RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3614
(209 letters)
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex,
double helix, overhanging base, transcription/DNA
complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Length = 65
Score = 46.6 bits (111), Expect = 1e-07
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92
+ER+RR +IN + +L ++ + S K IL ++Q++R+
Sbjct: 11 EVERRRRDKINNWIVQLSKIIPDSSME--STKSGQSKGGILSKASDYIQELRQSN 63
>1a0a_A BHLH, protein (phosphate system positive regulatory protein
PHO4); transcription factor, basic helix loop helix;
HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP:
a.38.1.1
Length = 63
Score = 44.0 bits (104), Expect = 8e-07
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 40 ERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91
E+ RR R+ L EL L+ + + + KA +E ++++ +++
Sbjct: 10 EQARRNRLAVALHELASLIPAEWKQQN-VSAAPSKATTVEAACRYIRHLQQN 60
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins,
transcription-activato; 2.27A {Mus musculus}
Length = 387
Score = 47.7 bits (113), Expect = 8e-07
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 40 ERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNPV 99
E++RR ++N +DEL L + KL+K +L + VQH+ + R A+NP
Sbjct: 21 EKRRRDKMNSFIDELASL----VPTCNAMSRKLDKLTVLRMAVQHM----KTLRGATNPY 72
Query: 100 TDAD 103
T+A+
Sbjct: 73 TEAN 76
>1hlo_A Protein (transcription factor MAX); transcriptional regulation,
DNA binding, complex (transcription factor MAX/DNA),
transcription/DNA complex; HET: DNA; 2.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 80
Score = 43.5 bits (103), Expect = 2e-06
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQR 93
LERKRR I L+D V +LQ E K +A IL+ +++Q MRR+
Sbjct: 18 ALERKRRDHIKDSFHSLRDS-VPSLQGE-----KASRAQILDKATEYIQYMRRKNH 67
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 43.1 bits (102), Expect = 3e-06
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQR 93
+LER+RR + R L+D + EN K K IL+ ++ ++ +++
Sbjct: 12 VLERQRRNELKRSFFALRDQIPE-----LENNEKAPKVVILKKATAYILSVQAEEQ 62
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA,
BHLHZ, heterodimer, transcription/DNA complex; 1.80A
{Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A
1nlw_B
Length = 83
Score = 42.8 bits (101), Expect = 3e-06
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQR 93
LERKRR I L+D V +LQ E K +A IL+ +++Q MRR+
Sbjct: 8 ALERKRRDHIKDSFHSLRDS-VPSLQGE-----KASRAQILDKATEYIQYMRRKNH 57
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 2e-05
Identities = 43/249 (17%), Positives = 78/249 (31%), Gaps = 72/249 (28%)
Query: 1 MENMIHENQINMIN-NTVD--IEQLQPISRTYQYRKVMKPMLERKRRA-----RINRCLD 52
M+ I +N+ N N+ + +E LQ + ++ R + RI+
Sbjct: 180 MDFKIF--WLNLKNCNSPETVLEMLQKL-----LYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 53 ELKDLMVTALQAEG----ENVSKLEKADILELTVQHLQKMRRQQRLASNPVTDA------ 102
EL+ L+ + NV + + L+ + L R +Q VTD
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ------VTDFLSAATT 286
Query: 103 -----DRFRAGFTTCANE--VSKCLASTPGIDLRLGTKLMSHLGQRLNEMDKISPLSVRV 155
D T + + K L P DL E+ +P + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLP-------------REVLTTNPRRLSI 332
Query: 156 M------DVCTPPPSPHSDTYSMPLTPASSGSSQVDTCDYTSQYKMYESMPS--PKSVWR 207
+ + T H + + SS ++ + KM++ + S P S
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESS----LNVLEPAEYRKMFDRL-SVFPPSAHI 387
Query: 208 P-------W 209
P W
Sbjct: 388 PTILLSLIW 396
Score = 29.4 bits (65), Expect = 1.0
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 25/93 (26%)
Query: 8 NQINMINNTVDIEQLQPISRTY-QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEG 66
N I NT ++QL + Y Y P ER ++ + D L
Sbjct: 515 NASGSILNT--LQQL----KFYKPYICDNDPKYERL--------VNAILDF----LPKIE 556
Query: 67 ENVSKLEKADILELTVQH------LQKMRRQQR 93
EN+ + D+L + + + ++ QR
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ,
transcription/DNA complex; 2.00A {Homo sapiens} SCOP:
a.38.1.1
Length = 80
Score = 40.2 bits (94), Expect = 3e-05
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQR 93
+E+ RRA + L++LK L+ G + S+ +L H++K+ R
Sbjct: 7 EMEKNRRAHLRLSLEKLKGLV-----PLGPDSSRHTTLSLLTKAKLHIKKLEDSDR 57
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 3e-05
Identities = 26/205 (12%), Positives = 57/205 (27%), Gaps = 68/205 (33%)
Query: 2 ENMIHENQINMI------NNTVDIEQLQPISRTYQY-------RKVMKP----MLE--RK 42
+ N I+ + N + + + + + Y R K + +
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRAVGE 151
Query: 43 RRARI----------NRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92
A++ + +EL+DL T + D+++ + + L
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQT---------YHVLVGDLIKFSAETL------S 196
Query: 93 RLASNPVTDADRFRAGF----------TTCANE-VSKCLASTPGIDLRLGTKLMSH---- 137
L + F G T + + S P I + +L +H
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV---IQL-AHYVVT 252
Query: 138 ---LGQRLNEM-DKISPLSVRVMDV 158
LG E+ + + +
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGL 277
Score = 31.6 bits (71), Expect = 0.20
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 61 ALQAEGE--NVSKLEKADILELTVQ-HLQKMRRQ 91
AL N KL+K DI+EL L+++
Sbjct: 1861 ALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 30.0 bits (67), Expect = 0.72
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 5/21 (23%)
Query: 191 SQYK-M----YESMPSPKSVW 206
SQ + M Y++ + + VW
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVW 1646
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A);
basic-helix-loop- helix-leucine zipper, transcription
factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1
PDB: 1ukl_C
Length = 82
Score = 39.3 bits (92), Expect = 5e-05
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQR 93
+E++ R+ IN + ELKDL V + +KL K+ +L + +++ ++ +
Sbjct: 12 AIEKRYRSSINDKIIELKDL-VVGTE------AKLNKSAVLRKAIDYIRFLQHSNQ 60
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural
genomics, unknown function, DNA binding protein, NPPSFA;
1.90A {Homo sapiens} SCOP: a.273.1.1
Length = 64
Score = 38.5 bits (89), Expect = 9e-05
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 97 NPVTDADRFRA-GFTTCANEVSKCLASTPGIDLR--LGTKLMSHLGQRLNEMD 146
+ A +R+ GF C EV++ L+ G+D L +L+SHL ++ +
Sbjct: 11 DAHALAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQRE 63
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS,
circadian rhythm proteins, transcription-activato; 2.27A
{Mus musculus}
Length = 361
Score = 39.5 bits (92), Expect = 4e-04
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 40 ERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNPV 99
E+KRR + N + EL + L N K++K+ +L+ ++ L + ++ S+
Sbjct: 20 EKKRRDQFNVLIKELGSM----LPG---NARKMDKSTVLQKSIDFL-RKHKETTAQSDAS 71
Query: 100 TDADRFRAGFTTCANEVSKCLASTPG 125
++ F + L + G
Sbjct: 72 EIRQDWKPTFLSNEEFTQLMLEALDG 97
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic
helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB:
2ql2_A*
Length = 76
Score = 31.4 bits (71), Expect = 0.032
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQR 93
LERKRR IN EL + L+++ K IL+ VQ + + +Q R
Sbjct: 11 ALERKRRRDINEAFRELGRMCQMHLKSD----KAQTKLLILQQAVQVILGLEQQVR 62
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human,
immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Length = 232
Score = 29.8 bits (68), Expect = 0.45
Identities = 5/36 (13%), Positives = 9/36 (25%), Gaps = 6/36 (16%)
Query: 158 VCTPPPSPHSDTYSM------PLTPASSGSSQVDTC 187
P Y+ P +G+ + C
Sbjct: 173 TRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVC 208
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen,
allergen, antimic bacteriolytic enzyme, glycosidase,
hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H
3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B
1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H
1f8t_H 1f90_H ...
Length = 210
Score = 28.6 bits (65), Expect = 1.2
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 157 DVCTPPPSPHSDTY---SMPLTPASSGSSQVDTC 187
V T P SD Y S P+S+ S+ TC
Sbjct: 162 GVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTC 195
>2gen_A Probable transcriptional regulator; APC6095, TETR family,
structural genomics, PSI, protein structure initiative;
1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9
a.121.1.1
Length = 197
Score = 27.7 bits (62), Expect = 2.1
Identities = 9/79 (11%), Positives = 18/79 (22%), Gaps = 4/79 (5%)
Query: 47 INRCLDELKDLMVTALQAEGENVSKLEKA--DILELTVQHLQKMR--RQQRLASNPVTDA 102
+ + L+ + ++ V + R R
Sbjct: 59 YLAGIGQYAALLEAGFARARSAEETVRLLVTSYIDWVVANPDWARFILHSRGRVEAGELG 118
Query: 103 DRFRAGFTTCANEVSKCLA 121
+R RA + LA
Sbjct: 119 ERLRADNQAHFARIHAALA 137
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 28.3 bits (62), Expect = 2.3
Identities = 26/192 (13%), Positives = 58/192 (30%), Gaps = 17/192 (8%)
Query: 7 ENQINMINNTVD--IEQLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQA 64
E++I + + D + + + + +++ + + + L + +
Sbjct: 157 EHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHK 216
Query: 65 EGENVSKLEKADILELTVQHLQKMRRQQRLASN---PVTDADRFRAGFTTCANEVSKC-- 119
E ++ E L L + +R+Q+ A P D+ + FT A + +
Sbjct: 217 IIELLNVTELT-QNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRQ 275
Query: 120 -------LASTPGIDLRLGTKLMSHLGQRLNEMDKISPLSVRVMDVCTPPPSPHSDTYSM 172
L + TK L R + L V P P +
Sbjct: 276 QLKKLEELEQKYTYEHDPITKNKQVLWDRTFSL--FQQLIQSSFVVERQPCMPTHPQRPL 333
Query: 173 PLTPASSGSSQV 184
L + ++
Sbjct: 334 VLKTGVQFTVKL 345
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel,
riken structural genomics/proteomics initiative, RSGI;
2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1
d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Length = 582
Score = 27.7 bits (62), Expect = 3.0
Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 12/46 (26%)
Query: 142 LNEMDKISPLSVR---------VM--DVCTPPPSPHSDT-YSMPLT 175
++ + + D+ TPP +P + +T
Sbjct: 104 YGSIEVSNREIIEFQHRIGVDIGTFLDIPTPPDAPREQAVKELEIT 149
>1inp_A Inositol polyphosphate 1-phosphatase; hydrolase(phosphoric
monoester); 2.30A {Bos taurus} SCOP: e.7.1.1
Length = 400
Score = 27.7 bits (61), Expect = 3.3
Identities = 8/55 (14%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 54 LKDLMVTALQA--EGENVSK--LEKADILELTVQHLQKMRRQQRLASNPVTDADR 104
+ D++ L+ + N+++ ++ + +L ++ ++ + ++ A + T AD
Sbjct: 1 MSDILQELLRVSEKAANIARACRQQETLFQLLIEEKKEGEKNKKFAVDFKTLADV 55
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin,
immune system; HET: ENH; 1.90A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H*
1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H*
3e8u_H 1fj1_B 1cl7_H
Length = 219
Score = 27.1 bits (61), Expect = 3.9
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 157 DVCTPPPSPHSDTY---SMPLTPASSGSSQVDTC 187
V T P SD Y S P+S S+ TC
Sbjct: 168 GVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTC 201
>3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis,
hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A
{Homo sapiens} PDB: 1xkt_A
Length = 283
Score = 27.2 bits (60), Expect = 4.4
Identities = 7/52 (13%), Positives = 16/52 (30%)
Query: 58 MVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNPVTDADRFRAGF 109
M + LQA+ + + + ++ R P +A+
Sbjct: 100 MCSQLQAQQSPAPTHNSLFLFDGSPTYVLAYTGSYRAKLTPGCEAEAETEAI 151
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative,
dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x
morifolium} PDB: 2e1u_A 2e1t_A
Length = 454
Score = 26.8 bits (59), Expect = 5.2
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 149 SPLSVRVMDVCT-PPPSPHSDTYSMPLTP 176
S + V++ PP S+ LT
Sbjct: 3 SLPILTVLEQSQVSPPPDTLGDKSLQLTF 31
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S
disease, immunotherapies, APP, immune system; 1.59A {Mus
musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H
2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H*
2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H*
1n6q_H* 1t03_H* ...
Length = 228
Score = 26.3 bits (59), Expect = 6.3
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 157 DVCTPPPSPHSDTY---SMPLTPASSGSSQVDTC 187
V T P SD Y S +S+ S+ TC
Sbjct: 174 GVHTFPAVLQSDLYTLSSSVTVTSSTWPSESITC 207
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter
jejuni}
Length = 252
Score = 26.3 bits (58), Expect = 6.5
Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 23 QPISRTYQYRKVMKPMLERKRRARIN-----RCLDELKDLMVTALQAEGENVSKLE--KA 75
+ IS T + + PML + + + + + A+ +N+ K
Sbjct: 9 KSISDT-EVSEFFAPMLRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTK 67
Query: 76 DILELTVQHLQKMRRQQRLASNPVTDAD 103
++ L + +++ L + + A
Sbjct: 68 ELDRAKDAILVNVYQEKILNTIKIDAAK 95
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 26.7 bits (58), Expect = 6.7
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 35 MKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRL 94
+ R++ ++ + L L + + + +S +E LT + L +R+Q++
Sbjct: 65 NNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYV-QKTLTDEELADWKRRQQI 123
Query: 95 ASN---PVTDADRFRAGFTTCA 113
A P DR T+ A
Sbjct: 124 ACIGGPPNICLDRLENWITSLA 145
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 8.1
Identities = 8/55 (14%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 41 RKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLA 95
++R R+ LD +M + + + + + + + ++K + R+A
Sbjct: 92 EEQRKRLQE-LDAASKVMEQEWREKAKK----DLEEWNQRQSEQVEKNKINNRIA 141
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 25.7 bits (57), Expect = 9.5
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 9/54 (16%)
Query: 158 VCTPPPSPHSDTYSM----PLTPASSGSSQVDTCDYTSQYKMYESMPSPKSVWR 207
V T P+ + + LT S TC T +E KS+
Sbjct: 168 VDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVT-----HEGDTVEKSLSP 216
>2ql2_B Neurod1, neurogenic differentiation factor 1;
basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Length = 60
Score = 24.1 bits (53), Expect = 9.8
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 40 ERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTV---QHLQKM 88
ER R +N LD L+ ++ + + KL K + L L L ++
Sbjct: 10 ERNRMHGLNAALDNLRKVVPCYSKTQ-----KLSKIETLRLAKNYIWALSEI 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.129 0.377
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,073,792
Number of extensions: 168850
Number of successful extensions: 572
Number of sequences better than 10.0: 1
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 44
Length of query: 209
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 120
Effective length of database: 4,216,824
Effective search space: 506018880
Effective search space used: 506018880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)