Query psy3614
Match_columns 209
No_of_seqs 179 out of 515
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 21:05:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a0a_A BHLH, protein (phosphat 99.7 9.7E-18 3.3E-22 119.0 3.5 60 32-92 2-61 (63)
2 4h10_A ARYL hydrocarbon recept 99.7 2E-17 6.9E-22 120.7 4.4 57 30-90 7-63 (73)
3 4h10_B Circadian locomoter out 99.6 1.1E-15 3.7E-20 111.3 2.9 56 30-92 6-61 (71)
4 1an4_A Protein (upstream stimu 99.5 2.8E-15 9.5E-20 105.8 -1.7 60 31-92 4-63 (65)
5 2db7_A Hairy/enhancer-OF-split 99.4 1.4E-13 4.6E-18 98.4 4.2 46 102-147 16-64 (64)
6 1am9_A Srebp-1A, protein (ster 99.4 3.3E-13 1.1E-17 99.7 3.9 56 30-92 4-59 (82)
7 4ati_A MITF, microphthalmia-as 99.3 2.8E-13 9.5E-18 106.4 3.2 60 29-92 24-83 (118)
8 1hlo_A Protein (transcription 99.2 4.6E-12 1.6E-16 92.7 3.3 58 29-92 9-66 (80)
9 1nkp_B MAX protein, MYC proto- 99.2 3.2E-12 1.1E-16 94.0 1.8 55 32-92 2-56 (83)
10 4f3l_A Mclock, circadian locom 99.2 1.1E-11 3.7E-16 110.2 3.3 56 30-92 10-65 (361)
11 4f3l_B BMAL1B; BHLH, PAS, circ 99.1 2.1E-11 7E-16 109.8 4.4 58 30-91 11-68 (387)
12 3u5v_A Protein MAX, transcript 99.0 4.4E-10 1.5E-14 82.3 6.1 59 30-93 3-62 (76)
13 1nkp_A C-MYC, MYC proto-oncoge 99.0 1.4E-10 4.7E-15 86.8 2.7 57 31-92 5-61 (88)
14 1nlw_A MAD protein, MAX dimeri 98.7 2.3E-09 7.7E-14 79.1 1.8 55 33-92 2-56 (80)
15 1mdy_A Protein (MYOD BHLH doma 98.5 1.7E-08 5.9E-13 72.4 1.2 57 29-91 9-65 (68)
16 2ql2_B Neurod1, neurogenic dif 98.5 3.5E-08 1.2E-12 69.1 2.2 55 32-91 2-56 (60)
17 2lfh_A DNA-binding protein inh 98.4 3.2E-08 1.1E-12 71.4 0.3 48 38-90 20-67 (68)
18 4ath_A MITF, microphthalmia-as 98.0 2.5E-06 8.7E-11 63.6 2.7 45 44-92 4-48 (83)
19 4aya_A DNA-binding protein inh 97.8 1.7E-05 5.9E-10 60.6 4.1 61 42-110 35-95 (97)
20 3axj_B TRAX, translin associat 49.5 67 0.0023 28.1 8.3 73 43-117 47-125 (298)
21 2a1j_A DNA repair endonuclease 31.3 20 0.0007 24.0 1.6 23 118-140 4-26 (63)
22 1z00_B DNA repair endonuclease 28.0 34 0.0012 24.5 2.4 24 117-140 17-40 (84)
23 2pmr_A Uncharacterized protein 22.3 1.5E+02 0.005 21.6 4.9 69 44-120 6-78 (87)
24 2kxc_B ESPF-like protein; IRTK 20.4 1.4E+02 0.0047 19.8 4.0 12 130-141 5-16 (48)
No 1
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.68 E-value=9.7e-18 Score=119.00 Aligned_cols=60 Identities=18% Similarity=0.304 Sum_probs=54.0
Q ss_pred hhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 32 RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
||.+|+++||+||+|||.+|++|+.|||.++..++. .+|++||+|||+||+||+.|+.+.
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~-~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNV-SAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSC-CCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCccccccc-CCcccHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999876532 489999999999999999998653
No 2
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.68 E-value=2e-17 Score=120.73 Aligned_cols=57 Identities=30% Similarity=0.525 Sum_probs=51.4
Q ss_pred hhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Q psy3614 30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRR 90 (209)
Q Consensus 30 ~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~ 90 (209)
..||..|+++|||||+|||.+|++|+.|||.+.. ..+|+|||+||++||+||+.|+.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~----~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNA----MSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHT----CSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHcccccc----ccccccHHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999999852 24899999999999999999873
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.55 E-value=1.1e-15 Score=111.25 Aligned_cols=56 Identities=25% Similarity=0.458 Sum_probs=50.3
Q ss_pred hhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 30 ~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
..+|..+.++|||||++||.+|.+|+.|||. ...|+||++||++||+||+.|+...
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~-------~~~K~dK~sIL~~aI~yik~Lq~~~ 61 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPG-------NARKMDKSTVLQKSIDFLRKHKEIT 61 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS-------CCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC-------CCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 4578889999999999999999999999993 2379999999999999999998764
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=2.8e-15 Score=105.77 Aligned_cols=60 Identities=23% Similarity=0.362 Sum_probs=51.5
Q ss_pred hhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 31 YRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 31 ~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
.||..|.++||+||++||.+|.+|+.|||.+... ....|++||+||++||+||+.|+.+.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~--~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSME--STKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCC--SSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccc--cccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999999999999987321 11258999999999999999998653
No 5
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=99.40 E-value=1.4e-13 Score=98.38 Aligned_cols=46 Identities=33% Similarity=0.604 Sum_probs=41.5
Q ss_pred HHhhhh-hHHHHHHHHHhhhccCCCCChH--HHHHHHHHHHhhhccccc
Q psy3614 102 ADRFRA-GFTTCANEVSKCLASTPGIDLR--LGTKLMSHLGQRLNEMDK 147 (209)
Q Consensus 102 ~~~fra-Gf~~C~~EVsrfLs~~~gvd~~--~~~rLlsHL~~~l~~~~~ 147 (209)
+++|++ ||++|++||+|||+.++|+|+. ++.|||+||+++++++++
T Consensus 16 ~~~yrs~Gf~eC~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~~~~~e~ 64 (64)
T 2db7_A 16 AMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQREA 64 (64)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhccCC
Confidence 578995 9999999999999999999987 999999999999998763
No 6
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.36 E-value=3.3e-13 Score=99.66 Aligned_cols=56 Identities=25% Similarity=0.413 Sum_probs=51.0
Q ss_pred hhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 30 ~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
..||..|.++||+||++||++|.+|+.|||.. ..|++||+||+.||+||+.|+.+.
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-------~~k~~Ka~IL~~Ai~YI~~Lq~~~ 59 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGT-------EAKLNKSAVLRKAIDYIRFLQHSN 59 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-------SCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999999999999999999963 289999999999999999998765
No 7
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.35 E-value=2.8e-13 Score=106.44 Aligned_cols=60 Identities=28% Similarity=0.421 Sum_probs=46.6
Q ss_pred hhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 29 YQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 29 ~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
...+|..|.++||+||++||++|.+|+.|||.+.+. ..|++||+||++||+||+.|+.+.
T Consensus 24 ~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~----~~k~~Ka~IL~~aieYIk~Lq~~~ 83 (118)
T 4ati_A 24 ERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDP----DMRWNKGTILKASVDYIRKLQREQ 83 (118)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHSCCC--------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCc----cccCCHHHHHHHHHHHHHHHHHHH
Confidence 446889999999999999999999999999987432 379999999999999999998754
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.21 E-value=4.6e-12 Score=92.71 Aligned_cols=58 Identities=29% Similarity=0.407 Sum_probs=51.8
Q ss_pred hhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 29 YQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 29 ~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
...+|..|...||+||+.||.+|++|+.+||... ..|++|++||..||+||+.|+...
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~~~ 66 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKN 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT------TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC------CCCccHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999999999999999763 279999999999999999998654
No 9
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.20 E-value=3.2e-12 Score=93.95 Aligned_cols=55 Identities=31% Similarity=0.465 Sum_probs=49.8
Q ss_pred hhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 32 RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
||..|...||+||+.||.+|++|+.+||... ..|++|++||..||+||+.|+.+.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~~~ 56 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKN 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT------TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999762 279999999999999999998654
No 10
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.15 E-value=1.1e-11 Score=110.19 Aligned_cols=56 Identities=25% Similarity=0.469 Sum_probs=42.6
Q ss_pred hhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 30 ~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
..+|..+.++|||||+|||..|.+|+.|||. ..+|||||+||++||.|||.++...
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~-------~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPG-------NARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCS-------SSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCC-------CCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 4567788999999999999999999999991 2389999999999999999987643
No 11
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.14 E-value=2.1e-11 Score=109.84 Aligned_cols=58 Identities=29% Similarity=0.516 Sum_probs=51.2
Q ss_pred hhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHh
Q psy3614 30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91 (209)
Q Consensus 30 ~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~ 91 (209)
..+|.+|.++|||||+|||..|.+|+.|||.+- ...+||||+.||++||.|||.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~----~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCN----AMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH----HCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCC----ccccccCHHHHHHHHHHHHHHhhcc
Confidence 456778899999999999999999999999873 2348999999999999999999843
No 12
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.01 E-value=4.4e-10 Score=82.31 Aligned_cols=59 Identities=32% Similarity=0.398 Sum_probs=46.6
Q ss_pred hhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchh-hHHHHHHHHHHHHHHHHHhhh
Q psy3614 30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKL-EKADILELTVQHLQKMRRQQR 93 (209)
Q Consensus 30 ~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KL-EKAdILE~TV~yLk~Lq~~~~ 93 (209)
..||..+...||+||+.||+++++|+.+||.+... .|. .|++||..||+|++.|+++..
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~-----~K~~sK~~IL~~AieYI~~Lq~~l~ 62 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKS-----DKAQTKLLILQQAVQVILGLEQQVR 62 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCc-----cccccHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999976421 344 799999999999999998764
No 13
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.99 E-value=1.4e-10 Score=86.82 Aligned_cols=57 Identities=23% Similarity=0.322 Sum_probs=50.8
Q ss_pred hhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 31 YRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 31 ~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
.++..|..+||+||+.||++|..|+.+||... ...|++|++||..|++|++.|+.+.
T Consensus 5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~-----~~~K~sK~~iL~~A~~YI~~L~~~~ 61 (88)
T 1nkp_A 5 VKRRTHNVLERQRRNELKRSFFALRDQIPELE-----NNEKAPKVVILKKATAYILSVQAEE 61 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGT-----TCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 47788899999999999999999999999762 2379999999999999999998765
No 14
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=98.74 E-value=2.3e-09 Score=79.06 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=47.6
Q ss_pred hccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 33 KVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 33 K~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
+..|..+||+||+.||.||+.|+.+||.. ....|+.|++||..|++|++.|+...
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~-----~~~~k~sk~~iL~kA~~yI~~L~~~~ 56 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLG-----PDSSRHTTLSLLTKAKLHIKKLEDSD 56 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCC-----SSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999964 23488999999999999999998764
No 15
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.53 E-value=1.7e-08 Score=72.45 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=49.5
Q ss_pred hhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHh
Q psy3614 29 YQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91 (209)
Q Consensus 29 ~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~ 91 (209)
...|+..+...|++|+..||+.|+.|+.+||.. + ..||.|++||..+++|+..|+..
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~----~--~~KlSKi~tLr~Ai~YI~~L~~~ 65 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSN----P--NQRLPKVEILRNAIRYIEGLQAL 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC----T--TSCCCHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCC----C--CCCCCHHHHHHHHHHHHHHHHHH
Confidence 346677788999999999999999999999953 1 37999999999999999999864
No 16
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.50 E-value=3.5e-08 Score=69.13 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=47.2
Q ss_pred hhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHh
Q psy3614 32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91 (209)
Q Consensus 32 RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~ 91 (209)
|+.....-|++|+.-||..++.|+.+||.. ....||.|.+||.+++.|+..|+..
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~-----~~~~klSKi~tLr~Ai~YI~~L~~~ 56 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCY-----SKTQKLSKIETLRLAKNYIWALSEI 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSC-----CSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCC-----CCcCcCCHHHHHHHHHHHHHHHHHH
Confidence 344566889999999999999999999965 2248999999999999999999864
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.42 E-value=3.2e-08 Score=71.41 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Q psy3614 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRR 90 (209)
Q Consensus 38 l~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~ 90 (209)
.-||+|+..||++|+.|+.+||... ...||.|.+||.++++|+..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p-----~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVP-----RGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCC-----TTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCccHHHHHHHHHHHHHHHHc
Confidence 4578888999999999999999852 34899999999999999999974
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.00 E-value=2.5e-06 Score=63.62 Aligned_cols=45 Identities=29% Similarity=0.426 Sum_probs=39.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614 44 RARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92 (209)
Q Consensus 44 R~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~ 92 (209)
|.-||+.+.+|..|||.+. ....|..|+.||..||+|++.|++..
T Consensus 4 R~nIN~~I~EL~~LiP~~~----~~~~k~nKg~IL~ksvdYI~~Lq~e~ 48 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSN----DPDMRWNKGTILKASVDYIRKLQREQ 48 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCC----CTTCCCSHHHHHHHHHHHHHHHHHTH
T ss_pred hhhHHHhhhhhhccCCCCC----CcccCcchHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999862 23489999999999999999998643
No 19
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.79 E-value=1.7e-05 Score=60.62 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=41.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhhhccCCCcccHHhhhhhHH
Q psy3614 42 KRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNPVTDADRFRAGFT 110 (209)
Q Consensus 42 rRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~~~~~~~~~~~~~fraGf~ 110 (209)
.|=.-||++|+.|+.+||... ...||.|.|||.+++.|++.|+..-.....+ ...|.+||.
T Consensus 35 ~Rm~~lN~AF~~LR~~vP~~p-----~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~---~~~~~~g~~ 95 (97)
T 4aya_A 35 SLLYNMNDCYSKLKELVPSIP-----QNKKVSKMEILQHVIDYILDLQIALDSHLKP---SFLVQSGDI 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHCTTSC-----SSSCCCHHHHHHHHHHHHHHHHHHHHTTTST---TCC------
T ss_pred HHHHHHHHHHHHHHHHCCCCC-----CCCcccHHHHHHHHHHHHHHHHHHHhcCCCC---cchhhcCcc
Confidence 344559999999999999751 3489999999999999999998755332221 224777875
No 20
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=49.51 E-value=67 Score=28.06 Aligned_cols=73 Identities=22% Similarity=0.231 Sum_probs=43.4
Q ss_pred HHHHHHHhHHHHHHHHHH---HHHhcccccchhhHHHHHHHHHHHHHHHHHhh--hccC-CCcccHHhhhhhHHHHHHHH
Q psy3614 43 RRARINRCLDELKDLMVT---ALQAEGENVSKLEKADILELTVQHLQKMRRQQ--RLAS-NPVTDADRFRAGFTTCANEV 116 (209)
Q Consensus 43 RR~RIN~~L~eLk~Llp~---~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~--~~~~-~~~~~~~~fraGf~~C~~EV 116 (209)
+|+||-+.-.++-..--. .++.- ...+-++.+||+.+-..|..+..+. .++. -+..+..+|..+|+.+++|.
T Consensus 47 ~RErIikisRdIt~~Sk~~If~Lhr~--~~~~~~~~~~l~eA~~~l~~i~~~~~~~la~~l~~~~~y~y~~~~s~~lQE~ 124 (298)
T 3axj_B 47 RHERIVKLSRDITIESKRIIFLLHSI--DSRKQNKEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEF 124 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC--CSCGGGHHHHHHHHHHHHHHHHHTHHHHHHHHTTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHhccCHHHHHH
Confidence 778876665555433222 22221 1124567889999999998886532 1111 11223567888999999886
Q ss_pred H
Q psy3614 117 S 117 (209)
Q Consensus 117 s 117 (209)
.
T Consensus 125 V 125 (298)
T 3axj_B 125 I 125 (298)
T ss_dssp H
T ss_pred H
Confidence 4
No 21
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=31.26 E-value=20 Score=24.05 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.0
Q ss_pred hhhccCCCCChHHHHHHHHHHHh
Q psy3614 118 KCLASTPGIDLRLGTKLMSHLGQ 140 (209)
Q Consensus 118 rfLs~~~gvd~~~~~rLlsHL~~ 140 (209)
..|..+||+.+.....||.|++.
T Consensus 4 s~L~~IpGIG~kr~~~LL~~Fgs 26 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMHHVKN 26 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHHHCSS
T ss_pred hHHHcCCCCCHHHHHHHHHHcCC
Confidence 46778999999999999999874
No 22
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=28.02 E-value=34 Score=24.54 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.5
Q ss_pred HhhhccCCCCChHHHHHHHHHHHh
Q psy3614 117 SKCLASTPGIDLRLGTKLMSHLGQ 140 (209)
Q Consensus 117 srfLs~~~gvd~~~~~rLlsHL~~ 140 (209)
..+|..+||+.+....+||.|++.
T Consensus 17 ~s~L~~IpGIG~kr~~~LL~~FgS 40 (84)
T 1z00_B 17 QDFLLKMPGVNAKNCRSLMHHVKN 40 (84)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHSSC
T ss_pred HHHHHhCCCCCHHHHHHHHHHcCC
Confidence 456778999999999999999874
No 23
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=22.32 E-value=1.5e+02 Score=21.61 Aligned_cols=69 Identities=13% Similarity=0.162 Sum_probs=41.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHhcccccchh--hHHHHHHHHHHHHHHHHHhhhccCCC--cccHHhhhhhHHHHHHHHHhh
Q psy3614 44 RARINRCLDELKDLMVTALQAEGENVSKL--EKADILELTVQHLQKMRRQQRLASNP--VTDADRFRAGFTTCANEVSKC 119 (209)
Q Consensus 44 R~RIN~~L~eLk~Llp~~~~~~~~~~~KL--EKAdILE~TV~yLk~Lq~~~~~~~~~--~~~~~~fraGf~~C~~EVsrf 119 (209)
++||.+.+.-|+.-|-.... .++ .-.+|++|+-.|++.=.---. ..+. +...-.|..|+-++ -.+..|
T Consensus 6 ~Eki~kYi~~leeaL~~i~~------~~l~~~a~~~l~mA~~Y~~Da~~fl~-kGD~v~Ala~isYa~GwLDA-lR~~~~ 77 (87)
T 2pmr_A 6 RERIEKDLELLEKNLMEMKS------IKLSDDEEAVVERALNYRDDSVYYLE-KGDHITSFGCITYAHGLLDS-LRMLHR 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHTT------SCCCHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH-HHHHTT
T ss_pred HHHHHHHHHHHHHHHHHccc------ccchHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH-HHHhcc
Confidence 67888888888777666521 111 335899999999997321110 1111 22234677888888 444444
Q ss_pred h
Q psy3614 120 L 120 (209)
Q Consensus 120 L 120 (209)
+
T Consensus 78 ~ 78 (87)
T 2pmr_A 78 I 78 (87)
T ss_dssp S
T ss_pred c
Confidence 3
No 24
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=20.44 E-value=1.4e+02 Score=19.79 Aligned_cols=12 Identities=33% Similarity=0.731 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhh
Q psy3614 130 LGTKLMSHLGQR 141 (209)
Q Consensus 130 ~~~rLlsHL~~~ 141 (209)
+..+|..||+.+
T Consensus 5 iaQaLk~HLAAy 16 (48)
T 2kxc_B 5 VAQRLMQHLAEH 16 (48)
T ss_pred HHHHHHHHHHHH
Confidence 567899999865
Done!