RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3614
(209 letters)
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 54.4 bits (131), Expect = 4e-11
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMR 89
+ R+ +ER+RR +IN + +L ++ + + S K IL ++Q++R
Sbjct: 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTK--SGQSKGGILSKASDYIQELR 60
Query: 90 RQQR 93
+
Sbjct: 61 QSNH 64
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 63
Score = 51.4 bits (123), Expect = 6e-10
Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91
++ E+ RR R+ L EL L+ + + + + KA +E ++++ +++
Sbjct: 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVS-AAPSKATTVEAACRYIRHLQQN 60
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 45.6 bits (108), Expect = 1e-07
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91
++ LERKRR I L+D + K +A IL+ +++Q MRR+
Sbjct: 2 KRAHHNALERKRRDHIKDSFHSLRDSV------PSLQGEKASRAQILDKATEYIQYMRRK 55
Query: 92 QR 93
Sbjct: 56 NH 57
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
9606]}
Length = 80
Score = 43.4 bits (102), Expect = 8e-07
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91
++ +E++ R+ IN + ELKDL+V +KL K+ +L + +++ ++
Sbjct: 6 KRTAHNAIEKRYRSSINDKIIELKDLVVG-------TEAKLNKSAVLRKAIDYIRFLQHS 58
Query: 92 QR 93
+
Sbjct: 59 NQ 60
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with
YRPW motif protein 1; HESR-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 55
Score = 42.5 bits (100), Expect = 8e-07
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 98 PVTDADRFRA-GFTTCANEVSKCLASTPGIDLRLGTK--LMSHLGQRLNE 144
A +R+ GF C EV++ L+ G+D + L+SHL ++
Sbjct: 5 AHALAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQ 54
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 42.2 bits (99), Expect = 2e-06
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQR 93
+E+ RRA + L++LK L+ G + S+ +L H++K+ R
Sbjct: 7 EMEKNRRAHLRLSLEKLKGLVPL-----GPDSSRHTTLSLLTKAKLHIKKLEDSDR 57
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 39.1 bits (91), Expect = 2e-05
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91
R+ M ER+R +++N + LK + +L K +IL +++++ ++
Sbjct: 12 RRKAATMRERRRLSKVNEAFETLKRSTSSN------PNQRLPKVEILRNAIRYIEGLQAL 65
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 38.7 bits (90), Expect = 4e-05
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91
++ +LER+RR + R L+D + E EN K K IL+ ++ ++ +
Sbjct: 6 KRRTHNVLERQRRNELKRSFFALRDQI-----PELENNEKAPKVVILKKATAYILSVQAE 60
Query: 92 QR 93
++
Sbjct: 61 EQ 62
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 29.3 bits (66), Expect = 0.047
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 44 RARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91
R+ IN + ELKDL++ +K+ K+ +L + +++ +++
Sbjct: 1 RSSINDKIIELKDLVMG-------TDAKMHKSGVLRKAIDYIKYLQQV 41
>d1xr0b_ b.55.1.2 (B:) FGFR substrate 2 (SNT-1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 129
Score = 29.5 bits (66), Expect = 0.13
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 3/102 (2%)
Query: 77 ILELTVQHLQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMS 136
I+ELT L R++ R+ + E + + GI
Sbjct: 30 IMELTDTELILYTRKRDSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQGI-FAFKCARAE 88
Query: 137 HLGQRLNEMDKISPLSVRVMDVCTPPPSPHSDTYSMPLTPAS 178
L L E + S+ V++ + H +P TP +
Sbjct: 89 ELFNMLQE--IMQNNSINVVEEPVVERNNHQTELEVPRTPRT 128
>d1inpa_ e.7.1.1 (A:) Inositol polyphosphate 1-phosphatase {Cow (Bos
taurus), brain [TaxId: 9913]}
Length = 400
Score = 27.7 bits (60), Expect = 1.0
Identities = 8/55 (14%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 54 LKDLMVTALQA--EGENVSKL--EKADILELTVQHLQKMRRQQRLASNPVTDADR 104
+ D++ L+ + N+++ ++ + +L ++ ++ + ++ A + T AD
Sbjct: 1 MSDILQELLRVSEKAANIARACRQQETLFQLLIEEKKEGEKNKKFAVDFKTLADV 55
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 27.0 bits (59), Expect = 1.7
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 106 RAGFTTCANEV--SKCLASTPGIDLRLGTKLMSHLGQRLNEMDKISPLSVRVMDVC 159
N K G+ RLGT ++ G + K++ R +++
Sbjct: 365 ACSIACNKNTCPGDKSALRPSGL--RLGTPALTSRGLLEKDFQKVAHFIHRGIELT 418
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 26.9 bits (59), Expect = 2.0
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 106 RAGFTTCANEV---SKCLASTPGIDLRLGTKLMSHLGQRLNEMDKISPLSVRVMD 157
RA T N V K T GI R+GT ++ G + E +++ V+D
Sbjct: 338 RANITVNKNSVPNDPKSPFVTSGI--RVGTPAITRRGFKEAEAKELAGWMCDVLD 390
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 26.1 bits (57), Expect = 3.1
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 106 RAGFTTCANEV---SKCLASTPGIDLRLGTKLMSHLGQRLNEMDKISPLSVRVMD 157
G T N + + T GI R+GT ++ G L EMD+I+ + V+
Sbjct: 333 EVGITVNKNTIPYDPESPFVTSGI--RIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 25.8 bits (55), Expect = 5.4
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 39 LERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNP 98
+ R + L+ + A+Q L+ +L L + L + + L+
Sbjct: 4 AATRARQKQRASLETMDK----AVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEA 59
Query: 99 VTDA 102
V
Sbjct: 60 VFFT 63
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia
coli [TaxId: 562]}
Length = 68
Score = 23.8 bits (52), Expect = 5.9
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 38 MLERKRRARINRCLDELKDLMVTALQ-AEGENVSKLEKADILELTV----QHLQKMRRQQ 92
ML + R + R ++ L + + A+ E + +S E A I++ V + + R
Sbjct: 3 MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 62
Query: 93 R 93
Sbjct: 63 D 63
>d1a62a1 a.140.3.1 (A:1-47) Rho termination factor, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 47
Score = 23.0 bits (50), Expect = 6.5
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 51 LDELKDLMVTALQ--AEG---ENVSKLEKADIL 78
L ELK+ V+ L E EN++++ K DI+
Sbjct: 3 LTELKNTPVSELITLGENMGLENLARMRKQDII 35
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC
{Escherichia coli [TaxId: 562]}
Length = 129
Score = 24.5 bits (53), Expect = 7.8
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 162 PPSPHSDTYSMPLTPASS 179
P + T P+T +S
Sbjct: 10 PVNLDLQTIRFPITAIAS 27
>d2fhea1 a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepatica
[TaxId: 6192]}
Length = 136
Score = 24.2 bits (52), Expect = 8.1
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Query: 44 RARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNPVTDAD 103
RAR++ DL + + + K L+ ++ L NP
Sbjct: 8 RARVSMIEGAAVDLRQGISRISYQPKFEQLKEGYLKDLPTTMKMW--SDFLGKNPYLRGT 65
Query: 104 RFRAG 108
Sbjct: 66 SVSHV 70
>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik
protein {Mouse (Mus musculus) [TaxId: 10090]}
Length = 128
Score = 24.1 bits (52), Expect = 8.7
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 72 LEKADILELTVQHLQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLG 131
+E D ++ +HLQK + Q S + + TC S L ST +
Sbjct: 36 VEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLELRSAALQSTQSQE---- 91
Query: 132 TKLMSHLGQRLNEMDKISPLSVRVMDVCTPPP 163
+L ++ K+ P+ ++ P
Sbjct: 92 -------EFKLEDLKKLEPILKNILTYNKEFP 116
>d2gsta1 a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 133
Score = 24.2 bits (52), Expect = 9.0
Identities = 8/65 (12%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 44 RARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNPVTDAD 103
R R + +++ D + + + +K + L+ + ++ + L P D
Sbjct: 9 RIRADIVENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLY--SEFLGKRPWFAGD 66
Query: 104 RFRAG 108
+
Sbjct: 67 KVTYV 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.129 0.377
Gapped
Lambda K H
0.267 0.0565 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 746,722
Number of extensions: 31965
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 24
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)