHHHHHHHHHc
Confidence 37899999999888764
No 28
>PF08504 RunxI: Runx inhibition domain; InterPro: IPR013711 This domain lies to the C terminus of Runx-related transcription factors and homologous proteins (AML, CBF-alpha, PEBP2). Its function might be to interact with functional cofactors [].
Probab=27.58 E-value=26 Score=27.67 Aligned_cols=9 Identities=44% Similarity=1.265 Sum_probs=7.1
Q ss_pred CCCCCCCCC
Q psy3614 201 SPKSVWRPW 209 (209)
Q Consensus 201 ~~~~~wrpw 209 (209)
.++.||||+
T Consensus 93 ~dEaVWRPY 101 (101)
T PF08504_consen 93 MDEAVWRPY 101 (101)
T ss_pred cccccccCC
Confidence 347999995
No 29
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=26.17 E-value=1.8e+02 Score=18.56 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy3614 75 ADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 75 AdILE~TV~yLk~Lq~~~ 92 (209)
.||++-+.+|..+|..++
T Consensus 20 ~Di~~F~a~yF~~L~~~R 37 (38)
T PF02197_consen 20 DDILQFAADYFEKLEKQR 37 (38)
T ss_dssp S-HHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhh
Confidence 489999999999887654
No 30
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=25.29 E-value=1.4e+02 Score=21.71 Aligned_cols=48 Identities=13% Similarity=0.275 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Q psy3614 40 ERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMR 89 (209)
Q Consensus 40 EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq 89 (209)
.+.|++.|-.-++....+|-..... ....++.+.+.-+++..+|+.++
T Consensus 5 ~~~~k~~l~~~v~~a~~~i~~~~~~--~~~g~ls~eea~~~a~~~l~~~r 52 (95)
T PF08269_consen 5 LEERKEQLKNVVESAISLIESYYAQ--AQAGKLSEEEAQQQAREALRALR 52 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHC---STT-----TTHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHhccc
Confidence 3445555555566555555554332 22378999999999999998875
No 31
>PF06412 TraD: Conjugal transfer protein TraD; InterPro: IPR009444 This family consists of a group of TraD conjugal transfer proteins found primarily, though not exclusively, in the alphaproteobacteria [].; GO: 0000746 conjugation
Probab=25.08 E-value=2.2e+02 Score=20.21 Aligned_cols=43 Identities=26% Similarity=0.470 Sum_probs=33.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Q psy3614 41 RKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRR 90 (209)
Q Consensus 41 KrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~ 90 (209)
+.||+| ++.+-+|..||..+ + ...++++.||-.-+.....+..
T Consensus 4 ~~Rk~r-tr~~i~lGgLV~kA----G--l~~~d~~~LlG~Ll~~~~~~~~ 46 (65)
T PF06412_consen 4 KARKAR-TRRKIQLGGLVIKA----G--LDDLDRAELLGALLEAAELLDD 46 (65)
T ss_pred HHHHHH-HHHHHHHHHHHHHh----C--CCCCCHHHHHHHHHHHHHhccc
Confidence 345555 67888999999988 3 3889999999998888776643
No 32
>KOG3390|consensus
Probab=23.78 E-value=3.9e+02 Score=21.55 Aligned_cols=73 Identities=14% Similarity=0.274 Sum_probs=37.2
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH-HHHHHHhhhccCCCcccHHhh---hhhHHHH
Q psy3614 37 PMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQH-LQKMRRQQRLASNPVTDADRF---RAGFTTC 112 (209)
Q Consensus 37 pl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~y-Lk~Lq~~~~~~~~~~~~~~~f---raGf~~C 112 (209)
-+-||+|++-|-. ...|..+|.+++. .+++.|=+=+.-+++ +|.|+-+...... ..+.| -.||...
T Consensus 18 elqEK~r~EAI~a-A~~l~~alVdhlN------~gVaqay~Nqkrld~E~k~l~~~~A~faK---QT~QWl~vte~~N~A 87 (120)
T KOG3390|consen 18 ELQEKTRKEAIRA-AARLADALVDHLN------GGVAQAYVNQKRLDSEIKNLAITVAKFAK---QTDQWLAVTEAVNSA 87 (120)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHh------hhHHHHHhhHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHH
Confidence 6789999988854 3456666777643 444444332222221 1222211100000 01222 3688889
Q ss_pred HHHHHhh
Q psy3614 113 ANEVSKC 119 (209)
Q Consensus 113 ~~EVsrf 119 (209)
++|+..|
T Consensus 88 lKEIGDv 94 (120)
T KOG3390|consen 88 LKEIGDV 94 (120)
T ss_pred HHHHhhH
Confidence 9988665
No 33
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=23.29 E-value=99 Score=25.71 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=28.4
Q ss_pred hhhccccccccccccccC-ccchhhhhhhccCchHHHHHH---HHHHHhHHHHHHHHHHH
Q psy3614 6 HENQINMINNTVDIEQLQ-PISRTYQYRKVMKPMLERKRR---ARINRCLDELKDLMVTA 61 (209)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~s~t~~~RK~~Kpl~EKrRR---~RIN~~L~eLk~Llp~~ 61 (209)
-|+.|.|..+-+....+. .........+.+-..+-+|++ +|++.|+.+||.|=...
T Consensus 3 ~k~~i~~~~sg~~l~sgs~~~~~~~~~~~e~~~~Lk~rk~~Lee~L~~kl~ELk~lClrE 62 (138)
T PF11819_consen 3 SKGEISDTSSGSILSSGSKDSESEEAAKKERLRALKKRKQALEERLAQKLEELKKLCLRE 62 (138)
T ss_pred cccceeecCCcceecCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777665544433221 111111222222222333333 78999999999985543
No 34
>KOG4168|consensus
Probab=22.77 E-value=69 Score=27.02 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHH
Q psy3614 39 LERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILEL 80 (209)
Q Consensus 39 ~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~ 80 (209)
....-+++|++++..|+ ..||-||+||+.
T Consensus 64 ~~~qt~E~i~el~~k~~-------------~fkLtKAE~Lqi 92 (149)
T KOG4168|consen 64 ASTQTNESIIELITKLK-------------SFKLTKAEILQI 92 (149)
T ss_pred cccccHHHHHHHHHHhc-------------cccchHHHHHHH
Confidence 45556677777666553 278899999863
No 35
>KOG4447|consensus
Probab=21.01 E-value=29 Score=29.68 Aligned_cols=54 Identities=26% Similarity=0.394 Sum_probs=43.9
Q ss_pred hhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Q psy3614 30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMR 89 (209)
Q Consensus 30 ~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq 89 (209)
+..+..+.+-|++|=.-+|+.+..|+..++..- ..|+.|.--|.++-.|+-.|-
T Consensus 76 q~qrv~anvrerqRtqsLn~AF~~lr~iiptlP------sdklSkiqtLklA~ryidfl~ 129 (173)
T KOG4447|consen 76 QKQRVMANVRERQRTQSLNEAFAALRKIIPTLP------SDKLSKIQTLKLAARYIDFLY 129 (173)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCC------ccccccccchhhcccCCchhh
Confidence 346677788899999999999999999998762 378889888888888776653
No 36
>KOG4571|consensus
Probab=20.80 E-value=3e+02 Score=25.70 Aligned_cols=17 Identities=24% Similarity=0.383 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy3614 73 EKADILELTVQHLQKMR 89 (209)
Q Consensus 73 EKAdILE~TV~yLk~Lq 89 (209)
|-|+=||.=|+|||+|-
T Consensus 269 ~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 269 DQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67888999999999874
No 37
>KOG3003|consensus
Probab=20.29 E-value=1.8e+02 Score=26.31 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=28.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Q psy3614 43 RRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKM 88 (209)
Q Consensus 43 RR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~L 88 (209)
=|+|.+++.+.-|..-...|.+ .=||=||||+-|+.-++.-
T Consensus 103 lr~R~~r~~edak~FaiQ~f~k-----dLleVaD~Le~a~~~v~ee 143 (236)
T KOG3003|consen 103 LRDRTIRDVEDAKKFAIQSFCK-----DLLEVADNLEKATECVKEE 143 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcchh
Confidence 3566677777666665555544 4478899999999888753
No 38
>PRK15322 invasion protein OrgB; Provisional
Probab=20.19 E-value=2.1e+02 Score=25.45 Aligned_cols=35 Identities=11% Similarity=0.260 Sum_probs=24.8
Q ss_pred HHhhhhhHHHHHHHHHhhhccCCCCChHHHHHHHH
Q psy3614 102 ADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMS 136 (209)
Q Consensus 102 ~~~fraGf~~C~~EVsrfLs~~~gvd~~~~~rLls 136 (209)
.+.|.+|......|+..|+........+...++..
T Consensus 45 ~~GYq~Gl~qa~~~la~~~a~~~~l~~~l~~~ie~ 79 (210)
T PRK15322 45 QEGYEQGMIDALQQVAAYLTDNQTMAWKWMEKIQI 79 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999998865443333333333
No 39
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=20.15 E-value=2.3e+02 Score=18.57 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhhhc
Q psy3614 107 AGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLN 143 (209)
Q Consensus 107 aGf~~C~~EVsrfLs~~~gvd~~~~~rLlsHL~~~l~ 143 (209)
.|-.+.++++..+|+.++ +.-.+...+..|+..++
T Consensus 19 egk~~~~~~~~~~i~~i~--~~i~r~~y~~~la~~~~ 53 (59)
T PF10410_consen 19 EGKAEAVREAAPLIAQIP--DPIERELYIRELAERLG 53 (59)
T ss_dssp HHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHhC
Confidence 588889999999998886 55567777777776554
No 40
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=20.11 E-value=3.2e+02 Score=22.65 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=26.1
Q ss_pred HHHHHhhhccCCCCChHHHHHHHHHHHhhhcccccCCCcc
Q psy3614 113 ANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMDKISPLS 152 (209)
Q Consensus 113 ~~EVsrfLs~~~gvd~~~~~rLlsHL~~~l~~~~~~~p~~ 152 (209)
+.++..++..+|..+-.+-..|+.||......-+...+..
T Consensus 113 ~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~ 152 (189)
T cd04393 113 GRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTA 152 (189)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCH
Confidence 4556777777887666677888899886654433333333
Done!