Query psy3615
Match_columns 211
No_of_seqs 245 out of 1364
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 21:06:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02332 HpaX 4-hydroxyphenyl 99.9 1.1E-25 2.4E-30 183.1 15.0 171 16-188 19-196 (412)
2 COG2814 AraJ Arabinose efflux 99.9 9.9E-25 2.1E-29 172.5 13.1 161 20-182 28-189 (394)
3 TIGR00893 2A0114 d-galactonate 99.9 3.1E-24 6.6E-29 172.2 13.1 170 16-187 5-175 (399)
4 TIGR00894 2A0114euk Na(+)-depe 99.9 5.9E-24 1.3E-28 175.4 14.7 163 34-196 70-234 (465)
5 KOG2532|consensus 99.9 9.3E-24 2E-28 172.5 14.9 175 32-206 65-241 (466)
6 TIGR00903 2A0129 major facilit 99.9 5.1E-24 1.1E-28 170.7 13.1 167 19-188 5-172 (368)
7 KOG1330|consensus 99.9 2.4E-25 5.3E-30 176.2 3.8 171 14-186 42-214 (493)
8 COG2271 UhpC Sugar phosphate p 99.9 7E-24 1.5E-28 166.5 11.2 169 18-188 42-213 (448)
9 PRK14995 methyl viologen resis 99.9 8.9E-24 1.9E-28 175.6 12.0 169 16-186 17-187 (495)
10 PRK03545 putative arabinose tr 99.9 2.9E-23 6.2E-28 167.7 13.4 159 25-185 29-188 (390)
11 PRK11663 regulatory protein Uh 99.9 4.1E-23 8.9E-28 169.1 12.0 167 18-186 36-203 (434)
12 PRK15403 multidrug efflux syst 99.9 5.5E-23 1.2E-27 167.3 12.0 165 20-186 31-196 (413)
13 PRK10213 nepI ribonucleoside t 99.9 1.4E-22 3.1E-27 163.9 13.9 157 27-185 42-199 (394)
14 PRK10091 MFS transport protein 99.9 1.2E-22 2.6E-27 163.7 12.9 162 22-185 20-182 (382)
15 PRK09556 uhpT sugar phosphate 99.9 6.8E-23 1.5E-27 169.2 11.6 171 16-186 40-217 (467)
16 TIGR00881 2A0104 phosphoglycer 99.9 3.6E-23 7.7E-28 165.4 8.8 168 16-185 6-175 (379)
17 TIGR00710 efflux_Bcr_CflA drug 99.9 3.7E-22 8E-27 160.4 13.9 164 21-186 21-185 (385)
18 PF07690 MFS_1: Major Facilita 99.9 7.8E-23 1.7E-27 162.2 8.6 162 21-184 12-175 (352)
19 TIGR00890 2A0111 Oxalate/Forma 99.9 3.6E-22 7.9E-27 159.5 12.4 163 20-185 18-181 (377)
20 PRK11551 putative 3-hydroxyphe 99.9 2.1E-22 4.6E-27 163.3 11.1 167 18-186 28-195 (406)
21 TIGR00711 efflux_EmrB drug res 99.9 2.1E-22 4.5E-27 166.7 10.0 166 17-184 14-180 (485)
22 PRK09705 cynX putative cyanate 99.9 6.4E-22 1.4E-26 160.1 12.0 150 22-174 26-177 (393)
23 PRK11102 bicyclomycin/multidru 99.9 1.1E-21 2.5E-26 157.4 13.3 162 22-185 8-170 (377)
24 TIGR00891 2A0112 putative sial 99.9 4.9E-22 1.1E-26 160.5 10.7 165 18-185 25-192 (405)
25 PRK10473 multidrug efflux syst 99.9 2.3E-21 5.1E-26 156.6 14.2 159 25-185 23-182 (392)
26 PRK10077 xylE D-xylose transpo 99.9 1E-21 2.2E-26 162.5 12.1 153 33-186 48-219 (479)
27 PRK15402 multidrug efflux syst 99.9 4.5E-21 9.8E-26 155.6 14.7 168 17-186 25-193 (406)
28 TIGR01299 synapt_SV2 synaptic 99.9 9.4E-22 2E-26 168.4 11.1 165 20-187 182-360 (742)
29 TIGR00900 2A0121 H+ Antiporter 99.9 1.9E-21 4.2E-26 154.8 11.3 156 21-178 15-176 (365)
30 TIGR00895 2A0115 benzoate tran 99.9 3.4E-21 7.4E-26 155.1 11.0 164 21-186 33-197 (398)
31 PRK11652 emrD multidrug resist 99.9 8.7E-21 1.9E-25 153.4 13.4 164 21-186 24-188 (394)
32 PRK12307 putative sialic acid 99.9 2.1E-21 4.5E-26 158.4 9.5 149 18-168 31-180 (426)
33 TIGR00898 2A0119 cation transp 99.9 1E-20 2.2E-25 157.6 13.6 155 26-186 110-268 (505)
34 TIGR00886 2A0108 nitrite extru 99.8 1E-20 2.2E-25 151.2 12.3 165 18-185 14-192 (366)
35 PRK11043 putative transporter; 99.8 1.3E-20 2.9E-25 152.6 12.5 158 20-179 21-179 (401)
36 KOG2533|consensus 99.8 2.2E-20 4.7E-25 153.4 13.5 165 31-197 72-243 (495)
37 PRK10642 proline/glycine betai 99.8 4.5E-21 9.7E-26 159.3 9.4 168 16-186 27-217 (490)
38 PRK10504 putative transporter; 99.8 1.3E-20 2.8E-25 155.8 12.0 165 19-185 24-189 (471)
39 PRK10406 alpha-ketoglutarate t 99.8 6.1E-21 1.3E-25 156.2 9.7 156 16-173 33-211 (432)
40 PRK11273 glpT sn-glycerol-3-ph 99.8 2E-20 4.3E-25 154.0 12.4 167 19-186 43-213 (452)
41 TIGR00879 SP MFS transporter, 99.8 3.2E-20 6.9E-25 152.6 12.3 165 20-185 43-220 (481)
42 PRK03893 putative sialic acid 99.8 1.4E-20 3E-25 156.4 10.0 149 18-168 33-182 (496)
43 TIGR00887 2A0109 phosphate:H+ 99.8 1.2E-19 2.7E-24 151.1 15.6 149 36-187 52-230 (502)
44 PRK11646 multidrug resistance 99.8 5.7E-20 1.2E-24 149.0 13.1 159 22-183 28-187 (400)
45 TIGR00806 rfc RFC reduced fola 99.8 3.1E-20 6.8E-25 149.7 11.2 161 20-184 41-205 (511)
46 PRK10054 putative transporter; 99.8 4.2E-20 9E-25 149.6 11.9 159 23-184 26-185 (395)
47 PRK03699 putative transporter; 99.8 3.2E-20 6.9E-25 150.2 10.9 155 21-177 23-179 (394)
48 TIGR00712 glpT glycerol-3-phos 99.8 4.5E-20 9.8E-25 151.3 11.2 167 19-186 41-211 (438)
49 TIGR00899 2A0120 sugar efflux 99.8 1.2E-19 2.7E-24 145.3 13.4 159 27-187 20-182 (375)
50 PRK12382 putative transporter; 99.8 1.5E-19 3.3E-24 146.0 13.6 141 30-170 41-188 (392)
51 KOG3764|consensus 99.8 3.2E-19 7E-24 139.2 14.2 150 33-184 99-250 (464)
52 PRK05122 major facilitator sup 99.8 1.1E-19 2.3E-24 147.2 11.9 152 21-172 31-190 (399)
53 PRK09874 drug efflux system pr 99.8 1.8E-19 3.9E-24 146.1 13.0 160 23-185 32-197 (408)
54 TIGR00892 2A0113 monocarboxyla 99.8 1.1E-19 2.5E-24 149.6 11.6 161 19-182 33-195 (455)
55 PLN00028 nitrate transmembrane 99.8 1.4E-19 2.9E-24 149.9 11.4 159 24-185 55-223 (476)
56 PRK11195 lysophospholipid tran 99.8 1.2E-19 2.6E-24 146.8 10.7 149 30-185 28-177 (393)
57 TIGR00885 fucP L-fucose:H+ sym 99.8 2.2E-19 4.7E-24 146.0 12.0 156 22-177 20-203 (410)
58 PRK09952 shikimate transporter 99.8 6.7E-20 1.4E-24 150.3 8.3 154 16-172 33-211 (438)
59 PRK15075 citrate-proton sympor 99.8 9.1E-20 2E-24 149.4 8.6 152 15-168 25-199 (434)
60 TIGR00897 2A0118 polyol permea 99.8 8E-19 1.7E-23 142.4 12.9 153 31-183 39-195 (402)
61 PRK15034 nitrate/nitrite trans 99.8 6.1E-19 1.3E-23 143.7 12.0 167 17-184 46-235 (462)
62 PRK10207 dipeptide/tripeptide 99.8 2.7E-19 5.9E-24 148.3 9.8 143 25-169 35-182 (489)
63 COG2223 NarK Nitrate/nitrite t 99.8 2.6E-19 5.6E-24 140.9 9.0 171 16-187 25-199 (417)
64 TIGR00924 yjdL_sub1_fam amino 99.8 5.6E-19 1.2E-23 146.1 11.4 152 23-176 29-187 (475)
65 cd06174 MFS The Major Facilita 99.8 8.6E-19 1.9E-23 138.6 11.4 156 20-177 14-170 (352)
66 KOG0255|consensus 99.8 1.7E-18 3.7E-23 144.9 12.8 150 33-187 111-260 (521)
67 TIGR00896 CynX cyanate transpo 99.8 1.9E-18 4.1E-23 137.9 12.1 147 22-172 17-166 (355)
68 TIGR00805 oat sodium-independe 99.8 2.9E-19 6.3E-24 152.0 7.1 160 20-179 48-279 (633)
69 PRK10133 L-fucose transporter; 99.8 1.5E-18 3.2E-23 142.3 11.0 134 21-154 42-177 (438)
70 PRK03633 putative MFS family t 99.8 2.6E-18 5.7E-23 138.4 12.2 139 19-159 20-159 (381)
71 PRK10489 enterobactin exporter 99.8 2.7E-18 5.9E-23 139.9 10.2 164 21-185 33-200 (417)
72 PTZ00207 hypothetical protein; 99.8 1E-17 2.2E-22 140.1 12.7 157 25-185 47-209 (591)
73 TIGR00880 2_A_01_02 Multidrug 99.7 1.6E-17 3.5E-22 114.6 9.8 136 46-183 4-140 (141)
74 KOG0254|consensus 99.7 2.9E-17 6.4E-22 137.2 13.2 143 41-187 90-235 (513)
75 TIGR00901 2A0125 AmpG-related 99.7 4.2E-17 9E-22 130.2 13.4 160 23-184 6-181 (356)
76 PRK15011 sugar efflux transpor 99.7 3.3E-17 7.1E-22 132.7 12.7 158 26-186 37-199 (393)
77 KOG2615|consensus 99.7 3.3E-17 7.1E-22 127.5 11.8 115 38-155 66-181 (451)
78 TIGR00883 2A0106 metabolite-pr 99.7 9.3E-18 2E-22 134.8 7.3 158 15-174 3-184 (394)
79 PRK09584 tppB putative tripept 99.7 5.8E-17 1.3E-21 134.9 11.1 148 25-173 42-193 (500)
80 PRK15462 dipeptide/tripeptide 99.7 7E-17 1.5E-21 133.0 10.7 151 25-176 30-184 (493)
81 PF06609 TRI12: Fungal trichot 99.7 3.9E-16 8.5E-21 130.2 12.6 150 28-181 67-217 (599)
82 PRK11128 putative 3-phenylprop 99.7 2.8E-16 6.1E-21 126.7 10.9 146 22-173 21-171 (382)
83 KOG0569|consensus 99.7 1.6E-15 3.6E-20 123.6 14.7 145 42-187 62-210 (485)
84 PRK10642 proline/glycine betai 99.7 1.1E-15 2.3E-20 127.3 13.6 161 26-187 272-435 (490)
85 TIGR00889 2A0110 nucleoside tr 99.7 1.6E-15 3.5E-20 123.7 14.1 146 40-185 251-406 (418)
86 PF00083 Sugar_tr: Sugar (and 99.7 5.9E-19 1.3E-23 145.1 -6.4 146 39-187 45-197 (451)
87 PRK11902 ampG muropeptide tran 99.7 1.5E-15 3.2E-20 123.4 13.4 154 29-185 23-185 (402)
88 TIGR00882 2A0105 oligosacchari 99.7 1.4E-15 2.9E-20 123.3 12.3 156 26-184 24-186 (396)
89 TIGR00902 2A0127 phenyl propri 99.7 7.6E-16 1.7E-20 124.2 10.7 144 20-169 19-167 (382)
90 PRK08633 2-acyl-glycerophospho 99.7 4.9E-16 1.1E-20 140.8 10.1 157 30-186 35-204 (1146)
91 PRK06814 acylglycerophosphoeth 99.6 2.4E-15 5.2E-20 136.4 13.8 151 31-184 42-197 (1140)
92 PRK05122 major facilitator sup 99.6 6.9E-15 1.5E-19 119.1 14.1 141 41-183 250-391 (399)
93 PRK09528 lacY galactoside perm 99.6 6.3E-15 1.4E-19 120.3 13.1 146 36-183 258-405 (420)
94 PRK11010 ampG muropeptide tran 99.6 6.1E-15 1.3E-19 122.6 13.1 155 28-185 35-198 (491)
95 PRK10489 enterobactin exporter 99.6 3.2E-15 7E-20 121.8 10.6 156 28-185 247-403 (417)
96 PRK09556 uhpT sugar phosphate 99.6 4.9E-15 1.1E-19 122.6 11.6 154 26-179 280-447 (467)
97 KOG2504|consensus 99.6 2.9E-15 6.2E-20 124.2 10.0 154 26-182 67-222 (509)
98 TIGR01299 synapt_SV2 synaptic 99.6 1.1E-14 2.3E-19 125.4 13.7 140 42-185 597-737 (742)
99 PRK09528 lacY galactoside perm 99.6 2.3E-15 4.9E-20 122.9 8.9 159 23-184 29-194 (420)
100 COG0738 FucP Fucose permease [ 99.6 7.5E-15 1.6E-19 115.4 11.2 157 23-179 31-208 (422)
101 TIGR00890 2A0111 Oxalate/Forma 99.6 8E-15 1.7E-19 117.1 11.3 143 31-173 231-374 (377)
102 PRK15011 sugar efflux transpor 99.6 1.2E-14 2.7E-19 117.6 12.4 150 27-179 239-389 (393)
103 PRK03893 putative sialic acid 99.6 5.9E-15 1.3E-19 122.8 9.6 146 27-172 298-444 (496)
104 cd06174 MFS The Major Facilita 99.6 1.3E-14 2.7E-19 114.8 11.1 146 31-178 202-349 (352)
105 PRK11551 putative 3-hydroxyphe 99.6 3.8E-14 8.2E-19 115.1 13.4 147 31-179 246-394 (406)
106 PRK09874 drug efflux system pr 99.6 4.8E-14 1E-18 114.4 13.9 139 42-182 260-399 (408)
107 PRK12382 putative transporter; 99.6 6.1E-14 1.3E-18 113.4 13.9 143 34-180 245-388 (392)
108 KOG0253|consensus 99.6 1.2E-14 2.5E-19 113.2 8.8 159 25-187 98-256 (528)
109 TIGR00889 2A0110 nucleoside tr 99.6 6.8E-14 1.5E-18 114.2 12.9 153 24-185 22-183 (418)
110 KOG0252|consensus 99.6 1.6E-14 3.6E-19 115.1 8.8 150 36-186 80-250 (538)
111 TIGR00792 gph sugar (Glycoside 99.6 1.3E-14 2.9E-19 118.7 8.5 164 22-185 17-198 (437)
112 TIGR00899 2A0120 sugar efflux 99.6 5.9E-14 1.3E-18 112.5 12.0 148 28-178 223-371 (375)
113 PRK03545 putative arabinose tr 99.6 7.5E-14 1.6E-18 112.9 12.6 151 27-181 228-380 (390)
114 TIGR00879 SP MFS transporter, 99.5 3.2E-14 6.8E-19 117.0 9.6 157 28-184 307-473 (481)
115 PRK03699 putative transporter; 99.5 6.6E-14 1.4E-18 113.4 10.3 151 25-178 226-377 (394)
116 TIGR00892 2A0113 monocarboxyla 99.5 1.7E-14 3.7E-19 119.0 6.6 142 32-175 268-415 (455)
117 PF05977 MFS_3: Transmembrane 99.5 9.9E-14 2.2E-18 115.6 10.1 147 30-176 35-185 (524)
118 PRK03633 putative MFS family t 99.5 3.3E-13 7E-18 108.9 12.8 142 31-177 226-368 (381)
119 PRK10077 xylE D-xylose transpo 99.5 1.1E-13 2.4E-18 114.6 10.0 156 29-184 295-460 (479)
120 TIGR00883 2A0106 metabolite-pr 99.5 1.6E-13 3.5E-18 110.2 9.4 144 27-170 242-390 (394)
121 PRK11663 regulatory protein Uh 99.5 4.3E-13 9.4E-18 110.0 12.0 154 28-181 267-424 (434)
122 TIGR00891 2A0112 putative sial 99.5 1.5E-13 3.2E-18 111.1 9.1 138 27-165 261-400 (405)
123 COG3104 PTR2 Dipeptide/tripept 99.5 3.2E-13 6.9E-18 109.1 10.2 147 33-179 54-204 (498)
124 PRK11273 glpT sn-glycerol-3-ph 99.5 3.4E-13 7.3E-18 111.2 10.6 154 26-179 275-433 (452)
125 PRK09705 cynX putative cyanate 99.5 4E-13 8.6E-18 108.9 10.7 155 27-185 228-385 (393)
126 TIGR00902 2A0127 phenyl propri 99.5 1.1E-12 2.4E-17 105.9 13.0 144 28-176 229-374 (382)
127 PRK09952 shikimate transporter 99.5 1E-12 2.2E-17 108.0 12.9 156 27-183 273-434 (438)
128 TIGR00893 2A0114 d-galactonate 99.5 8.5E-13 1.8E-17 105.8 11.3 150 28-178 239-396 (399)
129 PRK15075 citrate-proton sympor 99.4 1E-12 2.2E-17 107.9 11.7 134 27-160 261-398 (434)
130 PF11700 ATG22: Vacuole efflux 99.4 3.3E-12 7E-17 105.5 14.2 153 27-179 304-466 (477)
131 PRK12307 putative sialic acid 99.4 8.7E-13 1.9E-17 107.7 10.3 131 32-162 258-389 (426)
132 TIGR00897 2A0118 polyol permea 99.4 2.8E-12 6E-17 104.2 13.0 148 30-179 247-399 (402)
133 PRK11010 ampG muropeptide tran 99.4 1.1E-12 2.5E-17 109.1 10.6 154 27-180 245-402 (491)
134 TIGR01301 GPH_sucrose GPH fami 99.4 1.6E-12 3.4E-17 107.0 11.1 153 31-185 30-222 (477)
135 PF05977 MFS_3: Transmembrane 99.4 1.5E-12 3.3E-17 108.5 10.8 147 30-178 244-391 (524)
136 TIGR00712 glpT glycerol-3-phos 99.4 3.1E-12 6.8E-17 105.1 11.2 159 27-185 274-437 (438)
137 COG2814 AraJ Arabinose efflux 99.4 6.2E-12 1.4E-16 100.1 12.3 159 20-181 227-386 (394)
138 PRK09669 putative symporter Ya 99.4 1.8E-12 3.9E-17 106.7 8.3 161 24-184 29-207 (444)
139 COG2271 UhpC Sugar phosphate p 99.4 3.8E-12 8.3E-17 100.9 9.5 160 23-182 271-435 (448)
140 TIGR02718 sider_RhtX_FptX side 99.4 8.3E-12 1.8E-16 101.0 11.6 159 25-183 21-186 (390)
141 PRK10054 putative transporter; 99.4 1.1E-11 2.4E-16 100.5 11.7 152 34-186 238-389 (395)
142 PRK11128 putative 3-phenylprop 99.4 1.9E-11 4.1E-16 98.7 12.9 137 33-173 233-371 (382)
143 TIGR00900 2A0121 H+ Antiporter 99.3 3.9E-12 8.5E-17 101.2 8.7 124 33-158 240-365 (365)
144 TIGR00882 2A0105 oligosacchari 99.3 2.4E-11 5.3E-16 98.5 13.4 142 36-179 250-393 (396)
145 PRK10504 putative transporter; 99.3 7.3E-12 1.6E-16 103.7 10.5 128 32-159 289-418 (471)
146 PRK15402 multidrug efflux syst 99.3 2.5E-11 5.3E-16 98.7 13.1 147 30-177 241-391 (406)
147 PRK10406 alpha-ketoglutarate t 99.3 2E-11 4.4E-16 100.1 12.6 154 25-179 264-422 (432)
148 TIGR00788 fbt folate/biopterin 99.3 1.8E-11 4E-16 101.4 11.7 155 26-185 47-212 (468)
149 TIGR00792 gph sugar (Glycoside 99.3 9.5E-11 2.1E-15 96.0 15.9 122 38-160 255-384 (437)
150 COG2807 CynX Cyanate permease 99.3 2.2E-11 4.8E-16 94.9 11.3 154 22-179 29-184 (395)
151 TIGR02718 sider_RhtX_FptX side 99.3 3.6E-11 7.8E-16 97.3 12.4 148 27-175 231-385 (390)
152 TIGR00898 2A0119 cation transp 99.3 5E-11 1.1E-15 99.6 13.1 137 46-185 361-498 (505)
153 PF05631 DUF791: Protein of un 99.3 1.8E-10 3.9E-15 90.1 15.0 152 32-186 61-221 (354)
154 PLN00028 nitrate transmembrane 99.3 1E-11 2.2E-16 103.1 8.6 148 28-179 276-431 (476)
155 PRK10091 MFS transport protein 99.3 3.8E-11 8.1E-16 97.0 11.6 150 28-179 223-374 (382)
156 COG2270 Permeases of the major 99.3 6.1E-11 1.3E-15 94.2 12.1 144 32-177 280-425 (438)
157 PF06813 Nodulin-like: Nodulin 99.3 6.5E-11 1.4E-15 89.4 11.6 132 23-156 20-157 (250)
158 TIGR00887 2A0109 phosphate:H+ 99.3 2.6E-11 5.7E-16 101.3 10.3 137 48-185 343-492 (502)
159 PRK11902 ampG muropeptide tran 99.3 1E-10 2.2E-15 95.1 12.9 147 29-179 234-388 (402)
160 PRK10213 nepI ribonucleoside t 99.3 1.2E-10 2.5E-15 94.6 13.0 145 28-176 240-386 (394)
161 KOG2325|consensus 99.3 7.8E-11 1.7E-15 96.1 11.8 154 34-188 65-236 (488)
162 PF01306 LacY_symp: LacY proto 99.3 1.3E-10 2.8E-15 93.5 12.7 146 38-185 257-404 (412)
163 KOG2504|consensus 99.3 1.3E-11 2.9E-16 102.5 7.0 152 26-179 319-474 (509)
164 PRK08633 2-acyl-glycerophospho 99.2 4.7E-11 1E-15 108.7 10.8 144 27-172 255-401 (1146)
165 TIGR00895 2A0115 benzoate tran 99.2 3.5E-11 7.5E-16 96.9 8.6 123 29-153 274-397 (398)
166 PRK09848 glucuronide transport 99.2 1.9E-10 4.2E-15 94.7 13.0 130 30-159 254-391 (448)
167 TIGR01272 gluP glucose/galacto 99.2 2.3E-10 5E-15 89.9 12.8 130 34-167 172-301 (310)
168 PRK11646 multidrug resistance 99.2 1.1E-10 2.3E-15 95.0 11.2 147 29-177 232-384 (400)
169 TIGR00881 2A0104 phosphoglycer 99.2 4.7E-11 1E-15 95.4 8.1 136 28-163 240-379 (379)
170 PRK11195 lysophospholipid tran 99.2 2E-10 4.4E-15 93.1 11.5 145 30-178 231-377 (393)
171 PRK10429 melibiose:sodium symp 99.2 2.8E-11 6.2E-16 100.4 6.2 162 23-184 25-204 (473)
172 TIGR02332 HpaX 4-hydroxyphenyl 99.2 6.3E-11 1.4E-15 96.7 8.0 142 26-169 264-409 (412)
173 PRK10133 L-fucose transporter; 99.2 4.8E-10 1E-14 92.3 13.2 138 32-173 287-425 (438)
174 COG2223 NarK Nitrate/nitrite t 99.2 1E-10 2.2E-15 92.8 8.5 154 27-181 241-401 (417)
175 TIGR00711 efflux_EmrB drug res 99.2 9E-11 2E-15 97.4 8.3 130 28-157 279-411 (485)
176 PRK06814 acylglycerophosphoeth 99.1 1.5E-10 3.2E-15 105.5 9.0 149 25-173 246-414 (1140)
177 PRK10473 multidrug efflux syst 99.1 6E-10 1.3E-14 90.2 11.5 134 31-170 230-363 (392)
178 KOG0569|consensus 99.1 6.9E-10 1.5E-14 91.1 11.5 158 29-187 294-460 (485)
179 PF03825 Nuc_H_symport: Nucleo 99.1 1.5E-09 3.3E-14 88.1 13.5 150 33-183 235-397 (400)
180 TIGR00896 CynX cyanate transpo 99.1 2.5E-10 5.3E-15 91.2 8.6 125 31-158 223-350 (355)
181 PRK14995 methyl viologen resis 99.1 2.3E-10 4.9E-15 95.6 8.6 128 28-155 283-412 (495)
182 TIGR00710 efflux_Bcr_CflA drug 99.1 1.1E-09 2.3E-14 88.1 11.9 132 30-163 232-368 (385)
183 PF13347 MFS_2: MFS/sugar tran 99.1 4.9E-11 1.1E-15 97.8 4.0 158 26-183 23-200 (428)
184 TIGR00894 2A0114euk Na(+)-depe 99.1 4.5E-10 9.6E-15 93.0 8.2 154 25-179 282-448 (465)
185 PRK15034 nitrate/nitrite trans 99.1 4.4E-09 9.5E-14 86.4 13.8 136 46-181 292-454 (462)
186 KOG3762|consensus 99.1 4.4E-10 9.6E-15 91.7 7.8 146 32-179 398-545 (618)
187 KOG4686|consensus 99.0 1.3E-09 2.8E-14 82.8 8.9 126 29-158 289-416 (459)
188 PRK11043 putative transporter; 99.0 2.8E-09 6E-14 86.5 11.6 131 30-161 228-362 (401)
189 PRK09669 putative symporter Ya 99.0 1.3E-08 2.9E-13 83.8 15.5 120 40-159 264-391 (444)
190 PRK11102 bicyclomycin/multidru 99.0 4E-09 8.7E-14 84.8 12.2 122 30-152 220-345 (377)
191 TIGR00788 fbt folate/biopterin 99.0 2.6E-09 5.6E-14 88.6 10.5 126 33-158 281-415 (468)
192 PRK10429 melibiose:sodium symp 99.0 8.8E-09 1.9E-13 85.6 13.6 122 38-159 264-396 (473)
193 PF07690 MFS_1: Major Facilita 99.0 2E-09 4.3E-14 85.3 8.5 119 29-147 231-352 (352)
194 TIGR00901 2A0125 AmpG-related 99.0 1.2E-09 2.5E-14 87.3 7.0 111 28-139 233-354 (356)
195 PF03825 Nuc_H_symport: Nucleo 99.0 4.7E-09 1E-13 85.2 10.3 160 21-185 18-183 (400)
196 KOG0253|consensus 99.0 1.2E-09 2.6E-14 85.7 6.0 128 49-180 390-518 (528)
197 TIGR00926 2A1704 Peptide:H+ sy 99.0 1.2E-08 2.6E-13 87.4 12.4 155 25-179 8-180 (654)
198 COG0477 ProP Permeases of the 98.9 1.1E-08 2.3E-13 78.7 10.2 144 29-172 26-176 (338)
199 PF01306 LacY_symp: LacY proto 98.9 7.9E-10 1.7E-14 89.0 3.4 156 26-184 29-191 (412)
200 TIGR00903 2A0129 major facilit 98.9 2E-08 4.4E-13 80.8 11.1 144 26-178 214-362 (368)
201 PRK11462 putative transporter; 98.9 1.6E-08 3.4E-13 83.8 10.5 160 25-184 30-207 (460)
202 TIGR00924 yjdL_sub1_fam amino 98.8 8.2E-08 1.8E-12 79.9 13.2 141 42-182 314-469 (475)
203 COG2807 CynX Cyanate permease 98.8 6.6E-08 1.4E-12 75.8 11.7 148 29-179 232-383 (395)
204 PF13347 MFS_2: MFS/sugar tran 98.8 3.9E-08 8.3E-13 80.7 10.4 125 34-159 255-387 (428)
205 PRK11462 putative transporter; 98.8 1E-07 2.3E-12 79.0 12.8 121 39-159 262-390 (460)
206 COG2211 MelB Na+/melibiose sym 98.8 2.6E-08 5.6E-13 81.3 8.9 162 25-186 33-212 (467)
207 KOG2816|consensus 98.8 5.6E-08 1.2E-12 80.0 10.6 133 48-187 70-205 (463)
208 PRK09584 tppB putative tripept 98.8 4.3E-08 9.2E-13 82.1 10.1 138 42-179 318-477 (500)
209 PF03137 OATP: Organic Anion T 98.8 7.4E-10 1.6E-14 92.9 -0.6 159 23-181 21-250 (539)
210 TIGR00885 fucP L-fucose:H+ sym 98.8 1.5E-07 3.2E-12 77.0 12.5 126 37-166 266-397 (410)
211 KOG2563|consensus 98.8 8E-08 1.7E-12 77.3 10.5 153 32-185 72-239 (480)
212 PRK09848 glucuronide transport 98.8 5E-08 1.1E-12 80.5 9.5 128 25-152 29-173 (448)
213 PRK11652 emrD multidrug resist 98.7 2.1E-07 4.5E-12 75.4 12.2 127 30-157 233-361 (394)
214 PRK10207 dipeptide/tripeptide 98.7 1.9E-07 4.2E-12 77.9 11.1 138 42-179 311-474 (489)
215 TIGR00886 2A0108 nitrite extru 98.7 4E-08 8.8E-13 78.5 6.6 115 27-142 248-365 (366)
216 PF03209 PUCC: PUCC protein; 98.7 4.2E-07 9.2E-12 72.6 11.5 132 31-163 6-158 (403)
217 PF00083 Sugar_tr: Sugar (and 98.7 3E-10 6.6E-15 93.5 -6.5 161 24-186 272-441 (451)
218 KOG3764|consensus 98.7 4.1E-08 8.8E-13 77.8 5.7 147 31-179 297-452 (464)
219 PF03209 PUCC: PUCC protein; 98.6 1.2E-06 2.6E-11 70.1 13.3 150 27-176 231-393 (403)
220 COG0738 FucP Fucose permease [ 98.6 4E-07 8.6E-12 72.4 10.4 139 31-174 263-402 (422)
221 PF03092 BT1: BT1 family; Int 98.6 1.9E-07 4.2E-12 76.7 8.9 156 27-183 12-177 (433)
222 PF05978 UNC-93: Ion channel r 98.6 6.1E-07 1.3E-11 63.1 10.1 114 37-153 34-148 (156)
223 KOG2532|consensus 98.6 5.5E-08 1.2E-12 80.3 5.5 160 20-181 274-447 (466)
224 COG2211 MelB Na+/melibiose sym 98.6 3.9E-07 8.4E-12 74.6 10.2 127 32-158 264-398 (467)
225 PF11700 ATG22: Vacuole efflux 98.6 3.8E-06 8.3E-11 69.8 14.9 146 41-186 71-252 (477)
226 KOG4686|consensus 98.5 3.6E-09 7.8E-14 80.4 -3.7 131 26-156 65-198 (459)
227 PRK15403 multidrug efflux syst 98.5 1.7E-06 3.8E-11 70.7 11.5 146 29-176 243-392 (413)
228 KOG0254|consensus 98.5 9.9E-07 2.1E-11 74.2 10.1 155 29-185 319-487 (513)
229 PF06779 DUF1228: Protein of u 98.5 1.3E-07 2.7E-12 59.1 3.4 77 20-98 7-83 (85)
230 TIGR01272 gluP glucose/galacto 98.5 5.3E-07 1.1E-11 70.9 7.6 85 93-177 8-109 (310)
231 TIGR01301 GPH_sucrose GPH fami 98.4 8.6E-06 1.9E-10 67.6 13.9 142 44-185 309-475 (477)
232 KOG3626|consensus 98.4 2.1E-07 4.5E-12 79.5 3.9 163 24-186 116-348 (735)
233 KOG0255|consensus 98.3 1.7E-05 3.7E-10 66.8 13.7 141 48-189 358-500 (521)
234 PF01770 Folate_carrier: Reduc 98.3 1.5E-05 3.2E-10 64.4 12.1 156 26-185 25-185 (412)
235 KOG0252|consensus 98.3 1.2E-07 2.6E-12 76.5 -0.1 130 53-186 361-502 (538)
236 PF00854 PTR2: POT family; In 98.2 7.4E-06 1.6E-10 66.1 9.0 109 71-179 2-121 (372)
237 PF12832 MFS_1_like: MFS_1 lik 98.2 2.6E-06 5.7E-11 52.5 3.8 57 24-80 19-75 (77)
238 KOG2533|consensus 98.1 2.7E-06 5.8E-11 70.8 4.7 140 28-169 297-444 (495)
239 COG2270 Permeases of the major 98.1 0.00015 3.2E-09 58.5 13.2 147 40-186 58-225 (438)
240 KOG2816|consensus 98.0 0.00015 3.2E-09 60.1 11.2 123 30-155 267-391 (463)
241 PF06609 TRI12: Fungal trichot 97.9 0.00015 3.2E-09 61.7 10.9 111 41-151 350-462 (599)
242 PRK15462 dipeptide/tripeptide 97.9 0.00022 4.8E-09 59.6 10.8 138 42-179 310-476 (493)
243 KOG2615|consensus 97.8 7.3E-05 1.6E-09 59.5 6.8 123 32-156 289-414 (451)
244 PTZ00207 hypothetical protein; 97.7 0.00023 5E-09 60.7 8.7 132 45-179 396-550 (591)
245 TIGR00769 AAA ADP/ATP carrier 97.7 0.0014 3.1E-08 54.4 12.5 126 30-155 28-190 (472)
246 PF02487 CLN3: CLN3 protein; 97.6 0.0016 3.4E-08 52.9 11.7 134 42-183 61-197 (402)
247 KOG4332|consensus 97.5 0.00025 5.3E-09 54.2 5.7 145 30-177 62-216 (454)
248 KOG3098|consensus 97.4 0.0016 3.4E-08 53.8 9.3 102 46-150 56-158 (461)
249 PRK03612 spermidine synthase; 97.3 0.0053 1.2E-07 51.9 12.3 140 34-175 44-191 (521)
250 PF03092 BT1: BT1 family; Int 97.3 0.00055 1.2E-08 56.5 6.0 123 36-158 251-382 (433)
251 KOG1237|consensus 97.3 0.00075 1.6E-08 57.4 6.3 153 26-178 59-242 (571)
252 COG3104 PTR2 Dipeptide/tripept 97.1 0.0067 1.5E-07 50.2 10.3 141 41-181 325-487 (498)
253 KOG0637|consensus 97.0 0.00065 1.4E-08 55.4 3.6 123 31-153 58-202 (498)
254 KOG3762|consensus 96.9 0.00098 2.1E-08 55.5 3.7 80 11-90 17-97 (618)
255 KOG2563|consensus 96.8 0.0015 3.3E-08 53.2 3.9 150 34-183 295-452 (480)
256 KOG1330|consensus 96.4 0.0093 2E-07 49.0 6.1 123 38-160 281-417 (493)
257 PF02487 CLN3: CLN3 protein; 96.4 0.028 6.1E-07 45.8 8.4 112 38-153 279-394 (402)
258 KOG3098|consensus 96.0 0.16 3.5E-06 42.2 11.0 102 44-146 283-404 (461)
259 PF06963 FPN1: Ferroportin1 (F 95.6 0.21 4.6E-06 41.3 10.5 118 34-151 287-413 (432)
260 KOG3574|consensus 95.4 0.15 3.3E-06 41.3 8.6 120 29-150 54-189 (510)
261 PF03137 OATP: Organic Anion T 94.7 0.0084 1.8E-07 50.9 0.0 138 19-156 320-514 (539)
262 PF06963 FPN1: Ferroportin1 (F 94.2 0.36 7.9E-06 39.9 8.4 134 45-178 43-197 (432)
263 PF03219 TLC: TLC ATP/ADP tran 93.8 0.98 2.1E-05 38.1 10.3 118 38-155 56-205 (491)
264 KOG4332|consensus 93.7 1.9 4.2E-05 33.6 10.7 135 42-176 284-426 (454)
265 TIGR00806 rfc RFC reduced fola 93.1 0.33 7.2E-06 40.7 6.3 94 41-136 299-394 (511)
266 TIGR00805 oat sodium-independe 93.0 0.037 8E-07 48.1 0.7 62 25-86 351-415 (633)
267 KOG0637|consensus 92.6 0.4 8.7E-06 39.7 6.0 132 41-174 333-489 (498)
268 KOG2325|consensus 92.1 0.4 8.7E-06 40.2 5.6 77 103-179 396-473 (488)
269 TIGR00769 AAA ADP/ATP carrier 91.5 7.6 0.00017 32.7 12.7 70 103-172 274-345 (472)
270 KOG3810|consensus 91.4 1.6 3.6E-05 35.1 8.0 94 43-136 274-367 (433)
271 TIGR00939 2a57 Equilibrative N 90.9 1.5 3.4E-05 36.4 7.9 108 42-150 309-428 (437)
272 KOG3626|consensus 90.7 0.31 6.8E-06 42.8 3.7 136 21-156 409-649 (735)
273 COG3202 ATP/ADP translocase [E 89.8 9 0.00019 32.3 11.2 119 38-156 59-210 (509)
274 PF01770 Folate_carrier: Reduc 89.0 2.4 5.2E-05 34.9 7.4 92 41-134 286-379 (412)
275 KOG3880|consensus 88.4 1.3 2.8E-05 35.1 5.2 135 42-183 64-201 (409)
276 KOG1479|consensus 87.4 2.9 6.3E-05 34.3 6.8 107 42-149 284-398 (406)
277 PF13000 Acatn: Acetyl-coenzym 86.7 5.7 0.00012 33.7 8.3 50 104-153 127-177 (544)
278 KOG3880|consensus 86.6 3.9 8.5E-05 32.5 6.8 68 84-153 333-401 (409)
279 COG5336 Uncharacterized protei 86.3 2.1 4.5E-05 27.9 4.4 25 43-67 45-69 (116)
280 PF01733 Nucleoside_tran: Nucl 86.2 0.28 6.2E-06 38.6 0.6 107 44-150 186-304 (309)
281 PF13000 Acatn: Acetyl-coenzym 85.3 8.7 0.00019 32.6 8.6 58 99-156 409-467 (544)
282 TIGR00939 2a57 Equilibrative N 84.9 20 0.00043 30.0 10.7 48 95-146 106-153 (437)
283 KOG3097|consensus 83.0 1.2 2.5E-05 35.6 2.6 74 49-125 67-140 (390)
284 KOG3810|consensus 79.7 1.6 3.6E-05 35.1 2.5 100 54-156 56-156 (433)
285 PF02694 UPF0060: Uncharacteri 79.1 3.8 8.3E-05 26.7 3.6 51 39-89 53-103 (107)
286 COG4262 Predicted spermidine s 78.3 33 0.00072 28.0 9.2 87 36-122 39-132 (508)
287 PRK02237 hypothetical protein; 75.3 7.6 0.00016 25.4 4.1 50 40-89 56-105 (109)
288 PF07672 MFS_Mycoplasma: Mycop 75.1 36 0.00079 26.3 9.0 81 43-123 144-232 (267)
289 KOG3574|consensus 73.8 9.4 0.0002 31.5 5.2 59 101-159 375-434 (510)
290 PF03219 TLC: TLC ATP/ADP tran 72.9 59 0.0013 27.7 12.9 72 103-174 290-363 (491)
291 PF12805 FUSC-like: FUSC-like 72.6 27 0.00058 27.2 7.6 34 76-110 5-38 (284)
292 PF06912 DUF1275: Protein of u 71.6 38 0.00081 24.9 11.6 39 48-86 54-95 (209)
293 TIGR00880 2_A_01_02 Multidrug 64.5 20 0.00043 23.4 4.8 26 46-71 93-118 (141)
294 KOG1479|consensus 63.0 60 0.0013 26.9 7.8 35 95-130 117-151 (406)
295 COG4769 Predicted membrane pro 58.7 24 0.00052 25.1 4.3 51 49-107 82-132 (181)
296 TIGR01667 YCCS_YHJK integral m 57.9 88 0.0019 28.1 8.6 52 59-111 42-97 (701)
297 PF10183 ESSS: ESSS subunit of 53.7 16 0.00034 23.9 2.6 31 154-184 54-84 (105)
298 TIGR01666 YCCS hypothetical me 53.3 1.2E+02 0.0026 27.3 8.6 50 60-110 43-96 (704)
299 COG1268 BioY Uncharacterized c 52.8 71 0.0015 23.3 6.1 23 47-69 89-111 (184)
300 PF05631 DUF791: Protein of un 48.6 1.5E+02 0.0032 24.2 11.7 105 51-155 174-303 (354)
301 PRK10263 DNA translocase FtsK; 48.4 1.1E+02 0.0023 29.7 7.7 17 142-158 143-159 (1355)
302 PF09527 ATPase_gene1: Putativ 45.2 55 0.0012 18.2 4.8 35 48-82 8-43 (55)
303 TIGR00844 c_cpa1 na(+)/h(+) an 45.1 2.5E+02 0.0054 25.8 9.6 30 40-69 9-38 (810)
304 KOG3097|consensus 44.5 24 0.00052 28.5 2.7 99 12-110 279-382 (390)
305 PF15061 DUF4538: Domain of un 43.6 49 0.0011 19.0 3.2 25 157-181 3-27 (58)
306 PF12273 RCR: Chitin synthesis 42.2 15 0.00033 24.9 1.2 13 160-172 1-13 (130)
307 PF01733 Nucleoside_tran: Nucl 38.1 11 0.00023 29.8 0.0 25 103-128 5-29 (309)
308 TIGR00836 amt ammonium transpo 36.8 2.5E+02 0.0054 23.4 7.8 22 53-74 235-256 (403)
309 PF11947 DUF3464: Protein of u 36.8 1.1E+02 0.0023 21.6 4.7 47 94-143 96-143 (153)
310 PF03741 TerC: Integral membra 36.1 1E+02 0.0022 22.4 4.8 57 111-169 12-69 (183)
311 PF07672 MFS_Mycoplasma: Mycop 35.0 43 0.00094 25.9 2.8 54 127-180 2-61 (267)
312 COG2119 Predicted membrane pro 34.9 86 0.0019 22.9 4.1 37 49-85 143-179 (190)
313 PF10101 DUF2339: Predicted me 33.6 2.6E+02 0.0057 25.1 8.0 106 67-178 1-109 (745)
314 PF09605 Trep_Strep: Hypotheti 32.9 1.9E+02 0.0042 21.0 6.7 35 53-87 41-75 (186)
315 PF11511 RhodobacterPufX: Intr 32.7 1.1E+02 0.0024 18.1 3.6 32 158-189 29-60 (67)
316 TIGR00926 2A1704 Peptide:H+ sy 31.8 2.3E+02 0.0049 25.3 7.0 57 95-151 565-622 (654)
317 COG1742 Uncharacterized conser 31.4 36 0.00077 22.2 1.6 48 39-86 54-101 (109)
318 PF03606 DcuC: C4-dicarboxylat 31.0 3.3E+02 0.0071 23.1 10.3 16 59-74 103-118 (465)
319 PF13493 DUF4118: Domain of un 30.8 72 0.0016 20.3 3.1 23 48-70 83-105 (105)
320 PRK10692 hypothetical protein; 28.8 1.5E+02 0.0032 18.6 3.9 19 69-87 3-21 (92)
321 PF02632 BioY: BioY family; I 28.3 2.1E+02 0.0045 19.9 6.3 24 48-71 61-84 (148)
322 PF11299 DUF3100: Protein of u 27.6 35 0.00075 25.8 1.2 35 99-134 175-209 (241)
323 COG3086 RseC Positive regulato 27.2 2.2E+02 0.0048 19.9 6.1 42 34-75 66-107 (150)
324 PF12670 DUF3792: Protein of u 27.1 1.9E+02 0.0041 19.1 8.5 46 136-181 44-89 (116)
325 TIGR02230 ATPase_gene1 F0F1-AT 26.5 1.9E+02 0.0041 18.8 5.8 32 51-82 53-85 (100)
326 KOG1237|consensus 26.3 1.3E+02 0.0029 26.2 4.7 62 94-155 457-519 (571)
327 PF14851 FAM176: FAM176 family 26.2 1.5E+02 0.0034 20.8 4.1 32 93-124 16-47 (153)
328 KOG2601|consensus 25.6 4.1E+02 0.0088 22.4 7.4 123 50-172 73-217 (503)
329 TIGR03802 Asp_Ala_antiprt aspa 24.2 4.2E+02 0.0091 23.2 7.2 22 42-63 452-473 (562)
330 TIGR03173 pbuX xanthine permea 23.7 4.2E+02 0.0091 21.8 9.7 98 32-131 20-117 (406)
331 PF11298 DUF3099: Protein of u 22.6 1.8E+02 0.004 17.6 3.5 29 62-90 9-37 (73)
332 PF06645 SPC12: Microsomal sig 21.9 2E+02 0.0043 17.5 4.2 10 57-66 24-33 (76)
333 PF10762 DUF2583: Protein of u 21.9 1.9E+02 0.0041 18.1 3.4 19 69-87 3-21 (89)
334 TIGR02185 Trep_Strep conserved 21.0 3.4E+02 0.0073 19.8 6.9 33 53-85 43-75 (189)
335 PRK14214 camphor resistance pr 20.2 2.8E+02 0.006 18.5 7.2 14 77-90 39-52 (118)
336 PRK11588 hypothetical protein; 20.2 5.7E+02 0.012 22.1 10.4 47 60-108 136-184 (506)
No 1
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.94 E-value=1.1e-25 Score=183.05 Aligned_cols=171 Identities=19% Similarity=0.206 Sum_probs=155.3
Q ss_pred cccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccH
Q psy3615 16 ISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDY 95 (211)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (211)
+++.|+..+.+..|.+++++|++..+.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.++..++ +++
T Consensus 19 ~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~~~ 96 (412)
T TIGR02332 19 FSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA--TGP 96 (412)
T ss_pred HHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--cCH
Confidence 467888889899999999999999999999999999999999999999999999999999999999999999887 889
Q ss_pred HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc------ccCchHHHHHHHH
Q psy3615 96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID------TLGWEAAFYVTGA 168 (211)
Q Consensus 96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~------~~gw~~~~~~~~~ 168 (211)
+.+++.|++.|++.+...+....++.|++|+++|+++++ ......+|..+++.+++++.+ ..|||+.|++.++
T Consensus 97 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~ 176 (412)
T TIGR02332 97 ESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGF 176 (412)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHH
Confidence 999999999999999999999999999999999999999 778999999999999998864 3699999999888
Q ss_pred HHHHHHHHHHhhhcCCCCCC
Q psy3615 169 LGVVWWVVWMIVVYDTPDQH 188 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~ 188 (211)
..++..++.+++.||+|++.
T Consensus 177 ~~l~~~~~~~~~~~~~p~~~ 196 (412)
T TIGR02332 177 PSVILGVMTWFWLDDSPDKA 196 (412)
T ss_pred HHHHHHHHHhhccCCCcccC
Confidence 88777666666678877553
No 2
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.92 E-value=9.9e-25 Score=172.46 Aligned_cols=161 Identities=14% Similarity=0.174 Sum_probs=153.4
Q ss_pred cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615 20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA 99 (211)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (211)
.+.+...+.|++.+|+|+|..+.|+..+.|.++..++.++...+.||+.||++++....++.++.+++.++ +|++.++
T Consensus 28 tEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA--p~f~~Ll 105 (394)
T COG2814 28 TEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA--PSFAVLL 105 (394)
T ss_pred HHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh--ccHHHHH
Confidence 34445567788999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
+.|++.|++.|.+++....+..+..|+++|+++++ ...+..++..+|.+++.++.+.+|||.+|+..+.++++..+..+
T Consensus 106 ~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~ 185 (394)
T COG2814 106 LARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLW 185 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999988888
Q ss_pred hhhc
Q psy3615 179 IVVY 182 (211)
Q Consensus 179 ~~~~ 182 (211)
..+|
T Consensus 186 ~~lP 189 (394)
T COG2814 186 KLLP 189 (394)
T ss_pred HhCC
Confidence 8888
No 3
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.92 E-value=3.1e-24 Score=172.17 Aligned_cols=170 Identities=24% Similarity=0.411 Sum_probs=154.4
Q ss_pred cccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccH
Q psy3615 16 ISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDY 95 (211)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (211)
+++.++..++...|.+.+++|++..+.+++.+.+.++..++.++.|++.||+|||+++..+.++.+++..++.+. +++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~ 82 (399)
T TIGR00893 5 INYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA--GAY 82 (399)
T ss_pred HHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH--cCH
Confidence 467777888888888999999999999999999999999999999999999999999999999999999888887 789
Q ss_pred HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHH
Q psy3615 96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWW 174 (211)
Q Consensus 96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~ 174 (211)
+.+++.|++.|++.+...+....++.|++|+++|+++++ ......+|..+++.+.+.+.+..+||+.|++.+.+.++..
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG 162 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 8899999999999999999999999999999888877766
Q ss_pred HHHHhhhcCCCCC
Q psy3615 175 VVWMIVVYDTPDQ 187 (211)
Q Consensus 175 ~~~~~~~~~~~~~ 187 (211)
++..+..+|++++
T Consensus 163 ~~~~~~~~~~~~~ 175 (399)
T TIGR00893 163 VLWLKFIPDPPQK 175 (399)
T ss_pred HHhhheecCCCCc
Confidence 6666556665543
No 4
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.92 E-value=5.9e-24 Score=175.37 Aligned_cols=163 Identities=33% Similarity=0.590 Sum_probs=142.0
Q ss_pred cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcch
Q psy3615 34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAW 113 (211)
Q Consensus 34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 113 (211)
+++++..+.|++.+.+.+++.+++++.|++.||+|+|+++..+.++.+++.+++.+....+++.+++.|+++|++.+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 78999999999999999999999999999999999999999999999888877655433557889999999999999999
Q ss_pred HHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-cCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q psy3615 114 PSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-LGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRV 191 (211)
Q Consensus 114 ~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (211)
+....++.|++|+++|+++++ ...+..+|..+++++.+.+.+. .+||+.|++.+++.++..++.+...+|+|+++++.
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~ 229 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI 229 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC
Confidence 999999999999999999999 7799999999999999999988 49999999998888777776666666766554444
Q ss_pred ChHHH
Q psy3615 192 SAEEK 196 (211)
Q Consensus 192 ~~~~~ 196 (211)
+++|+
T Consensus 230 ~~~~~ 234 (465)
T TIGR00894 230 SKFEK 234 (465)
T ss_pred CHHHH
Confidence 44333
No 5
>KOG2532|consensus
Probab=99.91 E-value=9.3e-24 Score=172.53 Aligned_cols=175 Identities=35% Similarity=0.771 Sum_probs=162.3
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615 32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL 111 (211)
Q Consensus 32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 111 (211)
..++++|+.+.+++.+.++.|+.+++++.|++.||+|.|+++.++.++.++..++.+++...+++.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 56899999999999999999999999999999999999999999999999999999998766777889999999999999
Q ss_pred chHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-cCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q psy3615 112 AWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-LGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHP 189 (211)
Q Consensus 112 ~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (211)
.+|+...+.++|.|++||++..+ .+.+..+|.+++.+++|++.+. .||+..|++.+.++++..++++++..|+|.+++
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~ 224 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP 224 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 99999999999999999999999 8899999999999999999999 999999999999999999988888889998888
Q ss_pred CCChHHHHHHHHhhhcc
Q psy3615 190 RVSAEEKEYIQQALGNT 206 (211)
Q Consensus 190 ~~~~~~~~~~~~~~~~~ 206 (211)
...++|++..++...++
T Consensus 225 ~is~~El~~I~~~k~~~ 241 (466)
T KOG2532|consen 225 NISEKELKYIEKGKSEA 241 (466)
T ss_pred CCCHHHHHHHHhccccc
Confidence 88888887766654443
No 6
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.91 E-value=5.1e-24 Score=170.73 Aligned_cols=167 Identities=10% Similarity=0.014 Sum_probs=139.7
Q ss_pred ccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHH
Q psy3615 19 SSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAM 98 (211)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 98 (211)
.....+.+..|.+++|+|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+......+....... ++++.+
T Consensus 5 ~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l 82 (368)
T TIGR00903 5 AIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP--FNYEWL 82 (368)
T ss_pred HHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh--ccHHHH
Confidence 344556777888999999999999999999999999999999999999999987765554444443322222 579999
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615 99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW 177 (211)
Q Consensus 99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~ 177 (211)
++.|++.|++.+. .......++|++|+++|+++++ ...+..+|..++++++.++.++.|||+.|++.+++.++..++.
T Consensus 83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~ 161 (368)
T TIGR00903 83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILV 161 (368)
T ss_pred HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 4566666799999999999999 8899999999999999999999999999999888888877777
Q ss_pred HhhhcCCCCCC
Q psy3615 178 MIVVYDTPDQH 188 (211)
Q Consensus 178 ~~~~~~~~~~~ 188 (211)
++..||+|+.+
T Consensus 162 ~~~lp~~p~~~ 172 (368)
T TIGR00903 162 LAALPALPFQA 172 (368)
T ss_pred HHHcCCCCCCC
Confidence 77788876543
No 7
>KOG1330|consensus
Probab=99.91 E-value=2.4e-25 Score=176.23 Aligned_cols=171 Identities=20% Similarity=0.201 Sum_probs=162.0
Q ss_pred CccccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc
Q psy3615 14 SPISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW 93 (211)
Q Consensus 14 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~ 93 (211)
+-+|+.|+..+.-..+.+++.+|++++..|++.+.+.+.+.+++++.|+++||++||+++.+|..++.++.++.++. +
T Consensus 42 nlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs--~ 119 (493)
T KOG1330|consen 42 NLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS--N 119 (493)
T ss_pred HHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH--H
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999988 8
Q ss_pred cHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHH
Q psy3615 94 DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGV 171 (211)
Q Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~ 171 (211)
.+|++.++|.+.|+|.+...+..+++++|.+|.++|++.++ +|....+|..+|.+++..+.+..+ |||.|+..+++++
T Consensus 120 ~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~v 199 (493)
T KOG1330|consen 120 HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGV 199 (493)
T ss_pred HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHH
Confidence 89999999999999999999999999999999999999999 999999999999999999988876 9999999999999
Q ss_pred HHHHHHHhhhcCCCC
Q psy3615 172 VWWVVWMIVVYDTPD 186 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~ 186 (211)
++.++.+++.+|+++
T Consensus 200 i~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 200 IVGLLVFLFVREPER 214 (493)
T ss_pred HHHHHHHhhccCccc
Confidence 999888888877665
No 8
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.91 E-value=7e-24 Score=166.49 Aligned_cols=169 Identities=16% Similarity=0.246 Sum_probs=159.7
Q ss_pred cccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHH
Q psy3615 18 LSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKA 97 (211)
Q Consensus 18 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~ 97 (211)
|..|..+....|.+.++.++|.+|.|.+.+.+.+.+.++..+.|.++||.++|+.+..++++.++..+++++. ++.+.
T Consensus 42 Yl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs--~s~~~ 119 (448)
T COG2271 42 YLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS--PSLFL 119 (448)
T ss_pred HHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh--hHHHH
Confidence 4566778888999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhh--hhhhcccCchHHHHHHHHHHHHHH
Q psy3615 98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLC--GVVIDTLGWEAAFYVTGALGVVWW 174 (211)
Q Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~--~~l~~~~gw~~~~~~~~~~~~~~~ 174 (211)
+.+..+++|..+|..+|+....+..|+++++||+..+ +++..++|+.+.|++. +++..+.+||..|++.++++++..
T Consensus 120 ~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiiva 199 (448)
T COG2271 120 FAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVA 199 (448)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 9999999999999999 899888899999999999999999
Q ss_pred HHHHhhhcCCCCCC
Q psy3615 175 VVWMIVVYDTPDQH 188 (211)
Q Consensus 175 ~~~~~~~~~~~~~~ 188 (211)
++.++..+|+|+..
T Consensus 200 l~~~~~~rd~Pqs~ 213 (448)
T COG2271 200 LILLFLLRDRPQSE 213 (448)
T ss_pred HHHHHHhCCCcccc
Confidence 98888888888753
No 9
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.91 E-value=8.9e-24 Score=175.61 Aligned_cols=169 Identities=13% Similarity=0.079 Sum_probs=152.4
Q ss_pred cccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccH
Q psy3615 16 ISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDY 95 (211)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (211)
....|.+++....|.+.+++|.+.++.+|+.+.+.++..++.++.|+++||+|||+++.++..+++++.++++++ +|+
T Consensus 17 ~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a--~~~ 94 (495)
T PRK14995 17 PVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS--PTA 94 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc--CCH
Confidence 345678888888999999999999999999999999999999999999999999999999999999999999888 899
Q ss_pred HHHHHHHHHHHhhhhcchHHHHHHhhhcc-CCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHH
Q psy3615 96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWI-PPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVW 173 (211)
Q Consensus 96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~ 173 (211)
+.+++.|+++|++.+...+.....+.+.+ |+++|+++++ ......+|..+||.+++++.++.+||+.|++...+.++.
T Consensus 95 ~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~ 174 (495)
T PRK14995 95 SWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVV 174 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Confidence 99999999999999998888888887776 6789999999 789999999999999999999999999999988887777
Q ss_pred HHHHHhhhcCCCC
Q psy3615 174 WVVWMIVVYDTPD 186 (211)
Q Consensus 174 ~~~~~~~~~~~~~ 186 (211)
.++..+..|++++
T Consensus 175 ~~l~~~~l~~~~~ 187 (495)
T PRK14995 175 MGLTARYVPRQAG 187 (495)
T ss_pred HHHHHHhCCCCCC
Confidence 6666666776543
No 10
>PRK03545 putative arabinose transporter; Provisional
Probab=99.90 E-value=2.9e-23 Score=167.68 Aligned_cols=159 Identities=17% Similarity=0.289 Sum_probs=144.1
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIV 104 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l 104 (211)
.+..|.+.+++|+|+.+.+++.+.+.+++.+++++.|++.||+|||+++..+..+.+++.+.+.+. ++++.+++.|++
T Consensus 29 ~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~~ 106 (390)
T PRK03545 29 VGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA--WNFTVLLISRIG 106 (390)
T ss_pred HcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHH
Confidence 344577899999999999999999999999999999999999999999999999999999998888 899999999999
Q ss_pred HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615 105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYD 183 (211)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~ 183 (211)
.|++.+..++...+++.|++|+++|+++++ .....++|..++|++++.+.++.|||+.|++.+++.++..++.+...||
T Consensus 107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 186 (390)
T PRK03545 107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPL 186 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999888999999999999999999999 7799999999999999999998999999999988877766655555565
Q ss_pred CC
Q psy3615 184 TP 185 (211)
Q Consensus 184 ~~ 185 (211)
++
T Consensus 187 ~~ 188 (390)
T PRK03545 187 LP 188 (390)
T ss_pred CC
Confidence 43
No 11
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.90 E-value=4.1e-23 Score=169.06 Aligned_cols=167 Identities=17% Similarity=0.258 Sum_probs=148.0
Q ss_pred cccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHH
Q psy3615 18 LSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKA 97 (211)
Q Consensus 18 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~ 97 (211)
+.++..+....|.+.+++|+|+.+.+++.+.+.+++.+++++.|++.||+|||+++.++.++.+++.+++.+. ++++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~ 113 (434)
T PRK11663 36 YFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS--SSLWA 113 (434)
T ss_pred HHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH--hHHHH
Confidence 3445556677788899999999999999999999999999999999999999999999999999999988877 88999
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615 98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV 176 (211)
Q Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~ 176 (211)
+++.|++.|++.|..++....++.+++|+++|+++++ .+....+|..+++.+.+++.+..|||+.|++.+++.++..++
T Consensus 114 l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~ 193 (434)
T PRK11663 114 FALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLF 193 (434)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999989999999999999999999999 779999999999999999999999999999988877665555
Q ss_pred HHhhhcCCCC
Q psy3615 177 WMIVVYDTPD 186 (211)
Q Consensus 177 ~~~~~~~~~~ 186 (211)
..+..+|+|+
T Consensus 194 ~~~~~~~~p~ 203 (434)
T PRK11663 194 LCWRLRDKPQ 203 (434)
T ss_pred HHHHcCCCHh
Confidence 5555566543
No 12
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.89 E-value=5.5e-23 Score=167.28 Aligned_cols=165 Identities=12% Similarity=0.060 Sum_probs=145.7
Q ss_pred cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615 20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA 99 (211)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (211)
+.....+..|.+.+++|.+..+.++..+++.+++.+++++.|+++||+|||++++.+.++++++.+++.++ ++++.++
T Consensus 31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--~~~~~l~ 108 (413)
T PRK15403 31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT--TSMTQFL 108 (413)
T ss_pred HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc--CCHHHHH
Confidence 44555666677889999999999999999999999999999999999999999999999999999988887 8899999
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
+.|+++|++.+...+....++.|++|+++|++.++ ......+|..++|.+++.+.++.|||+.|++.+++.++..+..+
T Consensus 109 ~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 109 IARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988767777888999999999999999 88889999999999999999888999999999888777666555
Q ss_pred hhhcCCCC
Q psy3615 179 IVVYDTPD 186 (211)
Q Consensus 179 ~~~~~~~~ 186 (211)
+..||+++
T Consensus 189 ~~lp~~~~ 196 (413)
T PRK15403 189 LAMPETVK 196 (413)
T ss_pred HhCCCCcc
Confidence 55676543
No 13
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.89 E-value=1.4e-22 Score=163.93 Aligned_cols=157 Identities=13% Similarity=0.157 Sum_probs=140.9
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQG 106 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G 106 (211)
..|.+.+++|+++++.++..+.+.++..+++++.|++.||+|||+++..+.++.+++.+++.+. ++++.+++.|++.|
T Consensus 42 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G 119 (394)
T PRK10213 42 LLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA--NSFSLLLIGRACLG 119 (394)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH--ChHHHHHHHHHHHH
Confidence 4456789999999999999999999999999999999999999999999999999998888777 88999999999999
Q ss_pred hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615 107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTP 185 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (211)
++.+...+...+++.|++|+++|+++++ .....++|..++|++++.+.+..|||+.|++.+.+.++..+......||.+
T Consensus 120 ~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 120 LALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 9999999999999999999999999999 889999999999999999999999999999988776655444444455543
No 14
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.89 E-value=1.2e-22 Score=163.66 Aligned_cols=162 Identities=10% Similarity=0.046 Sum_probs=145.4
Q ss_pred cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q psy3615 22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGL 101 (211)
Q Consensus 22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (211)
....+..|.+++++|++..+.+++.+.+.++..+++++.|++.||+|||+++..+..+.+++.+++.++ ++++.+++.
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~--~~~~~l~~~ 97 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS--SSYLMLAIG 97 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHH
Confidence 345556677899999999999999999999999999999999999999999999999999999998888 899999999
Q ss_pred HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615 102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIV 180 (211)
Q Consensus 102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~ 180 (211)
|++.|++.+...+....++.|++|+++|+++++ ...+..+|..++|++++++.+..+||+.|++.+.+.++..+..++.
T Consensus 98 r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~ 177 (382)
T PRK10091 98 RLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFW 177 (382)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888888899999999999999999 7788999999999999999998999999999988877766655555
Q ss_pred hcCCC
Q psy3615 181 VYDTP 185 (211)
Q Consensus 181 ~~~~~ 185 (211)
.||.+
T Consensus 178 lp~~~ 182 (382)
T PRK10091 178 VPDIR 182 (382)
T ss_pred CCCCC
Confidence 66654
No 15
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.89 E-value=6.8e-23 Score=169.24 Aligned_cols=171 Identities=13% Similarity=0.088 Sum_probs=146.7
Q ss_pred cccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh---hc
Q psy3615 16 ISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA---AY 92 (211)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~---~~ 92 (211)
.++.++..++...|.+.+++|++..+.|++.+.+.+++.+++++.|+++||+|+|+++..+.++.++..+..++. ..
T Consensus 40 ~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~ 119 (467)
T PRK09556 40 TMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGS 119 (467)
T ss_pred HHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhccc
Confidence 356788888888999999999999999999999999999999999999999999999998888887776665542 12
Q ss_pred ccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc---CchHHHHHHHH
Q psy3615 93 WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL---GWEAAFYVTGA 168 (211)
Q Consensus 93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~---gw~~~~~~~~~ 168 (211)
++++.+++.|++.|++.+...+...+++++++|+++|+++++ .....++|.++++.+..++.+.. +|+..|.+.++
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~ 199 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSI 199 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 689999999999999999999999999999999999999999 77999999999999887776643 59998888888
Q ss_pred HHHHHHHHHHhhhcCCCC
Q psy3615 169 LGVVWWVVWMIVVYDTPD 186 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~ 186 (211)
+.++..++.+++.+++|+
T Consensus 200 ~~~~~~i~~~~~~~~~p~ 217 (467)
T PRK09556 200 IALIIGFIGLRYGSDSPE 217 (467)
T ss_pred HHHHHHHHHHHhCCCChh
Confidence 877766666665565543
No 16
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.89 E-value=3.6e-23 Score=165.44 Aligned_cols=168 Identities=15% Similarity=0.245 Sum_probs=150.1
Q ss_pred cccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccH
Q psy3615 16 ISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDY 95 (211)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (211)
.++.++..+....|.+.+++|+|..+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++..+. +++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~ 83 (379)
T TIGR00881 6 AYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--TSL 83 (379)
T ss_pred HHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh--hhH
Confidence 456677888888889999999999999999999999999999999999999999999999999999999988888 789
Q ss_pred HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhh-hhhhhhhcccCchHHHHHHHHHHHHH
Q psy3615 96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSY-PLCGVVIDTLGWEAAFYVTGALGVVW 173 (211)
Q Consensus 96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~-~~~~~l~~~~gw~~~~~~~~~~~~~~ 173 (211)
+.+++.|++.|++.+...+...+++.|++|+++|+++++ ......+|..+++ .+...+.+..+||+.|++.+.+.++.
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (379)
T TIGR00881 84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIV 163 (379)
T ss_pred HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 8899999999999 46677777789999999888877776
Q ss_pred HHHHHhhhcCCC
Q psy3615 174 WVVWMIVVYDTP 185 (211)
Q Consensus 174 ~~~~~~~~~~~~ 185 (211)
.++.++..+|++
T Consensus 164 ~~~~~~~~~~~~ 175 (379)
T TIGR00881 164 SLICFLLLRDSP 175 (379)
T ss_pred HHHHheeeCCCc
Confidence 666665566544
No 17
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.89 E-value=3.7e-22 Score=160.38 Aligned_cols=164 Identities=16% Similarity=0.164 Sum_probs=146.2
Q ss_pred ccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHH
Q psy3615 21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAG 100 (211)
Q Consensus 21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 100 (211)
.....+..|.+.+++|.|+.+.+++.+.+.++..+++++.|++.||+|||+++..+.++.+++.+.+... ++++.+++
T Consensus 21 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 98 (385)
T TIGR00710 21 IDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS--NNIETLLV 98 (385)
T ss_pred HHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHH
Confidence 3444556677889999999999999999999999999999999999999999999999999998888777 88999999
Q ss_pred HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615 101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
.|++.|++.+...+...+++.|++|+++|+++++ .+....+|..+++.+++.+.+..+||+.+++.+...++..++.++
T Consensus 99 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 99 LRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 889999999999999999999899999999988877776666555
Q ss_pred hhcCCCC
Q psy3615 180 VVYDTPD 186 (211)
Q Consensus 180 ~~~~~~~ 186 (211)
..||+++
T Consensus 179 ~~~~~~~ 185 (385)
T TIGR00710 179 ILPETLP 185 (385)
T ss_pred hCCCCCC
Confidence 5666543
No 18
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.88 E-value=7.8e-23 Score=162.15 Aligned_cols=162 Identities=22% Similarity=0.322 Sum_probs=140.3
Q ss_pred ccccccccC-CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615 21 RGVLFQQDG-DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA 99 (211)
Q Consensus 21 ~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (211)
.....+..+ .+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..++ ++.+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~ 89 (352)
T PF07690_consen 12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--SNFWLLL 89 (352)
T ss_dssp HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--CCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--hhHHHHh
Confidence 334444555 6789999999999999999999999999999999999999999999999999996666555 6777999
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
+.|++.|++.+...+....++.|++|+++|+++++ ......+|..++|.+++.+.+..+||+.|++.+.+.++..++..
T Consensus 90 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~ 169 (352)
T PF07690_consen 90 IARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFI 169 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHh
Confidence 99999999999999999999999999999999999 88999999999999999999889999999999999888776543
Q ss_pred hhhcCC
Q psy3615 179 IVVYDT 184 (211)
Q Consensus 179 ~~~~~~ 184 (211)
.+.+++
T Consensus 170 ~~~~~~ 175 (352)
T PF07690_consen 170 LFLPEP 175 (352)
T ss_dssp CCC---
T ss_pred hhhhhc
Confidence 444433
No 19
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.88 E-value=3.6e-22 Score=159.50 Aligned_cols=163 Identities=18% Similarity=0.104 Sum_probs=142.6
Q ss_pred cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615 20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA 99 (211)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (211)
.+...++..|.+.+++|+|..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.+. ++++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 95 (377)
T TIGR00890 18 YVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA--DSLAALY 95 (377)
T ss_pred HHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH--HHHHHHH
Confidence 34455677888999999999999999999999999999999999999999999999999999999988888 8899999
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
+.|++.|++.+..++.....+.+++| ++|+++.+ ......+|..+++++.+.+.+..+||+.|++.+++.++..+..+
T Consensus 96 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 96 LTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888999997 57999999 77888999888777777777888999999999888877766665
Q ss_pred hhhcCCC
Q psy3615 179 IVVYDTP 185 (211)
Q Consensus 179 ~~~~~~~ 185 (211)
+..++++
T Consensus 175 ~~~~~~~ 181 (377)
T TIGR00890 175 FLIGYPP 181 (377)
T ss_pred HheecCc
Confidence 5555443
No 20
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.88 E-value=2.1e-22 Score=163.30 Aligned_cols=167 Identities=22% Similarity=0.251 Sum_probs=147.1
Q ss_pred cccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHH
Q psy3615 18 LSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKA 97 (211)
Q Consensus 18 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~ 97 (211)
..+........|.+.+++|+++.+.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+++.+. ++++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~ 105 (406)
T PRK11551 28 GLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA--WDFPS 105 (406)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHH
Confidence 3445556667778899999999999999999999999999999999999999999999999998888888777 88999
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615 98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV 176 (211)
Q Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~ 176 (211)
+++.|++.|++.+...+...+++.|++|+++|+++++ .+....+|..+++.+++.+.+..+|++.|++.+++.++..++
T Consensus 106 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK11551 106 LLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 889999999999999988888889999999887776666555
Q ss_pred HHhhhcCCCC
Q psy3615 177 WMIVVYDTPD 186 (211)
Q Consensus 177 ~~~~~~~~~~ 186 (211)
.....||+++
T Consensus 186 ~~~~l~~~~~ 195 (406)
T PRK11551 186 LMRWLPESRA 195 (406)
T ss_pred HHHhCCCChh
Confidence 5555677654
No 21
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.88 E-value=2.1e-22 Score=166.70 Aligned_cols=166 Identities=20% Similarity=0.239 Sum_probs=150.4
Q ss_pred ccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHH
Q psy3615 17 SLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYK 96 (211)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (211)
...+..+..+..|.+.+++|.+..+.+++.+.+.++..++.++.|++.||+|||+++.++.++.+++.+++... ++++
T Consensus 14 ~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~ 91 (485)
T TIGR00711 14 AVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA--PNLE 91 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc--CCHH
Confidence 34566667777888999999999999999999999999999999999999999999999999999999998877 8899
Q ss_pred HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHH
Q psy3615 97 AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWV 175 (211)
Q Consensus 97 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~ 175 (211)
.+++.|++.|++.+...+...+++.|++|+++|+++++ ......+|..++|.+++++.++.+||+.|++.+.+.++..+
T Consensus 92 ~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~ 171 (485)
T TIGR00711 92 LMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVV 171 (485)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999 77999999999999999999999999999998888777666
Q ss_pred HHHhhhcCC
Q psy3615 176 VWMIVVYDT 184 (211)
Q Consensus 176 ~~~~~~~~~ 184 (211)
+..+..|++
T Consensus 172 ~~~~~~~~~ 180 (485)
T TIGR00711 172 VAFFILPRD 180 (485)
T ss_pred HHHHHcCCc
Confidence 655556554
No 22
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.87 E-value=6.4e-22 Score=160.09 Aligned_cols=150 Identities=10% Similarity=-0.021 Sum_probs=134.8
Q ss_pred cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q psy3615 22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGL 101 (211)
Q Consensus 22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (211)
..+.+..|.+++++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+..+++++.+.++++ ++++.+++.
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a--~~~~~ll~~ 103 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY--PQSALLLSS 103 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC--cchHHHHHH
Confidence 445677788999999999999999999999999999999999999999999999999999999999888 899999999
Q ss_pred HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc-CchHHHHHHHHHHHHHH
Q psy3615 102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL-GWEAAFYVTGALGVVWW 174 (211)
Q Consensus 102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~-gw~~~~~~~~~~~~~~~ 174 (211)
|++.|++.+...+....++.+++| ++|+++++ ...+..+|..+++.+++++.++. +||+.+...+...++..
T Consensus 104 r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 104 ALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL 177 (393)
T ss_pred HHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 78999999 77888899999999999888875 89998877665544433
No 23
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.87 E-value=1.1e-21 Score=157.43 Aligned_cols=162 Identities=17% Similarity=0.188 Sum_probs=145.1
Q ss_pred cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q psy3615 22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGL 101 (211)
Q Consensus 22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (211)
....+..|.+.+++|+|+.+.+++.+.+.++..+++++.|++.||+|||+++..+.++.+++...+.+. ++++.+++.
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~ 85 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA--QTIDQLIYM 85 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHH
Confidence 344566677788999999999999999999999999999999999999999999999999999888777 889999999
Q ss_pred HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615 102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIV 180 (211)
Q Consensus 102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~ 180 (211)
|++.|++.+...+...+++.|++|+++|+++++ .+....+|..++|.+++.+.+..+||+.|++.+.+.++..++..+.
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 7788999999999999999998999999999888877766665555
Q ss_pred hcCCC
Q psy3615 181 VYDTP 185 (211)
Q Consensus 181 ~~~~~ 185 (211)
.||++
T Consensus 166 ~~~~~ 170 (377)
T PRK11102 166 IPETL 170 (377)
T ss_pred CCccC
Confidence 66653
No 24
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.87 E-value=4.9e-22 Score=160.49 Aligned_cols=165 Identities=15% Similarity=0.107 Sum_probs=143.3
Q ss_pred cccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHH
Q psy3615 18 LSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKA 97 (211)
Q Consensus 18 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~ 97 (211)
..+.....+..+.+++++|+++.+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+++.+. ++++.
T Consensus 25 ~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~ 102 (405)
T TIGR00891 25 AFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA--PGYIT 102 (405)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--ccHHH
Confidence 4455666777788899999999999999999999999999999999999999999999999999998888777 88999
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC--chHHHHHHHHHHHHHH
Q psy3615 98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG--WEAAFYVTGALGVVWW 174 (211)
Q Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g--w~~~~~~~~~~~~~~~ 174 (211)
+++.|++.|++.+..++...+++.|++|+++|+++++ ......+|..+++.+.+.+.+..+ ||+.|++.+...++..
T Consensus 103 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 103 MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 779999999999999999888766 9999987655544433
Q ss_pred HHHHhhhcCCC
Q psy3615 175 VVWMIVVYDTP 185 (211)
Q Consensus 175 ~~~~~~~~~~~ 185 (211)
+.....||++
T Consensus 183 -~~~~~~~~~~ 192 (405)
T TIGR00891 183 -WLRKNIPEAE 192 (405)
T ss_pred -HHHHhCCCCh
Confidence 3333455543
No 25
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.87 E-value=2.3e-21 Score=156.59 Aligned_cols=159 Identities=13% Similarity=0.149 Sum_probs=142.1
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIV 104 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l 104 (211)
.+..|.+.+++|.|+.+.++..+.+.++..+++++.|+++||+|||+.+..+.++.+++...+... ++++.+++.|++
T Consensus 23 ~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l 100 (392)
T PRK10473 23 LVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA--ETSSLFLAGRFL 100 (392)
T ss_pred hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHH
Confidence 345677889999999999999999999999999999999999999999999999999998888777 788889999999
Q ss_pred HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615 105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYD 183 (211)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~ 183 (211)
.|++.+..++....++.|++|+++|+++++ .+....+|..++|.+++.+.+..+|++.|++.+.+.++..++..+..||
T Consensus 101 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (392)
T PRK10473 101 QGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKE 180 (392)
T ss_pred HHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999889999999999999999999999 7788889999999999988888899999999888877776666555666
Q ss_pred CC
Q psy3615 184 TP 185 (211)
Q Consensus 184 ~~ 185 (211)
++
T Consensus 181 ~~ 182 (392)
T PRK10473 181 TR 182 (392)
T ss_pred CC
Confidence 54
No 26
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.87 E-value=1e-21 Score=162.48 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=128.0
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh----------cccHHHHHHHH
Q psy3615 33 SLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA----------YWDYKAMAGLR 102 (211)
Q Consensus 33 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~ 102 (211)
.+++++..+.+++.+++.++.+++++++|+++||+|||++++++.++++++.+...+.. .+.++.+++.|
T Consensus 48 ~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R 127 (479)
T PRK10077 48 LSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYR 127 (479)
T ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHH
Confidence 34488999999999999999999999999999999999999999999988877665420 12256778999
Q ss_pred HHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh--------cccCchHHHHHHHHHHHHH
Q psy3615 103 IVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI--------DTLGWEAAFYVTGALGVVW 173 (211)
Q Consensus 103 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~--------~~~gw~~~~~~~~~~~~~~ 173 (211)
++.|++.|...+...++++|++|+++|+++++ ......+|..+++.++..+. +..|||+.|++.++..++.
T Consensus 128 ~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~ 207 (479)
T PRK10077 128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLF 207 (479)
T ss_pred HHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 77888999888877765443 4568999999887777665
Q ss_pred HHHHHhhhcCCCC
Q psy3615 174 WVVWMIVVYDTPD 186 (211)
Q Consensus 174 ~~~~~~~~~~~~~ 186 (211)
.+. .++.||+|+
T Consensus 208 ~~~-~~~l~~s~~ 219 (479)
T PRK10077 208 LML-LYFVPETPR 219 (479)
T ss_pred HHH-HHcCCCCcH
Confidence 544 455788764
No 27
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.87 E-value=4.5e-21 Score=155.65 Aligned_cols=168 Identities=13% Similarity=0.054 Sum_probs=145.9
Q ss_pred ccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHH
Q psy3615 17 SLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYK 96 (211)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (211)
+..+...+.+..+.+.+++|+|+.+.++..+.+.+++.+++++.|+++||+|||+++..+..+.+++.+...+. ++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~ 102 (406)
T PRK15402 25 TYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA--QSIE 102 (406)
T ss_pred HHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--ccHH
Confidence 34455556666677889999999999999999999999999999999999999999999999999988888777 7899
Q ss_pred HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHH
Q psy3615 97 AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWV 175 (211)
Q Consensus 97 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~ 175 (211)
.+++.|++.|++.+...+...+.+.|.+|+++|.+.++ ......++..++|.+++.+.++.+||+.|++.+++.++..+
T Consensus 103 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~ 182 (406)
T PRK15402 103 QFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFF 182 (406)
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence 99999999999999888889999999999999999999 66777889999999999999989999999998888777666
Q ss_pred HHHhhhcCCCC
Q psy3615 176 VWMIVVYDTPD 186 (211)
Q Consensus 176 ~~~~~~~~~~~ 186 (211)
..++..||+++
T Consensus 183 ~~~~~~~~~~~ 193 (406)
T PRK15402 183 GLWRAMPETAG 193 (406)
T ss_pred HHHHhCCCCCc
Confidence 55555666543
No 28
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.87 E-value=9.4e-22 Score=168.43 Aligned_cols=165 Identities=13% Similarity=0.046 Sum_probs=142.4
Q ss_pred cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615 20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA 99 (211)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (211)
+...+....|.+.++++++..+.+++.+++.++.+++++++|+++||+|||++++++.++.+++.++..++ ++++.++
T Consensus 182 d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa--~s~~~ll 259 (742)
T TIGR01299 182 EVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV--QGYGFFL 259 (742)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--hhHHHHH
Confidence 34456667778889999999999999999999999999999999999999999999999999998888877 8899999
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-------------cCchHHHHH
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-------------LGWEAAFYV 165 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-------------~gw~~~~~~ 165 (211)
+.|++.|++.+...+...+++.|++|+++|++.++ ...++.+|.++++.++..+... .+||+.+++
T Consensus 260 v~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i 339 (742)
T TIGR01299 260 FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIV 339 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHH
Confidence 99999999999999999999999999999999999 7799999999999887666543 358888887
Q ss_pred HHHHHHHHHHHHHhhhcCCCCC
Q psy3615 166 TGALGVVWWVVWMIVVYDTPDQ 187 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~ 187 (211)
.++..++. ++..+++||+|+.
T Consensus 340 ~~lp~ll~-ll~~~~lPESPrw 360 (742)
T TIGR01299 340 CAFPCVFA-IGALTFMPESPRF 360 (742)
T ss_pred HHHHHHHH-HHHHHHcCCCHHH
Confidence 76655544 4445668998864
No 29
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.86 E-value=1.9e-21 Score=154.80 Aligned_cols=156 Identities=14% Similarity=0.013 Sum_probs=136.8
Q ss_pred ccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc-----cH
Q psy3615 21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW-----DY 95 (211)
Q Consensus 21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~-----~~ 95 (211)
.....+..|.+..+++.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..+. + ++
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 92 (365)
T TIGR00900 15 TAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV--ALLGGLNI 92 (365)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH--HHcCCCcH
Confidence 3344445555677889999999999999999999999999999999999999999999888887777666 4 88
Q ss_pred HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHH
Q psy3615 96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWW 174 (211)
Q Consensus 96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~ 174 (211)
+.+++.|++.|++.+...+...+++.|++|+++|+++++ ......+|..++|.+++.+.+..+||+.|++.+...++..
T Consensus 93 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 172 (365)
T TIGR00900 93 WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISA 172 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 8899999999999999999999999999998777665554
Q ss_pred HHHH
Q psy3615 175 VVWM 178 (211)
Q Consensus 175 ~~~~ 178 (211)
++.+
T Consensus 173 ~~~~ 176 (365)
T TIGR00900 173 LLIV 176 (365)
T ss_pred HHHH
Confidence 4433
No 30
>TIGR00895 2A0115 benzoate transport.
Probab=99.86 E-value=3.4e-21 Score=155.06 Aligned_cols=164 Identities=20% Similarity=0.237 Sum_probs=145.0
Q ss_pred ccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHH
Q psy3615 21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAG 100 (211)
Q Consensus 21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 100 (211)
.....+..|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+.+++.++..+. ++++.+++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 110 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA--TNVTQLLI 110 (398)
T ss_pred HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc--cchHHHHH
Confidence 3445566777889999999999999999999999999999999999999999999999999988888777 78999999
Q ss_pred HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615 101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
.+++.|++.+...+...+++.|++|+++|+++++ ......+|..+++.+.+++.+..+|++.+++.+.+..+..++...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (398)
T TIGR00895 111 LRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMR 190 (398)
T ss_pred HHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 779999999999999999999999999999887666666665555
Q ss_pred hhcCCCC
Q psy3615 180 VVYDTPD 186 (211)
Q Consensus 180 ~~~~~~~ 186 (211)
..||+++
T Consensus 191 ~~~~~~~ 197 (398)
T TIGR00895 191 FLPESID 197 (398)
T ss_pred hCCCCCh
Confidence 5666543
No 31
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.86 E-value=8.7e-21 Score=153.37 Aligned_cols=164 Identities=15% Similarity=0.121 Sum_probs=142.4
Q ss_pred ccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHH
Q psy3615 21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAG 100 (211)
Q Consensus 21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 100 (211)
.....+..|.+.+++|+|+.+.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.+.+... ++++.+++
T Consensus 24 ~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ 101 (394)
T PRK11652 24 QTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA--HSLTVLIA 101 (394)
T ss_pred HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHH
Confidence 3444555677889999999999999999999999999999999999999999999999999988888776 88999999
Q ss_pred HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615 101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
.|++.|++.+...+....+..|.+++++++++++ ...+..++..++|.+++.+.+..|||+.|++.+...++..++..+
T Consensus 102 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 181 (394)
T PRK11652 102 ASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMAR 181 (394)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888889999999999999999 778889999999999999999899999999988777665555445
Q ss_pred hhcCCCC
Q psy3615 180 VVYDTPD 186 (211)
Q Consensus 180 ~~~~~~~ 186 (211)
..||+++
T Consensus 182 ~~~~~~~ 188 (394)
T PRK11652 182 WMPETRP 188 (394)
T ss_pred hCCccCc
Confidence 5666543
No 32
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.85 E-value=2.1e-21 Score=158.40 Aligned_cols=149 Identities=15% Similarity=0.015 Sum_probs=136.5
Q ss_pred cccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHH
Q psy3615 18 LSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKA 97 (211)
Q Consensus 18 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~ 97 (211)
..+.....+..+.+++++|+|+.+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+...+. ++++.
T Consensus 31 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~ 108 (426)
T PRK12307 31 GFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA--SGVIM 108 (426)
T ss_pred HhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--hHHHH
Confidence 3455556677788899999999999999999999999999999999999999999999999999999988887 88999
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHH
Q psy3615 98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGA 168 (211)
Q Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~ 168 (211)
+++.|++.|++.+..++....++.|++|+++|+++++ ...+..+|..+++.+.+.+.+..+||+.|++...
T Consensus 109 l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 109 LTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 7799999999999999999888999999987543
No 33
>TIGR00898 2A0119 cation transport protein.
Probab=99.85 E-value=1e-20 Score=157.60 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=138.4
Q ss_pred cccCCCcccccCC---chhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHH
Q psy3615 26 QQDGDSGSLFHWD---SNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLR 102 (211)
Q Consensus 26 ~~~~~i~~~~~~s---~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 102 (211)
+..+.+.+|+|++ +.+.++..+++.++..+++++.|+++||+|||+++.++.++.+++.++..++ ++++.+++.|
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r 187 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS--PNYTVFLVFR 187 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc--ccHHHHHHHH
Confidence 4556789999999 8899999999999999999999999999999999999999999999888887 8999999999
Q ss_pred HHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhh
Q psy3615 103 IVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVV 181 (211)
Q Consensus 103 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~ 181 (211)
++.|++.+...+....++.|++|+++|+++.+ ...+..+|.++++.++..+.+ ||+.+++.++..++..+.. ++.
T Consensus 188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~ 263 (505)
T TIGR00898 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFV 263 (505)
T ss_pred HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-Hhc
Confidence 99999999999999999999999999999999 778889999999988766644 9999999888777665555 557
Q ss_pred cCCCC
Q psy3615 182 YDTPD 186 (211)
Q Consensus 182 ~~~~~ 186 (211)
||+|+
T Consensus 264 ~esp~ 268 (505)
T TIGR00898 264 PESPR 268 (505)
T ss_pred CCChH
Confidence 88765
No 34
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.85 E-value=1e-20 Score=151.22 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=132.9
Q ss_pred cccccccccccC-CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc-cH
Q psy3615 18 LSSRGVLFQQDG-DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW-DY 95 (211)
Q Consensus 18 ~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~-~~ 95 (211)
+.......+..| .+++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+.+.++.++.+++.+++.+. + ++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~--~~~~ 91 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA--VQSY 91 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--hhhH
Confidence 344455666677 4889999999999999999999999999999999999999999999999999999988877 7 89
Q ss_pred HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc----------ccCchHHH-
Q psy3615 96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID----------TLGWEAAF- 163 (211)
Q Consensus 96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~----------~~gw~~~~- 163 (211)
+.+++.|++.|++.+ ..+....++.+++|+++|+++++ .....++|..+++.+++.+.+ ..+||+.|
T Consensus 92 ~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~ 170 (366)
T TIGR00886 92 SVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFV 170 (366)
T ss_pred HHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhH
Confidence 999999999999865 45667889999999999999999 667777787777777665554 34899999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCC
Q psy3615 164 YVTGALGVVWWVVWMIVVYDTP 185 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~ 185 (211)
+..+.+..+..++.+...+|.|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~ 192 (366)
T TIGR00886 171 IVPAGILLLPALLIFFVGADTP 192 (366)
T ss_pred HHHHHHHHHHHHHHHHhcccCC
Confidence 4445555444444444445544
No 35
>PRK11043 putative transporter; Provisional
Probab=99.85 E-value=1.3e-20 Score=152.62 Aligned_cols=158 Identities=17% Similarity=0.085 Sum_probs=139.1
Q ss_pred cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615 20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA 99 (211)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (211)
...++.+..+.+++++|+++++.+++.+++.++..++++++|+++||+|||+++..+..+..++.+++.+. ++++.++
T Consensus 21 ~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~ 98 (401)
T PRK11043 21 ATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV--ESAAQLL 98 (401)
T ss_pred HHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh--cCHHHHH
Confidence 34445555566789999999999999999999999999999999999999999999999999888888777 8899999
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
+.|++.|++.+...+...+++.|+++++++++..+ ......++..++|.+++++.+..|||+.|++.+.+.++..+..+
T Consensus 99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999988878888899999999999999988 77888899999999999999999999999998887777665554
Q ss_pred h
Q psy3615 179 I 179 (211)
Q Consensus 179 ~ 179 (211)
+
T Consensus 179 ~ 179 (401)
T PRK11043 179 R 179 (401)
T ss_pred H
Confidence 4
No 36
>KOG2533|consensus
Probab=99.85 E-value=2.2e-20 Score=153.38 Aligned_cols=165 Identities=21% Similarity=0.327 Sum_probs=148.2
Q ss_pred CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhh
Q psy3615 31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGG 110 (211)
Q Consensus 31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g 110 (211)
+.++.+....+.+.+.+++.+++++++++++.+.||++..+.+....+++++..++.... +|++.+++.|+++|+.++
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~--~s~~~~ialr~llGl~es 149 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV--HSFPGLIALRFLLGLFES 149 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhc
Confidence 678899999999999999999999999999999999998888888888888877666666 899999999999999999
Q ss_pred cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh------cccCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615 111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI------DTLGWEAAFYVTGALGVVWWVVWMIVVYD 183 (211)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~ 183 (211)
..+|....+++.|+.+++|++.++ ++...++|.++|..++..+. ...||||.|++.+++.++..++.++++|+
T Consensus 150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 999999999999999999999999 88999999999999998863 34689999999999999999999999999
Q ss_pred CCCCCCCCChHHHH
Q psy3615 184 TPDQHPRVSAEEKE 197 (211)
Q Consensus 184 ~~~~~~~~~~~~~~ 197 (211)
.|.+..-.+++|+.
T Consensus 230 ~P~~~~fl~~~ek~ 243 (495)
T KOG2533|consen 230 NPSKAWFLTDEEKE 243 (495)
T ss_pred ChhhccccchHHHH
Confidence 88766555555543
No 37
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.84 E-value=4.5e-21 Score=159.31 Aligned_cols=168 Identities=17% Similarity=0.245 Sum_probs=132.4
Q ss_pred cccccccccccccCCCcccccCCchh-hHH-----HHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh
Q psy3615 16 ISLSSRGVLFQQDGDSGSLFHWDSNV-QNL-----VLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA 89 (211)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~~~~s~~~-~~~-----~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~ 89 (211)
++.+|..++.+..+.+.++++.+.++ ..+ +.++..++..+++++.|+++||+|||+++.++.++++++.+++++
T Consensus 27 ~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~ 106 (490)
T PRK10642 27 MEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGL 106 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence 44567777777778888888644432 122 246778899999999999999999999999999999999999988
Q ss_pred hhcccHHH--------HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh------
Q psy3615 90 AAYWDYKA--------MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI------ 154 (211)
Q Consensus 90 ~~~~~~~~--------~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~------ 154 (211)
+ ++++. +++.|+++|++.|..++...++++|++|+++|++..+ ...+..+|..+++.+...+.
T Consensus 107 ~--~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~ 184 (490)
T PRK10642 107 I--PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEA 184 (490)
T ss_pred c--ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 8 77754 7899999999999999999999999999999999988 76777778777776554432
Q ss_pred --cccCchHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy3615 155 --DTLGWEAAFYVTGALGVVWWVVWMIVVYDTPD 186 (211)
Q Consensus 155 --~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (211)
+.+|||+.|++.+.+.++.. +.....||+|+
T Consensus 185 ~~~~~gWR~~f~i~~~~~l~~~-~~~~~~~esp~ 217 (490)
T PRK10642 185 NFLDWGWRIPFFIALPLGIIGL-YLRHALEETPA 217 (490)
T ss_pred HhcCccHHHHHHHHHHHHHHHH-HHHHcCCCChh
Confidence 25799999999765555433 33345677654
No 38
>PRK10504 putative transporter; Provisional
Probab=99.84 E-value=1.3e-20 Score=155.76 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=144.9
Q ss_pred ccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHH
Q psy3615 19 SSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAM 98 (211)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 98 (211)
.+...+.+..|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||++++.+..+.+++.+++.+. ++++.+
T Consensus 24 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l 101 (471)
T PRK10504 24 LDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS--GTLNEL 101 (471)
T ss_pred HhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh--CCHHHH
Confidence 344555566777888999999999999999999999999999999999999999999999998888887776 789999
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615 99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW 177 (211)
Q Consensus 99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~ 177 (211)
++.|++.|++.+...+....++.|++|+++|+++.+ .....++|..++|.+++.+.++.|||+.|++......+..+..
T Consensus 102 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~ 181 (471)
T PRK10504 102 LLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIAT 181 (471)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 7788899999999999999999999999999887776666665
Q ss_pred HhhhcCCC
Q psy3615 178 MIVVYDTP 185 (211)
Q Consensus 178 ~~~~~~~~ 185 (211)
....|+.+
T Consensus 182 ~~~~~~~~ 189 (471)
T PRK10504 182 LMLMPNYT 189 (471)
T ss_pred HHhCCCcc
Confidence 55555443
No 39
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.84 E-value=6.1e-21 Score=156.19 Aligned_cols=156 Identities=16% Similarity=0.101 Sum_probs=125.9
Q ss_pred cccccccccccccCCCccccc---CCchhhHHHH---HHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh
Q psy3615 16 ISLSSRGVLFQQDGDSGSLFH---WDSNVQNLVL---GSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA 89 (211)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~~~---~s~~~~~~~~---~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~ 89 (211)
++++|+..+++..+.+.++++ .+..+.+... +...++..++++++|+++||+|||+++.++.++++++.+++++
T Consensus 33 ~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~ 112 (432)
T PRK10406 33 VEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIAC 112 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhh
Confidence 456788888888888889884 4555444444 4445555599999999999999999999999999999999887
Q ss_pred hhcccH--------HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh------
Q psy3615 90 AAYWDY--------KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI------ 154 (211)
Q Consensus 90 ~~~~~~--------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~------ 154 (211)
. +++ ..+++.|+++|++.|..++...++++|++|+++|+++.+ .+.+...|..+++.+...+.
T Consensus 113 ~--~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 190 (432)
T PRK10406 113 L--PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDA 190 (432)
T ss_pred c--CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 7 554 368899999999999999999999999999999999999 77777778777776654433
Q ss_pred --cccCchHHHHHHHHHHHHH
Q psy3615 155 --DTLGWEAAFYVTGALGVVW 173 (211)
Q Consensus 155 --~~~gw~~~~~~~~~~~~~~ 173 (211)
+.+|||++|++.++..++.
T Consensus 191 ~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 191 ELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHhccchHHHHHHHHHHHHHH
Confidence 2579999999877766554
No 40
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.84 E-value=2e-20 Score=154.01 Aligned_cols=167 Identities=13% Similarity=0.129 Sum_probs=135.7
Q ss_pred ccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh--cccHH
Q psy3615 19 SSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA--YWDYK 96 (211)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~--~~~~~ 96 (211)
.++..+.+..|++.++ |++..+.+++.+.+.++..+++++.|+++||+|||++++++.++.+++.+.+.+.. .++++
T Consensus 43 ~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 121 (452)
T PRK11273 43 LVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA 121 (452)
T ss_pred HHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHH
Confidence 3444455666778887 99999999999999999999999999999999999999999999998888776642 13677
Q ss_pred HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhh-hhhhhhhhhhcccCchHHHHHHHHHHHHHH
Q psy3615 97 AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVA-LSYPLCGVVIDTLGWEAAFYVTGALGVVWW 174 (211)
Q Consensus 97 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~-~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~ 174 (211)
.+++.|++.|++.+..++.....+.+++|+++|+++++ .+.+..+|.. .+|.+...+....+||+.|++.+.+.++..
T Consensus 122 ~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~ 201 (452)
T PRK11273 122 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVA 201 (452)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 88999999999999888888888999999999999999 7788888764 455543333334589999999888877766
Q ss_pred HHHHhhhcCCCC
Q psy3615 175 VVWMIVVYDTPD 186 (211)
Q Consensus 175 ~~~~~~~~~~~~ 186 (211)
++..++.||+|+
T Consensus 202 ~l~~~~~~~~~~ 213 (452)
T PRK11273 202 LFAFAMMRDTPQ 213 (452)
T ss_pred HHHHHHccCCHh
Confidence 666666676654
No 41
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.84 E-value=3.2e-20 Score=152.58 Aligned_cols=165 Identities=18% Similarity=0.240 Sum_probs=137.2
Q ss_pred cccccccccCCCcccccCC--------chhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh
Q psy3615 20 SRGVLFQQDGDSGSLFHWD--------SNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA 91 (211)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~s--------~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~ 91 (211)
+...+....+.+..+++.+ ..+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++.+..
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 122 (481)
T TIGR00879 43 DTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA 122 (481)
T ss_pred ccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555666677777766 78999999999999999999999999999999999999999999888875542
Q ss_pred -cccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhh---hhhhcccCchHHHHHH
Q psy3615 92 -YWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLC---GVVIDTLGWEAAFYVT 166 (211)
Q Consensus 92 -~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~---~~l~~~~gw~~~~~~~ 166 (211)
..+++.+++.|++.|++.+...+....++.|++|+++|+++++ .+....+|..+++.++ ....+..+||+.|++.
T Consensus 123 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~ 202 (481)
T TIGR00879 123 FALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQ 202 (481)
T ss_pred cccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHH
Confidence 2345689999999999999999999999999999999999999 7799999999999998 6666778999999996
Q ss_pred HHHHHHHHHHHHhhhcCCC
Q psy3615 167 GALGVVWWVVWMIVVYDTP 185 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~ 185 (211)
+...++..+. .++.||+|
T Consensus 203 ~~~~~~~~~~-~~~l~~~~ 220 (481)
T TIGR00879 203 LIPAGLLFLG-LFFLPESP 220 (481)
T ss_pred HHHHHHHHHH-HhcCCCCh
Confidence 5555444333 34466665
No 42
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.83 E-value=1.4e-20 Score=156.45 Aligned_cols=149 Identities=16% Similarity=0.154 Sum_probs=136.2
Q ss_pred cccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHH
Q psy3615 18 LSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKA 97 (211)
Q Consensus 18 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~ 97 (211)
..+.....+..|.+.+++|+|+.+.+++.+.+.+++.++.++.|+++||+|||+++..+.++.+++.++..+. ++++.
T Consensus 33 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~ 110 (496)
T PRK03893 33 GFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA--PGYWT 110 (496)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--hHHHH
Confidence 3455666677788899999999999999999999999999999999999999999999999999998888877 88999
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHH
Q psy3615 98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGA 168 (211)
Q Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~ 168 (211)
+++.|++.|++.+..++....++.|++|+++|+++++ ......+|..++|.+.+.+.+..+||+.|++...
T Consensus 111 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~ 182 (496)
T PRK03893 111 LFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL 182 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 7788999999999999999999999999887443
No 43
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.83 E-value=1.2e-19 Score=151.14 Aligned_cols=149 Identities=19% Similarity=0.195 Sum_probs=126.3
Q ss_pred cCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhccc------HHHHHHHHHHHHhhh
Q psy3615 36 HWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD------YKAMAGLRIVQGVIG 109 (211)
Q Consensus 36 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~l~G~~~ 109 (211)
+.+..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+++.++ ++ ++.+++.|++.|++.
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~r~l~G~~~ 129 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS--PGSSPKSVMATLCFWRFWLGVGI 129 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc--cCcccchHHHHHHHHHHHHHHHH
Confidence 4556678899999999999999999999999999999999999999988887766 33 678999999999999
Q ss_pred hcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc-----------------------ccCchHHHHH
Q psy3615 110 GLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID-----------------------TLGWEAAFYV 165 (211)
Q Consensus 110 g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-----------------------~~gw~~~~~~ 165 (211)
|...+....+++|++|+++|+++++ .+....+|..+++.+...+.. ..+||+.+.+
T Consensus 130 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~ 209 (502)
T TIGR00887 130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGF 209 (502)
T ss_pred hhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHH
Confidence 9999999999999999999999999 778899999988888765432 2379999987
Q ss_pred HHHHHHHHHHHHHhhhcCCCCC
Q psy3615 166 TGALGVVWWVVWMIVVYDTPDQ 187 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~ 187 (211)
.++..++..+. .+++||+|+.
T Consensus 210 ~~ip~~i~~~~-~~~lpESpr~ 230 (502)
T TIGR00887 210 GAVPALLALYF-RLTIPETPRY 230 (502)
T ss_pred HHHHHHHHHHH-HHhCCCCHHH
Confidence 76665554443 4568999874
No 44
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.83 E-value=5.7e-20 Score=149.04 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=140.7
Q ss_pred cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q psy3615 22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGL 101 (211)
Q Consensus 22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (211)
.+++.+++++++++|+|+.+.|.+.+...+...+.+++.|+++||+|||+++.++.++.+++.+++.+. ++++.+++.
T Consensus 28 ~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~ 105 (400)
T PRK11646 28 VVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--HEPWLLWLS 105 (400)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--ccHHHHHHH
Confidence 344555666788999999999999999999999999999999999999999999999999999988777 789999999
Q ss_pred HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615 102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIV 180 (211)
Q Consensus 102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~ 180 (211)
|++.|++.+...+...+++.+++|+++|+++++ .....++|..+||.+++++. ..+|++.|++.+...++..++..+.
T Consensus 106 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~ 184 (400)
T PRK11646 106 CILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWL 184 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998888999999999999999999999 78999999999999999998 6799999999887776665554444
Q ss_pred hcC
Q psy3615 181 VYD 183 (211)
Q Consensus 181 ~~~ 183 (211)
.||
T Consensus 185 ~~~ 187 (400)
T PRK11646 185 LPA 187 (400)
T ss_pred CCc
Confidence 554
No 45
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.83 E-value=3.1e-20 Score=149.68 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=137.9
Q ss_pred cccccccccCCCcccccCCchh-hHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHH
Q psy3615 20 SRGVLFQQDGDSGSLFHWDSNV-QNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAM 98 (211)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~s~~~-~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 98 (211)
-|..+++..|++.+++|+|+++ .|.+.+.+..++++++++.|+++||+|.|+++.++.+.+++..++.+++ +++..+
T Consensus 41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--~Sl~~L 118 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--TSVWHM 118 (511)
T ss_pred hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 3455667778899999999999 9999999999999999999999999999999999999999999999888 889999
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHH--HHHHHHHHH
Q psy3615 99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVT--GALGVVWWV 175 (211)
Q Consensus 99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~--~~~~~~~~~ 175 (211)
.+.|++.|++.|..+ +...++.+|+|+++|+++.+ ...+..+|.+++++++++ ...+|||+-+... .+...+..+
T Consensus 119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~ 196 (511)
T TIGR00806 119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSV 196 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999999999999 889999999999999999 5567998754433 222223333
Q ss_pred HHHhhhcCC
Q psy3615 176 VWMIVVYDT 184 (211)
Q Consensus 176 ~~~~~~~~~ 184 (211)
++.+++|..
T Consensus 197 ~~a~~LP~~ 205 (511)
T TIGR00806 197 FLALFLKRP 205 (511)
T ss_pred HHHHhCCCC
Confidence 334456633
No 46
>PRK10054 putative transporter; Provisional
Probab=99.83 E-value=4.2e-20 Score=149.62 Aligned_cols=159 Identities=11% Similarity=0.059 Sum_probs=137.0
Q ss_pred ccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHH
Q psy3615 23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLR 102 (211)
Q Consensus 23 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 102 (211)
..+.+++++++++|+|..+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++..+. ++++.+++.+
T Consensus 26 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 103 (395)
T PRK10054 26 TLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV--NNVTLVVLFF 103 (395)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH--hHHHHHHHHH
Confidence 34456677788999999999999999999999999999999999999999999999988888888777 7888888889
Q ss_pred HHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhh
Q psy3615 103 IVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVV 181 (211)
Q Consensus 103 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~ 181 (211)
.+.|.+.+...+....+..|..|+++|+++++ .+...++|..++|++++.+.+ .+|+..|+..++..++..++..+..
T Consensus 104 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~ 182 (395)
T PRK10054 104 ALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWV 182 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHH
Confidence 88888877778888999999999999999999 888899999999999998875 6899999988777766655544445
Q ss_pred cCC
Q psy3615 182 YDT 184 (211)
Q Consensus 182 ~~~ 184 (211)
|++
T Consensus 183 ~~~ 185 (395)
T PRK10054 183 QRS 185 (395)
T ss_pred hcc
Confidence 443
No 47
>PRK03699 putative transporter; Provisional
Probab=99.83 E-value=3.2e-20 Score=150.21 Aligned_cols=155 Identities=12% Similarity=0.033 Sum_probs=136.6
Q ss_pred ccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHH
Q psy3615 21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAG 100 (211)
Q Consensus 21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 100 (211)
...+....|++.+++|+|+++.+++.+.+.+++.+++++.|++.||+|||+++..+..+.+++.++..+. ++++.+++
T Consensus 23 ~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~--~~~~~~~~ 100 (394)
T PRK03699 23 VIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS--HSLALFSI 100 (394)
T ss_pred HHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--chHHHHHH
Confidence 3445666778899999999999999999999999999999999999999999999999999998888777 88999999
Q ss_pred HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc-ccCchHHHHHHHHHHHHHHHHH
Q psy3615 101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID-TLGWEAAFYVTGALGVVWWVVW 177 (211)
Q Consensus 101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-~~gw~~~~~~~~~~~~~~~~~~ 177 (211)
.|++.|++.+...+....++.|++|+++|+++++ .+....+|..++|.+.+.+.+ ..+||+.|.+.+.+.++..++.
T Consensus 101 ~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 101 AMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred HHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888999999999999999999 778888898999999887764 5799999998887766655443
No 48
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.83 E-value=4.5e-20 Score=151.31 Aligned_cols=167 Identities=14% Similarity=0.173 Sum_probs=138.2
Q ss_pred ccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh--cccHH
Q psy3615 19 SSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA--YWDYK 96 (211)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~--~~~~~ 96 (211)
.++..+....|.+++ +|+|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..+.. .++++
T Consensus 41 ~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (438)
T TIGR00712 41 LVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIA 119 (438)
T ss_pred HHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHH
Confidence 344445555666665 599999999999999999999999999999999999999999999988887765431 13567
Q ss_pred HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc-ccCchHHHHHHHHHHHHHH
Q psy3615 97 AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID-TLGWEAAFYVTGALGVVWW 174 (211)
Q Consensus 97 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-~~gw~~~~~~~~~~~~~~~ 174 (211)
.+.+.|++.|++.+..++.....+.|++|+++|+++++ .+....+|..+++++.+...+ ..+||+.|++.+++.++..
T Consensus 120 ~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~ 199 (438)
T TIGR00712 120 IMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVA 199 (438)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 77889999999999998989999999999999999999 778889999998888776444 4689999999988887766
Q ss_pred HHHHhhhcCCCC
Q psy3615 175 VVWMIVVYDTPD 186 (211)
Q Consensus 175 ~~~~~~~~~~~~ 186 (211)
++.+++.||+|+
T Consensus 200 ~~~~~~~~~~~~ 211 (438)
T TIGR00712 200 LFAFAMMRDTPQ 211 (438)
T ss_pred HHHHHhccCCHH
Confidence 666666666543
No 49
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.83 E-value=1.2e-19 Score=145.32 Aligned_cols=159 Identities=12% Similarity=0.023 Sum_probs=131.2
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHH-HHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGV-SNLAMFLISFALPAAAYWDYKAMAGLRIVQ 105 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 105 (211)
.++++++++|.|+.+.+++.+.+.+...+.+++.|+++||+||||.++. +.....++.+++.++ ++++.+++.|++.
T Consensus 20 l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 97 (375)
T TIGR00899 20 LSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN--RNYFLLLVLGVLL 97 (375)
T ss_pred HHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHH
Confidence 4445788999999999999999999999999999999999999987654 555555666667666 7888888999999
Q ss_pred HhhhhcchHHHHHHhhhccCCCchhhH--hh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhc
Q psy3615 106 GVIGGLAWPSMHHLVAHWIPPTERSQF--IT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVY 182 (211)
Q Consensus 106 G~~~g~~~~~~~~~~~~~~~~~~r~~~--~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~ 182 (211)
|.+.+...|...++..|+.|+++|.+. .+ .....++|..++|++++.+.+..+||+.|++.+.+.++..++.++..|
T Consensus 98 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 98 SSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred HhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888777888888888999887777754 45 557788999999999999999899999999998887777666666677
Q ss_pred CCCCC
Q psy3615 183 DTPDQ 187 (211)
Q Consensus 183 ~~~~~ 187 (211)
|.|++
T Consensus 178 ~~~~~ 182 (375)
T TIGR00899 178 SYPRG 182 (375)
T ss_pred CcccC
Confidence 65543
No 50
>PRK12382 putative transporter; Provisional
Probab=99.82 E-value=1.5e-19 Score=146.04 Aligned_cols=141 Identities=16% Similarity=0.095 Sum_probs=121.3
Q ss_pred CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhh---hh---hcccHHHHHHHHH
Q psy3615 30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALP---AA---AYWDYKAMAGLRI 103 (211)
Q Consensus 30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~---~~---~~~~~~~~~~~~~ 103 (211)
++++++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.+...++.+... .. ..++++.+++.|+
T Consensus 41 ~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 120 (392)
T PRK12382 41 FVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRL 120 (392)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999998887766544321 11 1246788999999
Q ss_pred HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHH
Q psy3615 104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALG 170 (211)
Q Consensus 104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~ 170 (211)
+.|++.+...+...+++.|++|+++|+++++ .......|..++|++++.+.+..||++.+.+.....
T Consensus 121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~ 188 (392)
T PRK12382 121 ILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLP 188 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 9999999888888999999999999999999 778889999999999999999899998776654443
No 51
>KOG3764|consensus
Probab=99.82 E-value=3.2e-19 Score=139.22 Aligned_cols=150 Identities=21% Similarity=0.207 Sum_probs=139.4
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcc
Q psy3615 33 SLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLA 112 (211)
Q Consensus 33 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 112 (211)
++.+-...++|++.++..+.+.+.+++.|.+.||+|+|..+++|.+++....+++++. +++++++++|.++|+|.+..
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg--~sy~~l~vAR~LQgvgsA~~ 176 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG--NSYPMLFVARSLQGVGSAFA 176 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc--chhHHHHHHHHHhhhhHHHH
Confidence 4455566789999999999999999999999999999999999999999999999888 89999999999999999999
Q ss_pred hHHHHHHhhhccCCC-chhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCC
Q psy3615 113 WPSMHHLVAHWIPPT-ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDT 184 (211)
Q Consensus 113 ~~~~~~~~~~~~~~~-~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (211)
..+..+++++.+|++ +|++++| ...+.++|..+||+++|.+.+..|.+.+|.+.++++++...+.++.++++
T Consensus 177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~ 250 (464)
T KOG3764|consen 177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPT 250 (464)
T ss_pred HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcc
Confidence 999999999999987 5899999 88999999999999999999999999999999999999888887766543
No 52
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.82 E-value=1.1e-19 Score=147.22 Aligned_cols=152 Identities=14% Similarity=0.069 Sum_probs=128.1
Q ss_pred cccccccc-CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh-c-----c
Q psy3615 21 RGVLFQQD-GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA-Y-----W 93 (211)
Q Consensus 21 ~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~-~-----~ 93 (211)
.+...+.. ..+++++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++...+.+.. . .
T Consensus 31 ~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (399)
T PRK05122 31 IGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVL 110 (399)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchh
Confidence 33333343 446789999999999999999999999999999999999999999999988877665544321 0 1
Q ss_pred cHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHH
Q psy3615 94 DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVV 172 (211)
Q Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~ 172 (211)
+++.+++.|++.|++.+...+....++.|+.|+++|+++++ ......+|..+++.+++.+.+..||+..+++.....++
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~ 190 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALL 190 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999999 77888999999999999999999999988876655443
No 53
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.82 E-value=1.8e-19 Score=146.06 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=135.4
Q ss_pred ccccccCCCcccccCCchh-----hHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHH
Q psy3615 23 VLFQQDGDSGSLFHWDSNV-----QNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKA 97 (211)
Q Consensus 23 ~~~~~~~~i~~~~~~s~~~-----~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~ 97 (211)
...+..|.+.+++|++..+ .+++.+++.++..+++++.|+++||+|||+++..+.+..+++.+++.+. ++++.
T Consensus 32 ~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~ 109 (408)
T PRK09874 32 LVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA--QNIWQ 109 (408)
T ss_pred HhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH--hhHHH
Confidence 3344555567788888654 4888999999999999999999999999999999999988888877766 78999
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615 98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV 176 (211)
Q Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~ 176 (211)
+++.|++.|++.+ ..+....++.++.|+++|+++++ ......+|..++|.+++.+.+..+|++.|++.+.+.++..+.
T Consensus 110 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 188 (408)
T PRK09874 110 FLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLV 188 (408)
T ss_pred HHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 9999999999765 56777888999999999999999 778889999999999999999899999999988887776666
Q ss_pred HHhhhcCCC
Q psy3615 177 WMIVVYDTP 185 (211)
Q Consensus 177 ~~~~~~~~~ 185 (211)
..+..+|++
T Consensus 189 ~~~~~~~~~ 197 (408)
T PRK09874 189 TLFCIRENF 197 (408)
T ss_pred HHHHhccCc
Confidence 655566543
No 54
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.82 E-value=1.1e-19 Score=149.61 Aligned_cols=161 Identities=11% Similarity=0.110 Sum_probs=136.9
Q ss_pred ccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHH
Q psy3615 19 SSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAM 98 (211)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 98 (211)
.++..++...+.+.+++|++.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.+++.+. ++++.+
T Consensus 33 ~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~l 110 (455)
T TIGR00892 33 AFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS--SNVIEL 110 (455)
T ss_pred hhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh--hhHHHH
Confidence 344445556677889999999999999999999999999999999999999999999999999988888777 778877
Q ss_pred HH-HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615 99 AG-LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV 176 (211)
Q Consensus 99 ~~-~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~ 176 (211)
++ .|++.|++.+...+....++.++++ ++|+++++ .+.+..+|..++|++.+.+.+..|||++|++.+++.++..+.
T Consensus 111 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~ 189 (455)
T TIGR00892 111 YLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVC 189 (455)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 65 5689999998776777788899996 78999999 889999999999999999999999999999998887765554
Q ss_pred HHhhhc
Q psy3615 177 WMIVVY 182 (211)
Q Consensus 177 ~~~~~~ 182 (211)
.++..+
T Consensus 190 ~~~~~~ 195 (455)
T TIGR00892 190 GALMRP 195 (455)
T ss_pred HHHhCC
Confidence 444333
No 55
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.81 E-value=1.4e-19 Score=149.92 Aligned_cols=159 Identities=11% Similarity=0.022 Sum_probs=130.1
Q ss_pred cccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q psy3615 24 LFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRI 103 (211)
Q Consensus 24 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 103 (211)
..+..|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++..+. ++++.+++.|+
T Consensus 55 ~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~s~~~l~~~r~ 132 (476)
T PLN00028 55 AAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--SSATGFIAVRF 132 (476)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHH
Confidence 4455667899999999999999999999999999999999999999999999999999988888777 78899999999
Q ss_pred HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh----c-----ccCchHHHHHHHHHHHHH
Q psy3615 104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI----D-----TLGWEAAFYVTGALGVVW 173 (211)
Q Consensus 104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~----~-----~~gw~~~~~~~~~~~~~~ 173 (211)
+.|++.+.. .....++++++|+++|+++++ .....++|..+++.+...+. + ..|||+.|++.+++.++.
T Consensus 133 l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~ 211 (476)
T PLN00028 133 FIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIM 211 (476)
T ss_pred HHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH
Confidence 999988764 345668899999999999999 76666677766665554432 2 258999999999888777
Q ss_pred HHHHHhhhcCCC
Q psy3615 174 WVVWMIVVYDTP 185 (211)
Q Consensus 174 ~~~~~~~~~~~~ 185 (211)
.++.++..++.|
T Consensus 212 ~l~~~~~~~~~p 223 (476)
T PLN00028 212 GILVLTLGQDLP 223 (476)
T ss_pred HHHHHHHcCcCC
Confidence 666655444444
No 56
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.81 E-value=1.2e-19 Score=146.83 Aligned_cols=149 Identities=14% Similarity=0.008 Sum_probs=125.6
Q ss_pred CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhh
Q psy3615 30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIG 109 (211)
Q Consensus 30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~ 109 (211)
.+.+++|.+..+.+++.+.+.+.+.+.+++.|+++||+|||++++++.++.+++.+.+.+. .+. ++.|+++|++.
T Consensus 28 ~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~--~~~---~~~r~l~G~~~ 102 (393)
T PRK11195 28 ALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG--IHP---LLAYGLVGIGA 102 (393)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHH
Confidence 3567889899999999999999999999999999999999999999999998888776655 443 67899999999
Q ss_pred hcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615 110 GLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTP 185 (211)
Q Consensus 110 g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (211)
+...|...+++.|++|+++|+++++ ......+|..+||.+++.+.+. .|+..+.+.+...++.. +..+..||++
T Consensus 103 a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~-~~~~~l~~~~ 177 (393)
T PRK11195 103 AAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAA-LFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHhcCCCCc
Confidence 9999999999999999999999999 7788999999999999999885 47777766655443333 3334466654
No 57
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.81 E-value=2.2e-19 Score=146.04 Aligned_cols=156 Identities=12% Similarity=0.096 Sum_probs=135.3
Q ss_pred cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh-hcccHHHHHH
Q psy3615 22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA-AYWDYKAMAG 100 (211)
Q Consensus 22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~ 100 (211)
+...+..|.+++++|+++.+.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.+++... ..++++.+++
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~ 99 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLV 99 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 445567788899999999999999999999999999999999999999999999999999988775432 1257899999
Q ss_pred HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-----------------------
Q psy3615 101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT----------------------- 156 (211)
Q Consensus 101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~----------------------- 156 (211)
.|++.|++.|...+..+.++.+..|+++|++.++ .+...++|..++|.+++.+...
T Consensus 100 ~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (410)
T TIGR00885 100 GLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKH 179 (410)
T ss_pred HHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999 7899999999999998877422
Q ss_pred ---cCchHHHHHHHHHHHHHHHHH
Q psy3615 157 ---LGWEAAFYVTGALGVVWWVVW 177 (211)
Q Consensus 157 ---~gw~~~~~~~~~~~~~~~~~~ 177 (211)
.+||++|++.+.+.++..++.
T Consensus 180 ~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 180 SDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999998888766654443
No 58
>PRK09952 shikimate transporter; Provisional
Probab=99.81 E-value=6.7e-20 Score=150.32 Aligned_cols=154 Identities=16% Similarity=0.197 Sum_probs=121.8
Q ss_pred cccccccccccccCC-Ccccc--cCCchhhHHHH-----HHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHh
Q psy3615 16 ISLSSRGVLFQQDGD-SGSLF--HWDSNVQNLVL-----GSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFAL 87 (211)
Q Consensus 16 ~~~~~~~~~~~~~~~-i~~~~--~~s~~~~~~~~-----~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~ 87 (211)
++++|..++....+. +.+++ +.++. .+++. ++..++..+++++.|+++||+|||+++.++.++++++.+++
T Consensus 33 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~ 111 (438)
T PRK09952 33 VDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALI 111 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 345566666655442 34444 56655 45443 34456677889999999999999999999999999999999
Q ss_pred hhhhcccHH--------HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh----
Q psy3615 88 PAAAYWDYK--------AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI---- 154 (211)
Q Consensus 88 ~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~---- 154 (211)
+++ +++. .+++.|+++|++.|..++....++.|++|+++|++..+ ...+..+|..++..+...+.
T Consensus 112 ~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~ 189 (438)
T PRK09952 112 GLL--PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTT 189 (438)
T ss_pred hcC--CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888 7765 58889999999999999999999999999999999999 77888889888877766554
Q ss_pred ----cccCchHHHHHHHHHHHH
Q psy3615 155 ----DTLGWEAAFYVTGALGVV 172 (211)
Q Consensus 155 ----~~~gw~~~~~~~~~~~~~ 172 (211)
+.+|||.+|++.++..++
T Consensus 190 ~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 190 DEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred HHHhhccChHHHHHHHHHHHHH
Confidence 247999999987766544
No 59
>PRK15075 citrate-proton symporter; Provisional
Probab=99.81 E-value=9.1e-20 Score=149.35 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=125.6
Q ss_pred ccccccccccccccCCCcccccCCchhhHHHH-HHH-----HHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhh
Q psy3615 15 PISLSSRGVLFQQDGDSGSLFHWDSNVQNLVL-GSF-----FWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALP 88 (211)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~-~~~-----~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~ 88 (211)
.+.+.|+..+.+..|.+.++++.++.+.+... +.. .++..+++++.|+++||+|||++++.+..+.+++.+++.
T Consensus 25 ~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~ 104 (434)
T PRK15075 25 FLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIA 104 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999888765443 222 222346789999999999999999999999999999998
Q ss_pred hhhcccHH--------HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhh------
Q psy3615 89 AAAYWDYK--------AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV------ 153 (211)
Q Consensus 89 ~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l------ 153 (211)
++ ++++ .+++.|++.|++.+...+....+++|++|+++|+++++ .....++|..+++.+++.+
T Consensus 105 ~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~ 182 (434)
T PRK15075 105 FV--PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSP 182 (434)
T ss_pred hC--CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 87 6765 46889999999999999999999999999999999999 6677778887777777665
Q ss_pred --hcccCchHHHHHHHH
Q psy3615 154 --IDTLGWEAAFYVTGA 168 (211)
Q Consensus 154 --~~~~gw~~~~~~~~~ 168 (211)
.+..|||+.|++...
T Consensus 183 ~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 183 AQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHhccchHHHHHHHHH
Confidence 246799999987543
No 60
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.80 E-value=8e-19 Score=142.42 Aligned_cols=153 Identities=12% Similarity=-0.012 Sum_probs=123.5
Q ss_pred CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh-hh-cccHHHHHHHHHHHHhh
Q psy3615 31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA-AA-YWDYKAMAGLRIVQGVI 108 (211)
Q Consensus 31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~l~G~~ 108 (211)
+.+++|+|+.+.+++.+.+.++..+++++.|++.||+|||+++..+..+.+++.+++.+ .. .++++.+++.|++.|++
T Consensus 39 ~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g 118 (402)
T TIGR00897 39 FLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLG 118 (402)
T ss_pred HHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcc
Confidence 44789999999999999999999999999999999999999999999999887665432 11 24678888999999999
Q ss_pred hhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhh-hhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615 109 GGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGV-ALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYD 183 (211)
Q Consensus 109 ~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~-~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~ 183 (211)
.+...+.....+.+++|+++|+++++ .....++|. .++|.+++++.+..||+..++.......+..++.++..++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (402)
T TIGR00897 119 YPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKD 195 (402)
T ss_pred hHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCC
Confidence 88877778888899999999999999 778888886 5899999999888897766665544433333333343444
No 61
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.80 E-value=6.1e-19 Score=143.74 Aligned_cols=167 Identities=11% Similarity=0.062 Sum_probs=133.1
Q ss_pred ccccccccccccCCCcc-cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh---c
Q psy3615 17 SLSSRGVLFQQDGDSGS-LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA---Y 92 (211)
Q Consensus 17 ~~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~---~ 92 (211)
++......+++.+.+.+ ++|+|++|.+++.+++.+++.+.+++.|++.||+|+|+++.++.++.++..++..++. .
T Consensus 46 ~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~ 125 (462)
T PRK15034 46 AFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPN 125 (462)
T ss_pred HHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 34455566676677665 8999999999999999999999999999999999999999999999999888887642 2
Q ss_pred ccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh-----c-----------
Q psy3615 93 WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI-----D----------- 155 (211)
Q Consensus 93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~-----~----------- 155 (211)
++++.+++.|++.|++ +..++.....+++++|+++||++++ .....++|..+++++...+. +
T Consensus 126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~ 204 (462)
T PRK15034 126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQAD 204 (462)
T ss_pred CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 6799999999999998 7788999999999999999999999 64666666665555443322 2
Q ss_pred --ccCchHHHHHHHHHHHHHHHHHHhhhcCC
Q psy3615 156 --TLGWEAAFYVTGALGVVWWVVWMIVVYDT 184 (211)
Q Consensus 156 --~~gw~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (211)
..+||.+.++...+.++..++.++..++.
T Consensus 205 g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 205 GSVMSLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 23477777787777777666666655543
No 62
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.80 E-value=2.7e-19 Score=148.29 Aligned_cols=143 Identities=18% Similarity=0.176 Sum_probs=126.0
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH-hCCcchhHHHHHHHHHHHHHhhhhhcccHH-HHHHHH
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS-LGTKVVFGVSNLAMFLISFALPAAAYWDYK-AMAGLR 102 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~ 102 (211)
..+..++++++|++..+.+++.+.+.....+..+++|+++|| +||||+++++.++++++.+.+.+. .+.. .+++.|
T Consensus 35 ~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~--~~~~~ll~~~~ 112 (489)
T PRK10207 35 GILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS--LLKPDLIFIAL 112 (489)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh--ccchhHHHHHH
Confidence 445556788899999999999999998888999999999999 999999999999999999988876 4433 455789
Q ss_pred HHHHhhhhcchHHHHHHhhhccCCC--chhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHH
Q psy3615 103 IVQGVIGGLAWPSMHHLVAHWIPPT--ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGAL 169 (211)
Q Consensus 103 ~l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~ 169 (211)
.++|++.|...+...+++.|.+|++ +|+++.+ .+...++|..++|.+++++.++.|||+.|++.++.
T Consensus 113 ~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 113 GTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred HHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 9999999999999999999999887 4577888 88999999999999999999999999999986543
No 63
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.6e-19 Score=140.95 Aligned_cols=171 Identities=14% Similarity=0.154 Sum_probs=150.3
Q ss_pred cccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh-ccc
Q psy3615 16 ISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA-YWD 94 (211)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~-~~~ 94 (211)
+++.-..+++++.+.+++++|+|++|.+++.++..+...+..++.|.+.||||.|++...+.++..+..+...++. .++
T Consensus 25 v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~ 104 (417)
T COG2223 25 VGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPS 104 (417)
T ss_pred HHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 3455667778888899999999999999999999999999999999999999999999999999999988887763 334
Q ss_pred HHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccC---chHHHHHHHHHHH
Q psy3615 95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLG---WEAAFYVTGALGV 171 (211)
Q Consensus 95 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~g---w~~~~~~~~~~~~ 171 (211)
++.+++.+++.|++ |..++.....+++++|++++|.++|++...++|..+...++..+....+ |+....+.....+
T Consensus 105 ~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~ 183 (417)
T COG2223 105 TWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALA 183 (417)
T ss_pred hHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 66999999999998 4577888999999999999999999555999999999999888888888 9999999888888
Q ss_pred HHHHHHHhhhcCCCCC
Q psy3615 172 VWWVVWMIVVYDTPDQ 187 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~~ 187 (211)
+..+..++...|.|..
T Consensus 184 v~~v~~~~~~~d~p~~ 199 (417)
T COG2223 184 IAAVLAWLGMNDVPEH 199 (417)
T ss_pred HHHHHHHHHhCCChhh
Confidence 8888888878777664
No 64
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.79 E-value=5.6e-19 Score=146.12 Aligned_cols=152 Identities=16% Similarity=0.126 Sum_probs=133.1
Q ss_pred ccccccCCCccc--ccCCchhhHHHHHHHHHHHHHhhchhhHHHHH-hCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615 23 VLFQQDGDSGSL--FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS-LGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA 99 (211)
Q Consensus 23 ~~~~~~~~i~~~--~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (211)
+.+.++.+++++ +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++..+. ++++.+.
T Consensus 29 ~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~--~~~~~~~ 106 (475)
T TIGR00924 29 MQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS--IYPDLIF 106 (475)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc--ccHhHHH
Confidence 344455556666 99999999999999999999999999999999 899999999999999999888776 6778888
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCCc---hhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHH
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTE---RSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWV 175 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~---r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~ 175 (211)
+.+.+.|++.|...+...+++++++|+++ |+++.+ .+...++|..+||.+++++.++.||++.|++.++..++..+
T Consensus 107 ~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l 186 (475)
T TIGR00924 107 YGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLL 186 (475)
T ss_pred HHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998764 888999 88999999999999999999989999999987765554433
Q ss_pred H
Q psy3615 176 V 176 (211)
Q Consensus 176 ~ 176 (211)
.
T Consensus 187 ~ 187 (475)
T TIGR00924 187 T 187 (475)
T ss_pred H
Confidence 3
No 65
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.79 E-value=8.6e-19 Score=138.55 Aligned_cols=156 Identities=24% Similarity=0.344 Sum_probs=140.0
Q ss_pred cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615 20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA 99 (211)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (211)
+.....+..+.+.+++|.+..+.+++.+...++..+++++.|+++||+|||+.+..+..+..++.+...+. ++++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (352)
T cd06174 14 DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA--SSLWLLL 91 (352)
T ss_pred hhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh--ccHHHHH
Confidence 34445555566778889999999999999999999999999999999999999999999999999988777 8899999
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW 177 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~ 177 (211)
+.|++.|++.+...+....++.|++|+++|++.++ ......+|..++|.+++.+.+..+|++.+++.+...++..+..
T Consensus 92 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 92 VGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL 170 (352)
T ss_pred HHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 8899999999999999999998899999998877766655443
No 66
>KOG0255|consensus
Probab=99.79 E-value=1.7e-18 Score=144.93 Aligned_cols=150 Identities=19% Similarity=0.172 Sum_probs=131.7
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcc
Q psy3615 33 SLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLA 112 (211)
Q Consensus 33 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 112 (211)
+.++.+........+++.+|..++.+++|.++||+|||+++++++++..++.++.+++ +|++.+++.|++.|++.+..
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a--~~~~~~~~~Rfl~G~~~~~~ 188 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA--PNYWMFLIFRFLSGFFGSGP 188 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhccch
Confidence 5667777888999999999999999999999999999999999999999999999888 99999999999999999999
Q ss_pred hHHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy3615 113 WPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQ 187 (211)
Q Consensus 113 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (211)
......+++|++++++|+.+.........++.++++.++++.+ +||+.+++.....++..++ ++..+|+|+.
T Consensus 189 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rw 260 (521)
T KOG0255|consen 189 LTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRW 260 (521)
T ss_pred hHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHH
Confidence 9999999999999999999998544445555667777777777 8999999998888877666 4546688775
No 67
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.78 E-value=1.9e-18 Score=137.94 Aligned_cols=147 Identities=12% Similarity=-0.034 Sum_probs=127.0
Q ss_pred cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q psy3615 22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGL 101 (211)
Q Consensus 22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (211)
....+..|.+++++|+|+.+.+++.+.+.++..+++++.|++.||+|||+++.++.++.+++.+.+ .. ++.+.+++.
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~--~~~~~l~~~ 93 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA--PGTALLFAG 93 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh--ccHHHHHHH
Confidence 345667788999999999999999999999999999999999999999999999998888877766 45 778888999
Q ss_pred HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc--CchHHHHHHHHHHHH
Q psy3615 102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL--GWEAAFYVTGALGVV 172 (211)
Q Consensus 102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~--gw~~~~~~~~~~~~~ 172 (211)
|++.|++.+...+.....+.|+++ ++|+++++ ......+|..+++.+.+.+.+.. +||+.|...++..++
T Consensus 94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 999999999888888888899886 68999999 77889999999999998887764 389888876655443
No 68
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.78 E-value=2.9e-19 Score=152.04 Aligned_cols=160 Identities=16% Similarity=0.205 Sum_probs=137.8
Q ss_pred cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh--------
Q psy3615 20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA-------- 91 (211)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~-------- 91 (211)
..+......+.++++++++..+.|++.+.+.++++++.++.+++.||+|||+.+.++.++++++.+++++.+
T Consensus 48 ~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~ 127 (633)
T TIGR00805 48 YNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSY 127 (633)
T ss_pred HHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccc
Confidence 345666777889999999999999999999999999999999999999999999999999999999887652
Q ss_pred -----------------------------------------cccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchh
Q psy3615 92 -----------------------------------------YWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERS 130 (211)
Q Consensus 92 -----------------------------------------~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~ 130 (211)
...+..++++|+++|+|.+..++...+++.|++|+++|+
T Consensus 128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~ 207 (633)
T TIGR00805 128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP 207 (633)
T ss_pred cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH
Confidence 002456788999999999999999999999999999999
Q ss_pred hHhh-hhhcchhhhhhhhhhhhhhhccc----------------------CchHHHHHHHHHHHHHHHHHHh
Q psy3615 131 QFIT-SYLGSSFGVALSYPLCGVVIDTL----------------------GWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 131 ~~~~-~~~~~~~g~~~~~~~~~~l~~~~----------------------gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
++++ .+....+|..+|+++++++.+.+ +|+..|++.+++.++..+..++
T Consensus 208 ~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 208 LYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 88999999999999999887542 2677788888777776655444
No 69
>PRK10133 L-fucose transporter; Provisional
Probab=99.78 E-value=1.5e-18 Score=142.29 Aligned_cols=134 Identities=14% Similarity=0.078 Sum_probs=116.4
Q ss_pred ccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh-hhcccHHHHH
Q psy3615 21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA-AAYWDYKAMA 99 (211)
Q Consensus 21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~ 99 (211)
+....+..|.+++++|+|+.+.++..+.+.+++.+++++.|++.||+|||+++..+..+++++.+++.. ...++++.++
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll 121 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFL 121 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 344556677889999999999999999999999999999999999999999999999999999877531 1237899999
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI 154 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~ 154 (211)
+.|++.|++.+...+..+.++.++.++++|.+.++ ....+.+|..+++.++..+.
T Consensus 122 ~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877777777788 77889999999998876543
No 70
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.78 E-value=2.6e-18 Score=138.43 Aligned_cols=139 Identities=14% Similarity=0.090 Sum_probs=125.0
Q ss_pred ccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHH
Q psy3615 19 SSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAM 98 (211)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 98 (211)
...+...+..|.+.+++|.|..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++...+.+. ++++.+
T Consensus 20 ~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~--~~~~~l 97 (381)
T PRK03633 20 LAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM--VGFWSW 97 (381)
T ss_pred HhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHH
Confidence 445556677778888999999999999999999999999999999999999999999999999998888777 889999
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCc
Q psy3615 99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGW 159 (211)
Q Consensus 99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw 159 (211)
++.|++.|++.+...+.....+.+..++++|+++++ .....++|..++|.+++.+.+...|
T Consensus 98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 159 (381)
T PRK03633 98 LAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMS 159 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999999999888888888889999999999999 7899999999999999988775433
No 71
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.76 E-value=2.7e-18 Score=139.87 Aligned_cols=164 Identities=16% Similarity=0.052 Sum_probs=135.3
Q ss_pred ccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh---hhcccHHH
Q psy3615 21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA---AAYWDYKA 97 (211)
Q Consensus 21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 97 (211)
.....+..|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++...... ...++++.
T Consensus 33 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (417)
T PRK10489 33 LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLA 112 (417)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 344445566667788889999999999999999999999999999999999999988877776654432 12356888
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615 98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV 176 (211)
Q Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~ 176 (211)
+++.|++.|++.+...+...+++.++.|+++|+++.+ .....++|..+||.+++.+.+..+|++.|++.++..++..+.
T Consensus 113 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (417)
T PRK10489 113 IYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLP 192 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 8899999999988888889999999999999999999 778999999999999999998889999998877766655444
Q ss_pred HHhhhcCCC
Q psy3615 177 WMIVVYDTP 185 (211)
Q Consensus 177 ~~~~~~~~~ 185 (211)
. +..|+.+
T Consensus 193 ~-~~l~~~~ 200 (417)
T PRK10489 193 L-LRLPALP 200 (417)
T ss_pred H-HhCCCCC
Confidence 3 3355543
No 72
>PTZ00207 hypothetical protein; Provisional
Probab=99.76 E-value=1e-17 Score=140.13 Aligned_cols=157 Identities=11% Similarity=0.004 Sum_probs=129.4
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc----ccHHHHHH
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY----WDYKAMAG 100 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~ 100 (211)
+...+.+++++|+|..+.+++.++. .....++++.|++.||+|+|+++.++.++++++.++++++.. ++++.+.+
T Consensus 47 sv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l 125 (591)
T PTZ00207 47 NLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSV 125 (591)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 3455678999999999999988774 344567778999999999999999999999999998887522 47899999
Q ss_pred HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVAL-SYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~-~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
.|++.|++.+...+.....+.+++| ++||++.+ ......+|..+ +++..+++. .+|+..|++.+.+.++..++.+
T Consensus 126 ~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~ 202 (591)
T PTZ00207 126 YNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAI 202 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988999999999997 67999999 77888999875 555555444 3688889998888888877777
Q ss_pred hhhcCCC
Q psy3615 179 IVVYDTP 185 (211)
Q Consensus 179 ~~~~~~~ 185 (211)
.+.+++|
T Consensus 203 ~~vr~p~ 209 (591)
T PTZ00207 203 VFMRLPP 209 (591)
T ss_pred hheeCCc
Confidence 7666554
No 73
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.74 E-value=1.6e-17 Score=114.59 Aligned_cols=136 Identities=23% Similarity=0.333 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccC
Q psy3615 46 LGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIP 125 (211)
Q Consensus 46 ~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~ 125 (211)
.+.+.++..++.++.|++.||+|||+.+..+.....++.+..... ++++.+.+.+++.|++.+...+....++.|.+|
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS--SNITVLIIARFLQGFGAAFALVAGAALIADIYP 81 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence 345667888999999999999999999999998888888877666 788889999999999999999999999999999
Q ss_pred CCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615 126 PTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYD 183 (211)
Q Consensus 126 ~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~ 183 (211)
+++|++.++ ......+|..+++.+.+.+.+..+|++.+++.+...++..+...+..||
T Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999 7899999999999999999998999999998887777766665554443
No 74
>KOG0254|consensus
Probab=99.74 E-value=2.9e-17 Score=137.23 Aligned_cols=143 Identities=16% Similarity=0.176 Sum_probs=127.7
Q ss_pred hhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHh
Q psy3615 41 VQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLV 120 (211)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~ 120 (211)
+.+++.++..++..+++++.|+++|++|||+.++++.+.+.++.+++.++ +|+.+++++|++.|+|.|......+.++
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a--~~~~~l~~GR~l~G~g~G~~~~~~piy~ 167 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA--PSWYQLIVGRILTGLGVGGASVLAPVYI 167 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHhccchhhhhhcchhhH
Confidence 45899999999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred hhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc--cCchHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy3615 121 AHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT--LGWEAAFYVTGALGVVWWVVWMIVVYDTPDQ 187 (211)
Q Consensus 121 ~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~--~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (211)
+|..|++.||...+ .+....+|..++..++ ...++ .+||..+.+..+.+++..+. .++.||+|+.
T Consensus 168 sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~-~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~ 235 (513)
T KOG0254|consen 168 SEIAPAHIRGTLVSLYQLFITIGILLGYCIN-YGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRW 235 (513)
T ss_pred hhcCChhhhHHHHHHHHHHHHHHHHHHHHHh-hhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHH
Confidence 99999999999999 7788889998885544 44443 48998888888888777777 6778888874
No 75
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.74 E-value=4.2e-17 Score=130.18 Aligned_cols=160 Identities=13% Similarity=0.016 Sum_probs=125.1
Q ss_pred ccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh-----CCcchh-HHHHHHHHHHHHHhhhhh-cccH
Q psy3615 23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL-----GTKVVF-GVSNLAMFLISFALPAAA-YWDY 95 (211)
Q Consensus 23 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----G~r~~~-~~~~~~~~i~~~~~~~~~-~~~~ 95 (211)
...+..|.+.+++|+|.++.++..+. .+...+ .+++|++.||+ ||||.+ +.+.+..++......+.. ..+.
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l 83 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDL 83 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhH
Confidence 34455666788999999999999755 444444 89999999998 898874 566666666655554441 1345
Q ss_pred HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC--------chHHHHHH
Q psy3615 96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG--------WEAAFYVT 166 (211)
Q Consensus 96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g--------w~~~~~~~ 166 (211)
+.+....++.+++.+...+...+++.|++|+++|+++.+ ...+..+|..+++.+++.+.+..+ ||..|++.
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ 163 (356)
T TIGR00901 84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWT 163 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHH
Confidence 666777778888888888999999999999999999999 779999999999999999988888 99999998
Q ss_pred HHHHHHHHHHHHhhhcCC
Q psy3615 167 GALGVVWWVVWMIVVYDT 184 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~ 184 (211)
++..++..+..++..||+
T Consensus 164 ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 164 ALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHhccCC
Confidence 887776555544445554
No 76
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.74 E-value=3.3e-17 Score=132.65 Aligned_cols=158 Identities=13% Similarity=0.052 Sum_probs=117.8
Q ss_pred cccCCCcccccCCchhhHHHHHHHHH-HHHHhhchhhHHHHHhCCcchhH-HHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q psy3615 26 QQDGDSGSLFHWDSNVQNLVLGSFFW-LHWSTQIPGGVLARSLGTKVVFG-VSNLAMFLISFALPAAAYWDYKAMAGLRI 103 (211)
Q Consensus 26 ~~~~~i~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G~r~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 103 (211)
..++++++++|+|+.+.|++.+...+ +..++.+.+++ .||+|+||.++ .+.+..+++..+..+. ++++.+++.+.
T Consensus 37 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 113 (393)
T PRK15011 37 TLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN--RNYFVLLFVGV 113 (393)
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHH
Confidence 34556789999999999999876655 55555555555 99999998754 5555555666666666 77887766665
Q ss_pred HHHhhhhcchHHHHHHhhhccCCCchh--hHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615 104 VQGVIGGLAWPSMHHLVAHWIPPTERS--QFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIV 180 (211)
Q Consensus 104 l~G~~~g~~~~~~~~~~~~~~~~~~r~--~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~ 180 (211)
+.+...+...+....+..++.++++|. ...+ .....++|..++|++++.+.++.|||..|++.+...++..+..++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 193 (393)
T PRK15011 114 FLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLF 193 (393)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhh
Confidence 555545567788888888887766553 3446 5688899999999999999998999999999888877776666666
Q ss_pred hcCCCC
Q psy3615 181 VYDTPD 186 (211)
Q Consensus 181 ~~~~~~ 186 (211)
.||.++
T Consensus 194 ~~~~~~ 199 (393)
T PRK15011 194 LPSMRK 199 (393)
T ss_pred cCccCC
Confidence 676543
No 77
>KOG2615|consensus
Probab=99.74 E-value=3.3e-17 Score=127.48 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=105.2
Q ss_pred CchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHH
Q psy3615 38 DSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMH 117 (211)
Q Consensus 38 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~ 117 (211)
+..-.|.+-+.+.+.++++++.+|.++||+|||++++.++...++...+.+.+ .|+..+++.|++.|+..|- .....
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S--~~F~afv~aR~l~Gi~kgn-l~v~r 142 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS--RNFAAFVLARFLGGIFKGN-LSVIR 142 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhccCc-hHHHH
Confidence 44567899999999999999999999999999999999999999988888777 8897777889999999884 46678
Q ss_pred HHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc
Q psy3615 118 HLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID 155 (211)
Q Consensus 118 ~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~ 155 (211)
++++|..++++|+.+++ +...+++|..+||.+++++.+
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 99999999999999999 999999999999999999987
No 78
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.72 E-value=9.3e-18 Score=134.80 Aligned_cols=158 Identities=17% Similarity=0.165 Sum_probs=123.4
Q ss_pred ccccccccccccccCCCccccc--CCchhhHHHHHH-----HHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHh
Q psy3615 15 PISLSSRGVLFQQDGDSGSLFH--WDSNVQNLVLGS-----FFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFAL 87 (211)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~~~--~s~~~~~~~~~~-----~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~ 87 (211)
.+++.|+..+.+..+.+.+++. .++.+.+.+.+. ..++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3456677777766666666654 344555554443 233345688999999999999999999999999999888
Q ss_pred hhhhcccHH--------HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh----
Q psy3615 88 PAAAYWDYK--------AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI---- 154 (211)
Q Consensus 88 ~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~---- 154 (211)
.+. ++++ .+++.|+++|++.+...+....++.|++++++|++..+ ...+..+|..+++.+...+.
T Consensus 83 ~~~--~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~ 160 (394)
T TIGR00883 83 GLL--PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG 160 (394)
T ss_pred hhC--CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 877 5553 47889999999999999999999999999999999999 77888999999988776553
Q ss_pred ----cccCchHHHHHHHHHHHHHH
Q psy3615 155 ----DTLGWEAAFYVTGALGVVWW 174 (211)
Q Consensus 155 ----~~~gw~~~~~~~~~~~~~~~ 174 (211)
+..+||+.|++.+.+.++..
T Consensus 161 ~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 161 DDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHhhccchHHHHHHHHHHHHHHH
Confidence 35689999988766655443
No 79
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.71 E-value=5.8e-17 Score=134.93 Aligned_cols=148 Identities=16% Similarity=0.077 Sum_probs=123.2
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH-hCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS-LGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRI 103 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 103 (211)
.....++++++|++..+.+++.+.+........+++|+++|| +|||+++.++.++.+++..++.+.. ++.+.+.+.++
T Consensus 42 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-~~~~~l~~~~~ 120 (500)
T PRK09584 42 GIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-HDAGIVYMGMA 120 (500)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 345566778999999999888888776666777899999999 5999999999999999988877651 24566778899
Q ss_pred HHHhhhhcchHHHHHHhhhccCCCc--hhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHH
Q psy3615 104 VQGVIGGLAWPSMHHLVAHWIPPTE--RSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVW 173 (211)
Q Consensus 104 l~G~~~g~~~~~~~~~~~~~~~~~~--r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~ 173 (211)
+.|++.|...+...+++.+++|+++ |..+.+ .+.+.++|..++|.+++++.++.|||+.|++.++...+.
T Consensus 121 l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 121 TIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLIT 193 (500)
T ss_pred HHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 9999999988999999999998653 455777 789999999999999999999999999999877544443
No 80
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.71 E-value=7e-17 Score=132.98 Aligned_cols=151 Identities=18% Similarity=0.191 Sum_probs=121.3
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh-CCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL-GTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRI 103 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 103 (211)
..++.++.+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++.+++.+++.... .+...+.+...
T Consensus 30 ~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~-~~~~~~~l~l~ 108 (493)
T PRK15462 30 ALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE-IHPSFLYLSLA 108 (493)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHH
Confidence 3455566778999999999999999999999999999999999 999999999999999877665431 12233444444
Q ss_pred HHHhhhhcchHHHHHHhhhccCCC--chhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615 104 VQGVIGGLAWPSMHHLVAHWIPPT--ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV 176 (211)
Q Consensus 104 l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~ 176 (211)
+..++.|...+...++++|.+|++ +|.++.+ .+...++|..++|.+.+++.+..||++.|.+.++..++..+.
T Consensus 109 li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHH
Confidence 555666777788889999999875 6999999 888899999999999999999999999999876544443333
No 81
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.69 E-value=3.9e-16 Score=130.22 Aligned_cols=150 Identities=13% Similarity=0.064 Sum_probs=124.1
Q ss_pred cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615 28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGV 107 (211)
Q Consensus 28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~ 107 (211)
.+.+..++| +.+...|+.+...++..++.++.|+++|.||||++++.+.++..++.+.++-+ +|...++++..+.|+
T Consensus 67 l~~I~~diG-~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA--~~~~~~iag~~l~Gv 143 (599)
T PF06609_consen 67 LPYINADIG-GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA--QNMNTFIAGMVLYGV 143 (599)
T ss_pred HHHHHHhcC-CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC--CcHHHHHHHHHHHHH
Confidence 345677787 44678899999999999999999999999999999999999999999999877 999999999999999
Q ss_pred hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhh
Q psy3615 108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVV 181 (211)
Q Consensus 108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~ 181 (211)
|.|.... ....++|..|.+.|+.... .....-.....++.++..+..+.+|||.|++..+...+.+++..++.
T Consensus 144 gaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 144 GAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred hhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 9877654 4566899999999988777 55555555567888887777778999999999888777665544433
No 82
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.68 E-value=2.8e-16 Score=126.71 Aligned_cols=146 Identities=12% Similarity=0.020 Sum_probs=113.4
Q ss_pred cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCc----chhHHHHHHHHHHHHHhhhhhcccHHH
Q psy3615 22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTK----VVFGVSNLAMFLISFALPAAAYWDYKA 97 (211)
Q Consensus 22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r----~~~~~~~~~~~i~~~~~~~~~~~~~~~ 97 (211)
++..+..|.+.+++|.|..+.|++.+.+.++..+++++.|++.||+||| +.+.+...+.. ....... ++++.
T Consensus 21 g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~ 96 (382)
T PRK11128 21 GVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFA--VAFWFGA--HSFWL 96 (382)
T ss_pred HHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHH--HHHHHhc--ccHHH
Confidence 3444555556688999999999999999999999999999999999984 33322222221 1122223 67899
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHH
Q psy3615 98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVW 173 (211)
Q Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~ 173 (211)
+++.|++.|++.+...+...++..++ +++|+++.+ .....++|..++|++++++.+++|||..|++.+...++.
T Consensus 97 l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~ 171 (382)
T PRK11128 97 LFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM 171 (382)
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 99999999999888888888887776 356888888 777789999999999999999999999998877654443
No 83
>KOG0569|consensus
Probab=99.68 E-value=1.6e-15 Score=123.62 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh-cccHHHHHHHHHHHHhhhhcchHHHHHHh
Q psy3615 42 QNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA-YWDYKAMAGLRIVQGVIGGLAWPSMHHLV 120 (211)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~ 120 (211)
.+.+.+++.+|.++++.+.++++||+|||..+.+..++..++.++..++. .+++.+++++|++.|+..|......+.++
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46677899999999999999999999999999999888888777665542 25688999999999999999999999999
Q ss_pred hhccCCCchhhHhh-hhhcchhhhhhhhhhhh--hhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy3615 121 AHWIPPTERSQFIT-SYLGSSFGVALSYPLCG--VVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQ 187 (211)
Q Consensus 121 ~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~--~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (211)
.|..|++.||.... ...+..+|..++..++. .+-+...|++.+....+..++..++. .+.||+|+.
T Consensus 142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l-~~~PESPk~ 210 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALL-PFLPESPKY 210 (485)
T ss_pred hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHH-hcCCCCcch
Confidence 99999999999888 66888888888866653 23344569998888877777766555 458999974
No 84
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.67 E-value=1.1e-15 Score=127.26 Aligned_cols=161 Identities=12% Similarity=0.096 Sum_probs=119.3
Q ss_pred cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHH-hhhhhcccHHHHHHHHHH
Q psy3615 26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFA-LPAAAYWDYKAMAGLRIV 104 (211)
Q Consensus 26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~l 104 (211)
..++.+++++|.+..+.++......++..++.+..|+++||+|||+++..+.+...+.... ......++...+++.+++
T Consensus 272 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (490)
T PRK10642 272 YMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLM 351 (490)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3445556778888888888888888999999999999999999999988877654443332 222222456777788888
Q ss_pred HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHHhhhc
Q psy3615 105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWMIVVY 182 (211)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~ 182 (211)
.|++.+........++.+.+|++.|+++++ .+....+++.++|.+.+++.+..+ |+.+++.....+++..+.. ++.|
T Consensus 352 ~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~p 430 (490)
T PRK10642 352 LAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMK 430 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhc
Confidence 888777766777888889999999999999 675566667889999998887654 6766666555555555444 3468
Q ss_pred CCCCC
Q psy3615 183 DTPDQ 187 (211)
Q Consensus 183 ~~~~~ 187 (211)
|+|+.
T Consensus 431 es~~~ 435 (490)
T PRK10642 431 ETANR 435 (490)
T ss_pred cccCC
Confidence 87764
No 85
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.67 E-value=1.6e-15 Score=123.72 Aligned_cols=146 Identities=17% Similarity=0.129 Sum_probs=123.5
Q ss_pred hhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc--cHHHHHHHHHHHHhhhhcchHHHH
Q psy3615 40 NVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW--DYKAMAGLRIVQGVIGGLAWPSMH 117 (211)
Q Consensus 40 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~ 117 (211)
.+.+...++..++..++.++.|++.||+|+|+++.++.++.++...+....... +.+.+++.+++.|++.+...+...
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~ 330 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS 330 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566888899999999999999999999999999999999988876666553111 245667789999999998888989
Q ss_pred HHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcc------cCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615 118 HLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDT------LGWEAAFYVTGALGVVWWVVWMIVVYDTP 185 (211)
Q Consensus 118 ~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (211)
.++.|.+|+++|+++++ .+ ....+|..+||+++|++.++ .||+..|.+.+++.++..++..++.+|+.
T Consensus 331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999 75 67889999999999999987 46999999988888887777777777653
No 86
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.67 E-value=5.9e-19 Score=145.06 Aligned_cols=146 Identities=20% Similarity=0.197 Sum_probs=126.9
Q ss_pred chhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc---cHHHHHHHHHHHHhhhhcchHH
Q psy3615 39 SNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW---DYKAMAGLRIVQGVIGGLAWPS 115 (211)
Q Consensus 39 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~ 115 (211)
..+.++..+...++..+++++.|.++||+|||+.+.++.++..++.++..++ + +++.+.++|++.|++.|...+.
T Consensus 45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~R~~~G~~~g~~~~~ 122 (451)
T PF00083_consen 45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA--PSYNNFWMLLIGRFLIGFGIGGAYVV 122 (451)
T ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccc
Confidence 3467899999999999999999999999999999999999999999999888 7 8999999999999999999999
Q ss_pred HHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc---CchHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy3615 116 MHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL---GWEAAFYVTGALGVVWWVVWMIVVYDTPDQ 187 (211)
Q Consensus 116 ~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~---gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (211)
...++.|..|+++|++..+ ......+|..++..+.....+.. +||..++...+..++..+.. .+.||+|+.
T Consensus 123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~w 197 (451)
T PF00083_consen 123 SPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPRW 197 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccce
Confidence 9999999999999999999 77888999888887765554333 49999888877776654444 568999874
No 87
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.67 E-value=1.5e-15 Score=123.36 Aligned_cols=154 Identities=12% Similarity=0.062 Sum_probs=123.3
Q ss_pred CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh-----CCcc-hhHHHHHHHHHHHHHhhhhh-cccHHHHHHH
Q psy3615 29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL-----GTKV-VFGVSNLAMFLISFALPAAA-YWDYKAMAGL 101 (211)
Q Consensus 29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----G~r~-~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~ 101 (211)
|.+-++.|+|.+++|++...... .+.++++|+++||+ |||| .+.++....+++..+..+.. .++++.+.+.
T Consensus 23 ~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~ 100 (402)
T PRK11902 23 QAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGL 100 (402)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 33445679999999999777665 69999999999999 8776 67777888877777665542 2346777777
Q ss_pred HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-cCchHHHHHHHHHHHHHHHHHHh
Q psy3615 102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-LGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
.++.++..+...+...+++.|++|+++|+++++ ...+..+|..+++.+...+.+. .|||..|++.+++.++..+.. +
T Consensus 101 ~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~ 179 (402)
T PRK11902 101 AVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-L 179 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-H
Confidence 788888888899999999999999999999999 7788999999999999998885 599999999888776654443 3
Q ss_pred hhcCCC
Q psy3615 180 VVYDTP 185 (211)
Q Consensus 180 ~~~~~~ 185 (211)
..||++
T Consensus 180 ~~~e~~ 185 (402)
T PRK11902 180 WAPEPE 185 (402)
T ss_pred hcCCCc
Confidence 455543
No 88
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.66 E-value=1.4e-15 Score=123.27 Aligned_cols=156 Identities=8% Similarity=0.002 Sum_probs=116.7
Q ss_pred cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhh---hhh---cccHHHHH
Q psy3615 26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALP---AAA---YWDYKAMA 99 (211)
Q Consensus 26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~---~~~---~~~~~~~~ 99 (211)
..+.++++++|+++.+.+++.+.+.++..+++++.|+++||+|||+.++.+....++...... +.. .+....+.
T Consensus 24 ~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (396)
T TIGR00882 24 FFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAI 103 (396)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445556778999999999999999999999999999999999999999887766655433221 110 01233456
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
+.+++.|++.+...+....+..+..+ +++...+ .....++|..++|.+++.+.+ .+|+..|++.+.+.++..++.+
T Consensus 104 ~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 104 VGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred HHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888777766532 3445667 667788999999999998766 5999999998888777665555
Q ss_pred hhhcCC
Q psy3615 179 IVVYDT 184 (211)
Q Consensus 179 ~~~~~~ 184 (211)
...+|+
T Consensus 181 ~~~~~~ 186 (396)
T TIGR00882 181 FAKPKA 186 (396)
T ss_pred HhCCCC
Confidence 444443
No 89
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.66 E-value=7.6e-16 Score=124.23 Aligned_cols=144 Identities=10% Similarity=0.004 Sum_probs=114.8
Q ss_pred cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchh----HHHHHHHHHHHHHhhhhhcccH
Q psy3615 20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVF----GVSNLAMFLISFALPAAAYWDY 95 (211)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~----~~~~~~~~i~~~~~~~~~~~~~ 95 (211)
..++..+..|.+.+++|+|..++|++.+.+.+...++++++|.++||+||++.. ..+..+..+ ...... +++
T Consensus 19 ~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~--~~~ 94 (382)
T TIGR00902 19 AYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGA--HNA 94 (382)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhh--hhH
Confidence 344555556667788999999999999999999999999999999999985433 222222222 122234 779
Q ss_pred HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHH
Q psy3615 96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGAL 169 (211)
Q Consensus 96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~ 169 (211)
+.+++.|++.|.+.+...|...++..++ +++|++..+ .....++|..++|++++.+.++.|||..|++....
T Consensus 95 ~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 95 WLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 9999999999998888888888887665 467899999 88899999999999999999999999999887655
No 90
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.65 E-value=4.9e-16 Score=140.80 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=119.2
Q ss_pred CCcccccCCc--hhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh-hcccHHHHHHHHHHHH
Q psy3615 30 DSGSLFHWDS--NVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA-AYWDYKAMAGLRIVQG 106 (211)
Q Consensus 30 ~i~~~~~~s~--~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~G 106 (211)
.+..+++.+. ...+++.+++.++..++++++|+++||+|||++++++.++..+..++..+. ..++++.+++.|++.|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 114 (1146)
T PRK08633 35 TLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLG 114 (1146)
T ss_pred HHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3444455543 346889999999999999999999999999999998887766555443322 1257899999999999
Q ss_pred hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc--------c-CchHHHHHHHHHHHHHHHH
Q psy3615 107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT--------L-GWEAAFYVTGALGVVWWVV 176 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~--------~-gw~~~~~~~~~~~~~~~~~ 176 (211)
++.+...+...+++.|++|+++|+++++ ...+..+|.++++.+++++.+. . +|++.+.+..+...+..++
T Consensus 115 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1146)
T PRK08633 115 AQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLI 194 (1146)
T ss_pred HHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 7799999999999999998875 2 3444444433333333333
Q ss_pred HHhhhcCCCC
Q psy3615 177 WMIVVYDTPD 186 (211)
Q Consensus 177 ~~~~~~~~~~ 186 (211)
..+..|+.+.
T Consensus 195 ~~~~~~~~~~ 204 (1146)
T PRK08633 195 FAYRLPKVPA 204 (1146)
T ss_pred HHhcCcCCCC
Confidence 3344565543
No 91
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.65 E-value=2.4e-15 Score=136.40 Aligned_cols=151 Identities=10% Similarity=0.060 Sum_probs=115.8
Q ss_pred CcccccCCc-hhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHH---HHHHHHHHHhhhhhcccHHHHHHHHHHHH
Q psy3615 31 SGSLFHWDS-NVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSN---LAMFLISFALPAAAYWDYKAMAGLRIVQG 106 (211)
Q Consensus 31 i~~~~~~s~-~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~l~G 106 (211)
+.++.+.+. ...++..+++.+.++++++++|+++||+|||+++.... +...+..+..... ++++.+++.|+++|
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~--~s~~~l~~~~~l~g 119 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL--NSVPLLFAALFLMG 119 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHH
Confidence 334443333 34688888999999999999999999999999764322 2222222222223 68999999999999
Q ss_pred hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCC
Q psy3615 107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDT 184 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (211)
++.+...|+..+++.+++++++|+++++ ..+..++|.++||++++++.+..+|++.|+......++..++ .+..++.
T Consensus 120 i~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 197 (1140)
T PRK06814 120 IHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLA-SLFIPKT 197 (1140)
T ss_pred HHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH-HhhCCCC
Confidence 9999999999999999999999999999 889999999999999999999999999885444444443333 3445544
No 92
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.64 E-value=6.9e-15 Score=119.14 Aligned_cols=141 Identities=18% Similarity=0.124 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHh
Q psy3615 41 VQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLV 120 (211)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~ 120 (211)
+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++.... ++.+.+++..++.|++.+..++......
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~~ 327 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA--PSPWMALIGAALTGFGFSLVFPALGVEA 327 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666778888899999999999999999999998888888877776665 6777778889999999998888888888
Q ss_pred hhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615 121 AHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYD 183 (211)
Q Consensus 121 ~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~ 183 (211)
.|..|+++|+++.+ .+....+|..+++++.+.+.++.||+..|++.+.+.++..++..+..++
T Consensus 328 ~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 328 VKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 89999999999999 7788999999999999999999999999999888777766665554333
No 93
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.63 E-value=6.3e-15 Score=120.29 Aligned_cols=146 Identities=9% Similarity=0.114 Sum_probs=125.1
Q ss_pred cCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHH
Q psy3615 36 HWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPS 115 (211)
Q Consensus 36 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 115 (211)
+.+..+.+.+.++..++..++.++.|++.||+|+|+.+..+.++.++..++..+. ++.+.+++.+++.|++.+...+.
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA--TGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHH
Confidence 5566678899999999999999999999999999999999999988888877776 78888888999999988888888
Q ss_pred HHHHhhhccCCCchhhHhh--hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615 116 MHHLVAHWIPPTERSQFIT--SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYD 183 (211)
Q Consensus 116 ~~~~~~~~~~~~~r~~~~~--~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~ 183 (211)
...++.+.+|++.|++..+ .+....+|..+++++.|++.+..||+..|...+++.++..++.++..++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8899999999998888766 3467889999999999999999999999999888877766666554543
No 94
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.63 E-value=6.1e-15 Score=122.65 Aligned_cols=155 Identities=14% Similarity=0.093 Sum_probs=122.4
Q ss_pred cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh-----CCcch-hHHHHHHHHHHHHHhhhhh-cccHHHHHH
Q psy3615 28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL-----GTKVV-FGVSNLAMFLISFALPAAA-YWDYKAMAG 100 (211)
Q Consensus 28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----G~r~~-~~~~~~~~~i~~~~~~~~~-~~~~~~~~~ 100 (211)
.|...++.|.|..+++.. +.....+ ++.+++|+++||+ |||+. +..+.+..+++..++++.. .++++.+.+
T Consensus 35 l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~ 112 (491)
T PRK11010 35 LQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAA 112 (491)
T ss_pred HHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 344456678888888886 3333333 6889999999999 99986 5577666766666665531 246788888
Q ss_pred HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc-ccCchHHHHHHHHHHHHHHHHHH
Q psy3615 101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID-TLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
.+++.+++.+...+...++..|++|+++|+++.+ ...+..+|..+++.+..++.+ ..|||..|++.+...++..+..+
T Consensus 113 ~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 113 LAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 779999999999999999988 57999999998887766655444
Q ss_pred hhhcCCC
Q psy3615 179 IVVYDTP 185 (211)
Q Consensus 179 ~~~~~~~ 185 (211)
+ .||++
T Consensus 193 ~-~~e~~ 198 (491)
T PRK11010 193 L-APEPT 198 (491)
T ss_pred h-cCCCc
Confidence 3 56654
No 95
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.62 E-value=3.2e-15 Score=121.84 Aligned_cols=156 Identities=13% Similarity=0.012 Sum_probs=130.3
Q ss_pred cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615 28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGV 107 (211)
Q Consensus 28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~ 107 (211)
+...++.+|.++.+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+. ++.+...+..++.|+
T Consensus 247 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~ 324 (417)
T PRK10489 247 PALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM--PMWILAVLCLALFGY 324 (417)
T ss_pred HHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHH
Confidence 334455589999999999999999999999999999999888888888888777777666555 667777788888999
Q ss_pred hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615 108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTP 185 (211)
Q Consensus 108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (211)
+.+...+...+++.+..|++.|+++++ .+....+|..+++.+.+++.+..|++..++..+++.++..++.....++.+
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 325 LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 888777788889999999999999999 778889999999999999999999998888888777776666655555543
No 96
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.62 E-value=4.9e-15 Score=122.58 Aligned_cols=154 Identities=8% Similarity=-0.079 Sum_probs=115.2
Q ss_pred cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Q psy3615 26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQ 105 (211)
Q Consensus 26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 105 (211)
..+.++++++|+|..+.++..+...++..++.+++|+++||+|+|+.+........+......+...++.....+.+++.
T Consensus 280 ~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (467)
T PRK09556 280 WSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFAL 359 (467)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34556778899999999999999999999999999999999999988776554444433222222224555666777888
Q ss_pred HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchh-hhhhhhhhhhhhhc------------ccCchHHHHHHHHHHH
Q psy3615 106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSF-GVALSYPLCGVVID------------TLGWEAAFYVTGALGV 171 (211)
Q Consensus 106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~-g~~~~~~~~~~l~~------------~~gw~~~~~~~~~~~~ 171 (211)
|+..............|.+|+++||++.| .....++ |..++|.+.|++.+ ..+|+..|++..+..+
T Consensus 360 G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~ 439 (467)
T PRK09556 360 GFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAI 439 (467)
T ss_pred HHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHH
Confidence 86543333333466779999999999999 7777675 77999999999999 5789999998877777
Q ss_pred HHHHHHHh
Q psy3615 172 VWWVVWMI 179 (211)
Q Consensus 172 ~~~~~~~~ 179 (211)
+..+..++
T Consensus 440 ~~~~~~~~ 447 (467)
T PRK09556 440 GCICLMAI 447 (467)
T ss_pred HHHHHHHH
Confidence 66555443
No 97
>KOG2504|consensus
Probab=99.61 E-value=2.9e-15 Score=124.22 Aligned_cols=154 Identities=14% Similarity=0.128 Sum_probs=139.0
Q ss_pred cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHH-HHHH
Q psy3615 26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAG-LRIV 104 (211)
Q Consensus 26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~l 104 (211)
...+.++++++-+.++.+|+.++......+..++.+.+.||+|.|.+.+.|.++.+++.++..++ ++.|.+++ ..++
T Consensus 67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~--~~i~~l~lt~gvi 144 (509)
T KOG2504|consen 67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA--TSLWQLYLTFGVI 144 (509)
T ss_pred hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999998 88877665 5788
Q ss_pred HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhc
Q psy3615 105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVY 182 (211)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~ 182 (211)
.|+|.|..+.....++..+|+ ++|+.++| ...+..+|.++-|++..++.+..|||+.+++.+.+.+-.++......|
T Consensus 145 ~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 145 GGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred hhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 899999999999999999997 56999999 779999999999999999999999999999999888777666666565
No 98
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.61 E-value=1.1e-14 Score=125.36 Aligned_cols=140 Identities=16% Similarity=0.078 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhh
Q psy3615 42 QNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVA 121 (211)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~ 121 (211)
......+..++.+++.++.|+++||+|||++++++.++.+++.++..+. ++...+++.+++.|++.+..++....+++
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~--~s~~~ll~~~~l~g~~~~~~~~~~~a~~a 674 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG--NSESAMIALLCLFGGLSIAAWNALDVLTV 674 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778999999999999999999999999999999998888777 66777788888889888888899999999
Q ss_pred hccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615 122 HWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTP 185 (211)
Q Consensus 122 ~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (211)
|++|+++|++++| .+....+|.+++|.+++.+.+. +...+|++.+++.++..++.. .+||+.
T Consensus 675 El~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~ 737 (742)
T TIGR01299 675 ELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTR 737 (742)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCc
Confidence 9999999999999 8899999999999999988764 456677777777666555554 357654
No 99
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.61 E-value=2.3e-15 Score=122.91 Aligned_cols=159 Identities=9% Similarity=-0.023 Sum_probs=107.5
Q ss_pred ccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh-hhcc-----cHH
Q psy3615 23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA-AAYW-----DYK 96 (211)
Q Consensus 23 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~-~~~~-----~~~ 96 (211)
..+..+.++++++|+|+.+.|++.+.+.++..+++++.|+++||+|||++++++..+.++....... ...+ ...
T Consensus 29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (420)
T PRK09528 29 WFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILL 108 (420)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677889999999999999999999999999999999999999998876665544332111 1001 011
Q ss_pred HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHH
Q psy3615 97 AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWV 175 (211)
Q Consensus 97 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~ 175 (211)
...+.++..|.+.....+....+..+ . .+++++.++ .....++|..++|++++.+.+ .+|+..|++.++..++..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~ 185 (420)
T PRK09528 109 GAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLV 185 (420)
T ss_pred HHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHH
Confidence 12223333443333333333333322 2 235677788 778889999999999998877 4899999988877776665
Q ss_pred HHHhhhcCC
Q psy3615 176 VWMIVVYDT 184 (211)
Q Consensus 176 ~~~~~~~~~ 184 (211)
+.++..+|+
T Consensus 186 ~~~~~~~~~ 194 (420)
T PRK09528 186 LLFFAKPDA 194 (420)
T ss_pred HHhcccccc
Confidence 555544443
No 100
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.61 E-value=7.5e-15 Score=115.41 Aligned_cols=157 Identities=15% Similarity=0.068 Sum_probs=136.7
Q ss_pred ccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh-hhcccHHHHHHH
Q psy3615 23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA-AAYWDYKAMAGL 101 (211)
Q Consensus 23 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 101 (211)
...++.|++++.++++..+.+.+...++.++.+.+++.|++.+|+|+|+.++.|+.++++++.++.- +...++..++++
T Consensus 31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~ 110 (422)
T COG0738 31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVA 110 (422)
T ss_pred cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 4456778899999999999999999999999999999999999999999999999999999888742 223678899999
Q ss_pred HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-------------------cCchH
Q psy3615 102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-------------------LGWEA 161 (211)
Q Consensus 102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-------------------~gw~~ 161 (211)
-++.|.|.+...+..+.++....++++..+.++ .+.++.+|..++|+++++++.+ ..|++
T Consensus 111 lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~ 190 (422)
T COG0738 111 LFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQF 190 (422)
T ss_pred HHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999988888889 8899999999999999988772 24778
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy3615 162 AFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~ 179 (211)
+|...+....+..+....
T Consensus 191 pYl~~~~~lvll~v~~~~ 208 (422)
T COG0738 191 PYLILAGLLVLLAVLILL 208 (422)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 888877776665554433
No 101
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.60 E-value=8e-15 Score=117.11 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=120.6
Q ss_pred CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhh
Q psy3615 31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGG 110 (211)
Q Consensus 31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g 110 (211)
+.+++|.++.+.+.+.+...++..+++++.|++.||+|||+.+.++..+.+++.++..+....+...+....++.|++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 310 (377)
T TIGR00890 231 YGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWG 310 (377)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc
Confidence 34668888888999999999999999999999999999999999998888888776665522223334556778888888
Q ss_pred cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHH
Q psy3615 111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVW 173 (211)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~ 173 (211)
...+....++.|.+|+++|++..+ .+....+|..++|.+.+.+.++.||++.|++.+++.++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 311 GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 888888889999999999999999 778899999999999999999999999998887766554
No 102
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.60 E-value=1.2e-14 Score=117.61 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=119.7
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQG 106 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G 106 (211)
.+.++++++|+++.+.+++.+...++..++.++.|+++||+|+|+.+..+.....+........ ++.+.+++.+++.+
T Consensus 239 ~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~ 316 (393)
T PRK15011 239 MPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA--HSPAILLGLQLLNA 316 (393)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHH
Confidence 3345567889999999998888888888899999999999999998887766655554444334 56777778888888
Q ss_pred hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615 107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
++.+...+....+..|.+|+ +|+++++ .+...++|..+++.+++.+.++.||+..|++...+.++..+..++
T Consensus 317 ~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 317 IYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 87777777777888898885 5999999 667789999999999999999999999998877777666555543
No 103
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.59 E-value=5.9e-15 Score=122.79 Aligned_cols=146 Identities=17% Similarity=0.071 Sum_probs=112.3
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQG 106 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G 106 (211)
.+.++++++|.+..+.+++.+...++..++.++.|++.||+|+|+++..+..+..+..++.......+.+.+.+..++.+
T Consensus 298 lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (496)
T PRK03893 298 LPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQ 377 (496)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 34455578999999999999999999999999999999999999998888776666554443332233344444445444
Q ss_pred hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHH
Q psy3615 107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVV 172 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~ 172 (211)
.......+....++.+.+|+++|++.++ .+....+|..++|.+.+.+.++.||+..+...+....+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 378 MLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 4333345667788999999999999999 77888999999999999999999999887665544333
No 104
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.59 E-value=1.3e-14 Score=114.75 Aligned_cols=146 Identities=22% Similarity=0.256 Sum_probs=132.3
Q ss_pred CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcc-hhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhh
Q psy3615 31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKV-VFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIG 109 (211)
Q Consensus 31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~ 109 (211)
..+.+|.++.+.++..+...++..++.++.+++.||+|+|+ .+..+..+..++.+..... ++.+...+..++.|++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~g~~~ 279 (352)
T cd06174 202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA--PSLALLLVALLLLGFGL 279 (352)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHH
Confidence 34445889999999999999999999999999999999999 9999999999988888776 67888889999999999
Q ss_pred hcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 110 GLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 110 g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
+...+....++.|..|+++|++.++ .....++|..+++.+.+.+.+..+|+..+++.+.+.++..++..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 280 GFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred hccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999999999 78999999999999999999989999999998888877666543
No 105
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.58 E-value=3.8e-14 Score=115.06 Aligned_cols=147 Identities=14% Similarity=-0.022 Sum_probs=118.5
Q ss_pred CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhh
Q psy3615 31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGG 110 (211)
Q Consensus 31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g 110 (211)
+.++.|.++.+.+.+.+...++..++.++.|++.||+|+|+.+..+.+...++.+..... ++.+.+.+..++.|++.+
T Consensus 246 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~ 323 (406)
T PRK11551 246 LLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA--PSFAGMLLAGFAAGLFVV 323 (406)
T ss_pred HHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHH
Confidence 445679999999999999999999999999999999999999888777666666655555 566777777888888887
Q ss_pred cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHHh
Q psy3615 111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~ 179 (211)
...+...++..|.+|+++|++.++ .+....+|..++|.+.+.+.++.+ |...++......++..+..+.
T Consensus 324 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 324 GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 788888999999999999999999 778899999999999999988754 555555555444444444433
No 106
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.58 E-value=4.8e-14 Score=114.36 Aligned_cols=139 Identities=12% Similarity=0.085 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhh
Q psy3615 42 QNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVA 121 (211)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~ 121 (211)
.+.+.++..++..++.+..|++.||+|||+.+..+..+..++.+...+. ++.+.+++.+++.|++.+...+...+.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 337 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV--QTPLQLGILRFLLGAADGALLPAVQTLLV 337 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence 3555666778888899999999999999999999888877776666555 67788888999999999999999999999
Q ss_pred hccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhc
Q psy3615 122 HWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVY 182 (211)
Q Consensus 122 ~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~ 182 (211)
+..|+++|++.++ ......+|..++|.+++.+.+..||++.|++.+++.++..++.++..+
T Consensus 338 ~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 338 YNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred HhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 778899999999999999999999999999998888877766655443
No 107
>PRK12382 putative transporter; Provisional
Probab=99.57 E-value=6.1e-14 Score=113.42 Aligned_cols=143 Identities=17% Similarity=0.142 Sum_probs=121.3
Q ss_pred cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcch
Q psy3615 34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAW 113 (211)
Q Consensus 34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 113 (211)
+.|.+ +.+.....+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+. ++.+.+++..++.|++.+...
T Consensus 245 ~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~ 320 (392)
T PRK12382 245 SKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA--PTAWVALAGAALTGAGCSLIF 320 (392)
T ss_pred hcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhHH
Confidence 34444 34566677788888999999999999999999999998888887776665 677777888999999998888
Q ss_pred HHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615 114 PSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIV 180 (211)
Q Consensus 114 ~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~ 180 (211)
+.....+.+.+|+++|+++.+ .+....+|..++|.+.+++.++.||+..|.+.+.+.++..++.++.
T Consensus 321 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 321 PALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 888889999999999999999 7788999999999999999999999999999888877766665543
No 108
>KOG0253|consensus
Probab=99.57 E-value=1.2e-14 Score=113.16 Aligned_cols=159 Identities=14% Similarity=0.169 Sum_probs=137.2
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIV 104 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l 104 (211)
+.+.|.+.+.++.+..+..++......++.+++..+|.++|++|||+......+..++...+.... +|+..+.+.|.+
T Consensus 98 s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s--pnf~~L~~f~~l 175 (528)
T KOG0253|consen 98 SLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS--PNFASLCVFRAL 175 (528)
T ss_pred HHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC--CCeehhhHHHHH
Confidence 345566778888888899999999999999999999999999999999999999999988888777 999999999999
Q ss_pred HHhhhhcchHHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCC
Q psy3615 105 QGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDT 184 (211)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (211)
.|+|.|. .|...++-.|..|..+|...+-....+.+|.++...+.-....++||||.+........+ +...+++.||+
T Consensus 176 ~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~-~a~f~~w~~ES 253 (528)
T KOG0253|consen 176 WGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMSFFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMF-AARFLVWVYES 253 (528)
T ss_pred HhccCCC-ccHhHHHHHHhccCcCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH-HHHHHhhcccC
Confidence 9999998 888999999999999999888723889999999999998888899999988887744444 34445668898
Q ss_pred CCC
Q psy3615 185 PDQ 187 (211)
Q Consensus 185 ~~~ 187 (211)
|+.
T Consensus 254 pRf 256 (528)
T KOG0253|consen 254 PRF 256 (528)
T ss_pred cch
Confidence 874
No 109
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.56 E-value=6.8e-14 Score=114.24 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=110.7
Q ss_pred cccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCC-cchhHHHHHHHHHHHHHhhhhhcccHHHHHHHH
Q psy3615 24 LFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGT-KVVFGVSNLAMFLISFALPAAAYWDYKAMAGLR 102 (211)
Q Consensus 24 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~-r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 102 (211)
++++.+++++++|++..+.|++.+.+.++..++++++|.++||+|+ |+++.++.++.++...+..+. ++++.+.+.+
T Consensus 22 ~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 99 (418)
T TIGR00889 22 LVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV--TTPAGMFPVL 99 (418)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHH
Confidence 3667778888999999999999999999999999999999999965 778888888887777777666 7889999999
Q ss_pred HHHHhhhhcchHHHHHHhhhccC--------CCchhhHhhhhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHH
Q psy3615 103 IVQGVIGGLAWPSMHHLVAHWIP--------PTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWW 174 (211)
Q Consensus 103 ~l~G~~~g~~~~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~ 174 (211)
++.|++.+...+...++...... ...|.+. ...+|..++|.+++.+.....|+ +|++.++..++..
T Consensus 100 ~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~-----~G~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~ 173 (418)
T TIGR00889 100 LANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRV-----MGTIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG 173 (418)
T ss_pred HHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeee-----ehhHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH
Confidence 99999877766666555432221 1123332 23468888888888774332344 4556566555544
Q ss_pred HHHHhhhcCCC
Q psy3615 175 VVWMIVVYDTP 185 (211)
Q Consensus 175 ~~~~~~~~~~~ 185 (211)
++ .+..||.|
T Consensus 174 ~~-~~~~~e~~ 183 (418)
T TIGR00889 174 VF-ALTLPDIP 183 (418)
T ss_pred HH-HhcCCCCC
Confidence 44 34566654
No 110
>KOG0252|consensus
Probab=99.56 E-value=1.6e-14 Score=115.06 Aligned_cols=150 Identities=18% Similarity=0.192 Sum_probs=118.9
Q ss_pred cCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhccc-----HHHHHHHHHHHHhhhh
Q psy3615 36 HWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD-----YKAMAGLRIVQGVIGG 110 (211)
Q Consensus 36 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~l~G~~~g 110 (211)
|+++...+.+..+..+|.+++|++.|++.||+|||+++...+++..++++++++...++ .+++.+.|+++|+|.|
T Consensus 80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIG 159 (538)
T KOG0252|consen 80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIG 159 (538)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcccc
Confidence 35566788999999999999999999999999999999999999999998776653222 5677889999999999
Q ss_pred cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc---------------cCchHHHHHHHHHHHHHH
Q psy3615 111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT---------------LGWEAAFYVTGALGVVWW 174 (211)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~---------------~gw~~~~~~~~~~~~~~~ 174 (211)
.-+|...++.+|...++.||...+ +...+.+|...|.+++-.+..- .-||..+.+.++..+.+
T Consensus 160 GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~- 238 (538)
T KOG0252|consen 160 GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV- 238 (538)
T ss_pred CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999 8888888888777776544311 12887776654444433
Q ss_pred HHHHhhhcCCCC
Q psy3615 175 VVWMIVVYDTPD 186 (211)
Q Consensus 175 ~~~~~~~~~~~~ 186 (211)
+...+.+||+++
T Consensus 239 ly~Rl~M~Et~~ 250 (538)
T KOG0252|consen 239 LYFRLKMPETAR 250 (538)
T ss_pred HHhhhcCCcchh
Confidence 333445677654
No 111
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.55 E-value=1.3e-14 Score=118.72 Aligned_cols=164 Identities=15% Similarity=0.073 Sum_probs=124.6
Q ss_pred cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH----hCCcc-hhHHHHHHHHHHHHHhhhhhcc---
Q psy3615 22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS----LGTKV-VFGVSNLAMFLISFALPAAAYW--- 93 (211)
Q Consensus 22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~G~r~-~~~~~~~~~~i~~~~~~~~~~~--- 93 (211)
....++.+++.+++|+++.+.|.+.++..+..++..++.|+++|| +|||| .++.+....+++.+++......
T Consensus 17 ~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~ 96 (437)
T TIGR00792 17 IVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSAT 96 (437)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcc
Confidence 334556777888999999999999999999999999999999998 67744 5667777888777766554211
Q ss_pred -cHHHHHHHHHHHHhhhhcchHHHHHHhhhcc-CCCchhhHhh-hhhcchhhhhhhhhhhhhhh-------cccCchHHH
Q psy3615 94 -DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWI-PPTERSQFIT-SYLGSSFGVALSYPLCGVVI-------DTLGWEAAF 163 (211)
Q Consensus 94 -~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~-------~~~gw~~~~ 163 (211)
....+.+.+++.+++.+...+...++..|.. ++++|++..+ ...+..+|..++..+.+.+. +..+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~ 176 (437)
T TIGR00792 97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFA 176 (437)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHH
Confidence 1455667788888888887777788888887 4678999988 66777777766655554443 246899999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCC
Q psy3615 164 YVTGALGVVWWVVWMIVVYDTP 185 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~ 185 (211)
.+.+++.++..++.++..+|++
T Consensus 177 ~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 177 LVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHHHHHHHHcCCEecC
Confidence 9988888777766666666654
No 112
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.55 E-value=5.9e-14 Score=112.50 Aligned_cols=148 Identities=13% Similarity=0.118 Sum_probs=120.8
Q ss_pred cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615 28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGV 107 (211)
Q Consensus 28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~ 107 (211)
+..+.+++|.++.+.+++.+...+...++.++.|++.||+|+|+++.++.+...+........ ++.+.+++.+++.|+
T Consensus 223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~ 300 (375)
T TIGR00899 223 PLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD--NSLWALLMLQLLNAI 300 (375)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 334567789999999998888877788889999999999999999988777666555444444 567777788889999
Q ss_pred hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
+.+...+....+..|..|+ +++++++ .+...++|..++|.+.+.+.+..||+..|++.+++.++..++..
T Consensus 301 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 301 FIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 8888888888888998875 5678889 77888899999999999999999999999988877766655543
No 113
>PRK03545 putative arabinose transporter; Provisional
Probab=99.55 E-value=7.5e-14 Score=112.87 Aligned_cols=151 Identities=17% Similarity=0.037 Sum_probs=120.9
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHh-hhhhcccHHHHHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFAL-PAAAYWDYKAMAGLRIVQ 105 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~l~ 105 (211)
.++.+.+++|.+..+.+++.+...++..+++++.|++.||+++|+. ..+..+..++.... ... ++.+.+++..++.
T Consensus 228 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~ 304 (390)
T PRK03545 228 IEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPAA--NSEWHLSVLSIFW 304 (390)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHHh--chHHHHHHHHHHH
Confidence 4455666789999999999999999999999999999999998765 44444444443332 233 5677778888899
Q ss_pred HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhh
Q psy3615 106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVV 181 (211)
Q Consensus 106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~ 181 (211)
|++.+...+.....+.+..| ++|+++++ ......+|..+||.++|.+.++.|++..|+..+.+.++..+......
T Consensus 305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 99887777777888888876 68999999 77888999999999999999999999999999888877766665544
No 114
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.54 E-value=3.2e-14 Score=117.02 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=119.7
Q ss_pred cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh---hhcc------cHHHH
Q psy3615 28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA---AAYW------DYKAM 98 (211)
Q Consensus 28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~---~~~~------~~~~~ 98 (211)
.+.+.+++|.+..+.++......++..++.++.|++.||+|||+.+.++.++.+++.++..+ ...+ +...+
T Consensus 307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (481)
T TIGR00879 307 SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAI 386 (481)
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHH
Confidence 34556778888888889999999999999999999999999999999988887777666552 1111 22222
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615 99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW 177 (211)
Q Consensus 99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~ 177 (211)
....+..+.......+....++.|.+|+++|+++++ .+...++|..++|.+.+.+.++.+|++.|++.+.++++..++.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~ 466 (481)
T TIGR00879 387 VFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFV 466 (481)
T ss_pred HHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHH
Confidence 222222222222234666777899999999999999 8899999999999999999998899999999888888877776
Q ss_pred HhhhcCC
Q psy3615 178 MIVVYDT 184 (211)
Q Consensus 178 ~~~~~~~ 184 (211)
.+..||.
T Consensus 467 ~~~~~~~ 473 (481)
T TIGR00879 467 YFFLPET 473 (481)
T ss_pred heecccC
Confidence 6656654
No 115
>PRK03699 putative transporter; Provisional
Probab=99.53 E-value=6.6e-14 Score=113.39 Aligned_cols=151 Identities=10% Similarity=0.111 Sum_probs=122.4
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIV 104 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l 104 (211)
...++++++++|+|..+.+.+.+.+.++..++.++.|++.||+++|+.+.....+..+...+.... ++.+.+.+..++
T Consensus 226 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 303 (394)
T PRK03699 226 SWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT--DDPSHLLYAILG 303 (394)
T ss_pred HHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHH
Confidence 345556667889999999999999999999999999999999999999988777766665555444 566666677788
Q ss_pred HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
.|++.+..++...+...+..| +++++..+ ......+|..++|.+.+++.+..|++..+++.+++.++..+...
T Consensus 304 ~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 304 LGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence 898888788887888888776 44677788 77788899999999999999999999999988877766655433
No 116
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.52 E-value=1.7e-14 Score=118.96 Aligned_cols=142 Identities=17% Similarity=0.146 Sum_probs=115.2
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh--CCcchhHHH--HHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615 32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL--GTKVVFGVS--NLAMFLISFALPAAAYWDYKAMAGLRIVQGV 107 (211)
Q Consensus 32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--G~r~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~ 107 (211)
.+++|++..+.+++.++..++..+++++.|++.||. ++|+...++ ....++..+++... ++++.+++.+++.|+
T Consensus 268 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~~~i~~~~~G~ 345 (455)
T TIGR00892 268 AKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA--GDYTGLVIYCIFFGL 345 (455)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999974 344433333 33333444444444 678888889999999
Q ss_pred hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc-CchHHHHHHHHHHHHHHH
Q psy3615 108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL-GWEAAFYVTGALGVVWWV 175 (211)
Q Consensus 108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~-gw~~~~~~~~~~~~~~~~ 175 (211)
+.+...+...+++.|.+|++++++.++ .+...++|..++|.+++.+.+.. +|++.|++.+++.++..+
T Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 346 SFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999999999999999999999999 87889999999999999999877 499999988877665544
No 117
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.51 E-value=9.9e-14 Score=115.58 Aligned_cols=147 Identities=13% Similarity=0.124 Sum_probs=123.5
Q ss_pred CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh---hcccHHHHHHHHHHHH
Q psy3615 30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA---AYWDYKAMAGLRIVQG 106 (211)
Q Consensus 30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~G 106 (211)
.+..+..-|+...+.+.+...+-.++.++++|.++||++||++++.+-++.++......+. ...+.+.+++..++.|
T Consensus 35 wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g 114 (524)
T PF05977_consen 35 WLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLG 114 (524)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 3344555578889999999999999999999999999999999999988876654443322 2236788899999999
Q ss_pred hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615 107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV 176 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~ 176 (211)
++.+...|+.++++.+..|+++..++++ .....++...+||.++|.+....|-.+.|.+.++..++..+.
T Consensus 115 ~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~ 185 (524)
T PF05977_consen 115 IGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILA 185 (524)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 778899999999999999999888888898877665554433
No 118
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.51 E-value=3.3e-13 Score=108.88 Aligned_cols=142 Identities=15% Similarity=0.140 Sum_probs=115.6
Q ss_pred CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhh
Q psy3615 31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGG 110 (211)
Q Consensus 31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g 110 (211)
+.++.|.++.+.+...+...++..+++++.|++.||+|+|+++..+..+.+++..... + ........++.|++..
T Consensus 226 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~----~-~~~~~~~~~l~g~~~~ 300 (381)
T PRK03633 226 YLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML----S-QAAMAPALFILGAAGF 300 (381)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh----h-hHHHHHHHHHHHHHHH
Confidence 3455788988999999999999999999999999999999999888877777655432 1 1233456677787777
Q ss_pred cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615 111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW 177 (211)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~ 177 (211)
...|.....+.|..|+++++...+ .....++|..++|.++|++.++.+|++.|.+.+.+.++..+..
T Consensus 301 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 301 TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 778999999999999888887777 6688899999999999999999999999998877776654444
No 119
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.50 E-value=1.1e-13 Score=114.62 Aligned_cols=156 Identities=12% Similarity=0.028 Sum_probs=113.9
Q ss_pred CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhccc-HH-HHHHHHHHHH
Q psy3615 29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD-YK-AMAGLRIVQG 106 (211)
Q Consensus 29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~-~~-~~~~~~~l~G 106 (211)
|.+.++.|.+.....+......+...++.++.+++.||+|||++++.+..+.+++.+++.....++ .+ ......++.+
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 374 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 445567788877777777778888999999999999999999999999999888877665432112 11 2223334444
Q ss_pred hhhhc-chHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhh------hhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 107 VIGGL-AWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCG------VVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 107 ~~~g~-~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~------~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
.+.+. ..+....+++|.+|+++|+++++ .+....+|..+++.+.+ ++.+..+|++.|++.+.++++..++.+
T Consensus 375 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (479)
T PRK10077 375 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 454 (479)
T ss_pred HHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHH
Confidence 44443 33677899999999999999999 77888888877755544 444678899899988877777766665
Q ss_pred hhhcCC
Q psy3615 179 IVVYDT 184 (211)
Q Consensus 179 ~~~~~~ 184 (211)
++.||+
T Consensus 455 ~~~~e~ 460 (479)
T PRK10077 455 KFVPET 460 (479)
T ss_pred hccccC
Confidence 556654
No 120
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.49 E-value=1.6e-13 Score=110.23 Aligned_cols=144 Identities=18% Similarity=0.182 Sum_probs=112.8
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHH-H-HhhhhhcccHHHHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLIS-F-ALPAAAYWDYKAMAGLRIV 104 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~-~-~~~~~~~~~~~~~~~~~~l 104 (211)
.+..+++++|.++.+.+...+...++..++.++.|++.||+|||+.+.....+..+.. . ...+...++.+.+....++
T Consensus 242 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (394)
T TIGR00883 242 LPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLG 321 (394)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 3444557788999999999999999999999999999999999998775555444333 1 2222212456666777888
Q ss_pred HHhhhhcchHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHH
Q psy3615 105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALG 170 (211)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~ 170 (211)
.|++.+...+...+++.|.+|+++|+++.+ .+ ....+|..++|.+++++.++.| |+..++...+..
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 322 LALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred HHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 898888888999999999999999999999 55 5567888899999999999888 887766655443
No 121
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.48 E-value=4.3e-13 Score=110.02 Aligned_cols=154 Identities=14% Similarity=0.010 Sum_probs=106.2
Q ss_pred cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh--CCcchh-HHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Q psy3615 28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL--GTKVVF-GVSNLAMFLISFALPAAAYWDYKAMAGLRIV 104 (211)
Q Consensus 28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--G~r~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l 104 (211)
++.+.+++|++..+.+...+.+.++..++.++.|+++||+ ++|+.. ....+...+...........+.....+..+.
T Consensus 267 p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (434)
T PRK11663 267 NLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFT 346 (434)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 3445577899999999999999999999999999999999 333332 2211111111111111111233333344444
Q ss_pred HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhh
Q psy3615 105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVV 181 (211)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~ 181 (211)
.|++.............|.+|+++|+++++ .+....+|..++|++.+++.++.||+..|+..+++.++..+..+...
T Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 347 IGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred HHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 554332222333456789999999999999 88999999999999999999999999999998888777766555444
No 122
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.48 E-value=1.5e-13 Score=111.09 Aligned_cols=138 Identities=14% Similarity=0.059 Sum_probs=111.7
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQG 106 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G 106 (211)
.++.+.+++|++..+.+++.+...++..++.++.|++.||+|||+.+..+..+.++........ .++.+.+.+..++.|
T Consensus 261 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 339 (405)
T TIGR00891 261 LPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI-GANVAVLGLGLFFQQ 339 (405)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHH
Confidence 4445567789999999999999999999999999999999999999988877654433322111 245566666667777
Q ss_pred hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHH
Q psy3615 107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYV 165 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~ 165 (211)
+..+...+....++.|.+|+++|+++++ .+....+|..++|++.+.+.++.| |+..+..
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 7777777788889999999999999999 778889999999999999999988 8766654
No 123
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.47 E-value=3.2e-13 Score=109.06 Aligned_cols=147 Identities=19% Similarity=0.259 Sum_probs=127.8
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh-CCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615 33 SLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL-GTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL 111 (211)
Q Consensus 33 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 111 (211)
+.+|+|+++..-+.+.|..-.-+...++||++||+ |+|+++..|.++..++.++.+.....+...++++-.+.++|.|.
T Consensus 54 ~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl 133 (498)
T COG3104 54 DGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGL 133 (498)
T ss_pred ccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccc
Confidence 33669999998888888888889999999999995 99999999999999999988776212577888888888899999
Q ss_pred chHHHHHHhhhccCCC--chhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615 112 AWPSMHHLVAHWIPPT--ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 112 ~~~~~~~~~~~~~~~~--~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
.-+...+++.|.+|++ +|....+ .|++.++|+.++|.+.+++.++.||+..|...+.-....++..++
T Consensus 134 ~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 134 FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 5777788 889999999999999999999999999999988777776665554
No 124
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.47 E-value=3.4e-13 Score=111.23 Aligned_cols=154 Identities=10% Similarity=0.064 Sum_probs=105.2
Q ss_pred cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh--CCcchhH-HHHHHHHHHHHHhhhhhcccHHHHHHHH
Q psy3615 26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL--GTKVVFG-VSNLAMFLISFALPAAAYWDYKAMAGLR 102 (211)
Q Consensus 26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--G~r~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 102 (211)
..+.+++++.|++..+.++....+.++..++.++.|+++||+ +||+... ....+..++.+...+....+.+..++..
T Consensus 275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 354 (452)
T PRK11273 275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACM 354 (452)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 345556677889988999999999999999999999999999 4554332 2222233333222222113344444455
Q ss_pred HHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhh-hhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615 103 IVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVA-LSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 103 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~-~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
++.|.+..........+..|.+|+++||++.+ .+....+|.. .+|.+.+.+.++.||+..|++.+..+++..+....
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 355 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred HHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 55555433223333456779999999999999 7666677755 57999999999999999999888877776555443
No 125
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.47 E-value=4e-13 Score=108.88 Aligned_cols=155 Identities=10% Similarity=-0.036 Sum_probs=118.0
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQG 106 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G 106 (211)
.++.++ ++|.+..+.+...+.+.++..++++..|++.||+|+|+.+..+..+..++..+..... ++.... .-++.|
T Consensus 228 lp~~l~-~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~--~~~l~g 303 (393)
T PRK09705 228 LPAFYI-EIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP-LQLPVL--WAMVCG 303 (393)
T ss_pred HHHHHH-HcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc-chHHHH--HHHHHH
Confidence 444444 5799999999999999999999999999999999999999888877777665543331 222222 234568
Q ss_pred hhhhcchHHHHHHhhhccC-CCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615 107 VIGGLAWPSMHHLVAHWIP-PTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWMIVVYD 183 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~-~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~~ 183 (211)
++.+...+.......+..+ +++|++..+ .+....++..++|.+.+++.+..| |...|++....+++..+......||
T Consensus 304 ~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 304 LGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888777877777777775 578999999 888889999999999999999876 7777777776666665555555555
Q ss_pred CC
Q psy3615 184 TP 185 (211)
Q Consensus 184 ~~ 185 (211)
++
T Consensus 384 ~~ 385 (393)
T PRK09705 384 RF 385 (393)
T ss_pred cc
Confidence 43
No 126
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.47 E-value=1.1e-12 Score=105.88 Aligned_cols=144 Identities=13% Similarity=0.035 Sum_probs=125.8
Q ss_pred cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615 28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGV 107 (211)
Q Consensus 28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~ 107 (211)
++.+ +++|.++.+.|...+...++..+..++.+++.||+|+|+.+.++.+..++...+..+. ++.+.+++.+++.|+
T Consensus 229 ~~~l-~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~q~l~g~ 305 (382)
T TIGR00902 229 AIYW-QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI--EAFPLIFLLQILHCG 305 (382)
T ss_pred HHHH-HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH--hhHHHHHHHHHHHHH
Confidence 3344 5689999999999999999999999999999999999999999999999998888777 888999999999999
Q ss_pred hhhcchHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615 108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV 176 (211)
Q Consensus 108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~ 176 (211)
..+...+....++.+. |+++|++..+ .+ ....+|..+++.++|++.++.|+ ..|+..+.+.++..++
T Consensus 306 ~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 306 TFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 9999999999999998 8889999899 54 56789999999999999999986 6677777777655433
No 127
>PRK09952 shikimate transporter; Provisional
Probab=99.47 E-value=1e-12 Score=107.99 Aligned_cols=156 Identities=12% Similarity=-0.009 Sum_probs=112.4
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh--hcccHHHHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA--AYWDYKAMAGLRIV 104 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l 104 (211)
.++++++++|.+......+.....+...++.++.|+++||+|||+++..+.++..++...+... ..++.+.+++..++
T Consensus 273 ~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 352 (438)
T PRK09952 273 ALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIML 352 (438)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3445567788887766666666677778888999999999999999988876655544333221 11234444455666
Q ss_pred HHhhhhcchHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhccc--CchHHHHHHHHHHHHHHHHHHhh
Q psy3615 105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDTL--GWEAAFYVTGALGVVWWVVWMIV 180 (211)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~~--gw~~~~~~~~~~~~~~~~~~~~~ 180 (211)
.+++.+...+....++.|.+|++.|+++.+ .+ .+..+|+.++|.+.+++.+.. +|+..+...+...++..+..+.
T Consensus 353 ~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~- 431 (438)
T PRK09952 353 ANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL- 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-
Confidence 788888778888999999999999999999 66 445589999999999998754 4887777776666665555443
Q ss_pred hcC
Q psy3615 181 VYD 183 (211)
Q Consensus 181 ~~~ 183 (211)
.+|
T Consensus 432 ~~~ 434 (438)
T PRK09952 432 MKD 434 (438)
T ss_pred ccc
Confidence 444
No 128
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.45 E-value=8.5e-13 Score=105.83 Aligned_cols=150 Identities=13% Similarity=-0.033 Sum_probs=108.1
Q ss_pred cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhH-HHHHHHHHH----HH-HhhhhhcccHHHHHHH
Q psy3615 28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFG-VSNLAMFLI----SF-ALPAAAYWDYKAMAGL 101 (211)
Q Consensus 28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~-~~~~~~~i~----~~-~~~~~~~~~~~~~~~~ 101 (211)
+..+++++|.++.+.+++.+...++..++.++.|++.||+++|+... .......++ .+ .......++.+..+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (399)
T TIGR00893 239 PTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALAL 318 (399)
T ss_pred HHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 44456778989999999999999999999999999999999996211 111111111 11 1111111233333333
Q ss_pred HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHH
Q psy3615 102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~ 178 (211)
..+.+.+.+ ..+...+++.|.+|+++|+++++ ......+|..++|.+.+.+.+..| |+..|++.+.+.++..+..+
T Consensus 319 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 319 VALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 444444444 78889999999999999999999 778889999999999999999988 99999888877766655543
No 129
>PRK15075 citrate-proton symporter; Provisional
Probab=99.45 E-value=1e-12 Score=107.87 Aligned_cols=134 Identities=14% Similarity=0.107 Sum_probs=98.1
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHH-h-hhhhcccHHHHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFA-L-PAAAYWDYKAMAGLRIV 104 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~-~-~~~~~~~~~~~~~~~~l 104 (211)
.+.++++.+|++..+.++....+.++..++.++.|+++||+|||+++..+..+..+.... . .....++........++
T Consensus 261 ~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (434)
T PRK15075 261 TPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELW 340 (434)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 444455668999889898888899999999999999999999999888765544332211 1 11112334444444566
Q ss_pred HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhh-cchhhhhhhhhhhhhhhcccCch
Q psy3615 105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYL-GSSFGVALSYPLCGVVIDTLGWE 160 (211)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~-~~~~g~~~~~~~~~~l~~~~gw~ 160 (211)
.+++.+...+....++.|.+|+++|+++.+ .+. +..++..++|.+.+++.++.|+.
T Consensus 341 ~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 341 LSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 667777666777788999999999999999 554 44455778999999999988864
No 130
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.44 E-value=3.3e-12 Score=105.51 Aligned_cols=153 Identities=14% Similarity=0.076 Sum_probs=128.6
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCc--chhHHHHHHHHHHHHHhhh------hhcccHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTK--VVFGVSNLAMFLISFALPA------AAYWDYKAM 98 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r--~~~~~~~~~~~i~~~~~~~------~~~~~~~~~ 98 (211)
...+.++++|++..+...+.....+..+++.+++|++.||+|.| +++..++++..+..+...+ ...++.+.+
T Consensus 304 ~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f 383 (477)
T PF11700_consen 304 AGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEF 383 (477)
T ss_pred HHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHH
Confidence 33445678999999999999999999999999999999999999 8888888877555444433 012577889
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHH
Q psy3615 99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVV 176 (211)
Q Consensus 99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~ 176 (211)
.+..++.|+..|..++...++.++..|+++.+...| ..........+||.+.+.+.+..| .|..+....++.++..++
T Consensus 384 ~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~l 463 (477)
T PF11700_consen 384 WVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLIL 463 (477)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 668899999999999999999887 788888777776666665
Q ss_pred HHh
Q psy3615 177 WMI 179 (211)
Q Consensus 177 ~~~ 179 (211)
.++
T Consensus 464 l~~ 466 (477)
T PF11700_consen 464 LFF 466 (477)
T ss_pred Hhh
Confidence 543
No 131
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.43 E-value=8.7e-13 Score=107.73 Aligned_cols=131 Identities=16% Similarity=0.049 Sum_probs=97.4
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615 32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL 111 (211)
Q Consensus 32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 111 (211)
.++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..+.......++...+....+..+.....
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (426)
T PRK12307 258 LAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVG 337 (426)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhccc
Confidence 34568888889999999999999999999999999999999988887776655544333112222222222222222223
Q ss_pred chHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHH
Q psy3615 112 AWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAA 162 (211)
Q Consensus 112 ~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~ 162 (211)
..+..+.++.|.+|+++|++++| .+....+|..++|.+.+++.+..|+...
T Consensus 338 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~ 389 (426)
T PRK12307 338 VGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAA 389 (426)
T ss_pred HhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHH
Confidence 34556678899999999999999 8888899999999999999998886543
No 132
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.43 E-value=2.8e-12 Score=104.22 Aligned_cols=148 Identities=14% Similarity=0.136 Sum_probs=112.7
Q ss_pred CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhH-HHHHHHHHHHHHhhhh---hcccHHHHHHHHHHH
Q psy3615 30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFG-VSNLAMFLISFALPAA---AYWDYKAMAGLRIVQ 105 (211)
Q Consensus 30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~-~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~ 105 (211)
.+.+++|.+..+.+++.+...++..++.+..|+++||+|||+.+. .+.+..++....+... ..++.+..++..++.
T Consensus 247 ~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 326 (402)
T TIGR00897 247 MFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIAL 326 (402)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 344678999999999999999999999999999999999988764 3333333333222221 113566667788888
Q ss_pred HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615 106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
|++.+...+ ....+.+..| ++|+++++ .+....+|..++|.+.+.+.+..||+..+++.+.+.++..++.++
T Consensus 327 G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 327 GIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 888776544 4456667654 68999999 889999999999999999999999999999988887776666554
No 133
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.43 E-value=1.1e-12 Score=109.14 Aligned_cols=154 Identities=12% Similarity=0.091 Sum_probs=117.2
Q ss_pred ccCCCcccccCCchhhHHHHH-HHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh-hh-cccHHHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLG-SFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA-AA-YWDYKAMAGLRI 103 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~-~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~ 103 (211)
..+.+.+++|++..+.+++.. ...++..++.+++|++.||+|+|+.+.++.++.++..+.... .. .++.+.+....+
T Consensus 245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~ 324 (491)
T PRK11010 245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF 324 (491)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 445556678999999999874 556899999999999999999998877766655554332221 11 134444455566
Q ss_pred HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615 104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIV 180 (211)
Q Consensus 104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~ 180 (211)
+..++.|...+...++..+..+++.+++..+ .+....+|..+++++.|++.+..||+..|.+..++.++..++....
T Consensus 325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 6565556666777888899999999999999 7788899999888999999999999999998888888776665543
No 134
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.42 E-value=1.6e-12 Score=107.00 Aligned_cols=153 Identities=11% Similarity=-0.006 Sum_probs=117.3
Q ss_pred CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHH----HhCCcchhHHH-HHHHHHHHHHhhhhhcccH----------
Q psy3615 31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLAR----SLGTKVVFGVS-NLAMFLISFALPAAAYWDY---------- 95 (211)
Q Consensus 31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~G~r~~~~~~-~~~~~i~~~~~~~~~~~~~---------- 95 (211)
+.+++|.++.+.+++..+..+...+.+++.|+++| |+|||+.++++ .....++..+++++ ++.
T Consensus 30 yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~--~~~~~~~~~~~~~ 107 (477)
T TIGR01301 30 YVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA--ADIGHLFGDNLDK 107 (477)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC--chhhhhccccccc
Confidence 45789999999999999999999999999999999 59999998875 55555555565554 332
Q ss_pred -------HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCch--hhHhh-hhhcchhhhhhhhhhhhhh--hcc-------
Q psy3615 96 -------KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTER--SQFIT-SYLGSSFGVALSYPLCGVV--IDT------- 156 (211)
Q Consensus 96 -------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r--~~~~~-~~~~~~~g~~~~~~~~~~l--~~~------- 156 (211)
+.+++.-.+..++.....+...++++|..|+++| +.+.+ .....++|..+++.+++.. .+.
T Consensus 108 ~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~ 187 (477)
T TIGR01301 108 KTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTE 187 (477)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccc
Confidence 2223333444557777888889999999998866 56777 6688899999999998764 221
Q ss_pred ------cCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615 157 ------LGWEAAFYVTGALGVVWWVVWMIVVYDTP 185 (211)
Q Consensus 157 ------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (211)
.+.+..|++.+++.++..++..+..+|.+
T Consensus 188 ~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 188 ACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 15688999988888888888777777764
No 135
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.42 E-value=1.5e-12 Score=108.54 Aligned_cols=147 Identities=17% Similarity=0.108 Sum_probs=130.2
Q ss_pred CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhh
Q psy3615 30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIG 109 (211)
Q Consensus 30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~ 109 (211)
..++++|.+...+|++.+.+.+|..++.++.+++.+|+++++.+..+.+..+++.+..++. ++.+...+..++.|++.
T Consensus 244 ~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~--~~~~~~~~~l~l~G~~~ 321 (524)
T PF05977_consen 244 FARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS--PSFWLALIALFLAGAAW 321 (524)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHH
Confidence 3467789999999999999999999999999999999999999999999999988888777 88888888999999999
Q ss_pred hcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 110 GLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 110 g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
........+.+.+..|++.||+.++ ..+....+..+|..+.|.+.+..|.+..+.+.++..++..++..
T Consensus 322 ~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 322 IIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999 66888888999999999999999999888887766555555443
No 136
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.40 E-value=3.1e-12 Score=105.08 Aligned_cols=159 Identities=11% Similarity=0.024 Sum_probs=107.5
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHH---HHHHhhhhhcccHHHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFL---ISFALPAAAYWDYKAMAGLRI 103 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~ 103 (211)
.+.++++..|.++.+.++....+.++..++.++.|++.||+++++....+.....+ +..........+.+......+
T Consensus 274 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (438)
T TIGR00712 274 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMI 353 (438)
T ss_pred HHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 44555666789999999999999999999999999999999754433333322221 111111111123333333444
Q ss_pred HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhh-hhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhh
Q psy3615 104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFG-VALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVV 181 (211)
Q Consensus 104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g-~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~ 181 (211)
+.|++.............|.+|+++|++++| .+....+| ..++|.+.|.+.++.||...+++...+.++..+..++..
T Consensus 354 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 433 (438)
T TIGR00712 354 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 433 (438)
T ss_pred HHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4554432222223356779999999999999 76666666 578999999999999999999988887777777766666
Q ss_pred cCCC
Q psy3615 182 YDTP 185 (211)
Q Consensus 182 ~~~~ 185 (211)
+|++
T Consensus 434 ~~~~ 437 (438)
T TIGR00712 434 IGEK 437 (438)
T ss_pred hhcc
Confidence 6643
No 137
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.39 E-value=6.2e-12 Score=100.15 Aligned_cols=159 Identities=20% Similarity=0.194 Sum_probs=131.7
Q ss_pred cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615 20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA 99 (211)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (211)
....++++.|.+++..|+|.+..+++...+.++..+++.++|++.|| +.|+.+.....+.++..+...+.. ++.+...
T Consensus 227 ~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~-~~~~~~~ 304 (394)
T COG2814 227 HFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG-ASPALAL 304 (394)
T ss_pred hhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc-chHHHHH
Confidence 44556788899999999999999999999999999999999999999 999999988888877777665542 3455666
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
+.-++.|++............++ ..++.++.+.+ .....++|..+|..++|.+.++.|+....++.+.+.++..++..
T Consensus 305 ~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~ 383 (394)
T COG2814 305 ALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLAL 383 (394)
T ss_pred HHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 66777888877666666667777 33577999999 66999999999999999999999999999999888888777665
Q ss_pred hhh
Q psy3615 179 IVV 181 (211)
Q Consensus 179 ~~~ 181 (211)
...
T Consensus 384 ~~~ 386 (394)
T COG2814 384 LSA 386 (394)
T ss_pred HHH
Confidence 533
No 138
>PRK09669 putative symporter YagG; Provisional
Probab=99.37 E-value=1.8e-12 Score=106.68 Aligned_cols=161 Identities=13% Similarity=0.049 Sum_probs=113.3
Q ss_pred cccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH----hCCc-chhHHHHHHHHHHHHHhhhhhc----cc
Q psy3615 24 LFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS----LGTK-VVFGVSNLAMFLISFALPAAAY----WD 94 (211)
Q Consensus 24 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~G~r-~~~~~~~~~~~i~~~~~~~~~~----~~ 94 (211)
..++..++.+++|+++.+.|.+.++..+..++..++.|+++|| +||| +.++++....++...+...... ..
T Consensus 29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~ 108 (444)
T PRK09669 29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK 108 (444)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence 3455667788999999999999999999999999999999998 7774 5555676777776655443311 12
Q ss_pred HHHHHHHHHHHHhhhhcchHHHHHHhhhcc-CCCchhhHhh-hhhcchhhhhhhhhhhhhhhc-------ccCchHHHHH
Q psy3615 95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWI-PPTERSQFIT-SYLGSSFGVALSYPLCGVVID-------TLGWEAAFYV 165 (211)
Q Consensus 95 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-------~~gw~~~~~~ 165 (211)
.+.+.+..++.+.+.........++.+|+. ++++|.+..+ ......+|..+++.+...+.. ..+|+..+.+
T Consensus 109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i 188 (444)
T PRK09669 109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMV 188 (444)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence 455566667777777777777778999987 4578998877 556666666666554333222 2468878887
Q ss_pred HHHHHHHHHHHHHhhhcCC
Q psy3615 166 TGALGVVWWVVWMIVVYDT 184 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~ 184 (211)
.+++..+..++.++..+|.
T Consensus 189 ~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 189 MGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHHHHHHHHHHHhCCeEEe
Confidence 7777766665555544543
No 139
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.37 E-value=3.8e-12 Score=100.90 Aligned_cols=160 Identities=16% Similarity=0.074 Sum_probs=125.5
Q ss_pred ccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh--CCcchhH-HHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615 23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL--GTKVVFG-VSNLAMFLISFALPAAAYWDYKAMA 99 (211)
Q Consensus 23 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--G~r~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (211)
+....+.++.|+.|.|..+.++..+.+-.+...+.+++||++||+ |||..+. +..+...++..........|+.+..
T Consensus 271 i~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~ 350 (448)
T COG2271 271 INDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDA 350 (448)
T ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 344566677889999999999999999999999999999999996 6666554 4444444455555555444568888
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchh-hhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSF-GVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW 177 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~-g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~ 177 (211)
++.++.|+..-+-....-....|..|++--|++.| ...+..+ |...+....+++.|.+||...|++..+.++++.++.
T Consensus 351 ~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 351 ILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence 88888898765555666777889999999999999 7766666 999999999999999999999998877777766665
Q ss_pred Hhhhc
Q psy3615 178 MIVVY 182 (211)
Q Consensus 178 ~~~~~ 182 (211)
.....
T Consensus 431 ~~~~~ 435 (448)
T COG2271 431 LPVWN 435 (448)
T ss_pred HHHHh
Confidence 54443
No 140
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.36 E-value=8.3e-12 Score=100.98 Aligned_cols=159 Identities=9% Similarity=-0.052 Sum_probs=112.5
Q ss_pred ccccCCCcccccCCchhhHHH--HHHHHHHHHHhhchh-hHHHHHhCCcchhHHHHHHH-HHHHHHhh-hhhccc-HHHH
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLV--LGSFFWLHWSTQIPG-GVLARSLGTKVVFGVSNLAM-FLISFALP-AAAYWD-YKAM 98 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~--~~~~~~~~~i~~~~~-g~l~dr~G~r~~~~~~~~~~-~i~~~~~~-~~~~~~-~~~~ 98 (211)
.+..|.+.++.|.|.+++|.. .+...+...+.+++. ++..||+||||..++...+. +....... +....+ ...+
T Consensus 21 ~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (390)
T TIGR02718 21 MDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWA 100 (390)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 344555677889999999997 466688888888888 45799999999876555332 21222222 111122 3333
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615 99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW 177 (211)
Q Consensus 99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~ 177 (211)
+...++.++..+...+....+..|..++++++...+ ...+..+|..+++...+++.++.|||..|++.+.+.++..+..
T Consensus 101 ~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~ 180 (390)
T TIGR02718 101 VGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCV 180 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 444555666677777888888889888888888877 5577789999999998999999999999999988877766655
Q ss_pred HhhhcC
Q psy3615 178 MIVVYD 183 (211)
Q Consensus 178 ~~~~~~ 183 (211)
++..|+
T Consensus 181 ~~~~~~ 186 (390)
T TIGR02718 181 LWLKDR 186 (390)
T ss_pred HHcCCC
Confidence 444443
No 141
>PRK10054 putative transporter; Provisional
Probab=99.35 E-value=1.1e-11 Score=100.54 Aligned_cols=152 Identities=16% Similarity=0.091 Sum_probs=119.3
Q ss_pred cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcch
Q psy3615 34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAW 113 (211)
Q Consensus 34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 113 (211)
+.+.+....+.+.....+.....+++.|++.||+++|+.+..+..+..++.....+. .++.+.+.+..++.|++.+...
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~ 316 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-GNSLLLWGMSAAVFTVGEIIYA 316 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHH
Confidence 445566677788888878777888899999999999999999988887777666543 1456667778889999988888
Q ss_pred HHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy3615 114 PSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPD 186 (211)
Q Consensus 114 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (211)
|.....+.+..|++.|+++.+.+....+|..+||.++|.+.++.|....|++.+....+..++.....+|+|.
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQSLGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARPW 389 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCcc
Confidence 8888999999999999998884445668999999999999999998888888766666655555544444443
No 142
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.35 E-value=1.9e-11 Score=98.71 Aligned_cols=137 Identities=11% Similarity=0.029 Sum_probs=114.9
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcc
Q psy3615 33 SLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLA 112 (211)
Q Consensus 33 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 112 (211)
++.|.+..+.+.+.+...++..+..++.|++.||+|+|+.+..+.+..++..++.... ++.+.+++..++.|++.+..
T Consensus 233 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~ 310 (382)
T PRK11128 233 QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST--TALPWLIVIQILHCGTFTVC 310 (382)
T ss_pred HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHH
Confidence 5689999899999999999999999999999999999999999998888877777666 78888888999999999988
Q ss_pred hHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHH
Q psy3615 113 WPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVW 173 (211)
Q Consensus 113 ~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~ 173 (211)
.+....+..+. +++++++..+ .. ....+|..++|.++|.+.++.|+ ..++..+.+.++.
T Consensus 311 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 311 HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 88888888886 5566788888 54 55677889999999999999887 4566655555443
No 143
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.35 E-value=3.9e-12 Score=101.23 Aligned_cols=124 Identities=17% Similarity=0.116 Sum_probs=110.3
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc-cHHHHHHHHHHHHhhhhc
Q psy3615 33 SLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW-DYKAMAGLRIVQGVIGGL 111 (211)
Q Consensus 33 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~ 111 (211)
+.+|.++.+.+.+.+...++..++.++.+++.||++||+.+..+..+.++......+. + +.+.+.+..++.|++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~ 317 (365)
T TIGR00900 240 KYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT--PPNFPLFLVLWFAIGVGYGP 317 (365)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHHHH
Confidence 3489999999999999999999999999999999999999998887777777776665 4 477788889999999999
Q ss_pred chHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC
Q psy3615 112 AWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG 158 (211)
Q Consensus 112 ~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g 158 (211)
..+...+++.|..|+++|++..+ .+....+|..++|.+.+.+.++.|
T Consensus 318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 318 INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999 779999999999999999988643
No 144
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.35 E-value=2.4e-11 Score=98.46 Aligned_cols=142 Identities=11% Similarity=0.106 Sum_probs=117.4
Q ss_pred cCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHH
Q psy3615 36 HWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPS 115 (211)
Q Consensus 36 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 115 (211)
+.+....+.+.+...+...++.+..|++.||+|+|+.+.++..+.++...+.... ++.+.++..+++.|++.......
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~ 327 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA--TTALEVVILKMLHAFEVPFLLVG 327 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888888888999999999999999999999999998888877766555 77888888899999987766666
Q ss_pred HHHHhhhccCCCchhhHhh--hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615 116 MHHLVAHWIPPTERSQFIT--SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 116 ~~~~~~~~~~~~~r~~~~~--~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
...+..+..+++.+++..+ .+....+|..+++.+.|++.+..||+..|.+.+++.++..++..+
T Consensus 328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888877777665 347789999999999999999999999999988887776665543
No 145
>PRK10504 putative transporter; Provisional
Probab=99.35 E-value=7.3e-12 Score=103.71 Aligned_cols=128 Identities=13% Similarity=0.139 Sum_probs=106.0
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh-cccHHHHHHHHHHHHhhhh
Q psy3615 32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA-YWDYKAMAGLRIVQGVIGG 110 (211)
Q Consensus 32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~l~G~~~g 110 (211)
+..+|.++.+.++......++..++.++.|++.||+|+|+++..+..+.++...+..+.. .++.+.+.+..++.|++.+
T Consensus 289 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 368 (471)
T PRK10504 289 QIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNS 368 (471)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 445788999999999989999999999999999999999999999888887766555432 1233444556777888888
Q ss_pred cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCc
Q psy3615 111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGW 159 (211)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw 159 (211)
...+....+..+..|+++++.+.+ .++...+|..+|+.+.+.+.+..++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 369 TRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888889999999999999999999 8899999999999999988776554
No 146
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.34 E-value=2.5e-11 Score=98.73 Aligned_cols=147 Identities=12% Similarity=-0.048 Sum_probs=111.4
Q ss_pred CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh---cccHHHHHHHHHHHH
Q psy3615 30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA---YWDYKAMAGLRIVQG 106 (211)
Q Consensus 30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~l~G 106 (211)
.+.+++|+++.+.++......++..++.++.|++.||+++|+.+.++..+..++..+..+.. .++.+.+++..++.|
T Consensus 241 ~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 320 (406)
T PRK15402 241 ILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYA 320 (406)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence 34567899999999888888888999999999999999999999988887777666554431 134566677888899
Q ss_pred hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615 107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW 177 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~ 177 (211)
++.+...+......... ++++||+..+ .+....+|..+|+.+.+.+.+..++....+......++.....
T Consensus 321 ~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
T PRK15402 321 FGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLV 391 (406)
T ss_pred HHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHH
Confidence 98887776666655444 4488999999 7788889999999999999888776655555444444443333
No 147
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.34 E-value=2e-11 Score=100.14 Aligned_cols=154 Identities=15% Similarity=0.069 Sum_probs=97.4
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhh--hhhcccHHHHHHHH
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALP--AAAYWDYKAMAGLR 102 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~ 102 (211)
...++.+.+++|.+..+.+...+...++..+++++.|+++||+|||+.+.++.++.++...... ....++....+...
T Consensus 264 ~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (432)
T PRK10406 264 TYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLV 343 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 3445556677899988889888888888889999999999999999988776655443332221 11112222222222
Q ss_pred HHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcch-hhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHHh
Q psy3615 103 IVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSS-FGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 103 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~-~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~ 179 (211)
.+.++..+...+....+.+|.+|++.|++++| .+...+ +.....|.+.+.+ +..| |...++..+...++..+..++
T Consensus 344 ~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 344 MCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 22223333344556788899999999999999 774433 3344577777755 4455 555555555555554444433
No 148
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.33 E-value=1.8e-11 Score=101.35 Aligned_cols=155 Identities=16% Similarity=0.057 Sum_probs=115.5
Q ss_pred cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhC-----CcchhHHHHHHHH-HHHHHhhhhhcccH-HHH
Q psy3615 26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLG-----TKVVFGVSNLAMF-LISFALPAAAYWDY-KAM 98 (211)
Q Consensus 26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-----~r~~~~~~~~~~~-i~~~~~~~~~~~~~-~~~ 98 (211)
...+.+++++|+|..+++...+...+...+-.+ +|.++||++ ||+.++++.++.+ +........ ++. ...
T Consensus 47 ~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~--~~~~~~~ 123 (468)
T TIGR00788 47 PLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGK--VSSAKVA 123 (468)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccc--cchHHHH
Confidence 345666788999999999999999999888555 999999997 7777777776663 333333222 343 344
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh----hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHH
Q psy3615 99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT----SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWW 174 (211)
Q Consensus 99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~ 174 (211)
.+..++.+++.+...++...+..|..+ +++....+ .+....+|..+++.+++.+.+..+|+..|++.+.+.++..
T Consensus 124 ~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~ 202 (468)
T TIGR00788 124 AAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQL 202 (468)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence 447889999999999999999999998 55544333 2233458999999999999999999999999888877764
Q ss_pred HHHHhhhcCCC
Q psy3615 175 VVWMIVVYDTP 185 (211)
Q Consensus 175 ~~~~~~~~~~~ 185 (211)
+. .++.+|++
T Consensus 203 ~~-~~~~~E~~ 212 (468)
T TIGR00788 203 FV-SNLSKERR 212 (468)
T ss_pred HH-HHhccccc
Confidence 43 34456643
No 149
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.33 E-value=9.5e-11 Score=96.01 Aligned_cols=122 Identities=17% Similarity=0.141 Sum_probs=100.9
Q ss_pred CchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHH
Q psy3615 38 DSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMH 117 (211)
Q Consensus 38 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~ 117 (211)
++.+.+++.+...++..++.++++++.||+|+|+++.++.++.+++.+...+.. ++.+.+++..++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~ 333 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-SNLPLILVLIILAGFGQNFVTGLVW 333 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888999999999999999999999999999888888776665542 3456667778888999988888889
Q ss_pred HHhhhccC-------CCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCch
Q psy3615 118 HLVAHWIP-------PTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWE 160 (211)
Q Consensus 118 ~~~~~~~~-------~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~ 160 (211)
++++|..+ ++++|...+ .+....+|..+++.+.+.+.+..||.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 334 ALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99988865 456788889 77889999999999999998877663
No 150
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.33 E-value=2.2e-11 Score=94.90 Aligned_cols=154 Identities=13% Similarity=0.060 Sum_probs=134.5
Q ss_pred cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q psy3615 22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGL 101 (211)
Q Consensus 22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (211)
+.+.++.+++++++|+|.+..|.++++..+...+.+++..++..|+|.++.+..++++.+++..+-... +...++.+
T Consensus 29 tsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~---~~~~L~~g 105 (395)
T COG2807 29 TSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG---GLPLLFLG 105 (395)
T ss_pred hhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc---cHHHHHHH
Confidence 345677788999999999999999999999999999999999999999999999999999999887653 56788889
Q ss_pred HHHHHhhhhcchHHHHHHhhhccCCCchhhHhhhh-hcchhhhhhhhhhhhhhhccc-CchHHHHHHHHHHHHHHHHHHh
Q psy3615 102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSY-LGSSFGVALSYPLCGVVIDTL-GWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~g~~~~~~~~~~l~~~~-gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
-.+.|.+.+......+.++-+.||+ +-+..++.| ...++|..+++.+.-.+.++. |||......+..+++..++++.
T Consensus 106 t~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 106 TLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred HHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999985 477788844 888888888888888887776 7999999988888887776644
No 151
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.31 E-value=3.6e-11 Score=97.29 Aligned_cols=148 Identities=13% Similarity=0.003 Sum_probs=110.0
Q ss_pred ccCCCcccccCCchhhHHHHHHHHH-HHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh-hh---cccHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFW-LHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA-AA---YWDYKAMAGL 101 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~-~~---~~~~~~~~~~ 101 (211)
..+++ +|.|+++++.+++...... ...++.++.|++.||+|+|+.+.++..+.++..+.... .. .++.......
T Consensus 231 ~~~~l-~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (390)
T TIGR02718 231 SKLYL-VDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC 309 (390)
T ss_pred hhHHH-HhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence 33444 5589999999999887764 66677899999999999999998877665333222211 10 1223334444
Q ss_pred HHHHHhhhhcchHHHHHHhhhccCC-CchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHH
Q psy3615 102 RIVQGVIGGLAWPSMHHLVAHWIPP-TERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWV 175 (211)
Q Consensus 102 ~~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~ 175 (211)
..+.+++.+...+...+...+..++ +++++.++ .+...++|..++|.++|.+.++.|++..|+..+++.++..+
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 5556677777778888888888776 78999999 77888999999999999999999999999887776665443
No 152
>TIGR00898 2A0119 cation transport protein.
Probab=99.30 E-value=5e-11 Score=99.55 Aligned_cols=137 Identities=14% Similarity=0.005 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccC
Q psy3615 46 LGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIP 125 (211)
Q Consensus 46 ~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~ 125 (211)
.....+...++.++.+++.||+|||+.+.++.++.+++.++..+......+..++..++.+++.+..++....+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34455667788889999999999999999999888888777666522222445555666677777778888999999999
Q ss_pred CCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615 126 PTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTP 185 (211)
Q Consensus 126 ~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (211)
++.|+++++ ......+|..++|.+.+ + ...++..++.+.+...++..++.+ ++||+.
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~ 498 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTL-FLPETK 498 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHH-cCcCCC
Confidence 999999999 77888999999999988 4 335566777777777776665554 466654
No 153
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.30 E-value=1.8e-10 Score=90.15 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=113.7
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615 32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL 111 (211)
Q Consensus 32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 111 (211)
-+++|+++.+++.+........++...+.|.++||+|||+..+..+++.+++++..- . ++++.++++|++.|++...
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-~--~~~~~L~~GRvlgGiaTSL 137 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-S--SNYPVLLLGRVLGGIATSL 137 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-c--cccHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999998887542 3 7899999999999999998
Q ss_pred chHHHHHH-hhhccCCCchhhHhh-hh-----hcchhhhhhhhhhhhhhhcccCc--hHHHHHHHHHHHHHHHHHHhhhc
Q psy3615 112 AWPSMHHL-VAHWIPPTERSQFIT-SY-----LGSSFGVALSYPLCGVVIDTLGW--EAAFYVTGALGVVWWVVWMIVVY 182 (211)
Q Consensus 112 ~~~~~~~~-~~~~~~~~~r~~~~~-~~-----~~~~~g~~~~~~~~~~l~~~~gw--~~~~~~~~~~~~~~~~~~~~~~~ 182 (211)
.+.+--++ +.|+-..+.+....+ .. ..+++-.+.+..++.++.+..+. ..+|.....+..+..++....++
T Consensus 138 LfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 138 LFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccc
Confidence 87776654 445533332333333 22 22344456666777777776654 77888877777777666665566
Q ss_pred CCCC
Q psy3615 183 DTPD 186 (211)
Q Consensus 183 ~~~~ 186 (211)
|...
T Consensus 218 ENyg 221 (354)
T PF05631_consen 218 ENYG 221 (354)
T ss_pred ccCC
Confidence 6543
No 154
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.30 E-value=1e-11 Score=103.10 Aligned_cols=148 Identities=12% Similarity=0.026 Sum_probs=98.5
Q ss_pred cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcc-------hhHHHHHHHHHHHHHhhhhhcccHHHHHH
Q psy3615 28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKV-------VFGVSNLAMFLISFALPAAAYWDYKAMAG 100 (211)
Q Consensus 28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 100 (211)
++++.+++|++..+.+.+.++..++..++.+++|+++||++||+ ...+...+.++..++.... ++.+..++
T Consensus 276 p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~--~~~~~~~~ 353 (476)
T PLN00028 276 AEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA--NSLGAAIV 353 (476)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc--chHHHHHH
Confidence 44456778999999999999999999999999999999998752 2222333333333333333 44555555
Q ss_pred HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615 101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
..++.+++.+...+...+++.+..| ++++...+ ......+|..+++.+.+ ..+..+|+..|++.+++.++..++.++
T Consensus 354 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 354 VMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence 5556666555444555555666554 67999888 66666777777766543 122346999999988777776665544
No 155
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.29 E-value=3.8e-11 Score=96.96 Aligned_cols=150 Identities=8% Similarity=-0.072 Sum_probs=108.6
Q ss_pred cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615 28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGV 107 (211)
Q Consensus 28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~ 107 (211)
.+.+.+.+|.++.+.+++.+...++..+++++.|++.||+|+|+.+..+..+.+++.++.... .++.+...+..++.++
T Consensus 223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~ 301 (382)
T PRK10091 223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF-GGMKTASLIFAFICCA 301 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 455666789999999999999999999999999999999999999998888877776554332 1344555566666666
Q ss_pred hhhcchHHHHH-HhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcc-cCchHHHHHHHHHHHHHHHHHHh
Q psy3615 108 IGGLAWPSMHH-LVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDT-LGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 108 ~~g~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
+.....+.... ...+..+++.++... ......+|..+||.+++++.+. .+|++.+.+.+.+..+.......
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 302 GLFALSAPLQILLLQNAKGGELLGAAG-GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHHhhhHHHHHHHHHhCCcchHHHHHH-HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence 65544444343 344444444444433 3456789999999999999985 67999999887776665544443
No 156
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.29 E-value=6.1e-11 Score=94.23 Aligned_cols=144 Identities=17% Similarity=0.081 Sum_probs=122.8
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615 32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL 111 (211)
Q Consensus 32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 111 (211)
.+++|++..+...+.....+..+++++++|++.||+|.|+++.++.++..+.++...+. .....+.+...+.|...|.
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~--~~~~~f~i~gll~g~s~G~ 357 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL--EGELDFWILGLLVGTSLGG 357 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHhcch
Confidence 55899999999999999999999999999999999999999999999998877766555 4556777888999999999
Q ss_pred chHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHH
Q psy3615 112 AWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVW 177 (211)
Q Consensus 112 ~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~ 177 (211)
.++...++..+..|+++-++..| ..........+||.+.+.+.+..| -|..+.....+..+..++.
T Consensus 358 ~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 358 AQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred HHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence 99999999999999999999999 668999999999999999988765 5655555555554444443
No 157
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=99.28 E-value=6.5e-11 Score=89.41 Aligned_cols=132 Identities=12% Similarity=-0.030 Sum_probs=104.4
Q ss_pred ccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc-----ccHHH
Q psy3615 23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY-----WDYKA 97 (211)
Q Consensus 23 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~-----~~~~~ 97 (211)
.++...|.+++.+|+|.+|...+.+.-.+|..+ .++.|.+.|++|++.++.+|.+...++..+..+... .++|.
T Consensus 20 ~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~ 98 (250)
T PF06813_consen 20 TFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWL 98 (250)
T ss_pred chhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHH
Confidence 345566788999999999999999999999886 588999999999999999999999999887776532 24667
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc
Q psy3615 98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT 156 (211)
Q Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~ 156 (211)
+.+..++.|.+......+......+.|| ++||++.+ .-....+++.+-..+-..+.+.
T Consensus 99 ~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 99 MCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 7777777777777666777777778888 57999999 6677777776655555555443
No 158
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.28 E-value=2.6e-11 Score=101.30 Aligned_cols=137 Identities=10% Similarity=-0.076 Sum_probs=93.1
Q ss_pred HHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc--cHHHHHHHHHHHHhhhhcchHHHHHHhhhccC
Q psy3615 48 SFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW--DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIP 125 (211)
Q Consensus 48 ~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~ 125 (211)
...++..++.++.+++.||+|||++++++..+.+++..+..+...+ +...+....+...+......+....+.+|.+|
T Consensus 343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p 422 (502)
T TIGR00887 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFP 422 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence 3445566688889999999999999988887777766555443111 11111111111122222234556777899999
Q ss_pred CCchhhHhh-hhhcchhhhhhhhhhhhhhhcc----------cCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615 126 PTERSQFIT-SYLGSSFGVALSYPLCGVVIDT----------LGWEAAFYVTGALGVVWWVVWMIVVYDTP 185 (211)
Q Consensus 126 ~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~----------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (211)
.+.|+++.+ .+....+|.+++|.+.+.+.+. .++...|++.+++.++..+.. +++||++
T Consensus 423 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~ 492 (502)
T TIGR00887 423 TRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETK 492 (502)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCC
Confidence 999999999 8889999999999999988874 344567787777777665544 4567654
No 159
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.27 E-value=1e-10 Score=95.12 Aligned_cols=147 Identities=12% Similarity=0.033 Sum_probs=102.7
Q ss_pred CCCcccccCCchhhHHHHHHHH-HHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhh---hhhcccHHHHHHHHH-
Q psy3615 29 GDSGSLFHWDSNVQNLVLGSFF-WLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALP---AAAYWDYKAMAGLRI- 103 (211)
Q Consensus 29 ~~i~~~~~~s~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~- 103 (211)
+.+.+++|+++.+.+++..... ++..++.+++|++.||+|+|+.+..+..+..+..+... +. .++.+.+++..+
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~ 312 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT-PKHLWTMALAIGI 312 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 3456778999999999886654 56889999999999999999988777766655543332 22 134455554443
Q ss_pred ---HHHhhhhcchHHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615 104 ---VQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 104 ---l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
..|++.+...+....++.+.+|.++++. .....+++...+.+++|.+.++.||+..|...++++++..++.+.
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 313 ENLCGGMGTAAFVALLMALCNRSFSATQYAL---LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666667777777777554432 334446676666778999999999999999988887776555433
No 160
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.27 E-value=1.2e-10 Score=94.57 Aligned_cols=145 Identities=12% Similarity=0.079 Sum_probs=112.3
Q ss_pred cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHH-HHHhhhhhcccHHHHHHHHHHHH
Q psy3615 28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLI-SFALPAAAYWDYKAMAGLRIVQG 106 (211)
Q Consensus 28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~l~G 106 (211)
.|.+.+++|+++++.+.....+.++..++.++.+++.||.+ |+.+..+..+..+. .++.... ++.+.+.+..++.|
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~G 316 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG--SDKIVATGVAIIWG 316 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHH
Confidence 45556778999999999999999999999999999999964 44444444443333 3333333 56777778889999
Q ss_pred hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615 107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV 176 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~ 176 (211)
++.+...+...+.+.+..| +++++..+ .+...++|..+|+.++|++.+..|++..++..+++..+..+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence 9999888988989999887 55677777 667888999999999999999999988888877665554433
No 161
>KOG2325|consensus
Probab=99.26 E-value=7.8e-11 Score=96.08 Aligned_cols=154 Identities=16% Similarity=0.081 Sum_probs=122.1
Q ss_pred cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCC-cchhHHHHHHHHHHHHHh-hhhhcc--cHHHHHHHHHHHHhhh
Q psy3615 34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGT-KVVFGVSNLAMFLISFAL-PAAAYW--DYKAMAGLRIVQGVIG 109 (211)
Q Consensus 34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~-r~~~~~~~~~~~i~~~~~-~~~~~~--~~~~~~~~~~l~G~~~ 109 (211)
|.+-+.+..|++.+...++.+++++..|+...|.+. |+.++.+.++..++.++. .+...+ .-+.++++|++.|+|.
T Consensus 65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~ 144 (488)
T KOG2325|consen 65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV 144 (488)
T ss_pred CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc
Confidence 366677789999999999999999999999999986 888999999999999887 443323 4678899999999997
Q ss_pred hcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-------------cCchHHHHHHHHHHHHHHH
Q psy3615 110 GLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-------------LGWEAAFYVTGALGVVWWV 175 (211)
Q Consensus 110 g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-------------~gw~~~~~~~~~~~~~~~~ 175 (211)
| ......+++++..-.++|.++++ ...+..+|..+||.+...+... .-+..+-|++..+.++..+
T Consensus 145 ~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v 223 (488)
T KOG2325|consen 145 G-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIV 223 (488)
T ss_pred c-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHH
Confidence 7 45667889998887888999999 7788888888888887665431 1134566777888888777
Q ss_pred HHHhhhcCCCCCC
Q psy3615 176 VWMIVVYDTPDQH 188 (211)
Q Consensus 176 ~~~~~~~~~~~~~ 188 (211)
+..++.+|.+++.
T Consensus 224 ~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 224 IILFFFKEVYRGI 236 (488)
T ss_pred HHHhheeecccCc
Confidence 7777777765543
No 162
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.26 E-value=1.3e-10 Score=93.47 Aligned_cols=146 Identities=10% Similarity=0.152 Sum_probs=126.4
Q ss_pred CchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHH
Q psy3615 38 DSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMH 117 (211)
Q Consensus 38 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~ 117 (211)
+....|.+.+..-+.-++...+..++.+|+|.|+.++++..+.++=..++++. ++.+.+.+.+.+.|+..+.......
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~--~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA--TNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888889999999999999999999999999999999999998999888 8999999999999999999999999
Q ss_pred HHhhhccCCCchhhHhh--hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615 118 HLVAHWIPPTERSQFIT--SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTP 185 (211)
Q Consensus 118 ~~~~~~~~~~~r~~~~~--~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (211)
.++++.+|++...+... .....++|..+.++++|.+.|+.|.+.+|++++.+.++..++..+.+++++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 99999999988777777 448899999999999999999999999999999998888888877776543
No 163
>KOG2504|consensus
Probab=99.25 E-value=1.3e-11 Score=102.53 Aligned_cols=152 Identities=21% Similarity=0.191 Sum_probs=132.8
Q ss_pred cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhC--CcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q psy3615 26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLG--TKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRI 103 (211)
Q Consensus 26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G--~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 103 (211)
...+...++.++++.+...+.++..+...++.+..|+++|+.. ++.+..++.+..+++.+.+++. ++++.++....
T Consensus 319 ~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~--~~~~~l~~~~~ 396 (509)
T KOG2504|consen 319 VYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA--TTYVGLIVFSI 396 (509)
T ss_pred HHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHH
Confidence 3445556789999999999999999999999999999999988 4555567777777777777777 88999999999
Q ss_pred HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHHh
Q psy3615 104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~ 179 (211)
+.|++.|.........+.|..+.++-..+.| ......++..+||++.+++.+..+ |...|+.+++..++...++++
T Consensus 397 ~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 397 LFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence 9999999998888899999999999999999 889999999999999999999887 999999999888887766554
No 164
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.24 E-value=4.7e-11 Score=108.65 Aligned_cols=144 Identities=16% Similarity=0.156 Sum_probs=117.6
Q ss_pred ccCCCcccccCCch-hhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSN-VQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQ 105 (211)
Q Consensus 27 ~~~~i~~~~~~s~~-~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 105 (211)
.+.++.+.+|++.. +.+++.+...++.++++++.|++.||+++++++.++.++.+++.++..+. .+.+.+++..++.
T Consensus 255 ~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 332 (1146)
T PRK08633 255 FPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--PSLASVLVLFFLF 332 (1146)
T ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh--hhHHHHHHHHHHH
Confidence 44555677899988 99999999999999999999999999999999998888888877777666 6777888888999
Q ss_pred HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-cCchHHHHHHHHHHHH
Q psy3615 106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-LGWEAAFYVTGALGVV 172 (211)
Q Consensus 106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~~~~~~~~~ 172 (211)
|++.+...+...+++.+..|+++||++++ .+....+|..+++.+++.+... .++...+++.+.+.++
T Consensus 333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 99999888889999999999999999999 7788888888887777665442 3455556555544433
No 165
>TIGR00895 2A0115 benzoate transport.
Probab=99.24 E-value=3.5e-11 Score=96.88 Aligned_cols=123 Identities=15% Similarity=0.056 Sum_probs=100.3
Q ss_pred CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhh
Q psy3615 29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVI 108 (211)
Q Consensus 29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~ 108 (211)
|.+.+++|.++.+.+...+...++..++.++.|++.||+|+|+.+. ...+.++...+.... .++.+..++..++.|++
T Consensus 274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~ 351 (398)
T TIGR00895 274 PKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGST-LFSPTLLLLLGAIAGFF 351 (398)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHH
Confidence 3556778899999999999999999999999999999999995444 333444433333221 25667777888999999
Q ss_pred hhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhh
Q psy3615 109 GGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV 153 (211)
Q Consensus 109 ~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l 153 (211)
.+...+...+++.|.+|+++|+++.+ ......+|..++|.+.|++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 352 VNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 99999999999999999999999999 7788899999999999875
No 166
>PRK09848 glucuronide transporter; Provisional
Probab=99.23 E-value=1.9e-10 Score=94.75 Aligned_cols=130 Identities=12% Similarity=0.014 Sum_probs=101.2
Q ss_pred CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhh
Q psy3615 30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIG 109 (211)
Q Consensus 30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~ 109 (211)
.+++.+|.++...++......++..++.++.+++.||+|+|+++.++.++..++.+...+....+.+.+.+..++.|+|.
T Consensus 254 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~ 333 (448)
T PRK09848 254 YVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQ 333 (448)
T ss_pred eEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence 34556776655555545555677888999999999999999999999988888777665543345666777788899999
Q ss_pred hcchHHHHHHhhhccCCC-------chhhHhh-hhhcchhhhhhhhhhhhhhhcccCc
Q psy3615 110 GLAWPSMHHLVAHWIPPT-------ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGW 159 (211)
Q Consensus 110 g~~~~~~~~~~~~~~~~~-------~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw 159 (211)
+...+...++.+|..|.+ ++|...+ ......+|..+++.+.+.+.+..|+
T Consensus 334 ~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 334 GVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999998888754 3588888 7788899999999999888766554
No 167
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.23 E-value=2.3e-10 Score=89.92 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=105.3
Q ss_pred cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcch
Q psy3615 34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAW 113 (211)
Q Consensus 34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 113 (211)
.+|+++.+.+...+.+..++.++++..+++.||+|+|+++.++..+..++.++.... ++... ...-++.|++.+..+
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~--~~~~~-~~~~~l~g~~~s~i~ 248 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT--HGYVA-MWFVLALGLFNSIMF 248 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc--CCHHH-HHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999988888877776555444 33322 345567899999999
Q ss_pred HHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccCchHHHHHHH
Q psy3615 114 PSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTG 167 (211)
Q Consensus 114 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~ 167 (211)
|...+...+.+|++ .+++.++.....+|..+.|++.|.+.|..|.+.+|++..
T Consensus 249 P~~~s~a~~~~~~~-~~~asai~~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 249 PTIFSLALNALGRH-TSQGSGILCLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHHHHhhhhhh-hhhhHHHHHHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 99999999988754 555556445667899999999999999989888887443
No 168
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.23 E-value=1.1e-10 Score=94.97 Aligned_cols=147 Identities=16% Similarity=0.100 Sum_probs=108.9
Q ss_pred CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHH-HhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615 29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLAR-SLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGV 107 (211)
Q Consensus 29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-r~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~ 107 (211)
|...++.+.++.+.+++.+...++......+.+++.| |++.++.+..+..+.+++..+.... ++++.+.+..++.++
T Consensus 232 p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~ 309 (400)
T PRK11646 232 PIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV--SNLQQLFTLICLFYI 309 (400)
T ss_pred hhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHH
Confidence 3333444447788888888877776666655566665 5676777778887777777766666 667777777788888
Q ss_pred hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc---C-chHHHHHHHHHHHHHHHHH
Q psy3615 108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL---G-WEAAFYVTGALGVVWWVVW 177 (211)
Q Consensus 108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~---g-w~~~~~~~~~~~~~~~~~~ 177 (211)
+.+...|...+++.+..|+++|+++++ ......+|..+||.+.|++.++. + ....++..+...++..+..
T Consensus 310 g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (400)
T PRK11646 310 GSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLAL 384 (400)
T ss_pred HHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999999 77899999999999999998874 3 2455555555555544443
No 169
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.21 E-value=4.7e-11 Score=95.42 Aligned_cols=136 Identities=10% Similarity=-0.053 Sum_probs=98.9
Q ss_pred cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHH---HHHHHHHhhhhhcccHHHHHHHHHH
Q psy3615 28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLA---MFLISFALPAAAYWDYKAMAGLRIV 104 (211)
Q Consensus 28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~l 104 (211)
+..+.+++|.++.+.+...+...++..++.++.|++.||+.+|+........ ..++..........+.....+..++
T Consensus 240 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (379)
T TIGR00881 240 PLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFA 319 (379)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 3445677899999999999999999999999999999987443322222211 1112222212111344555666677
Q ss_pred HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHH
Q psy3615 105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAF 163 (211)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~ 163 (211)
.|+......+....+..|.+|+++|+++.+ ......+|..++|.+.+.+.++.||++.|
T Consensus 320 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 320 LGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 777655556666788999999999999999 77889999999999999999999998754
No 170
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.20 E-value=2e-10 Score=93.13 Aligned_cols=145 Identities=14% Similarity=0.026 Sum_probs=111.2
Q ss_pred CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhh
Q psy3615 30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIG 109 (211)
Q Consensus 30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~ 109 (211)
.+++.+|.++.+.|.+.+...++..++++..+++.||+++|+++..+. ..++......+. ++++......++.|++.
T Consensus 231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~--~~~~~~~~~~~~~G~~~ 307 (393)
T PRK11195 231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ--HSLLPAYPLLILIGALG 307 (393)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH--hHHHHHHHHHHHHHHhh
Confidence 456678999999999999999999999999999999999998888775 334444444444 56666777788899998
Q ss_pred hcchHHHHHHhhhccCCCc-hhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 110 GLAWPSMHHLVAHWIPPTE-RSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 110 g~~~~~~~~~~~~~~~~~~-r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
+...+...+.+.+..|++. +|++.+ .+...+++..++..+.+.+ +..|-+..+.+.+...++...+..
T Consensus 308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence 8888888888888766554 799999 7899999999999888855 557777666665555444444433
No 171
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.19 E-value=2.8e-11 Score=100.40 Aligned_cols=162 Identities=14% Similarity=0.033 Sum_probs=112.4
Q ss_pred ccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHH----HhCC-cchhHHHHHHHHHHHHHhhhhhc--c--
Q psy3615 23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLAR----SLGT-KVVFGVSNLAMFLISFALPAAAY--W-- 93 (211)
Q Consensus 23 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~G~-r~~~~~~~~~~~i~~~~~~~~~~--~-- 93 (211)
...++..++.+.+|+++..+|.+..+..+..++..++.|.++| |+|| |+.++++....+++..++..... +
T Consensus 25 ~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~ 104 (473)
T PRK10429 25 VYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTA 104 (473)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccH
Confidence 3345566778889999999999999999999999999999999 6698 55666777777777655543210 1
Q ss_pred cHHHHHHHHHHHHhhhhcchHHHHHHhhhcc-CCCchhhHhh-hhhcchhhhhhhhhhhhhhhc-------ccCchHHHH
Q psy3615 94 DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWI-PPTERSQFIT-SYLGSSFGVALSYPLCGVVID-------TLGWEAAFY 164 (211)
Q Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-------~~gw~~~~~ 164 (211)
.+..+.+..++.+++.........++..|.. ++++|.+..+ ...+.++|..+.+.+...+.+ ..+|+....
T Consensus 105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 184 (473)
T PRK10429 105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTL 184 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence 1334555666778888888888889999988 5789999888 566666665555444333221 134666666
Q ss_pred HHHHHHHHHHHHHHhhhcCC
Q psy3615 165 VTGALGVVWWVVWMIVVYDT 184 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~ 184 (211)
+.+++..+..++.++..+|.
T Consensus 185 i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 185 VLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred HHHHHHHHHHHHHHcCceec
Confidence 66666555555555445554
No 172
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.19 E-value=6.3e-11 Score=96.69 Aligned_cols=142 Identities=15% Similarity=-0.043 Sum_probs=95.5
Q ss_pred cccCCCcc-cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcch-hHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q psy3615 26 QQDGDSGS-LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVV-FGVSNLAMFLISFALPAAAYWDYKAMAGLRI 103 (211)
Q Consensus 26 ~~~~~i~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 103 (211)
..++.+++ ..+.+..+.+.......++..++.+..|+++||+++|+. +.......+++..+. ... ++....+....
T Consensus 264 ~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~ 341 (412)
T TIGR02332 264 WTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA-SAT-DHNLIQLLGII 341 (412)
T ss_pred HHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH-Hhc-CCHHHHHHHHH
Confidence 34444444 246677788999999999999999999999999998775 333333333332222 121 22222222222
Q ss_pred HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHH
Q psy3615 104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGAL 169 (211)
Q Consensus 104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~ 169 (211)
+.+++.....+.......|.+|+++|++++| .+...++|..++|.+.+.+.+..| |++.+++.+++
T Consensus 342 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 342 MASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 3333333233444455567889999999999 888999999999999999999875 99888876554
No 173
>PRK10133 L-fucose transporter; Provisional
Probab=99.19 E-value=4.8e-10 Score=92.25 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=108.8
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615 32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL 111 (211)
Q Consensus 32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 111 (211)
++.+|+++.+.++....+.++..+++++.|++.||+|+|+++..+..+..+..++..+. ++. ..+....+.|++.+.
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~-~~~~~~~l~glg~~~ 363 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGH-VGLIALTLCSAFMSI 363 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--CCh-HHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999988887777666555444 333 234567789999999
Q ss_pred chHHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHH
Q psy3615 112 AWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVW 173 (211)
Q Consensus 112 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~ 173 (211)
.+|...+...+.+++ +.+.+.+......+|..++|++.+.+.+..| -+..|++.....+..
T Consensus 364 i~P~~~s~a~~~~~~-~~~~as~l~~~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~ 425 (438)
T PRK10133 364 QYPTIFSLGIKNLGQ-DTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_pred HHHHHHHHHHcccch-hhccchhHHhHHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 999999999999875 3566666333445678889999999999887 778887654444433
No 174
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.18 E-value=1e-10 Score=92.82 Aligned_cols=154 Identities=18% Similarity=0.101 Sum_probs=121.7
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc-----ccHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY-----WDYKAMAGL 101 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~ 101 (211)
++.+++++|++++.+.+.....+.+...+..+.+|+++||+|.+|++.+..+.++++..+..+... .+...+++.
T Consensus 241 l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 320 (417)
T COG2223 241 LPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAV 320 (417)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHH
Confidence 445678899999999999999999999999999999999999999999999998888877765521 234444444
Q ss_pred HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHHh
Q psy3615 102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~ 179 (211)
.+.+++..|.....+..++..++|+ +-|.+.| +.....+|+..-|...+...+..| +...|++...+.+++.++.+.
T Consensus 321 ~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 321 FLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred HHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455554455667777888864 6888888 889999999999999999988888 888899888888887776654
Q ss_pred hh
Q psy3615 180 VV 181 (211)
Q Consensus 180 ~~ 181 (211)
..
T Consensus 400 ~y 401 (417)
T COG2223 400 LY 401 (417)
T ss_pred HH
Confidence 33
No 175
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.17 E-value=9e-11 Score=97.36 Aligned_cols=130 Identities=8% Similarity=0.053 Sum_probs=109.7
Q ss_pred cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh--hhcccHHHHHHHHHHH
Q psy3615 28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA--AAYWDYKAMAGLRIVQ 105 (211)
Q Consensus 28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~l~ 105 (211)
+.++++.+|.++.+.++......++..++.++.|++.||+|||+.+.++..+.+++..+..+ ....+.+.+....++.
T Consensus 279 p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 358 (485)
T TIGR00711 279 PLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIR 358 (485)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 34456678999999999999999999999999999999999999999998888887776652 2223456667778899
Q ss_pred HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc
Q psy3615 106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL 157 (211)
Q Consensus 106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~ 157 (211)
|++.+...+.......+..|+++|+++.+ .+....+|..+|+.+.+.+.++.
T Consensus 359 g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 359 GFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888788888888899999999999 77889999999999999887743
No 176
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.15 E-value=1.5e-10 Score=105.52 Aligned_cols=149 Identities=14% Similarity=0.041 Sum_probs=116.8
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh--------------
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA-------------- 90 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~-------------- 90 (211)
...+.++.+.+|.+..+.+++.+.+.++.++++++.|++.|+.++++.+..+.++.++..+...+.
T Consensus 246 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 325 (1140)
T PRK06814 246 SQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSI 325 (1140)
T ss_pred HHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccch
Confidence 344555667789999999999999999999999999999998887777766666665554433321
Q ss_pred ----hcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc-ccCchHHHH
Q psy3615 91 ----AYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID-TLGWEAAFY 164 (211)
Q Consensus 91 ----~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-~~gw~~~~~ 164 (211)
..++.+.+++..++.|++.+...+...+++.+..|+++||+++| .++...+|..+++++.+.+.+ ..++...++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~ 405 (1140)
T PRK06814 326 LVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIIL 405 (1140)
T ss_pred hhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 11456777788899999999999999999999999999999999 888899999999999988874 345666666
Q ss_pred HHHHHHHHH
Q psy3615 165 VTGALGVVW 173 (211)
Q Consensus 165 ~~~~~~~~~ 173 (211)
+.+.+.++.
T Consensus 406 ~~~~~~~~~ 414 (1140)
T PRK06814 406 FIALANLIV 414 (1140)
T ss_pred HHHHHHHHH
Confidence 555543433
No 177
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.14 E-value=6e-10 Score=90.16 Aligned_cols=134 Identities=7% Similarity=-0.063 Sum_probs=91.1
Q ss_pred CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhh
Q psy3615 31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGG 110 (211)
Q Consensus 31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g 110 (211)
.++++|.++.+.+...+...++..++.++.+++.||+|+|+.+.++..+..++.+...+. ++.+..+....+.+.+.+
T Consensus 230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~~ 307 (392)
T PRK10473 230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS--PSHAVSLFGITLICAGFS 307 (392)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999988888877776655 333333333344444433
Q ss_pred cchHHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHH
Q psy3615 111 LAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALG 170 (211)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~ 170 (211)
...+. ....+..|.++|+.. ......++..+++.+++++.++.|+.......+.+.
T Consensus 308 ~~~~~--~~~~~~~~~~~~~g~--~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~ 363 (392)
T PRK10473 308 VGFGV--AMSQALGPFSLRAGV--ASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI 363 (392)
T ss_pred HHhHH--HHHHHhccCcccccH--HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 33332 233444455555422 334455677777888888888778765555544433
No 178
>KOG0569|consensus
Probab=99.14 E-value=6.9e-10 Score=91.05 Aligned_cols=158 Identities=9% Similarity=-0.031 Sum_probs=117.4
Q ss_pred CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh--cccH--H---HHHHH
Q psy3615 29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA--YWDY--K---AMAGL 101 (211)
Q Consensus 29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~--~~~~--~---~~~~~ 101 (211)
.++-++-|++..+..+......+...+..+.+.++.||+|||+.++.+..+..+..+++.... .... | ..+++
T Consensus 294 t~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~ 373 (485)
T KOG0569|consen 294 TSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAA 373 (485)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 345566789999999999999999999999999999999999999999999988877665432 1111 1 12334
Q ss_pred HHHHHhhhhc-chHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615 102 RIVQGVIGGL-AWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 102 ~~l~G~~~g~-~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
.++..+..+. ..|...-+.+|.+|.+.|..+++ ......+...+-......+.+..|- ..|....+.+.+..+..++
T Consensus 374 ~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~ 452 (485)
T KOG0569|consen 374 IFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYR 452 (485)
T ss_pred HHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHH
Confidence 4444444333 46788899999999999999999 6666666666555555555565564 6777778888888888888
Q ss_pred hhcCCCCC
Q psy3615 180 VVYDTPDQ 187 (211)
Q Consensus 180 ~~~~~~~~ 187 (211)
.+||++.+
T Consensus 453 ~lPETkgr 460 (485)
T KOG0569|consen 453 YLPETKGR 460 (485)
T ss_pred hCcccCCC
Confidence 89987543
No 179
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.14 E-value=1.5e-09 Score=88.06 Aligned_cols=150 Identities=14% Similarity=0.158 Sum_probs=114.4
Q ss_pred cccc-CCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH----HHHHHHHh
Q psy3615 33 SLFH-WDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA----GLRIVQGV 107 (211)
Q Consensus 33 ~~~~-~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~l~G~ 107 (211)
++.| .+....+.+.++..+.-.+.....+++..|+|.|+++.++.+..++=..+.+...+ +.+... ....+.|+
T Consensus 235 ~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~-~~~~~~~~~~l~q~lhG~ 313 (400)
T PF03825_consen 235 QELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD-PWPFIVALQLLGQLLHGL 313 (400)
T ss_pred HHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHhhhhH
Confidence 3444 56667777778888888899999999999999999999999999887777665522 223322 23456899
Q ss_pred hhhcchHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcccCchH------HHHHHHHHHHHHHHHHHh
Q psy3615 108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDTLGWEA------AFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~~gw~~------~~~~~~~~~~~~~~~~~~ 179 (211)
..+..+.+...++.+..|++.|+++.+ .. ....+|..+|..++|++.|+.|-+. .+.+.+++.++..++.++
T Consensus 314 tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 314 TFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 55 6789999999999999999876443 444555554444444444
Q ss_pred hhcC
Q psy3615 180 VVYD 183 (211)
Q Consensus 180 ~~~~ 183 (211)
..+|
T Consensus 394 ~fk~ 397 (400)
T PF03825_consen 394 LFKP 397 (400)
T ss_pred hccC
Confidence 4443
No 180
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.13 E-value=2.5e-10 Score=91.21 Aligned_cols=125 Identities=15% Similarity=0.042 Sum_probs=97.3
Q ss_pred CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh-CCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhh
Q psy3615 31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL-GTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIG 109 (211)
Q Consensus 31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~ 109 (211)
+.++.|.+..+.+.+.+...++..+++++.|++.||+ +||+.+.++..+.+++.+...+. ++.... ...++.|++.
T Consensus 223 ~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~l~g~~~ 299 (355)
T TIGR00896 223 ILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA--PMHGLW-AWALVLGLGQ 299 (355)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh--hhhHHH-HHHHHHHHhh
Confidence 3446799999999999999999999999999999999 56667777777777776655554 322222 2456789999
Q ss_pred hcchHHHHHHhhhccC-CCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC
Q psy3615 110 GLAWPSMHHLVAHWIP-PTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG 158 (211)
Q Consensus 110 g~~~~~~~~~~~~~~~-~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g 158 (211)
+..++...+.+.+..+ +++++...+ .+....++..++|.+.|++.++.|
T Consensus 300 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 300 GGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred hhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888887777765554 456788888 677888888999999999998776
No 181
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.13 E-value=2.3e-10 Score=95.56 Aligned_cols=128 Identities=13% Similarity=0.091 Sum_probs=108.7
Q ss_pred cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh-hcccHHHHHHHHHHHH
Q psy3615 28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA-AYWDYKAMAGLRIVQG 106 (211)
Q Consensus 28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~G 106 (211)
+.++++.+|.|+.+.+.......++..++.++.|++.||+|+|+.+..+.++.+++..+.... ..++.+......++.|
T Consensus 283 ~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G 362 (495)
T PRK14995 283 AQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLG 362 (495)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 445567789999999999999999999999999999999999999998888887776655432 1234556667788999
Q ss_pred hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc
Q psy3615 107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID 155 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~ 155 (211)
++.|...+.....+.+..|+++++.+.+ .+...++|..+|+.+.+.+.+
T Consensus 363 ~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 363 FSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888999999999999999 779999999999999998865
No 182
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.12 E-value=1.1e-09 Score=88.10 Aligned_cols=132 Identities=10% Similarity=0.094 Sum_probs=97.2
Q ss_pred CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc---ccHHHHHHHHHHHH
Q psy3615 30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY---WDYKAMAGLRIVQG 106 (211)
Q Consensus 30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~l~G 106 (211)
.+.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++..++..... ++...++...++.|
T Consensus 232 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 311 (385)
T TIGR00710 232 VYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVG 311 (385)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999998888777776665544311 22344555677888
Q ss_pred hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcc-hhhhhhhhhhhhhhhcccCchHHH
Q psy3615 107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGS-SFGVALSYPLCGVVIDTLGWEAAF 163 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~-~~g~~~~~~~~~~l~~~~gw~~~~ 163 (211)
++.+...+.......|..| ++|+++.+ .+... ..|...++.++ .+.+..+|...+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~~~~~~ 368 (385)
T TIGR00710 312 IGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTAWPMSL 368 (385)
T ss_pred HHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccChHHHHH
Confidence 8888888888888888886 67999999 66444 44555555544 444444444333
No 183
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.11 E-value=4.9e-11 Score=97.76 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=120.2
Q ss_pred cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHH----HhCCcchh-HHHHHHHHHHHHHhhhh-h-cc----c
Q psy3615 26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLAR----SLGTKVVF-GVSNLAMFLISFALPAA-A-YW----D 94 (211)
Q Consensus 26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~G~r~~~-~~~~~~~~i~~~~~~~~-~-~~----~ 94 (211)
+..+++.+.+|+++...|.+..+..+..++..++.|.++| |+||||.. +++....+++..++... . .. .
T Consensus 23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~ 102 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK 102 (428)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence 4566778889999999999999999999999999999999 89966555 56777777777766543 1 01 1
Q ss_pred HHHHHHHHHHHHhhhhcchHHHHHHhhhccCC-CchhhHhh-hhhcchhhhhhhhhhhhhhhccc-------CchHHHHH
Q psy3615 95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPP-TERSQFIT-SYLGSSFGVALSYPLCGVVIDTL-------GWEAAFYV 165 (211)
Q Consensus 95 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~-------gw~~~~~~ 165 (211)
...+.+..++..++.........++..|..+. ++|.+..+ -..+..+|..+...+...+.+.. +|++..++
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v 182 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV 182 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence 23456677777888888888899999999974 68998888 65667777765555555444321 68888888
Q ss_pred HHHHHHHHHHHHHhhhcC
Q psy3615 166 TGALGVVWWVVWMIVVYD 183 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~ 183 (211)
.+++.++..++..+..+|
T Consensus 183 ~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 183 LAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHhhhhhheeee
Confidence 888888877777777776
No 184
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.08 E-value=4.5e-10 Score=93.00 Aligned_cols=154 Identities=11% Similarity=0.067 Sum_probs=102.0
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhH--------HHHHHHHHHHHHhhhhh-cccH
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFG--------VSNLAMFLISFALPAAA-YWDY 95 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~--------~~~~~~~i~~~~~~~~~-~~~~ 95 (211)
...+.++.+.+|.+..+.++..++..++..++.++.|+++||+++|+... .+............... ..+.
T Consensus 282 ~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (465)
T TIGR00894 282 TYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAF 361 (465)
T ss_pred HHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 34456667788999999999999999999999999999999987654321 11111111111111111 1233
Q ss_pred HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc---CchHHHHHHHHHHH
Q psy3615 96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL---GWEAAFYVTGALGV 171 (211)
Q Consensus 96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~---gw~~~~~~~~~~~~ 171 (211)
...++.-.+.+.+.+...+.......+..|+ .+|..++ .+....+|..++|.+.+.+.+.. +|+..|.+.+...+
T Consensus 362 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~ 440 (465)
T TIGR00894 362 YLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNI 440 (465)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHH
Confidence 3334444444555554455555555566664 7999999 77888999999999999887653 38888888887777
Q ss_pred HHHHHHHh
Q psy3615 172 VWWVVWMI 179 (211)
Q Consensus 172 ~~~~~~~~ 179 (211)
+..++..+
T Consensus 441 i~~i~~~~ 448 (465)
T TIGR00894 441 LCVIFYLI 448 (465)
T ss_pred HHHHHeee
Confidence 76655543
No 185
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.08 E-value=4.4e-09 Score=86.40 Aligned_cols=136 Identities=15% Similarity=0.044 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh----cccHHHHHHHHHHHHhhhhcchHHHHHHhh
Q psy3615 46 LGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA----YWDYKAMAGLRIVQGVIGGLAWPSMHHLVA 121 (211)
Q Consensus 46 ~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~ 121 (211)
..+..+...+.++++|+++||+|+|+++.++.+...+......... ..+++.+.+..+...++.|.....+..++.
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip 371 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA 371 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence 4445677888999999999999999999999887777664432221 124566666555555666666667777777
Q ss_pred hccCC---------------------CchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHH
Q psy3615 122 HWIPP---------------------TERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 122 ~~~~~---------------------~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~ 178 (211)
+.+|+ ++-|.+.| ......+|+.+-|.+.+...+..| +...|+...+..+++..+.+
T Consensus 372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 77764 14556666 668888888899988888877655 77888888888888777776
Q ss_pred hhh
Q psy3615 179 IVV 181 (211)
Q Consensus 179 ~~~ 181 (211)
.+.
T Consensus 452 ~~y 454 (462)
T PRK15034 452 LVY 454 (462)
T ss_pred HHh
Confidence 654
No 186
>KOG3762|consensus
Probab=99.08 E-value=4.4e-10 Score=91.68 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=128.9
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615 32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL 111 (211)
Q Consensus 32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 111 (211)
.++.+..+...|........+-.+.-++.+++.+|+|+-+++.+++.++++=.+..+.. +|.|..+...+++|+..+.
T Consensus 398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--~n~W~vLPieilqgit~al 475 (618)
T KOG3762|consen 398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--QNPWMVLPIEILQGITHAL 475 (618)
T ss_pred HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--cCchheeeHHHHHHHHHHH
Confidence 35566666677777777777888888999999999999999999999999988888777 9999999999999999999
Q ss_pred chHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615 112 AWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 112 ~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
.|.+..++++...|++.|.++.+ .. ....+|-.+|.+++|.+.++++-|..|..+++.+++.+++...
T Consensus 476 iWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 476 IWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 66 8889999999999999999999999999988888776655443
No 187
>KOG4686|consensus
Probab=99.05 E-value=1.3e-09 Score=82.76 Aligned_cols=126 Identities=14% Similarity=0.063 Sum_probs=103.0
Q ss_pred CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHH-HHHhhhhhcccHHHHHHHHHHHHh
Q psy3615 29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLI-SFALPAAAYWDYKAMAGLRIVQGV 107 (211)
Q Consensus 29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~l~G~ 107 (211)
...++.+|+|+...+.+.+......++.+++.|.++||+|++...+.+..+..+. .....+. .+.-+....+.|+
T Consensus 289 ~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft----~lsPy~~m~~lGL 364 (459)
T KOG4686|consen 289 MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT----FLSPYTSMTFLGL 364 (459)
T ss_pred HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh----hccHHHHHHHHhh
Confidence 3457899999999999999999999999999999999999998887766665553 3333222 3344566778888
Q ss_pred hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC
Q psy3615 108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG 158 (211)
Q Consensus 108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g 158 (211)
+.+..-......++...|.++.|++.+ .+...++|-.+.|++++.+.+..|
T Consensus 365 sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 365 SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 887766667788888899999999999 999999999999999999998765
No 188
>PRK11043 putative transporter; Provisional
Probab=99.05 E-value=2.8e-09 Score=86.54 Aligned_cols=131 Identities=8% Similarity=-0.114 Sum_probs=96.5
Q ss_pred CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhh---hhhcccHHHHHHHHHHHH
Q psy3615 30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALP---AAAYWDYKAMAGLRIVQG 106 (211)
Q Consensus 30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~l~G 106 (211)
.+.+++|.++.+.++......++..++....+++.||+|+|+.+.......+++.+... ....++.+.++....+.|
T Consensus 228 ~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (401)
T PRK11043 228 FILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMA 307 (401)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 34466899999999988888889999999999999999999877666555544433222 111234555556667788
Q ss_pred hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchH
Q psy3615 107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEA 161 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~ 161 (211)
++.+..++.......+..| ++++++.+ .+.....+...++.+.+.+.+......
T Consensus 308 ~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 308 AANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence 8888888888888777776 57999999 777777777888888888877543333
No 189
>PRK09669 putative symporter YagG; Provisional
Probab=99.04 E-value=1.3e-08 Score=83.83 Aligned_cols=120 Identities=12% Similarity=0.109 Sum_probs=90.5
Q ss_pred hhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHH
Q psy3615 40 NVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHL 119 (211)
Q Consensus 40 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~ 119 (211)
+..+.+.....+...++.++++++.||+|+|+.+.++.+..++......+...++.+.+++..++.|++.+...+...++
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777888899999999999999999887766654433322222466777888889999999999999999
Q ss_pred hhhccCCC-------chhhHhh-hhhcchhhhhhhhhhhhhhhcccCc
Q psy3615 120 VAHWIPPT-------ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGW 159 (211)
Q Consensus 120 ~~~~~~~~-------~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw 159 (211)
++|..+.+ ..|...+ ......+|..+++.+++.+.+..|+
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99988622 2344556 5577889999999999998877665
No 190
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.04 E-value=4e-09 Score=84.76 Aligned_cols=122 Identities=9% Similarity=-0.037 Sum_probs=85.1
Q ss_pred CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh--hcccHHHHHHHHHHHHh
Q psy3615 30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA--AYWDYKAMAGLRIVQGV 107 (211)
Q Consensus 30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~G~ 107 (211)
...+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..+..+..... ...+.+...+...+.+.
T Consensus 220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (377)
T PRK11102 220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG 299 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3456689999999999999999999999999999999999999988877654433322211 11234444444444454
Q ss_pred hhhcchHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhh
Q psy3615 108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGV 152 (211)
Q Consensus 108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~ 152 (211)
+.+.........+.|..| ++++++.+ .. ....+|..+++.+++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 300 CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555556667777766 78999998 44 4456777777766543
No 191
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.02 E-value=2.6e-09 Score=88.60 Aligned_cols=126 Identities=16% Similarity=0.075 Sum_probs=107.2
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh--------cccHHHHHHHHHH
Q psy3615 33 SLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA--------YWDYKAMAGLRIV 104 (211)
Q Consensus 33 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~l 104 (211)
+.+|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+...+.. .++.+......++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 56899999999999999999999999999999999999999999999888775532110 0223345566778
Q ss_pred HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC
Q psy3615 105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG 158 (211)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g 158 (211)
.+++.+..+.....++++..|++++++..+ .....++|..+++.+++.+.++.|
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 888888888899999999999999999999 778889999999999999988776
No 192
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.02 E-value=8.8e-09 Score=85.60 Aligned_cols=122 Identities=19% Similarity=0.108 Sum_probs=93.0
Q ss_pred CchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh---hhcccHHHHHHHHHHHHhhhhcchH
Q psy3615 38 DSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA---AAYWDYKAMAGLRIVQGVIGGLAWP 114 (211)
Q Consensus 38 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~l~G~~~g~~~~ 114 (211)
+....+.+.+...++..++.++++++.||+|+|+.+.++..+..++.+...+ ...++.+.+++..++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 5556677777777888999999999999999999999888776665544432 1124566677777888999998888
Q ss_pred HHHHHhhhccC-------CCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCc
Q psy3615 115 SMHHLVAHWIP-------PTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGW 159 (211)
Q Consensus 115 ~~~~~~~~~~~-------~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw 159 (211)
...++++|..+ +++.|...+ ......+|..+++.+.+++.+..|+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88999999865 223344666 5588889999999999988776554
No 193
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.99 E-value=2e-09 Score=85.34 Aligned_cols=119 Identities=14% Similarity=0.150 Sum_probs=101.2
Q ss_pred CCCcccccCC-chhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc-ccHHHHHHHHHHHH
Q psy3615 29 GDSGSLFHWD-SNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY-WDYKAMAGLRIVQG 106 (211)
Q Consensus 29 ~~i~~~~~~s-~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~l~G 106 (211)
.++.+++|.+ ..+.+.+.+...+...++.++.|++.||+++|+..........+..+...+... ++....+...++.|
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 310 (352)
T PF07690_consen 231 LYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIG 310 (352)
T ss_dssp HHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHH
T ss_pred hhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3458889999 789999999999999999999999999999988888777777776665554421 34566777888899
Q ss_pred hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhh
Q psy3615 107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSY 147 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~ 147 (211)
++.+...+....++.+..|+++|+++.+ .....++|..++|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 311 FGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999 8899999998886
No 194
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.99 E-value=1.2e-09 Score=87.31 Aligned_cols=111 Identities=12% Similarity=-0.047 Sum_probs=88.3
Q ss_pred cCCCcccccCCchhhHHHHHHHH-HHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh-c--------ccHHH
Q psy3615 28 DGDSGSLFHWDSNVQNLVLGSFF-WLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA-Y--------WDYKA 97 (211)
Q Consensus 28 ~~~i~~~~~~s~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~-~--------~~~~~ 97 (211)
++++. ++|++.++.+.+..... ++..++.+++|++.||+|+|+.+.++.++.++...+..+.. . ++.+.
T Consensus 233 ~~~l~-~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (356)
T TIGR00901 233 TLFLL-DMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLM 311 (356)
T ss_pred HHHHH-HcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHH
Confidence 34334 48999999998887766 57789999999999999999999888888777665444321 1 23566
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcc
Q psy3615 98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGS 139 (211)
Q Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~ 139 (211)
+....++.+++.+...+...+++.|.+|+++||+.++ .+...
T Consensus 312 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 312 LFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 7777888899999999999999999999999999999 55443
No 195
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.98 E-value=4.7e-09 Score=85.23 Aligned_cols=160 Identities=14% Similarity=0.091 Sum_probs=106.0
Q ss_pred ccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhC-CcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615 21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLG-TKVVFGVSNLAMFLISFALPAAAYWDYKAMA 99 (211)
Q Consensus 21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (211)
.++..+..+..-++.|+|..|+|.+.+...+...++++++|+++||.+ +|+.+.+..++.++..+..... ++++.+.
T Consensus 18 ~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~--~~f~~~~ 95 (400)
T PF03825_consen 18 YGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS--SSFWWLF 95 (400)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh--ccHHHHH
Confidence 333434444455678899999999999999999999999999999986 5777767666666665555555 6788888
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhh-hhhhhcccC---chHHHHHHHHHHHHHH
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPL-CGVVIDTLG---WEAAFYVTGALGVVWW 174 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~-~~~l~~~~g---w~~~~~~~~~~~~~~~ 174 (211)
+..++..+......|...++..+...+ ++.-.| .-...++|..++... ...+....+ ....+++.+...++..
T Consensus 96 ~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~ 173 (400)
T PF03825_consen 96 VIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLA 173 (400)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH
Confidence 888888888888888888888888763 344445 445566666555333 222332222 2334555554444333
Q ss_pred HHHHhhhcCCC
Q psy3615 175 VVWMIVVYDTP 185 (211)
Q Consensus 175 ~~~~~~~~~~~ 185 (211)
... +.+|+.|
T Consensus 174 ~~~-l~lp~~~ 183 (400)
T PF03825_consen 174 GFA-LFLPKTP 183 (400)
T ss_pred HHH-HhCCCCc
Confidence 332 3356655
No 196
>KOG0253|consensus
Probab=98.97 E-value=1.2e-09 Score=85.65 Aligned_cols=128 Identities=16% Similarity=0.107 Sum_probs=95.6
Q ss_pred HHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCc
Q psy3615 49 FFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTE 128 (211)
Q Consensus 49 ~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~ 128 (211)
..+.-+.+.++.+++.||+|||+++....+++++..++.... .+.....+.-+..-+..+..+.+.+.+..|.+|...
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c--~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTav 467 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC--KTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAV 467 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh--cCcchhHHHHHHHHHHHhchheEEEEecCcccchhh
Confidence 455667888999999999999999999999999988877655 332233333333334444455667889999999999
Q ss_pred hhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615 129 RSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIV 180 (211)
Q Consensus 129 r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~ 180 (211)
|+.+.| -.....+|+++.|.++ +....+-..+..+++.+.++..+..+++
T Consensus 468 RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcff 518 (528)
T KOG0253|consen 468 RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFF 518 (528)
T ss_pred hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheee
Confidence 999999 7799999999999998 3332344456677777777777766653
No 197
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.96 E-value=1.2e-08 Score=87.39 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=122.0
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH-hCCcchhHHHHHHHHHHHHHhhhhhcc------cHHH
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS-LGTKVVFGVSNLAMFLISFALPAAAYW------DYKA 97 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~i~~~~~~~~~~~------~~~~ 97 (211)
..+..++.+.+|++......+...+....-+...++|+++|+ +|+++.++++.++..++..+..+...+ ....
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~ 87 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL 87 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence 334445566789999999888888888889999999999995 799999999999999988877654211 1223
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhccCCCc---hhhHhh-hhhcchhhhhhhhhhhhhhhcc-------cCchHHHHHH
Q psy3615 98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTE---RSQFIT-SYLGSSFGVALSYPLCGVVIDT-------LGWEAAFYVT 166 (211)
Q Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~---r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-------~gw~~~~~~~ 166 (211)
.+++-.+..+|.|..-++..+...|-+++++ |.+... ++...++|..+++++..++.+. .+|...|.+.
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~ 167 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP 167 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence 5566777788899999999999999987643 566677 7789999999999999888744 3699999998
Q ss_pred HHHHHHHHHHHHh
Q psy3615 167 GALGVVWWVVWMI 179 (211)
Q Consensus 167 ~~~~~~~~~~~~~ 179 (211)
++..++..++...
T Consensus 168 ~i~m~ia~lvf~~ 180 (654)
T TIGR00926 168 AILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777665544
No 198
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.93 E-value=1.1e-08 Score=78.66 Aligned_cols=144 Identities=28% Similarity=0.413 Sum_probs=110.4
Q ss_pred CCCcccccCCc--hhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHH
Q psy3615 29 GDSGSLFHWDS--NVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQG 106 (211)
Q Consensus 29 ~~i~~~~~~s~--~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G 106 (211)
+.+..+++.+. ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.+...+...++.+.+++.|++.|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 105 (338)
T COG0477 26 PLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQG 105 (338)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 33444455444 4789999999999999999999999999999888888776555555555551124788899999999
Q ss_pred hhhhcchHHHHHHhhhccCC-CchhhHhh-hhh-cchhhhhhhhhhhhhhhcc--cCchHHHHHHHHHHHH
Q psy3615 107 VIGGLAWPSMHHLVAHWIPP-TERSQFIT-SYL-GSSFGVALSYPLCGVVIDT--LGWEAAFYVTGALGVV 172 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~~-~~r~~~~~-~~~-~~~~g~~~~~~~~~~l~~~--~gw~~~~~~~~~~~~~ 172 (211)
++.+...+....++.++.|+ ++|+...+ ... ...+|..+++.+++.+... .+|+..|.........
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 106 LGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred hhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999999999999997 67888888 665 5778888888777766654 5788866666555433
No 199
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.91 E-value=7.9e-10 Score=89.02 Aligned_cols=156 Identities=12% Similarity=0.060 Sum_probs=92.1
Q ss_pred cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHH--HHHHh-hhh--hcccH-HHHH
Q psy3615 26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFL--ISFAL-PAA--AYWDY-KAMA 99 (211)
Q Consensus 26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i--~~~~~-~~~--~~~~~-~~~~ 99 (211)
..+..+.++.|+|.+++|.+.++..+...+.+++.|.++||+|.||-+++......+ +.+.. .+. ...|. ...+
T Consensus 29 F~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~i 108 (412)
T PF01306_consen 29 FFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAI 108 (412)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHH
T ss_pred HHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677899999999999999999999999999999999987776654433322 21111 111 01222 2223
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
++.+..|+......+..-+++.+.. ++.+.-.| .-...++|.+++..++|.+.+. +-+..||+.....++..++.+
T Consensus 109 ig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~ 185 (412)
T PF01306_consen 109 IGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLL 185 (412)
T ss_dssp HTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555555543 23344445 4577888999999999998873 445677766555555544444
Q ss_pred hhhcCC
Q psy3615 179 IVVYDT 184 (211)
Q Consensus 179 ~~~~~~ 184 (211)
+..|+.
T Consensus 186 ~~~~~~ 191 (412)
T PF01306_consen 186 LLKPDV 191 (412)
T ss_dssp SS---S
T ss_pred HcCCcC
Confidence 444443
No 200
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.90 E-value=2e-08 Score=80.81 Aligned_cols=144 Identities=9% Similarity=-0.019 Sum_probs=93.8
Q ss_pred cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCc---chhHH-HHHHHHHHHHHhhhhhcccHHHHHHH
Q psy3615 26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTK---VVFGV-SNLAMFLISFALPAAAYWDYKAMAGL 101 (211)
Q Consensus 26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r---~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (211)
.+++.+ ++.|.+.. .+...++..+...++ .++++||..|| +.... ...+.++........ .+....++.
T Consensus 214 wlp~~L-~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ 286 (368)
T TIGR00903 214 WLEAAL-RPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE--LNRLALFAF 286 (368)
T ss_pred HHHHHH-HHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc--cccHHHHHH
Confidence 344545 44566654 455555555544444 47788877543 33232 333333333333333 334444455
Q ss_pred HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
-.+.+++....++...++.+|.+|++.|++++| .+...++|...+|++.+.+.. +.+..|.+.+...++..+...
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 287 IGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 566677677777778899999999999999999 889999999999999887774 667778877777766665543
No 201
>PRK11462 putative transporter; Provisional
Probab=98.89 E-value=1.6e-08 Score=83.83 Aligned_cols=160 Identities=12% Similarity=0.026 Sum_probs=113.6
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH----hCCcchh-HHHHHHHHHHHHHhhhhhccc----H
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS----LGTKVVF-GVSNLAMFLISFALPAAAYWD----Y 95 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~G~r~~~-~~~~~~~~i~~~~~~~~~~~~----~ 95 (211)
.++..++.+..|+++...|.+..+.-+..++..|+.|.++|| +||||.. +++.+..++..+++......+ .
T Consensus 30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~ 109 (460)
T PRK11462 30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKM 109 (460)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 345566778899999999999999999999999999999996 6876554 567677777766654432111 3
Q ss_pred HHHHHHHHHHHhhhhcchHHHHHHhhhccC-CCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-------cCchHHHHHH
Q psy3615 96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIP-PTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-------LGWEAAFYVT 166 (211)
Q Consensus 96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-------~gw~~~~~~~ 166 (211)
..+.+..++..++.........++..|..+ +++|.+..+ ...+..+|..+++.+...+.+. .+|+....+.
T Consensus 110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~ 189 (460)
T PRK11462 110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVL 189 (460)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 445566677788888877888888888876 678999999 6677777776666665443332 2567666666
Q ss_pred HHHHHHHHHHHHhhhcCC
Q psy3615 167 GALGVVWWVVWMIVVYDT 184 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~ 184 (211)
+++.+++..+.+...+|.
T Consensus 190 ~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 190 SVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHHHHHHHHhcceec
Confidence 666655555544444444
No 202
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.84 E-value=8.2e-08 Score=79.90 Aligned_cols=141 Identities=13% Similarity=-0.011 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHHHhCC-----cchh--HHHHHHHHHHHHHhhhh-------hcccHHHHHHHHHHHHh
Q psy3615 42 QNLVLGSFFWLHWSTQIPGGVLARSLGT-----KVVF--GVSNLAMFLISFALPAA-------AYWDYKAMAGLRIVQGV 107 (211)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~-----r~~~--~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~l~G~ 107 (211)
.+++.+...+...+.+++..++..|.+| +... .+|.++.+++.....+. ...++++++...++.++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 5688888888888888876654444443 3433 67788887777666531 12578899999999999
Q ss_pred hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhc
Q psy3615 108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVY 182 (211)
Q Consensus 108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~ 182 (211)
|+....|...+++.+..|++.||+.++ ......+|..+++.+.....+..+|.+.|...+...++..++.++..|
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 779999999999888887777678888888888777776666555443
No 203
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.84 E-value=6.6e-08 Score=75.83 Aligned_cols=148 Identities=14% Similarity=0.040 Sum_probs=115.7
Q ss_pred CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh-CCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615 29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL-GTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGV 107 (211)
Q Consensus 29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~ 107 (211)
|.+-.|-|+|..+.|+..+...+......+....+.+|. ++|+......+++.++.+.+.+...++++.. -++.|+
T Consensus 232 P~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw---~~llG~ 308 (395)
T COG2807 232 PAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW---ALLLGL 308 (395)
T ss_pred HHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHhC
Confidence 446678899999999999999999999999999999965 5777777788888888877777633332222 489999
Q ss_pred hhhcchHHHHHHhhhccCCCchhhHhh--hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHHh
Q psy3615 108 IGGLAWPSMHHLVAHWIPPTERSQFIT--SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~ 179 (211)
+.|..++....++.+..+..+.....+ .+....+=..+||.+.|++.|..| |+..++......+...+..+.
T Consensus 309 G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 309 GQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred ccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998877655554444 556666667889999999999865 888887777766666555544
No 204
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.82 E-value=3.9e-08 Score=80.72 Aligned_cols=125 Identities=16% Similarity=0.137 Sum_probs=104.7
Q ss_pred cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcch
Q psy3615 34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAW 113 (211)
Q Consensus 34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 113 (211)
.+|.+ +..+.+.....++..++.+++++++||+|+|+++..+.++.+++.++..+...++.+.+++..++.|++.+..+
T Consensus 255 vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~ 333 (428)
T PF13347_consen 255 VLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFF 333 (428)
T ss_pred HhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccc
Confidence 34433 56788888899999999999999999999999999999999999888877732478999999999999999999
Q ss_pred HHHHHHhhhccCC-------CchhhHhh-hhhcchhhhhhhhhhhhhhhcccCc
Q psy3615 114 PSMHHLVAHWIPP-------TERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGW 159 (211)
Q Consensus 114 ~~~~~~~~~~~~~-------~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw 159 (211)
+...++++|..+. ++.|...+ ......++..+++.+.+.+.+..|+
T Consensus 334 ~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 334 VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 9999999998873 33577777 6688889999999988888765443
No 205
>PRK11462 putative transporter; Provisional
Probab=98.81 E-value=1e-07 Score=78.95 Aligned_cols=121 Identities=17% Similarity=0.114 Sum_probs=79.8
Q ss_pred chhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHH
Q psy3615 39 SNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHH 118 (211)
Q Consensus 39 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~ 118 (211)
++..+.+.+.+.++.+++.++++++.||+|+|+++..+..+.++..++..+....+.+.+++.-++.|++.+...+...+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888899999999999999999987765554444333332321222333444556677777766666677
Q ss_pred HhhhccCC-----Cch--hhHhh-hhhcchhhhhhhhhhhhhhhcccCc
Q psy3615 119 LVAHWIPP-----TER--SQFIT-SYLGSSFGVALSYPLCGVVIDTLGW 159 (211)
Q Consensus 119 ~~~~~~~~-----~~r--~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw 159 (211)
++.|..+- .+| |...+ ......+|..+++.+.+.+.+..|+
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77777652 233 44445 4577888888888888887765444
No 206
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.81 E-value=2.6e-08 Score=81.30 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=122.7
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH----hCC-cchhHHHHHHHHHHHHHhhhhhc----ccH
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS----LGT-KVVFGVSNLAMFLISFALPAAAY----WDY 95 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~G~-r~~~~~~~~~~~i~~~~~~~~~~----~~~ 95 (211)
.++.-+..+..|+++...|.+..+.-+..++..|+.|.+.|| +|| |+-++++.+-+++...++....+ .+.
T Consensus 33 ~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~ 112 (467)
T COG2211 33 LYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKL 112 (467)
T ss_pred HHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcch
Confidence 344556688899999999999999999999999999999995 676 45566777888888887776632 235
Q ss_pred HHHHHHHHHHHhhhhcchHHHHHHhhhccC-CCchhhHhh-hhhcchhhhhhhhhhhhhhhc-------ccCchHHHHHH
Q psy3615 96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIP-PTERSQFIT-SYLGSSFGVALSYPLCGVVID-------TLGWEAAFYVT 166 (211)
Q Consensus 96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-------~~gw~~~~~~~ 166 (211)
....+...+.+++.........++..+..+ ++||.+..+ -..+..+|..+...+...+.. ..||+..-++.
T Consensus 113 ~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~ 192 (467)
T COG2211 113 IYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVL 192 (467)
T ss_pred HHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHH
Confidence 566778899999999988888888888875 468998888 667777775555444444332 24788888888
Q ss_pred HHHHHHHHHHHHhhhcCCCC
Q psy3615 167 GALGVVWWVVWMIVVYDTPD 186 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~ 186 (211)
+++..+..+++++..+|...
T Consensus 193 ~vi~~i~~l~~~~~v~ER~~ 212 (467)
T COG2211 193 GVIGVILLLFCFFNVKERVV 212 (467)
T ss_pred HHHHHHHHHHHHHHhhcccC
Confidence 88887777777776666544
No 207
>KOG2816|consensus
Probab=98.80 E-value=5.6e-08 Score=80.02 Aligned_cols=133 Identities=19% Similarity=0.186 Sum_probs=109.8
Q ss_pred HHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhh--hhcchHHHHHHhhhccC
Q psy3615 48 SFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVI--GGLAWPSMHHLVAHWIP 125 (211)
Q Consensus 48 ~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~--~g~~~~~~~~~~~~~~~ 125 (211)
...+...+.+++.|.++||+|||..+.+..+...+..+...+. .+|.++ +.++. .+.......+++++...
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~---~~~~~~----~~~l~g~~~~~~s~~~a~vadis~ 142 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ---GYWFFL----LLGLSGGFSAIFSVGFAYVADISS 142 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH---HHHHhh----hcccccchhhhhhhhhhheeeccc
Confidence 3467788999999999999999999999988888877776554 344443 44442 24467788899999999
Q ss_pred CCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy3615 126 PTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQ 187 (211)
Q Consensus 126 ~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (211)
.++|....+ .......+..++|.+++.+.+..|.-..|.+..+..++..+...+..||+..+
T Consensus 143 ~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~ 205 (463)
T KOG2816|consen 143 EEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE 205 (463)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc
Confidence 999999999 88889999999999999999999999999999999888888888888876443
No 208
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.80 E-value=4.3e-08 Score=82.08 Aligned_cols=138 Identities=10% Similarity=-0.026 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHhhchhh----HHHHHhCCcchhHHHHHHHHHHHHHhhhhhc-------ccHHHHHHHHHHHHhhhh
Q psy3615 42 QNLVLGSFFWLHWSTQIPGG----VLARSLGTKVVFGVSNLAMFLISFALPAAAY-------WDYKAMAGLRIVQGVIGG 110 (211)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~g----~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~l~G~~~g 110 (211)
.+++.++..+...+..++.+ ++.||++.++.+.+|.++.+++.+....... -+.++++...++.|+++.
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 56666777766667766664 4445555557788888998888877665521 124678889999999999
Q ss_pred cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc----------ccCchHHHHHHHHHHHHHHHHHHh
Q psy3615 111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID----------TLGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~----------~~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
...|...+++.+..|++.||+.+| ++....+|..++..+.+.... ..+..+.|...+...++..++.+.
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 777767777666655542210 113567777777666554444443
No 209
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.79 E-value=7.4e-10 Score=92.91 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=3.0
Q ss_pred ccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc----------
Q psy3615 23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY---------- 92 (211)
Q Consensus 23 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~---------- 92 (211)
......+.+++.|+++..+.|++.+.+-++..+..++..++.+|..|-|.+-+|.++.+++.+++++.+.
T Consensus 21 ~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~ 100 (539)
T PF03137_consen 21 YVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEA 100 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccc
Confidence 3444566789999999999999999999999999999999999988888888999999999888775210
Q ss_pred c--------------------------------------cHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh
Q psy3615 93 W--------------------------------------DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT 134 (211)
Q Consensus 93 ~--------------------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 134 (211)
. -+..++++.++.|+|....++...+++-|..++++-+...|
T Consensus 101 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiG 180 (539)
T PF03137_consen 101 SNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIG 180 (539)
T ss_dssp ---------------------------------------------------SSS--------------------------
T ss_pred cccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchh
Confidence 0 03557788999999999999999999999999999999999
Q ss_pred -hhhcchhhhhhhhhhhhhhhcc---------------------cC-chHHHHHHHHHHHHHHHHHHhhh
Q psy3615 135 -SYLGSSFGVALSYPLCGVVIDT---------------------LG-WEAAFYVTGALGVVWWVVWMIVV 181 (211)
Q Consensus 135 -~~~~~~~g~~~~~~~~~~l~~~---------------------~g-w~~~~~~~~~~~~~~~~~~~~~~ 181 (211)
.+....+|.++|..+++.+.+. .| |+..|++.+.+.++..+..+.+-
T Consensus 181 i~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FP 250 (539)
T PF03137_consen 181 ILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFP 250 (539)
T ss_dssp ----------------------------------------------------------------------
T ss_pred hhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8899999999999888876532 12 66667777777766666555433
No 210
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.78 E-value=1.5e-07 Score=76.96 Aligned_cols=126 Identities=11% Similarity=0.070 Sum_probs=95.0
Q ss_pred CCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHH
Q psy3615 37 WDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSM 116 (211)
Q Consensus 37 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~ 116 (211)
.+....+...+.+..+..++.++++++.||+++|+++.+......+..++..+. ++... ....++.|++.+..+|..
T Consensus 266 ~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~--~~~~~-~~~l~~~glf~s~~fp~i 342 (410)
T TIGR00885 266 MTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA--GGHVG-LYCLTLCSAFMSLMFPTI 342 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--CChHH-HHHHHHHHHHHHHHHHHH
Confidence 333444555666677889999999999999999999988888888887777665 44333 566778888888899999
Q ss_pred HHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhccc------CchHHHHHH
Q psy3615 117 HHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTL------GWEAAFYVT 166 (211)
Q Consensus 117 ~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~------gw~~~~~~~ 166 (211)
.++..+..+++.+.......+ ..+|..+.|++.|++.|+. +.+..|++.
T Consensus 343 ~sl~~~~~g~~~~~~s~~l~~-~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~ 397 (410)
T TIGR00885 343 YGIALKGLGQDTKYGAAGLVM-AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP 397 (410)
T ss_pred HHHHHhhhhhhhhhhHHHHHH-HHhccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence 999999998665433333222 3399999999999999954 467777764
No 211
>KOG2563|consensus
Probab=98.78 E-value=8e-08 Score=77.26 Aligned_cols=153 Identities=12% Similarity=0.208 Sum_probs=114.2
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc----cHH--HHHHHHHHH
Q psy3615 32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW----DYK--AMAGLRIVQ 105 (211)
Q Consensus 32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~----~~~--~~~~~~~l~ 105 (211)
...|+ +.+..-|...+|++.+....+.+-|+.|++|-|..++++.+..+++..+-..+..+ .++ ....+..+.
T Consensus 72 ~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~ia 150 (480)
T KOG2563|consen 72 NSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIA 150 (480)
T ss_pred HHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHH
Confidence 44456 66677899999999999999999999999999999999999999999887665433 344 566778888
Q ss_pred HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc------CchH--HHHHHHHHHHHHHHH
Q psy3615 106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL------GWEA--AFYVTGALGVVWWVV 176 (211)
Q Consensus 106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~------gw~~--~~~~~~~~~~~~~~~ 176 (211)
+.++-........+..-||++++|..+.. -.++..+|.+++.++...+..+. .|.. .|+...++..+.+.+
T Consensus 151 a~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l 230 (480)
T KOG2563|consen 151 AAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLAL 230 (480)
T ss_pred HHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88877776666788899999999999999 66888888888888877776543 3433 344444444443344
Q ss_pred HHhhhcCCC
Q psy3615 177 WMIVVYDTP 185 (211)
Q Consensus 177 ~~~~~~~~~ 185 (211)
..+..++.|
T Consensus 231 ~~~~~~~~P 239 (480)
T KOG2563|consen 231 VLFVFTKKP 239 (480)
T ss_pred HHHhcCCCC
Confidence 444444433
No 212
>PRK09848 glucuronide transporter; Provisional
Probab=98.77 E-value=5e-08 Score=80.52 Aligned_cols=128 Identities=8% Similarity=-0.067 Sum_probs=85.5
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh----CCcchh-HHHHHHHHHHHHHhhhhh---cc--c
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL----GTKVVF-GVSNLAMFLISFALPAAA---YW--D 94 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~----G~r~~~-~~~~~~~~i~~~~~~~~~---~~--~ 94 (211)
.++..++++.+|++..+.|.+.+...+..++..++.|+++||. |||+.. .++.+...+...+..... .+ .
T Consensus 29 ~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (448)
T PRK09848 29 LFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSK 108 (448)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchH
Confidence 4455678888999999999999999999999999999999996 666654 555554544443322111 01 1
Q ss_pred HHHHHHHHHHHHhhhhcchHHHHHHhhhccCC-CchhhHhh-hhh-----cchhhhhhhhhhhhh
Q psy3615 95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPP-TERSQFIT-SYL-----GSSFGVALSYPLCGV 152 (211)
Q Consensus 95 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~-~~~-----~~~~g~~~~~~~~~~ 152 (211)
.+......++.+++.+...+...++..+..++ ++|.+..+ -.. ...++..++|.+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 109 VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred HHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23344455677888888777777777766544 57887765 322 233555666666554
No 213
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.74 E-value=2.1e-07 Score=75.42 Aligned_cols=127 Identities=9% Similarity=-0.094 Sum_probs=91.9
Q ss_pred CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHH-HHhhhhhcccHHHHHHHHHHHHhh
Q psy3615 30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLIS-FALPAAAYWDYKAMAGLRIVQGVI 108 (211)
Q Consensus 30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~l~G~~ 108 (211)
.+++.+|.+..+.++......++..++..+.+++.||++++..........+... .........+.+.+....++.|++
T Consensus 233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 312 (394)
T PRK11652 233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG 312 (394)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3345588899999999988899999999999999999983332222222222111 111111113456677778889999
Q ss_pred hhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc
Q psy3615 109 GGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL 157 (211)
Q Consensus 109 ~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~ 157 (211)
.+...+...++..+.+| +++++..+ ......+|..+++.+++.+.+..
T Consensus 313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 99999999999999887 57899988 77888999999999988876643
No 214
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.70 E-value=1.9e-07 Score=77.90 Aligned_cols=138 Identities=11% Similarity=-0.065 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHHHhCCcch-------hHHHHHHHHHHHHHhh-----hhh---cccHHHHHHHHHHHH
Q psy3615 42 QNLVLGSFFWLHWSTQIPGGVLARSLGTKVV-------FGVSNLAMFLISFALP-----AAA---YWDYKAMAGLRIVQG 106 (211)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~-------~~~~~~~~~i~~~~~~-----~~~---~~~~~~~~~~~~l~G 106 (211)
..++.+...+...+..++.+++.||+++|+. +.+|.++.+++.+... ... ..+.+.++...++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 3556666667788889999999999999974 6777777776654321 111 134677788899999
Q ss_pred hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc----------ccCchHHHHHHHHHHHHHHH
Q psy3615 107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID----------TLGWEAAFYVTGALGVVWWV 175 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~----------~~gw~~~~~~~~~~~~~~~~ 175 (211)
+|++...+...+.+.+..|++.++.+++ ++....+|..++..++..... ...+.+.|...+...++..+
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v 470 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV 470 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 888888999988887765421 01245666666666665555
Q ss_pred HHHh
Q psy3615 176 VWMI 179 (211)
Q Consensus 176 ~~~~ 179 (211)
+.+.
T Consensus 471 ~~~~ 474 (489)
T PRK10207 471 VMAL 474 (489)
T ss_pred HHHH
Confidence 5444
No 215
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.69 E-value=4e-08 Score=78.52 Aligned_cols=115 Identities=14% Similarity=-0.013 Sum_probs=84.1
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc--cHHHHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW--DYKAMAGLRIV 104 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~l 104 (211)
.+.++++.+|.++.+.+.+.+...+...++.++.|++.||+|+|+.+..+......+..+..+...+ +.+.......+
T Consensus 248 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
T TIGR00886 248 FAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVA 327 (366)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 3445567789999999999999999999999999999999999988887777666655554433222 45555555555
Q ss_pred HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhh
Q psy3615 105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFG 142 (211)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g 142 (211)
.++..|.........+.+..| +++|+.+| .....++|
T Consensus 328 ~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 328 LFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 555556556667777788877 68999999 66666655
No 216
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.67 E-value=4.2e-07 Score=72.62 Aligned_cols=132 Identities=14% Similarity=0.010 Sum_probs=98.8
Q ss_pred CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhC-----CcchhHH-HHHHHHHHHHHhhhh----hc-------c
Q psy3615 31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLG-----TKVVFGV-SNLAMFLISFALPAA----AY-------W 93 (211)
Q Consensus 31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-----~r~~~~~-~~~~~~i~~~~~~~~----~~-------~ 93 (211)
+..|+++.....+...+...+... .++..|+.+|+.+ ||..+++ |.+....+..+.+++ .. +
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 456888888888888888777654 6899999999988 7766654 455544444444332 11 1
Q ss_pred c-HH--HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHH
Q psy3615 94 D-YK--AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAF 163 (211)
Q Consensus 94 ~-~~--~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~ 163 (211)
. .+ .......+.|+|.+....+..++++|..|+++|+++.+ .+..--+|..++..+.+.+.+.+.-....
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~ 158 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLI 158 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHH
Confidence 1 12 23455677899999999999999999999999999999 88888899999999999888876643333
No 217
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.67 E-value=3e-10 Score=93.50 Aligned_cols=161 Identities=14% Similarity=0.010 Sum_probs=107.1
Q ss_pred cccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhh--h-hhccc----HH
Q psy3615 24 LFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALP--A-AAYWD----YK 96 (211)
Q Consensus 24 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~--~-~~~~~----~~ 96 (211)
.....+.+.+..+.+.. -.......+...++.+....+.||+|||++++.+....+++.+.+. . ...++ -.
T Consensus 272 ~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (451)
T PF00083_consen 272 IFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSI 349 (451)
T ss_pred ccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33445566666776665 2223344455566777778999999999999999988888776664 1 11111 11
Q ss_pred HHHHHHHHHHhhhh-cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHH
Q psy3615 97 AMAGLRIVQGVIGG-LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWW 174 (211)
Q Consensus 97 ~~~~~~~l~G~~~g-~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~ 174 (211)
..++.-.+.....+ ...+....+..|.+|.+.|.++.+ .+....++..+++.+...+.+..+-...+.+.+.++++..
T Consensus 350 ~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 429 (451)
T PF00083_consen 350 LSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAI 429 (451)
T ss_pred ccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHH
Confidence 11222222222222 234566688899999999999999 7788889989888888888776663456667677777777
Q ss_pred HHHHhhhcCCCC
Q psy3615 175 VVWMIVVYDTPD 186 (211)
Q Consensus 175 ~~~~~~~~~~~~ 186 (211)
++.+++.||+..
T Consensus 430 i~~~~~lpET~g 441 (451)
T PF00083_consen 430 IFVYFFLPETKG 441 (451)
T ss_pred hheeEEEeeCCC
Confidence 777777888753
No 218
>KOG3764|consensus
Probab=98.67 E-value=4.1e-08 Score=77.82 Aligned_cols=147 Identities=14% Similarity=0.026 Sum_probs=115.4
Q ss_pred CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhC--CcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhh
Q psy3615 31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLG--TKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVI 108 (211)
Q Consensus 31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G--~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~ 108 (211)
+.+.+..+..+.|...--..+.++++..+.|.+.||++ |-.....+.+..++......+. +++..+++-++..+++
T Consensus 297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~--~~~~~L~vp~~~l~~~ 374 (464)
T KOG3764|consen 297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA--TSIAQLWVPNFGLGFG 374 (464)
T ss_pred HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh--hhHHHHhhhhHHHHHH
Confidence 45666756668898888899999999999999999999 5444445566666666666667 8889999999999988
Q ss_pred hhcchHHHHHHhhhccCCCc------hhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615 109 GGLAWPSMHHLVAHWIPPTE------RSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 109 ~g~~~~~~~~~~~~~~~~~~------r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
.+..............+.++ -|...+ ....+++|.++||.++|.+.+..|++|.-.+.+...++-.-+..+
T Consensus 375 i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 375 IGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred HHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777676665432 345666 558899999999999999999999999999988888876655443
No 219
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.64 E-value=1.2e-06 Score=70.08 Aligned_cols=150 Identities=15% Similarity=0.059 Sum_probs=122.0
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHH-HhCCcchhHHHHHHHHHHHHHhhhhh-cccHHHHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLAR-SLGTKVVFGVSNLAMFLISFALPAAA-YWDYKAMAGLRIV 104 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-r~G~r~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~l 104 (211)
+.|+=.+.+|++..+...++.....+..++....|++.. |.++++...+++....++..+..++. ..+.+.+...-++
T Consensus 231 LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l 310 (403)
T PF03209_consen 231 LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFL 310 (403)
T ss_pred cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 456667789999999999999999999999999999887 67888888888888877766544432 2467888999999
Q ss_pred HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc----------cCchHHHHHHHHHHHHH
Q psy3615 105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT----------LGWEAAFYVTGALGVVW 173 (211)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~----------~gw~~~~~~~~~~~~~~ 173 (211)
.|++.|.......+.+.+...+++.|..+| +...+.++..++..+++.+.|. .+|...|.+.+...++.
T Consensus 311 ~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a 390 (403)
T PF03209_consen 311 LGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAA 390 (403)
T ss_pred HHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 8899999999999998887653 23555666665555554
Q ss_pred HHH
Q psy3615 174 WVV 176 (211)
Q Consensus 174 ~~~ 176 (211)
..+
T Consensus 391 ~~l 393 (403)
T PF03209_consen 391 LVL 393 (403)
T ss_pred HHH
Confidence 444
No 220
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.64 E-value=4e-07 Score=72.45 Aligned_cols=139 Identities=16% Similarity=0.214 Sum_probs=113.0
Q ss_pred CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhh
Q psy3615 31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGG 110 (211)
Q Consensus 31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g 110 (211)
+.+..|+++.+.....+.+..+.+++...+.++..|+.+.|.+....++..+.++...+. ++. .-+..-++.|+..+
T Consensus 263 ~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~--~g~-v~~~~l~~ig~F~s 339 (422)
T COG0738 263 LEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI--GGV-VALYALFLIGLFNS 339 (422)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh--cCh-HHHHHHHHHHHHhH
Confidence 344478899999999999999999999999999999999999998888877777777776 553 33456678899999
Q ss_pred cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHH
Q psy3615 111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWW 174 (211)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~ 174 (211)
..+|...+...+..| +.....+ ......+|+++-|++.|++.|+.|-...+.....+|.+..
T Consensus 340 imfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 340 IMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 999999999999998 3444455 6678888999999999999999998877774444444443
No 221
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.63 E-value=1.9e-07 Score=76.74 Aligned_cols=156 Identities=14% Similarity=0.058 Sum_probs=116.3
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhC-----CcchhHHHHHHHHHHHHHhhhhhc--ccHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLG-----TKVVFGVSNLAMFLISFALPAAAY--WDYKAMA 99 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-----~r~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~ 99 (211)
..+.+++++|+++++.....+...+-. ...++.|.++|-+. ||+.++++.++..++......... .+.....
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~ 90 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAV 90 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHH
Confidence 345678899999999888777666554 34678999999763 556666677666555554444321 2455566
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCC--chhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPT--ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV 176 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~ 176 (211)
+.-++..++........-+++.|...++ .||...+ .+....+|..++..+.|.+.+..+++..|.+.+.+..+..+.
T Consensus 91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~ 170 (433)
T PF03092_consen 91 VLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIV 170 (433)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHH
Confidence 6677778888888888888999887433 4677777 778889999999999999999999999999988887777666
Q ss_pred HHhhhcC
Q psy3615 177 WMIVVYD 183 (211)
Q Consensus 177 ~~~~~~~ 183 (211)
.++..+|
T Consensus 171 ~~~~~~e 177 (433)
T PF03092_consen 171 ALFLLEE 177 (433)
T ss_pred HHHhhhh
Confidence 6665554
No 222
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.63 E-value=6.1e-07 Score=63.07 Aligned_cols=114 Identities=7% Similarity=0.004 Sum_probs=90.5
Q ss_pred CCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHH
Q psy3615 37 WDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSM 116 (211)
Q Consensus 37 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~ 116 (211)
+++..--.-.++......+++++.+.+.+++|.|+.++++.+.+.+-..... - ++.+.++....+.|++.+..+.+.
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~--~~~~~l~~~s~l~G~~~a~lW~aq 110 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF-Y--PNSYTLYPASALLGFGAALLWTAQ 110 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-h--hhHHHHHHHHHHHhhhhHHhhHhh
Confidence 3333334445666777788888899999999999999999999987655543 2 677889999999999999999999
Q ss_pred HHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhh
Q psy3615 117 HHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV 153 (211)
Q Consensus 117 ~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l 153 (211)
..++.+..++++|++..+ .......+..+|..+...+
T Consensus 111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888 6666667767666555443
No 223
>KOG2532|consensus
Probab=98.62 E-value=5.5e-08 Score=80.30 Aligned_cols=160 Identities=9% Similarity=0.070 Sum_probs=109.9
Q ss_pred cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCc---------chhHHHHHHHHHHHHHhhhh
Q psy3615 20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTK---------VVFGVSNLAMFLISFALPAA 90 (211)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r---------~~~~~~~~~~~i~~~~~~~~ 90 (211)
....+.+.+.++.+.+|.|..+.|+..++..+.+.+..+.+|+++||.-+| ..-.++....++..+..++.
T Consensus 274 ~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~ 353 (466)
T KOG2532|consen 274 FYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT 353 (466)
T ss_pred HHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec
Confidence 334456778888999999999999999999999999999999999998653 22235555555555555555
Q ss_pred hcccHHHHHHHHHHHHhhh-hcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc---cCchHHHHH
Q psy3615 91 AYWDYKAMAGLRIVQGVIG-GLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT---LGWEAAFYV 165 (211)
Q Consensus 91 ~~~~~~~~~~~~~l~G~~~-g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~---~gw~~~~~~ 165 (211)
...+.+. .+..+....+. |...+....-..+. .+++-+..++ .+....+...++|.+.+.+.+. ..|+..|++
T Consensus 354 ~~~~~~~-a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i 431 (466)
T KOG2532|consen 354 SDEHRLL-AVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLI 431 (466)
T ss_pred CCCcchH-HHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHH
Confidence 2212211 11222222222 22223233333333 4577899999 8899999999999999999842 369999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy3615 166 TGALGVVWWVVWMIVV 181 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~ 181 (211)
.+++.++..++..++-
T Consensus 432 ~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 432 AAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHhchheeEee
Confidence 9999888776655543
No 224
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.62 E-value=3.9e-07 Score=74.57 Aligned_cols=127 Identities=18% Similarity=0.065 Sum_probs=99.2
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615 32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL 111 (211)
Q Consensus 32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 111 (211)
+..+|-++.+..+.......+..++.+++.++.+|+|+|+++.++.++..++.++..+...++.+..++..++.+++.+.
T Consensus 264 ~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~ 343 (467)
T COG2211 264 TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGI 343 (467)
T ss_pred EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhc
Confidence 34455555666677777888888889999999999999999999999999999988887555788888899999999999
Q ss_pred chHHHHHHhhhccCC-----Cch--hhHhh-hhhcchhhhhhhhhhhhhhhcccC
Q psy3615 112 AWPSMHHLVAHWIPP-----TER--SQFIT-SYLGSSFGVALSYPLCGVVIDTLG 158 (211)
Q Consensus 112 ~~~~~~~~~~~~~~~-----~~r--~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g 158 (211)
..+...++++|..+- ++| |...+ .....-+|..++..+.++.....|
T Consensus 344 ~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 344 ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred cccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999887642 223 44444 446667777888777777765543
No 225
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.57 E-value=3.8e-06 Score=69.83 Aligned_cols=146 Identities=12% Similarity=-0.006 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHH-HHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHH
Q psy3615 41 VQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMF-LISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHL 119 (211)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~ 119 (211)
..++..++..+..++..++.|-++|+-|+||.++....+.+ +...++.+...++++...+..++.-++.+......+++
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999998777765555544 45555555422334444455555557888888889999
Q ss_pred hhhccCCCch--------------------------hhHhh-hhhcchhhhhhhhhhhhhhhcc--------cCchHHHH
Q psy3615 120 VAHWIPPTER--------------------------SQFIT-SYLGSSFGVALSYPLCGVVIDT--------LGWEAAFY 164 (211)
Q Consensus 120 ~~~~~~~~~r--------------------------~~~~~-~~~~~~~g~~~~~~~~~~l~~~--------~gw~~~~~ 164 (211)
+.+..+++++ ++..+ -+....+|..+.-.+.-.+... .+.|..+.
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~ 230 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL 230 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence 9999998888 88888 6677777777665554443221 23577888
Q ss_pred HHHHHHHHHHHHHHhhhcCCCC
Q psy3615 165 VTGALGVVWWVVWMIVVYDTPD 186 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~ 186 (211)
+.++.-++..+..++..||.|+
T Consensus 231 ~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 231 IVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC
Confidence 8888877777777777777765
No 226
>KOG4686|consensus
Probab=98.52 E-value=3.6e-09 Score=80.42 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=109.0
Q ss_pred cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH-hCCcchhHHHHHHHHHHHHHhhhh-hcccHHHHHHHHH
Q psy3615 26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS-LGTKVVFGVSNLAMFLISFALPAA-AYWDYKAMAGLRI 103 (211)
Q Consensus 26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~ 103 (211)
.+..+.+.+.+++.++..++.+.|..-..+...++|++.|| +|-|..-++-++...++.+.++.. ..+.+|.+.++|+
T Consensus 65 alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF 144 (459)
T KOG4686|consen 65 ALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRF 144 (459)
T ss_pred hhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhe
Confidence 34556677788888899999999999999999999999995 788877777777777776665532 1367999999999
Q ss_pred HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc
Q psy3615 104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT 156 (211)
Q Consensus 104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~ 156 (211)
+.|+|.-..-.+.+++...||..++.+.++| ......+|...--.+.+++.+.
T Consensus 145 ~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~ 198 (459)
T KOG4686|consen 145 LFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDT 198 (459)
T ss_pred eeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence 9999988888889999999999999999999 6688899988887777777765
No 227
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.51 E-value=1.7e-06 Score=70.70 Aligned_cols=146 Identities=8% Similarity=-0.147 Sum_probs=90.1
Q ss_pred CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh---hcccHHHHHHHHHHH
Q psy3615 29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA---AYWDYKAMAGLRIVQ 105 (211)
Q Consensus 29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~ 105 (211)
..+++.+|.++.+.++.......+..++..+.+.+.++..+++.+.....+..++..+.... ..++++..++..++.
T Consensus 243 ~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~ 322 (413)
T PRK15403 243 VILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLY 322 (413)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 34566779999999999888888888888888887655444444332222222222222111 113344456778888
Q ss_pred HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615 106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV 176 (211)
Q Consensus 106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~ 176 (211)
++|.+...+......-.- ....+|++.+ .......+...++...+++.++ +-+..|...+++..+....
T Consensus 323 ~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~ 392 (413)
T PRK15403 323 AFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIVVF 392 (413)
T ss_pred HHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHH
Confidence 888888777776433221 2234788888 6666667778888888887665 5566666655554444333
No 228
>KOG0254|consensus
Probab=98.50 E-value=9.9e-07 Score=74.17 Aligned_cols=155 Identities=12% Similarity=0.041 Sum_probs=94.1
Q ss_pred CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc---------c--HHH
Q psy3615 29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW---------D--YKA 97 (211)
Q Consensus 29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~---------~--~~~ 97 (211)
+.+-+..+.+... .+...+..+...++..++..+.||+|||+.++.+...+.++.++++..... . ...
T Consensus 319 ~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (513)
T KOG0254|consen 319 TTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLA 397 (513)
T ss_pred HHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHH
Confidence 3344445544333 455556666777777788999999999999999999999988877654211 1 111
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhc-chhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHH
Q psy3615 98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLG-SSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWV 175 (211)
Q Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~-~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~ 175 (211)
+....+..........+....+.+|.+|.+.|+++.+ .... +.....+ ......+.+..++...|...+.++.+...
T Consensus 398 ~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v-~~~~~~~~~~~~~~~~f~~f~~~~~~~~~ 476 (513)
T KOG0254|consen 398 IVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI-SFFFPFITEALGIGGTFGYFGGICLLSLI 476 (513)
T ss_pred HHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 2222222222222344555678899999999999998 4433 3333333 22222333333345667777777666666
Q ss_pred -HHHhhhcCCC
Q psy3615 176 -VWMIVVYDTP 185 (211)
Q Consensus 176 -~~~~~~~~~~ 185 (211)
..++..||+.
T Consensus 477 ~fv~~~~pETk 487 (513)
T KOG0254|consen 477 IFVFFFVPETK 487 (513)
T ss_pred HHheEEcccCC
Confidence 5666677764
No 229
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.50 E-value=1.3e-07 Score=59.07 Aligned_cols=77 Identities=8% Similarity=-0.089 Sum_probs=68.7
Q ss_pred cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHH
Q psy3615 20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAM 98 (211)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 98 (211)
.|..++++.|.+++|.++|.++.+++.+...+|+.++.+...++.++..+++.+..+.+...+..+.+++. ++.+.+
T Consensus 7 gRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~--~~~~~w 83 (85)
T PF06779_consen 7 GRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT--HSFWLW 83 (85)
T ss_pred HHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH--hchHHH
Confidence 45667788999999999999999999999999999999999999999888999999999999999999887 555443
No 230
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.49 E-value=5.3e-07 Score=70.95 Aligned_cols=85 Identities=11% Similarity=0.054 Sum_probs=73.4
Q ss_pred ccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc---------------
Q psy3615 93 WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT--------------- 156 (211)
Q Consensus 93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~--------------- 156 (211)
++++.+++..++.|.|.+...+..+.++++..+++++.+.++ ...++++|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~ 87 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE 87 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence 679999999999999999999999999999999999999999 8899999999999999987732
Q ss_pred -cCchHHHHHHHHHHHHHHHHH
Q psy3615 157 -LGWEAAFYVTGALGVVWWVVW 177 (211)
Q Consensus 157 -~gw~~~~~~~~~~~~~~~~~~ 177 (211)
..|+++|++.+.+..+..++.
T Consensus 88 ~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 88 AAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 368999987766655544433
No 231
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.44 E-value=8.6e-06 Score=67.59 Aligned_cols=142 Identities=15% Similarity=0.048 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhCC-cchhHHHHHHHHHHHHHhhhhhc--cc-----------------HHHHHHHHH
Q psy3615 44 LVLGSFFWLHWSTQIPGGVLARSLGT-KVVFGVSNLAMFLISFALPAAAY--WD-----------------YKAMAGLRI 103 (211)
Q Consensus 44 ~~~~~~~~~~~i~~~~~g~l~dr~G~-r~~~~~~~~~~~i~~~~~~~~~~--~~-----------------~~~~~~~~~ 103 (211)
+....+.+...+.+++..++.+|+|+ |++..++.++.+++.....+... ++ .+..++...
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence 44555666666778888899999995 67768888888887776665421 01 266778888
Q ss_pred HHHhhhhcchHHHHHHhhhccCC--CchhhHhh-hhhcchhhhhhhhhhhhhhhcccC--chHHHHHHHHHHHHHHHHHH
Q psy3615 104 VQGVIGGLAWPSMHHLVAHWIPP--TERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG--WEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 104 l~G~~~g~~~~~~~~~~~~~~~~--~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g--w~~~~~~~~~~~~~~~~~~~ 178 (211)
+.|+..+..+..-++++++..++ ++.|..+| ++.+..+.+.+.....|.+.+..| -..++.+.++..++..+..+
T Consensus 389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~ 468 (477)
T TIGR01301 389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL 468 (477)
T ss_pred HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999995 45699999 889999998888877777555444 45677888888888888888
Q ss_pred hhhcCCC
Q psy3615 179 IVVYDTP 185 (211)
Q Consensus 179 ~~~~~~~ 185 (211)
+.+|+.+
T Consensus 469 ~~~~~~~ 475 (477)
T TIGR01301 469 ILLPRPR 475 (477)
T ss_pred HhCCCCC
Confidence 8787654
No 232
>KOG3626|consensus
Probab=98.42 E-value=2.1e-07 Score=79.53 Aligned_cols=163 Identities=13% Similarity=0.094 Sum_probs=133.4
Q ss_pred cccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc-----------
Q psy3615 24 LFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY----------- 92 (211)
Q Consensus 24 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~----------- 92 (211)
+......+.+.++++..+.|++.+.+-++..+...+..+...|.-|-+.+-+|.++++++.+++++.+.
T Consensus 116 ~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~ 195 (735)
T KOG3626|consen 116 FNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEV 195 (735)
T ss_pred hhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhh
Confidence 334556678999999999999999999999999999999999999999999999999999998876310
Q ss_pred -------c-----------------------------c--HH-HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHh
Q psy3615 93 -------W-----------------------------D--YK-AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFI 133 (211)
Q Consensus 93 -------~-----------------------------~--~~-~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~ 133 (211)
+ + ++ .+.++.++.|+|....++...+++-|...+++-...+
T Consensus 196 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYl 275 (735)
T KOG3626|consen 196 IKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYL 275 (735)
T ss_pred hhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHH
Confidence 0 0 23 5677899999999999999999999999999999999
Q ss_pred h-hhhcchhhhhhhhhhhhhhhcc------------------cC-chHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy3615 134 T-SYLGSSFGVALSYPLCGVVIDT------------------LG-WEAAFYVTGALGVVWWVVWMIVVYDTPD 186 (211)
Q Consensus 134 ~-~~~~~~~g~~~~~~~~~~l~~~------------------~g-w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (211)
| .+....+|.++|..+++++.+. .| |+.-|++.+.+.++..+..+++-++.|+
T Consensus 276 gi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 276 GILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 9 8899999999999998887542 12 6677788888887777766654444443
No 233
>KOG0255|consensus
Probab=98.34 E-value=1.7e-05 Score=66.85 Aligned_cols=141 Identities=11% Similarity=-0.008 Sum_probs=99.9
Q ss_pred HHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccH-HHHHHHHHHHHhhhhcchHHHHHHhhhccCC
Q psy3615 48 SFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDY-KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPP 126 (211)
Q Consensus 48 ~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~ 126 (211)
.............+...|++|||.....+..+..++.++..+...... +...+...+...+.+..+.....+.+|.+|.
T Consensus 358 ~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt 437 (521)
T KOG0255|consen 358 LSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPT 437 (521)
T ss_pred HHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 333344555556678999999999999999999999998887743333 2345555555566666667779999999999
Q ss_pred CchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q psy3615 127 TERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHP 189 (211)
Q Consensus 127 ~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (211)
..|..+.+ ......+|..++|.+...... ......+...+....+..++..+++||+.....
T Consensus 438 ~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l 500 (521)
T KOG0255|consen 438 VVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPL 500 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCC
Confidence 99999999 889999999999988755544 222222223455666666666567888755443
No 234
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.32 E-value=1.5e-05 Score=64.44 Aligned_cols=156 Identities=10% Similarity=0.016 Sum_probs=113.8
Q ss_pred cccCCCccc-ccCCchhhH-HHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q psy3615 26 QQDGDSGSL-FHWDSNVQN-LVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRI 103 (211)
Q Consensus 26 ~~~~~i~~~-~~~s~~~~~-~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 103 (211)
++.|++.+. .|++.+|+. -+.-...=.+....++...+.|..+.|++++++.+...+...+..+. ++...+-+..+
T Consensus 25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~--~sv~~mq~~q~ 102 (412)
T PF01770_consen 25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG--TSVLAMQLMQF 102 (412)
T ss_pred cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--CcHHHHHHHHH
Confidence 334455554 788888764 44445555667778888999999999999999999988888887777 88999999999
Q ss_pred HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc--cCchHHHHHHHHHHHHHHHHHHhh
Q psy3615 104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT--LGWEAAFYVTGALGVVWWVVWMIV 180 (211)
Q Consensus 104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~--~gw~~~~~~~~~~~~~~~~~~~~~ 180 (211)
..|++.+. ..+..+++-...|+++--++.+ .-....+|..++..++..+... .++....++......+..++. ++
T Consensus 103 ~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~-~f 180 (412)
T PF01770_consen 103 FYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIA-LF 180 (412)
T ss_pred HHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HH
Confidence 99998775 5677788888888887777777 5577778888888888777653 345556555554444444444 34
Q ss_pred hcCCC
Q psy3615 181 VYDTP 185 (211)
Q Consensus 181 ~~~~~ 185 (211)
+|..+
T Consensus 181 LP~~~ 185 (412)
T PF01770_consen 181 LPMPK 185 (412)
T ss_pred cCCCC
Confidence 55543
No 235
>KOG0252|consensus
Probab=98.30 E-value=1.2e-07 Score=76.49 Aligned_cols=130 Identities=11% Similarity=0.020 Sum_probs=96.9
Q ss_pred HHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc--cHHHHH----HHHHHHHhhhhcchHHHHHHhhhccCC
Q psy3615 53 HWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW--DYKAMA----GLRIVQGVIGGLAWPSMHHLVAHWIPP 126 (211)
Q Consensus 53 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~----~~~~l~G~~~g~~~~~~~~~~~~~~~~ 126 (211)
+..+-++...+.|++|||+..+.+.+++++..+..+...++ +-..+. +..++.-+|-. .....+.+|.+|.
T Consensus 361 ~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FPa 437 (538)
T KOG0252|consen 361 TVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPA 437 (538)
T ss_pred cCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchH
Confidence 34466778889999999999999999999988887766321 112222 22333333332 3345567899999
Q ss_pred CchhhHhh-hhhcchhhhhhhhhhhhhhhc-----ccCchHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy3615 127 TERSQFIT-SYLGSSFGVALSYPLCGVVID-----TLGWEAAFYVTGALGVVWWVVWMIVVYDTPD 186 (211)
Q Consensus 127 ~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-----~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (211)
+.|++..| .....-.|++++.....++.+ ..+.+..+++.+.+++...++.++ +||+..
T Consensus 438 rvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l-~pEtk~ 502 (538)
T KOG0252|consen 438 RVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL-IPETKG 502 (538)
T ss_pred HHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE-eecccc
Confidence 99999999 668889999999999999988 678899999998888887777655 666543
No 236
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=98.24 E-value=7.4e-06 Score=66.12 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=86.8
Q ss_pred chhHHHHHHHHHHHHHhhhhhcc-------cHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCC---chhhHhh-hhhcc
Q psy3615 71 VVFGVSNLAMFLISFALPAAAYW-------DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPT---ERSQFIT-SYLGS 139 (211)
Q Consensus 71 ~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~---~r~~~~~-~~~~~ 139 (211)
|+++++.++..++.++..++..+ +.+.++++..+.++|.|..-|...++..|-++++ +|.+... +|.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788888888888875544222 2357888889999999999999999999999876 4566777 78999
Q ss_pred hhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615 140 SFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 140 ~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
++|..+++.+.+++.++.||.+.|.+.++..++..+..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988887776665543
No 237
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.17 E-value=2.6e-06 Score=52.54 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=47.6
Q ss_pred cccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHH
Q psy3615 24 LFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAM 80 (211)
Q Consensus 24 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~ 80 (211)
+.|..+...++.|+|+.++|.+.++..+...++.+++|.++||+++++.++....++
T Consensus 19 ~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 19 LYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 334444445679999999999999999999999999999999999999887765543
No 238
>KOG2533|consensus
Probab=98.15 E-value=2.7e-06 Score=70.79 Aligned_cols=140 Identities=14% Similarity=0.002 Sum_probs=88.4
Q ss_pred cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH----hCCcchhHHHHHHHHHHH-HHhhhhhcccHHHHHHHH
Q psy3615 28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS----LGTKVVFGVSNLAMFLIS-FALPAAAYWDYKAMAGLR 102 (211)
Q Consensus 28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~G~r~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~ 102 (211)
+-.+.+..|.|..+.+.+.+.+.++.+++.+..|+++|| +.+|........+..+.. ...... .+........
T Consensus 297 pl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~--~~~~~~~~~~ 374 (495)
T KOG2533|consen 297 PLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA--AVLPGAYGAF 374 (495)
T ss_pred HHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh--ccchHHhHHH
Confidence 333444567899999999999999999999999999999 667776666666655544 333222 2233333333
Q ss_pred HHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hh-hcchhhh-hhhhhhhhhhhcccCchHHHHHHHHH
Q psy3615 103 IVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGV-ALSYPLCGVVIDTLGWEAAFYVTGAL 169 (211)
Q Consensus 103 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~-~~~~~~~~~l~~~~gw~~~~~~~~~~ 169 (211)
+....+.....+......++...++.|..... .+ .+.+.+. ..++...+...++++|...|......
T Consensus 375 ~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~~ 444 (495)
T KOG2533|consen 375 LIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVAA 444 (495)
T ss_pred HhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHHH
Confidence 34444555566777788888877665554444 33 4444444 44444445555657888888444333
No 239
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.10 E-value=0.00015 Score=58.50 Aligned_cols=147 Identities=9% Similarity=-0.085 Sum_probs=103.5
Q ss_pred hhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHH-HHHHhhhhhc-ccHHHHHHHHHHHHhhhhcchHHHH
Q psy3615 40 NVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFL-ISFALPAAAY-WDYKAMAGLRIVQGVIGGLAWPSMH 117 (211)
Q Consensus 40 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i-~~~~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~ 117 (211)
+..+...++..+..++.++..|.++|+.|+||...-.....++ ..+...+... +.++..++...+..++.........
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 3467778888999999999999999999987776655555444 4455555532 2344555667777888888888899
Q ss_pred HHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhh--h-hh---------------cccCchHHHHHHHHHHHHHHHHHH
Q psy3615 118 HLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCG--V-VI---------------DTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 118 ~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~--~-l~---------------~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
+++.+..++++-++..+ -+....+|..+.-.+.- . .. +...-|.++.+.++..++..+-.+
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 99999999988888877 66666676655433321 1 11 223467788888888888777776
Q ss_pred hhhcCCCC
Q psy3615 179 IVVYDTPD 186 (211)
Q Consensus 179 ~~~~~~~~ 186 (211)
+..++.++
T Consensus 218 ~~v~~~~~ 225 (438)
T COG2270 218 LNVHDAEK 225 (438)
T ss_pred hccccccc
Confidence 66666554
No 240
>KOG2816|consensus
Probab=97.95 E-value=0.00015 Score=60.12 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=106.2
Q ss_pred CCcccccCCchhhHHHHHHHHHHHHHhhchhh-HHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhh
Q psy3615 30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGG-VLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVI 108 (211)
Q Consensus 30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g-~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~ 108 (211)
+++..+++++.+.+...+.......+++.+.. .+...+|-|+++..|++...+..++.+++ ++.|+++....+.++.
T Consensus 267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~--~~~w~~~~~~v~~~~~ 344 (463)
T KOG2816|consen 267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA--TETWMMFAAGVVVALA 344 (463)
T ss_pred EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--ccchhhhHHHHHHHhh
Confidence 45667899999999998888888888888776 77888999999999999999999999888 8888888888777765
Q ss_pred hhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc
Q psy3615 109 GGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID 155 (211)
Q Consensus 109 ~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~ 155 (211)
+...+...+.++.+.+++++|++.+ +.....+...++|.+-+.+..
T Consensus 345 -~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 345 -GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred -cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 5578999999999999999999999 889899999999888776643
No 241
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.92 E-value=0.00015 Score=61.68 Aligned_cols=111 Identities=12% Similarity=0.030 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHHHhhchhhHHHHHhCC-cchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHH
Q psy3615 41 VQNLVLGSFFWLHWSTQIPGGVLARSLGT-KVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHL 119 (211)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~g~l~dr~G~-r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~ 119 (211)
+.++....+.++..++..+.|.+..++++ |+.++++.++..++.-+++....+|....+..-++.|++.|.........
T Consensus 350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~ 429 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI 429 (599)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence 56788888899999999999999998876 55556777676665444433333455566777889999999888777777
Q ss_pred hhhccCCCchhhHhh-hhhcchhhhhhhhhhhh
Q psy3615 120 VAHWIPPTERSQFIT-SYLGSSFGVALSYPLCG 151 (211)
Q Consensus 120 ~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~ 151 (211)
..-..|.++-+.+.+ ......+|+.+|..+..
T Consensus 430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~ 462 (599)
T PF06609_consen 430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN 462 (599)
T ss_pred eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777788888899888 66777777777766643
No 242
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.86 E-value=0.00022 Score=59.57 Aligned_cols=138 Identities=12% Similarity=-0.041 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHHHhCC--cch-----hHHHHHHHHHHHHHhhhhh-------cccHHHHHHHHHHHHh
Q psy3615 42 QNLVLGSFFWLHWSTQIPGGVLARSLGT--KVV-----FGVSNLAMFLISFALPAAA-------YWDYKAMAGLRIVQGV 107 (211)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~--r~~-----~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~l~G~ 107 (211)
.+|..++..+...+..++.+++-.|..+ |.. +.+|+++.+++.+.+.+.. ..+.+++++..++.++
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~ 389 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF 389 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 5677888888888888888888777633 211 5677777787766554321 1256778889999999
Q ss_pred hhhcchHHHHHHhhhccCCCchhhHhh-hhh-cchhhhhhhhhhhhhhhcc------------cCchHHHHHHHHHHHHH
Q psy3615 108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYL-GSSFGVALSYPLCGVVIDT------------LGWEAAFYVTGALGVVW 173 (211)
Q Consensus 108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~-~~~~g~~~~~~~~~~l~~~------------~gw~~~~~~~~~~~~~~ 173 (211)
|+-...|...+.+++..|++.||+.+| ++. ...+|..++..+.+..... ..+...|...+...++.
T Consensus 390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 654 3467777666666554311 12455677777666655
Q ss_pred -HHHHHh
Q psy3615 174 -WVVWMI 179 (211)
Q Consensus 174 -~~~~~~ 179 (211)
.++.+.
T Consensus 470 ~~~~~~~ 476 (493)
T PRK15462 470 VGVVLMI 476 (493)
T ss_pred HHHHHHH
Confidence 444333
No 243
>KOG2615|consensus
Probab=97.81 E-value=7.3e-05 Score=59.50 Aligned_cols=123 Identities=16% Similarity=0.060 Sum_probs=104.1
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhC--CcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhh
Q psy3615 32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLG--TKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIG 109 (211)
Q Consensus 32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G--~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~ 109 (211)
.+.+|.++.+.|-+.+...+.+.+.+....+..||.. -+-.+..+..+..-..++.... +....+...-.+-.+..
T Consensus 289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~--~~~~~l~~~s~l~sf~~ 366 (451)
T KOG2615|consen 289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA--RTPVVLYLGSTLKSFST 366 (451)
T ss_pred cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc--ccchhhhHHHHHHHHHH
Confidence 3678999999999999999999999999889999877 5666666666666666666666 66778888888888888
Q ss_pred hcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc
Q psy3615 110 GLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT 156 (211)
Q Consensus 110 g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~ 156 (211)
+...+....++....|.++||..+| ......++-++||.++|.+..+
T Consensus 367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 367 ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 8888999999999999999999999 7799999999999999877653
No 244
>PTZ00207 hypothetical protein; Provisional
Probab=97.70 E-value=0.00023 Score=60.65 Aligned_cols=132 Identities=7% Similarity=-0.057 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhCC--------cchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHH
Q psy3615 45 VLGSFFWLHWSTQIPGGVLARSLGT--------KVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSM 116 (211)
Q Consensus 45 ~~~~~~~~~~i~~~~~g~l~dr~G~--------r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~ 116 (211)
..++..++.+++.+..|.+....-+ |+..+....++.++.+++.+. -....+++..++.|++.|..++..
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~--~p~~~L~~~~~lvg~~~G~~~~~~ 473 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLT--LPKAALPLPYFIAAFANGFMAATI 473 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH--CCccHhHHHHHHHHHHhhHhHHHH
Confidence 6788889999999999988722211 222222222245555555444 112578999999999999999999
Q ss_pred HHHhhhccCCCchhhHhh-hhhcchhhhhhh-hhhhhhhhccc----------C---chHHHHHHHHHHHHHHHHHHh
Q psy3615 117 HHLVAHWIPPTERSQFIT-SYLGSSFGVALS-YPLCGVVIDTL----------G---WEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 117 ~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~-~~~~~~l~~~~----------g---w~~~~~~~~~~~~~~~~~~~~ 179 (211)
...++|+|. ++-|+-.. .+...-+|..+- ..+.|.+.|+. | ++.+|++++.++....+....
T Consensus 474 ~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~ 550 (591)
T PTZ00207 474 ALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY 550 (591)
T ss_pred HHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence 999999999 88888888 667777776543 55666666431 2 678899998888887776544
No 245
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.66 E-value=0.0014 Score=54.44 Aligned_cols=126 Identities=10% Similarity=0.003 Sum_probs=87.5
Q ss_pred CCcccccC-----CchhhHHHHHHHHHHHHHh-hchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhccc---------
Q psy3615 30 DSGSLFHW-----DSNVQNLVLGSFFWLHWST-QIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD--------- 94 (211)
Q Consensus 30 ~i~~~~~~-----s~~~~~~~~~~~~~~~~i~-~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~--------- 94 (211)
++++.+.+ +.+.+.++-+...+.+.+. .++.+++++|++|++++-+....+.....++.+...++
T Consensus 28 ~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~ 107 (472)
T TIGR00769 28 DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTAL 107 (472)
T ss_pred hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHH
Confidence 34566555 3357788888776666655 88999999999999998877777666655554431111
Q ss_pred --------------------HHHHHHHHHHHHhhhhcchH-HHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhh
Q psy3615 95 --------------------YKAMAGLRIVQGVIGGLAWP-SMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGV 152 (211)
Q Consensus 95 --------------------~~~~~~~~~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~ 152 (211)
.|...+..+..-+-.....+ .-..+++|.+..+|-.|..+ +..+.++|..+++.+..+
T Consensus 108 ~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~ 187 (472)
T TIGR00769 108 ADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKY 187 (472)
T ss_pred HHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222333333333444 66789999999999999999 889999999999999888
Q ss_pred hhc
Q psy3615 153 VID 155 (211)
Q Consensus 153 l~~ 155 (211)
+.+
T Consensus 188 ~~~ 190 (472)
T TIGR00769 188 FSK 190 (472)
T ss_pred HHH
Confidence 763
No 246
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.60 E-value=0.0016 Score=52.86 Aligned_cols=134 Identities=7% Similarity=-0.037 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhh
Q psy3615 42 QNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVA 121 (211)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~ 121 (211)
.+.+.-...+-..+..+.+.+..+|+..+.=+....++..++.++.+++ ++.+.-+++-.+.+++.|........+.+
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~--~~v~~~l~Gv~las~ssg~GE~tfL~lt~ 138 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS--PSVWVRLLGVVLASLSSGLGEVTFLSLTH 138 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec--cchhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 3445555556666777778888998876555666777788888888777 88888888889999998887777777644
Q ss_pred hccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCc--hHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615 122 HWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGW--EAAFYVTGALGVVWWVVWMIVVYD 183 (211)
Q Consensus 122 ~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw--~~~~~~~~~~~~~~~~~~~~~~~~ 183 (211)
.+++ ...+ +..+.+.++.+|...--.+.+ .++ |..+.+...+.++..+..++.+|+
T Consensus 139 -~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 139 -FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred -hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5543 2355 667777777777666545544 454 667777777766655555555553
No 247
>KOG4332|consensus
Probab=97.52 E-value=0.00025 Score=54.22 Aligned_cols=145 Identities=15% Similarity=0.107 Sum_probs=94.9
Q ss_pred CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhh
Q psy3615 30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIG 109 (211)
Q Consensus 30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~ 109 (211)
++-+.++..+.+++.+.....-..++...+.|-++|+-|||+..+.-++.+.++++-- .++++-.++++|.+-|++.
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTK---hSpqYkVLmVGR~LGGiaT 138 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITK---HSPQYKVLMVGRVLGGIAT 138 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhh---cCCceEEEeehhhhhhHHH
Confidence 4456788888999988877777778888889999999999997666555555544321 2367889999999999999
Q ss_pred hcchHHHHH-HhhhccCCCch-----hhHhh--hhhcchhhhhhhhhhhhhhhcccC--chHHHHHHHHHHHHHHHHH
Q psy3615 110 GLAWPSMHH-LVAHWIPPTER-----SQFIT--SYLGSSFGVALSYPLCGVVIDTLG--WEAAFYVTGALGVVWWVVW 177 (211)
Q Consensus 110 g~~~~~~~~-~~~~~~~~~~r-----~~~~~--~~~~~~~g~~~~~~~~~~l~~~~g--w~~~~~~~~~~~~~~~~~~ 177 (211)
+..+.+.-+ ++.|..+++.- ..-.+ ...+..+-.+++.+.+..+.+.++ --.+|-..+.+..+...+.
T Consensus 139 sLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvi 216 (454)
T KOG4332|consen 139 SLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVI 216 (454)
T ss_pred HHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 887777654 56666543321 11112 224445555666666667766543 3445554444444433333
No 248
>KOG3098|consensus
Probab=97.39 E-value=0.0016 Score=53.77 Aligned_cols=102 Identities=7% Similarity=-0.017 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccC
Q psy3615 46 LGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIP 125 (211)
Q Consensus 46 ~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~ 125 (211)
.++......++.++.+.+.|+.|+|+.+.++...+......... .|-+.+++...+.|+|.+..+...-.++++...
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~---~N~y~~yfssallG~Gaallw~GqG~ylt~~st 132 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF---PNSYYLYFSSALLGFGAALLWTGQGGYLTSNST 132 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh---cchHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence 67778888899999999999999999999999999988777655 467888999999999999999999999999999
Q ss_pred CCchhhHhh-hhhcchhhhhhhhhhh
Q psy3615 126 PTERSQFIT-SYLGSSFGVALSYPLC 150 (211)
Q Consensus 126 ~~~r~~~~~-~~~~~~~g~~~~~~~~ 150 (211)
++.+.+..+ .......+..+|..+.
T Consensus 133 ~~tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 133 RETIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence 999998888 5566666666664443
No 249
>PRK03612 spermidine synthase; Provisional
Probab=97.35 E-value=0.0053 Score=51.89 Aligned_cols=140 Identities=15% Similarity=0.112 Sum_probs=81.9
Q ss_pred cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHH--HH-HHHHHhhhhhc--cc-HHHHHHHHHHHHh
Q psy3615 34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLA--MF-LISFALPAAAY--WD-YKAMAGLRIVQGV 107 (211)
Q Consensus 34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~--~~-i~~~~~~~~~~--~~-~~~~~~~~~l~G~ 107 (211)
.+|-+....+.+.+.+..+..+++.+++++.++.-++ ...+-..+ .+ ++..+...... .. ...+....++.++
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~-~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 122 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG-FVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL 122 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888999999999999999888876432222 22211111 11 11111111100 01 1122334456677
Q ss_pred hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh-cccCchHHHHHHHHHHHHHHH
Q psy3615 108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI-DTLGWEAAFYVTGALGVVWWV 175 (211)
Q Consensus 108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~-~~~gw~~~~~~~~~~~~~~~~ 175 (211)
..|...|....+..+... ++-++..| +|....+|..+|.++.+++. +..|-....++.+.+.++..+
T Consensus 123 l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 123 LIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred HHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 777777776666654332 23567778 99999999999999987654 467765555555555544443
No 250
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.31 E-value=0.00055 Score=56.52 Aligned_cols=123 Identities=17% Similarity=0.078 Sum_probs=92.3
Q ss_pred cCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh-c-------ccHHHHHHHHHHHHh
Q psy3615 36 HWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA-Y-------WDYKAMAGLRIVQGV 107 (211)
Q Consensus 36 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~-~-------~~~~~~~~~~~l~G~ 107 (211)
|.|+...+.+..+..++..++..+......+..-|+++.+..++.++..+.-.... . ++.+..+.--++..+
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~ 330 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV 330 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence 48888888888888888888888888877777888888888777766555322110 0 122333344566666
Q ss_pred hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC
Q psy3615 108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG 158 (211)
Q Consensus 108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g 158 (211)
..+..+.....+++|..|++.-|+..+ .....++|..++..++..+.+..+
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 667777788899999999999999999 889999999999999988876654
No 251
>KOG1237|consensus
Probab=97.26 E-value=0.00075 Score=57.43 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=114.2
Q ss_pred cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH-hCCcchhHHHHHHHHHHHHHhhhhhc-c----------
Q psy3615 26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS-LGTKVVFGVSNLAMFLISFALPAAAY-W---------- 93 (211)
Q Consensus 26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~i~~~~~~~~~~-~---------- 93 (211)
.+..++.+++|.+.....-....+.-......+.+++++|- +||-+++.++.++..++..+..+... +
T Consensus 59 nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~ 138 (571)
T KOG1237|consen 59 NLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFK 138 (571)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Confidence 34455677888888777777888888888888999999995 58999999998888887655543210 0
Q ss_pred ---------c---HHHHHHHHHHHHhhhhcchHHHHHHhhhccC---CC-c--hhhHhh-hhhcchhhhhhhhhhhhhhh
Q psy3615 94 ---------D---YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIP---PT-E--RSQFIT-SYLGSSFGVALSYPLCGVVI 154 (211)
Q Consensus 94 ---------~---~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~---~~-~--r~~~~~-~~~~~~~g~~~~~~~~~~l~ 154 (211)
+ ...+....-+..+|.|+.-+...++-+|-++ ++ . +...+. .+...+.|..++..+.-+.-
T Consensus 139 ~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq 218 (571)
T KOG1237|consen 139 PGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ 218 (571)
T ss_pred CCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh
Confidence 1 2345566666777889999999999999998 22 2 235566 66888889888888888887
Q ss_pred cccCchHHHHHHHHHHHHHHHHHH
Q psy3615 155 DTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 155 ~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
++.+|...|.+......+..++.+
T Consensus 219 ~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 219 DNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred hcccceeeccHHHHHHHHHHHHHH
Confidence 889999999988877766655544
No 252
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.14 E-value=0.0067 Score=50.18 Aligned_cols=141 Identities=14% Similarity=0.057 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHHHHhhchhhHHHHHhCCc--c-----hhHHHHHHHHHHHHHhhhh---h-----cccHHHHHHHHHHH
Q psy3615 41 VQNLVLGSFFWLHWSTQIPGGVLARSLGTK--V-----VFGVSNLAMFLISFALPAA---A-----YWDYKAMAGLRIVQ 105 (211)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r--~-----~~~~~~~~~~i~~~~~~~~---~-----~~~~~~~~~~~~l~ 105 (211)
...+..+...+...+.+++..++..+.+++ . -+-++..+++.+.+++... . ..+.++++...+++
T Consensus 325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~ 404 (498)
T COG3104 325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ 404 (498)
T ss_pred CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence 456778888888889998888888885544 1 1345666666655554433 1 13578889999999
Q ss_pred HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhh------hhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGV------VIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~------l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
++|+=+..|...+++.+..|++-.+..++ +......|..++..+++. ..+.......|+..+...++..+...
T Consensus 405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~ 484 (498)
T COG3104 405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL 484 (498)
T ss_pred HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 778888888877777663 22334456677777777776666554
Q ss_pred hhh
Q psy3615 179 IVV 181 (211)
Q Consensus 179 ~~~ 181 (211)
...
T Consensus 485 ~~~ 487 (498)
T COG3104 485 LLS 487 (498)
T ss_pred Hhh
Confidence 433
No 253
>KOG0637|consensus
Probab=97.04 E-value=0.00065 Score=55.41 Aligned_cols=123 Identities=12% Similarity=-0.049 Sum_probs=88.5
Q ss_pred CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH----hCCcchhHH-HHHHHHHHHHHhhhhhc------c------
Q psy3615 31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS----LGTKVVFGV-SNLAMFLISFALPAAAY------W------ 93 (211)
Q Consensus 31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~G~r~~~~~-~~~~~~i~~~~~~~~~~------~------ 93 (211)
+..++|++....+.+-.+..+...+.+++.|..+|| |||||..+. +.....++.++..++.+ +
T Consensus 58 yl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~ 137 (498)
T KOG0637|consen 58 YLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPV 137 (498)
T ss_pred HHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCccccc
Confidence 456788888888888888888889999999999994 788777664 44445556666665521 0
Q ss_pred ---cHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhh-Hhh-hhhcchhhhhhhhhhhhhh
Q psy3615 94 ---DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQ-FIT-SYLGSSFGVALSYPLCGVV 153 (211)
Q Consensus 94 ---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~-~~~-~~~~~~~g~~~~~~~~~~l 153 (211)
....+++...+.=++.-......-+++.|....+++-+ +++ +..+..+|..+|..++++.
T Consensus 138 ~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 138 KPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred chHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 12334444445555666677788999999988777766 888 6688899999988887643
No 254
>KOG3762|consensus
Probab=96.92 E-value=0.00098 Score=55.51 Aligned_cols=80 Identities=14% Similarity=0.026 Sum_probs=62.2
Q ss_pred CCCCccccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHH-HHHHHhhh
Q psy3615 11 PSQSPISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMF-LISFALPA 89 (211)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~-i~~~~~~~ 89 (211)
..+..+-+...+.+.++.+.+-+++|+++.+.|.+++.--+..+++.+++|.++||+-+||.++++..+.. ...++..+
T Consensus 17 k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f 96 (618)
T KOG3762|consen 17 KLFYLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF 96 (618)
T ss_pred eeeeeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence 34445555666777788888889999999999999999999999999999999999987776666555544 44555444
Q ss_pred h
Q psy3615 90 A 90 (211)
Q Consensus 90 ~ 90 (211)
.
T Consensus 97 v 97 (618)
T KOG3762|consen 97 V 97 (618)
T ss_pred c
Confidence 3
No 255
>KOG2563|consensus
Probab=96.80 E-value=0.0015 Score=53.23 Aligned_cols=150 Identities=12% Similarity=0.030 Sum_probs=91.1
Q ss_pred cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCC-cchhHHHHHHHHHHH-HHhhhhhcc-cHHHHHHHHHHHHhhhh
Q psy3615 34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGT-KVVFGVSNLAMFLIS-FALPAAAYW-DYKAMAGLRIVQGVIGG 110 (211)
Q Consensus 34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~-r~~~~~~~~~~~i~~-~~~~~~~~~-~~~~~~~~~~l~G~~~g 110 (211)
.-|.+....|++.....++.++++...|.+.||... |.++++......++. .+....... ..+.+.....+.|.+..
T Consensus 295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~ 374 (480)
T KOG2563|consen 295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGT 374 (480)
T ss_pred cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhc
Confidence 345555678999999999999999999999999865 555555555544442 222222111 23455667778888888
Q ss_pred cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC---chH-HHHHHHHHHHHHHHHHHhhhcC
Q psy3615 111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG---WEA-AFYVTGALGVVWWVVWMIVVYD 183 (211)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g---w~~-~~~~~~~~~~~~~~~~~~~~~~ 183 (211)
..+|....+-.|..-|..-+...| .....++-..+-..+-+...+..+ |.. .-+.......+..++..++.|+
T Consensus 375 ~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 375 GYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred CCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence 888988888888865555555566 554433333444455555555544 333 3333334444444455554443
No 256
>KOG1330|consensus
Probab=96.43 E-value=0.0093 Score=48.98 Aligned_cols=123 Identities=19% Similarity=0.204 Sum_probs=74.0
Q ss_pred CchhhHHHHHHHHHHHHHhhchhhHHHHHh----CCcchhHHHHHHHHHHH------HHhhhhhcccHHHHHHHHHHHHh
Q psy3615 38 DSNVQNLVLGSFFWLHWSTQIPGGVLARSL----GTKVVFGVSNLAMFLIS------FALPAAAYWDYKAMAGLRIVQGV 107 (211)
Q Consensus 38 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~----G~r~~~~~~~~~~~i~~------~~~~~~~~~~~~~~~~~~~l~G~ 107 (211)
+..+..+...+...+..++.+++|.++||+ .+-.......+..+.+. +.+......+...+....++.|.
T Consensus 281 ~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~ 360 (493)
T KOG1330|consen 281 DHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGE 360 (493)
T ss_pred ccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 444555666778888899999999999994 22122222222222211 11111111122233344455555
Q ss_pred hhhc-chHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcc-cCch
Q psy3615 108 IGGL-AWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDT-LGWE 160 (211)
Q Consensus 108 ~~g~-~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~-~gw~ 160 (211)
.... .+....-+..+..|+++|..+.+ .. ....+|-.-+|.+.|.+.++ .||+
T Consensus 361 ~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 361 TISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred HHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 4433 45566678889999999999999 55 66667777777788888876 3555
No 257
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.35 E-value=0.028 Score=45.77 Aligned_cols=112 Identities=12% Similarity=0.099 Sum_probs=78.6
Q ss_pred CchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHH--HHHHHHhhh-hhcccHHHHHHHHHHHHhhhhcchH
Q psy3615 38 DSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAM--FLISFALPA-AAYWDYKAMAGLRIVQGVIGGLAWP 114 (211)
Q Consensus 38 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~--~i~~~~~~~-~~~~~~~~~~~~~~l~G~~~g~~~~ 114 (211)
..++..+....|.+|-++++--...+ |+ |++.+...+-. .+..++.++ -..++.|...+..+..|+..|..+.
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 45677888888999888876543332 33 44433332222 222121111 1126788888899999999999999
Q ss_pred HHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhh
Q psy3615 115 SMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV 153 (211)
Q Consensus 115 ~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l 153 (211)
.....+.+-.++++|..+++ ....-++|..++..++-.+
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999 8888888888887776544
No 258
>KOG3098|consensus
Probab=95.95 E-value=0.16 Score=42.24 Aligned_cols=102 Identities=10% Similarity=-0.001 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhhchhhHHHH---HhCCcchhHHHHHHHHHHHHHhhhhhc----------------ccHHHHHHHHHH
Q psy3615 44 LVLGSFFWLHWSTQIPGGVLAR---SLGTKVVFGVSNLAMFLISFALPAAAY----------------WDYKAMAGLRIV 104 (211)
Q Consensus 44 ~~~~~~~~~~~i~~~~~g~l~d---r~G~r~~~~~~~~~~~i~~~~~~~~~~----------------~~~~~~~~~~~l 104 (211)
.......++..++....+.+.+ ++|+++.+.++..+..+..++.-+... +++....+..++
T Consensus 283 i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l 362 (461)
T KOG3098|consen 283 IYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFL 362 (461)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHH
Confidence 3334445555566666666654 679999999998888877776554321 135566778899
Q ss_pred HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhh
Q psy3615 105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALS 146 (211)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~ 146 (211)
.|++-.......+.++....| ++|..+.+ .-.-..++..++
T Consensus 363 ~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~ 404 (461)
T KOG3098|consen 363 LGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVA 404 (461)
T ss_pred HhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999994 66777777 445555555543
No 259
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=95.63 E-value=0.21 Score=41.32 Aligned_cols=118 Identities=12% Similarity=-0.119 Sum_probs=82.9
Q ss_pred cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh---hhc-c----cHHHHHHHHHHH
Q psy3615 34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA---AAY-W----DYKAMAGLRIVQ 105 (211)
Q Consensus 34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~---~~~-~----~~~~~~~~~~l~ 105 (211)
.-|+++..+|..-+...+....+.+...++.+|+|..+.-.++...-..+..++.. ... + +...++.+-.+.
T Consensus 287 ~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~S 366 (432)
T PF06963_consen 287 SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALS 366 (432)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHH
Confidence 34899999999999999999999999999999999999888887755443333221 111 1 222333333333
Q ss_pred HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhh
Q psy3615 106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCG 151 (211)
Q Consensus 106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~ 151 (211)
-+|.=.+--+..-++.|..|+++||...+ -....++...+...++-
T Consensus 367 R~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 367 RIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred HHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444456677888999999999999999 55777776666555543
No 260
>KOG3574|consensus
Probab=95.41 E-value=0.15 Score=41.31 Aligned_cols=120 Identities=10% Similarity=0.018 Sum_probs=70.2
Q ss_pred CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHH-----HhCCcchhHH-HHHHHHHHHHHhhhhh---------cc
Q psy3615 29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLAR-----SLGTKVVFGV-SNLAMFLISFALPAAA---------YW 93 (211)
Q Consensus 29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-----r~G~r~~~~~-~~~~~~i~~~~~~~~~---------~~ 93 (211)
|.+-+.-|.|..+.+.....+. -...-+++.++.| |+||||.-++ ...+.+..+.+.+.-. .+
T Consensus 54 P~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p 131 (510)
T KOG3574|consen 54 PLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLP 131 (510)
T ss_pred HHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCc
Confidence 3334445556555543222111 1234467888999 9999987542 2222333333332211 12
Q ss_pred cHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhh
Q psy3615 94 DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLC 150 (211)
Q Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~ 150 (211)
+........++.-+..+..-.++-.+.-....+++-|.+.. -..+...|.+++..+.
T Consensus 132 ~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 132 NVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 33344445567777777777888888888888898888887 5577777776665554
No 261
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=94.73 E-value=0.0084 Score=50.93 Aligned_cols=138 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred ccccccccccCCCcccccCCchhhHHHHHHHHH-HHHHhhchhhHHHHHhC--CcchhHHHHHHHHHHHHH---hhhhh-
Q psy3615 19 SSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFW-LHWSTQIPGGVLARSLG--TKVVFGVSNLAMFLISFA---LPAAA- 91 (211)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G--~r~~~~~~~~~~~i~~~~---~~~~~- 91 (211)
.-.+...+.+.+++.+|++++++.+.+.....+ +.+++.+++|++..|+. .|+.+.+..+...+..+. ..+..
T Consensus 320 ~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C 399 (539)
T PF03137_consen 320 IVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGC 399 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecC
Confidence 344556678899999999999999988876665 66789999999999875 455555444444443332 11100
Q ss_pred -----------c-------------------------------------ccHHHHHHHHHHHHhhhhcchHHHHHHhhhc
Q psy3615 92 -----------Y-------------------------------------WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHW 123 (211)
Q Consensus 92 -----------~-------------------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~ 123 (211)
. +++..+++..++.-+..+.........+-+.
T Consensus 400 ~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~ 479 (539)
T PF03137_consen 400 PNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRC 479 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeecc
Confidence 0 0122233444444444444555566667788
Q ss_pred cCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcc
Q psy3615 124 IPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDT 156 (211)
Q Consensus 124 ~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~ 156 (211)
.++++|..++| -. ....+|.+-+|++.|.++|.
T Consensus 480 V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 480 VPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -----------------------------------
T ss_pred CChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 89999999999 44 67778889999999999885
No 262
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=94.22 E-value=0.36 Score=39.94 Aligned_cols=134 Identities=12% Similarity=-0.074 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHH----HHHHhh--hhhcc----cHHHHHH---HHHHHHhhhhc
Q psy3615 45 VLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFL----ISFALP--AAAYW----DYKAMAG---LRIVQGVIGGL 111 (211)
Q Consensus 45 ~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i----~~~~~~--~~~~~----~~~~~~~---~~~l~G~~~g~ 111 (211)
..-.-.+..++..+..|...||..|.+++..+.+.--+ ++.+.. +...+ +.+.... .-.+.|...-.
T Consensus 43 ygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~L 122 (432)
T PF06963_consen 43 YGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERL 122 (432)
T ss_pred HHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 33444566778888999999999999987766544322 222211 11111 1122222 12222211111
Q ss_pred -chHHHHHHhhhcc------CCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 112 -AWPSMHHLVAHWI------PPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 112 -~~~~~~~~~~~~~------~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
......+.--||. +++.+.+.++ .--.=.+...++|.+.|.+....+.+....+.+...++...+=.
T Consensus 123 as~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy 197 (432)
T PF06963_consen 123 ASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEY 197 (432)
T ss_pred HHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 1111112222332 2233444444 33555667899999999999988888888877777777665433
No 263
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=93.82 E-value=0.98 Score=38.13 Aligned_cols=118 Identities=13% Similarity=0.080 Sum_probs=73.1
Q ss_pred CchhhHHHHHHHHH-HHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc-------cc---------------
Q psy3615 38 DSNVQNLVLGSFFW-LHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY-------WD--------------- 94 (211)
Q Consensus 38 s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~-------~~--------------- 94 (211)
+.+.+..+=....+ ...+...+-.+++|++++.++.-+....+.....++++... ++
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 44455555442222 44566777899999999999887666666555554443211 11
Q ss_pred -------HHHHHHHHHHHHhhhhcchH-HHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc
Q psy3615 95 -------YKAMAGLRIVQGVIGGLAWP-SMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID 155 (211)
Q Consensus 95 -------~~~~~~~~~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~ 155 (211)
.|.+.+..+..-+-.....+ .-..+.+|.++.+|-.+..+ +..+.++|..++..+..++.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111111112222 34678899999999999999 889999999999888888877
No 264
>KOG4332|consensus
Probab=93.75 E-value=1.9 Score=33.61 Aligned_cols=135 Identities=14% Similarity=0.057 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHHHhCCc--chhHHHHHHHHHHHHHhhhhh--cc---cHHHHHHHHHHHHhhhhcchH
Q psy3615 42 QNLVLGSFFWLHWSTQIPGGVLARSLGTK--VVFGVSNLAMFLISFALPAAA--YW---DYKAMAGLRIVQGVIGGLAWP 114 (211)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~r--~~~~~~~~~~~i~~~~~~~~~--~~---~~~~~~~~~~l~G~~~g~~~~ 114 (211)
-|.+.+.++++.++++-+..++..|-.+| ..+.+..++.++...+..+.. .+ +...-+++..+.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 48889999999999998888887765443 344454444444333322221 11 233334555556677889999
Q ss_pred HHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615 115 SMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV 176 (211)
Q Consensus 115 ~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~ 176 (211)
....+=++..|.+.|...+. +-..-++-..++-..-..-....+-|..|-++.....+..+.
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence 99999999999999999888 445555433332111000001134566777766665555443
No 265
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=93.09 E-value=0.33 Score=40.69 Aligned_cols=94 Identities=10% Similarity=-0.060 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHH--HHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHH
Q psy3615 41 VQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNL--AMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHH 118 (211)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~ 118 (211)
--|.+-++..+..++..+..|++-.++.+---+.++.+ +.+...+++... +|.|..+++.++.+.......+....
T Consensus 299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t--~~Iw~~Y~~yvlf~~~y~flitia~~ 376 (511)
T TIGR00806 299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQS--HDIWVLYVTYVLFRGIYQFLVPIATF 376 (511)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcc--cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888888889999999999776644323333333 333334445445 89999999999999999988888888
Q ss_pred HhhhccCCCchhhHhhhh
Q psy3615 119 LVAHWIPPTERSQFITSY 136 (211)
Q Consensus 119 ~~~~~~~~~~r~~~~~~~ 136 (211)
-+++....+.-|...|++
T Consensus 377 ~iA~~L~~~~~aLvFGiN 394 (511)
T TIGR00806 377 QIASSLSKELCALVFGIN 394 (511)
T ss_pred HHHHHhcccceEEEEecH
Confidence 888888877667777744
No 266
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=92.98 E-value=0.037 Score=48.11 Aligned_cols=62 Identities=11% Similarity=-0.015 Sum_probs=48.0
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHH-HHHHhhchhhHHHHHhC--CcchhHHHHHHHHHHHHH
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFW-LHWSTQIPGGVLARSLG--TKVVFGVSNLAMFLISFA 86 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G--~r~~~~~~~~~~~i~~~~ 86 (211)
..++.++++++|+++.+.+++.+...+ +.+++.+++|++.||++ .|+.+.++.++..++.++
T Consensus 351 ~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 351 TFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 345666778899999999999988776 67889999999999998 456666666666665433
No 267
>KOG0637|consensus
Probab=92.58 E-value=0.4 Score=39.72 Aligned_cols=132 Identities=13% Similarity=-0.026 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHh
Q psy3615 41 VQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLV 120 (211)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~ 120 (211)
.-.|-..++.+...+.+....++.||+|-|+.+..+...+.++..+.++. ++.......+-..|+-.+.........+
T Consensus 333 ~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~--~~~~~~~~~~~~~G~~~~~~~~~p~~l~ 410 (498)
T KOG0637|consen 333 MGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLV--LNTYVVLSHRSTAGILSSPLLTVPYGAL 410 (498)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhh--hhHHHHHHHHhhcceeecchhcccHHHH
Confidence 34555777888889999999999999997777777777677766666655 5666666677777754444443333333
Q ss_pred hhcc---------------------CCCch--hhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHH
Q psy3615 121 AHWI---------------------PPTER--SQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWW 174 (211)
Q Consensus 121 ~~~~---------------------~~~~r--~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~ 174 (211)
++.. .+..| |...+ .+....+.+++.....|.+.+..| -+..-...+++.+...
T Consensus 411 ~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~ 489 (498)
T KOG0637|consen 411 ALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIG 489 (498)
T ss_pred HHHHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHH
Confidence 3221 11223 33344 446666666666666666666554 3334444444444433
No 268
>KOG2325|consensus
Probab=92.09 E-value=0.4 Score=40.17 Aligned_cols=77 Identities=12% Similarity=0.197 Sum_probs=62.1
Q ss_pred HHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615 103 IVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 103 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~ 179 (211)
++.|++.-.......++.++...+++++...+ ......++..++|.+........|.|+.+.+.+...++...++..
T Consensus 396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~ 473 (488)
T KOG2325|consen 396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIV 473 (488)
T ss_pred heeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 44566666667778899999999999999999 779999999999999998888889888887777666655554443
No 269
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=91.53 E-value=7.6 Score=32.74 Aligned_cols=70 Identities=21% Similarity=0.203 Sum_probs=49.6
Q ss_pred HHHHhhhhcchHHHHHHhhhccCCC-chhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHH
Q psy3615 103 IVQGVIGGLAWPSMHHLVAHWIPPT-ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVV 172 (211)
Q Consensus 103 ~l~G~~~g~~~~~~~~~~~~~~~~~-~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~ 172 (211)
++.|+.....+...-..+.+.+|.+ +|...++ +....++...+...+.+.+.+..||.....+.-.+.++
T Consensus 274 i~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 274 IAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4455665666666667777777654 7888888 77776776666666778999999999877766655544
No 270
>KOG3810|consensus
Probab=91.45 E-value=1.6 Score=35.11 Aligned_cols=94 Identities=10% Similarity=-0.114 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhhh
Q psy3615 43 NLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAH 122 (211)
Q Consensus 43 ~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~ 122 (211)
|..-++..+..+++.+..|.+.-++.|..-++++......+.+++.....++.|..++..++.+.......+....-+++
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~ 353 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR 353 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence 56677788888899999999988777764444444444334443333434778888888888888888777788888888
Q ss_pred ccCCCchhhHhhhh
Q psy3615 123 WIPPTERSQFITSY 136 (211)
Q Consensus 123 ~~~~~~r~~~~~~~ 136 (211)
....+.-|...|++
T Consensus 354 nL~~e~~gLvFGiN 367 (433)
T KOG3810|consen 354 NLSSELFGLVFGIN 367 (433)
T ss_pred hhhhhhheeeeehH
Confidence 88777777777744
No 271
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=90.90 E-value=1.5 Score=36.41 Aligned_cols=108 Identities=12% Similarity=0.022 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHHHhCCc--chhHH--HHHHHHHHHHHhhhh-------hcccHHHHHHHHHHHHhhhh
Q psy3615 42 QNLVLGSFFWLHWSTQIPGGVLARSLGTK--VVFGV--SNLAMFLISFALPAA-------AYWDYKAMAGLRIVQGVIGG 110 (211)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~r--~~~~~--~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~l~G~~~g 110 (211)
.-.+...++++..+|..+..+..- -++| ++.+. .=+++....++|..- ..++-+..++..++.|+..|
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 345667788888888875544311 1222 33221 122233332333211 11355667788999999999
Q ss_pred cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhh
Q psy3615 111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLC 150 (211)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~ 150 (211)
........+..+..++++|..+.. ...+-.+|..+|..++
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888877776 5566667766666554
No 272
>KOG3626|consensus
Probab=90.70 E-value=0.31 Score=42.77 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=93.4
Q ss_pred ccccccccCCCcccccCCchhhHHHHHHHHHH-HHHhhchhhHHHHHhC--CcchhHHHHHHHHHHHHHhh---h-----
Q psy3615 21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWL-HWSTQIPGGVLARSLG--TKVVFGVSNLAMFLISFALP---A----- 89 (211)
Q Consensus 21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~-~~i~~~~~g~l~dr~G--~r~~~~~~~~~~~i~~~~~~---~----- 89 (211)
.+...+++.++..+|+++.+....+++...+. .+++..++|++..|+. .|....+.++...+..+... +
T Consensus 409 ~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~ 488 (735)
T KOG3626|consen 409 TGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCES 488 (735)
T ss_pred hhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCC
Confidence 34456788889999999999999888665554 4677889999999874 45555555554444433311 0
Q ss_pred -----------------h-h------------------------------------------c------------c----
Q psy3615 90 -----------------A-A------------------------------------------Y------------W---- 93 (211)
Q Consensus 90 -----------------~-~------------------------------------------~------------~---- 93 (211)
. . . +
T Consensus 489 ~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~ 568 (735)
T KOG3626|consen 489 SPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKN 568 (735)
T ss_pred CcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccC
Confidence 0 0 0 0
Q ss_pred ----------------cHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhc
Q psy3615 94 ----------------DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVID 155 (211)
Q Consensus 94 ----------------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~ 155 (211)
.+..+++..++.-+..+...+..+.++-+..++++|..++| .. ....+|.+-+|++.|+++|
T Consensus 569 ~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID 648 (735)
T KOG3626|consen 569 GNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVID 648 (735)
T ss_pred CCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHh
Confidence 12334444444445545555667778889999999999999 44 7788899999999999987
Q ss_pred c
Q psy3615 156 T 156 (211)
Q Consensus 156 ~ 156 (211)
.
T Consensus 649 ~ 649 (735)
T KOG3626|consen 649 T 649 (735)
T ss_pred h
Confidence 5
No 273
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=89.79 E-value=9 Score=32.35 Aligned_cols=119 Identities=13% Similarity=0.011 Sum_probs=78.4
Q ss_pred CchhhHHHHHHHHH-HHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc-------c---------------
Q psy3615 38 DSNVQNLVLGSFFW-LHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW-------D--------------- 94 (211)
Q Consensus 38 s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~-------~--------------- 94 (211)
+++.+.++=+..-+ +.++..++..++.+++.+.+++-+-+..+....+++++...+ +
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 34556666665555 667888889999999999999887777777766666654321 1
Q ss_pred --------HHHHHHHHHHHHhhhhcchH-HHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc
Q psy3615 95 --------YKAMAGLRIVQGVIGGLAWP-SMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT 156 (211)
Q Consensus 95 --------~~~~~~~~~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~ 156 (211)
.|...+..+..=+=.....+ .-.....|.+..+|-.|..+ ++.+.+++..++..+..++.++
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 01111111111111122222 34567788888899999999 8899999998888888888763
No 274
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=88.99 E-value=2.4 Score=34.93 Aligned_cols=92 Identities=7% Similarity=-0.066 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHH--HHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHH
Q psy3615 41 VQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAM--FLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHH 118 (211)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~ 118 (211)
--|.+.+...+..+++.+..|++..++.+..-+.++.... +...+++... ++.|...++.++.+.......+....
T Consensus 286 YNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t--~~Iwv~Y~~yIif~~~y~fliTiA~~ 363 (412)
T PF01770_consen 286 YNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT--GNIWVCYAGYIIFRSLYMFLITIASF 363 (412)
T ss_pred cchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888889999999999999977776644444444333 3344455445 78999999999888887777777777
Q ss_pred HhhhccCCCchhhHhh
Q psy3615 119 LVAHWIPPTERSQFIT 134 (211)
Q Consensus 119 ~~~~~~~~~~r~~~~~ 134 (211)
-++.....+.-+...|
T Consensus 364 qIA~~l~~e~yaLVFG 379 (412)
T PF01770_consen 364 QIAKNLSEERYALVFG 379 (412)
T ss_pred HHHHhccccceeeeee
Confidence 7777777666665555
No 275
>KOG3880|consensus
Probab=88.43 E-value=1.3 Score=35.13 Aligned_cols=135 Identities=10% Similarity=0.041 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhh
Q psy3615 42 QNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVA 121 (211)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~ 121 (211)
.|.+...-.+-..+..+......||+....=+.+...+.+.+.++.++. ++.++-+.+-.+..++.|.....-..+.+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs--~s~~~sL~GV~~aSissGlGEiTFL~lss 141 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFS--NSVPMSLLGVVFASISSGLGEITFLALSS 141 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEec--cchhHHHhhhhhhhhcCCcceeehhhhhc
Confidence 3444444455556667777778888754444455556667777788777 77787777777777777765444444333
Q ss_pred hccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc--ccCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615 122 HWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID--TLGWEAAFYVTGALGVVWWVVWMIVVYD 183 (211)
Q Consensus 122 ~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~--~~gw~~~~~~~~~~~~~~~~~~~~~~~~ 183 (211)
. +++. ..+ +..+...++.+|..-=..+.+ ...-|.+.+++..+..+..+..++.+++
T Consensus 142 ~-Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~ 201 (409)
T KOG3880|consen 142 R-YPSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS 201 (409)
T ss_pred c-CCCc----eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence 2 2222 222 333333333333322222333 2345777777777776666666655544
No 276
>KOG1479|consensus
Probab=87.40 E-value=2.9 Score=34.30 Aligned_cols=107 Identities=16% Similarity=0.056 Sum_probs=65.3
Q ss_pred hHHHHHH-HHHHHHHhhchhhHHHHHhCCcchhHHHHH-HHHHHHHHhhh-----hhcccHHHHHHHHHHHHhhhhcchH
Q psy3615 42 QNLVLGS-FFWLHWSTQIPGGVLARSLGTKVVFGVSNL-AMFLISFALPA-----AAYWDYKAMAGLRIVQGVIGGLAWP 114 (211)
Q Consensus 42 ~~~~~~~-~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~-~~~i~~~~~~~-----~~~~~~~~~~~~~~l~G~~~g~~~~ 114 (211)
.-..... +++...+|.+...++.++- ||+..+.... ...+..+.+.- ....+-++++....+.|+..|-...
T Consensus 284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts 362 (406)
T KOG1479|consen 284 ALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS 362 (406)
T ss_pred HHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence 3444455 8888888877766665543 3333332222 22222222111 0114567788899999999999989
Q ss_pred HHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhh
Q psy3615 115 SMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPL 149 (211)
Q Consensus 115 ~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~ 149 (211)
..+.+..+-.|++++-.+.. .......|...|..+
T Consensus 363 l~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 363 LIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred heehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999988887766655 445555555555443
No 277
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=86.75 E-value=5.7 Score=33.68 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=32.9
Q ss_pred HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhh
Q psy3615 104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV 153 (211)
Q Consensus 104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l 153 (211)
+.-+-.+..-.++-.+.-....+++++.+.. -..+.+.|..++..+.-.+
T Consensus 127 ~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 127 ILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred HHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence 4444445555566667777778888888887 6677777777766654443
No 278
>KOG3880|consensus
Probab=86.55 E-value=3.9 Score=32.52 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=53.6
Q ss_pred HHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhh
Q psy3615 84 SFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV 153 (211)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l 153 (211)
-.+..+. ++++...+.-+.-|+-.|..+....--+.+-.++++|-.+++ ....-++|..++..++-.+
T Consensus 333 ~a~~~ft--psi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 333 QAWYWFT--PSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHhc--cHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 3344445 778888888888898888888888888888888899999999 8788888888777665433
No 279
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.32 E-value=2.1 Score=27.91 Aligned_cols=25 Identities=20% Similarity=0.018 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHh
Q psy3615 43 NLVLGSFFWLHWSTQIPGGVLARSL 67 (211)
Q Consensus 43 ~~~~~~~~~~~~i~~~~~g~l~dr~ 67 (211)
+.-.+.-+++..+.....||+.|||
T Consensus 45 a~klssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345566777777788889999997
No 280
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=86.23 E-value=0.28 Score=38.64 Aligned_cols=107 Identities=10% Similarity=0.035 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHhhchhhHHHHH-hCCcchhHH--HHHHHHHHHHHhhhh--------hcccHHHHHHHHHHHHhhhhcc
Q psy3615 44 LVLGSFFWLHWSTQIPGGVLARS-LGTKVVFGV--SNLAMFLISFALPAA--------AYWDYKAMAGLRIVQGVIGGLA 112 (211)
Q Consensus 44 ~~~~~~~~~~~i~~~~~g~l~dr-~G~r~~~~~--~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~l~G~~~g~~ 112 (211)
.+...++++..+|..+.++..-+ ..+|++... .=+++....+++-.. ..++-+.+++..++.|+..|..
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 34667889999999887764322 134444432 122222222222111 0134466677889999999999
Q ss_pred hHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhh
Q psy3615 113 WPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLC 150 (211)
Q Consensus 113 ~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~ 150 (211)
......+..+..++++|..+.. ......+|..+|..++
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888877766 5566666766665554
No 281
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=85.27 E-value=8.7 Score=32.63 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=45.7
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc
Q psy3615 99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT 156 (211)
Q Consensus 99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~ 156 (211)
++...+..+..-..+.+..+.-+++.+|..-|+.|. .++..++|+---..+.-+++|.
T Consensus 409 I~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 409 IIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 344555556666778889999999999999999999 8899999987766666666554
No 282
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=84.86 E-value=20 Score=29.98 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhhhhhcchhhhhhh
Q psy3615 95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALS 146 (211)
Q Consensus 95 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~ 146 (211)
++..++.-++.|++.+........+.+ .+|++.-.. +..+.++++.++
T Consensus 106 f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~~~a---~~~G~g~aGv~~ 153 (437)
T TIGR00939 106 FVTTMASVVIINSGMALLQGSLFGLAG-VFPSTYSSA---VMSGQGLAGVLT 153 (437)
T ss_pred HHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHHHHH---HHhcchhHHHHH
Confidence 555666777888888887777777766 455443222 334444444443
No 283
>KOG3097|consensus
Probab=82.99 E-value=1.2 Score=35.56 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=54.7
Q ss_pred HHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccC
Q psy3615 49 FFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIP 125 (211)
Q Consensus 49 ~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~ 125 (211)
..+..+.++++.+.+..++|-|+++.++...+......-. .+.+..++......|++.+..+...-+++++.-.
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl---~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANL---EPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc---chhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 3445566777777999999999999988777765443321 2567788899999999999888777766665543
No 284
>KOG3810|consensus
Probab=79.66 E-value=1.6 Score=35.11 Aligned_cols=100 Identities=16% Similarity=0.052 Sum_probs=69.3
Q ss_pred HHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHh
Q psy3615 54 WSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFI 133 (211)
Q Consensus 54 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~ 133 (211)
.+.-.+.=.+.|..-.|++++.-.+.......+..+. ++.+.+=+.-+..|...+ ...+.++++-+..+++++-++.
T Consensus 56 Lv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g--~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt 132 (433)
T KOG3810|consen 56 LVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFG--PSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVT 132 (433)
T ss_pred HHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhc--CCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHH
Confidence 3444444568999999999887766666655555555 777777777777777654 3456677777888888888887
Q ss_pred h-hhhcchhhhhhhhhhhhhhhcc
Q psy3615 134 T-SYLGSSFGVALSYPLCGVVIDT 156 (211)
Q Consensus 134 ~-~~~~~~~g~~~~~~~~~~l~~~ 156 (211)
+ .-...-.|...|..++..++..
T Consensus 133 ~y~RaA~L~g~~~g~vlaQlLvs~ 156 (433)
T KOG3810|consen 133 GYCRAAFLVGKFVGSVLAQLLVSL 156 (433)
T ss_pred HHhHHHHHHHhHHHhHHHHHHhhh
Confidence 7 5566666666776666666543
No 285
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=79.05 E-value=3.8 Score=26.67 Aligned_cols=51 Identities=6% Similarity=-0.108 Sum_probs=41.9
Q ss_pred chhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh
Q psy3615 39 SNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA 89 (211)
Q Consensus 39 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~ 89 (211)
++..|-+.+.|.-.+.+.++++++..|+..+-+-=.+|..++.++.....+
T Consensus 53 p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 53 PAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred cccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 467789999999999999999999999998887777777777766655543
No 286
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=78.25 E-value=33 Score=28.04 Aligned_cols=87 Identities=9% Similarity=0.054 Sum_probs=54.2
Q ss_pred cCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHH-------HHHHHHHHHhhhhhcccHHHHHHHHHHHHhh
Q psy3615 36 HWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSN-------LAMFLISFALPAAAYWDYKAMAGLRIVQGVI 108 (211)
Q Consensus 36 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~ 108 (211)
|=+.-+.+.+.+.|...+.+++...-++.|.--.-+.+..-. +...+..+.++.-..++-+.+++.-++.|.-
T Consensus 39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L 118 (508)
T COG4262 39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL 118 (508)
T ss_pred CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 334457788888888888888887777666432222221111 1112222223222224567788888999998
Q ss_pred hhcchHHHHHHhhh
Q psy3615 109 GGLAWPSMHHLVAH 122 (211)
Q Consensus 109 ~g~~~~~~~~~~~~ 122 (211)
.|...|..+.+..+
T Consensus 119 VG~EiPL~mrml~~ 132 (508)
T COG4262 119 VGAEIPLLMRMLQR 132 (508)
T ss_pred HhcchHHHHHHHHH
Confidence 89999998888877
No 287
>PRK02237 hypothetical protein; Provisional
Probab=75.26 E-value=7.6 Score=25.40 Aligned_cols=50 Identities=2% Similarity=-0.214 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh
Q psy3615 40 NVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA 89 (211)
Q Consensus 40 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~ 89 (211)
+..|-+.+.|.-.+.+.++++++..|+..+-+-=.+|..++.++..+..+
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 45889999999999999999999999998877777777777666655433
No 288
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=75.09 E-value=36 Score=26.31 Aligned_cols=81 Identities=7% Similarity=-0.046 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhhchhhHHHH-HhCCcchhH----HHHHHHHHHHHHh-hhhhcc--cHHHHHHHHHHHHhhhhcchH
Q psy3615 43 NLVLGSFFWLHWSTQIPGGVLAR-SLGTKVVFG----VSNLAMFLISFAL-PAAAYW--DYKAMAGLRIVQGVIGGLAWP 114 (211)
Q Consensus 43 ~~~~~~~~~~~~i~~~~~g~l~d-r~G~r~~~~----~~~~~~~i~~~~~-~~~~~~--~~~~~~~~~~l~G~~~g~~~~ 114 (211)
.....++..+..++....|.... ++.||+.+. .+.++..+..+.. .....+ +...+++..++.|++.=+.++
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34445566666777777888776 456666554 2233333333332 111111 355677777777776533444
Q ss_pred HHHHHhhhc
Q psy3615 115 SMHHLVAHW 123 (211)
Q Consensus 115 ~~~~~~~~~ 123 (211)
....+-.|.
T Consensus 224 ViL~lPhEy 232 (267)
T PF07672_consen 224 VILNLPHEY 232 (267)
T ss_pred HHhcChhhh
Confidence 444444443
No 289
>KOG3574|consensus
Probab=73.85 E-value=9.4 Score=31.46 Aligned_cols=59 Identities=15% Similarity=0.005 Sum_probs=46.0
Q ss_pred HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCc
Q psy3615 101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGW 159 (211)
Q Consensus 101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw 159 (211)
...+.+...-..+...++..+++.+++..|+.|+ .++..++|+.--..+..++.|..+|
T Consensus 375 ~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv 434 (510)
T KOG3574|consen 375 SYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTV 434 (510)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCce
Confidence 3455555555567778889999999999999999 8899999987777777777775443
No 290
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=72.85 E-value=59 Score=27.72 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=47.4
Q ss_pred HHHHhhhhcchHHHHHHhhhccCCC-chhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHH
Q psy3615 103 IVQGVIGGLAWPSMHHLVAHWIPPT-ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWW 174 (211)
Q Consensus 103 ~l~G~~~g~~~~~~~~~~~~~~~~~-~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~ 174 (211)
+..|+.........-..+.+.+|.+ ++...+| +....++-..+-..+++.+.++.||+..-.+.-.+.++..
T Consensus 290 i~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~ 363 (491)
T PF03219_consen 290 IAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG 363 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence 3345555555666666677777654 5677777 6655555555555788889999999987776655544433
No 291
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=72.64 E-value=27 Score=27.21 Aligned_cols=34 Identities=12% Similarity=-0.130 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhh
Q psy3615 76 SNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGG 110 (211)
Q Consensus 76 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g 110 (211)
+.+++++..++..+.. ++.+.+.+.-++.+++.+
T Consensus 5 ~~~~~~~~s~~~~l~~-~~~~l~~~~~~~~~F~~~ 38 (284)
T PF12805_consen 5 TLLCFALASLLVGLLF-PYPWLLILVLALLTFFFG 38 (284)
T ss_pred HHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHH
Confidence 3334434444443331 334455444444454443
No 292
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=71.61 E-value=38 Score=24.93 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=18.9
Q ss_pred HHHHHHHHhhchhhHHH---HHhCCcchhHHHHHHHHHHHHH
Q psy3615 48 SFFWLHWSTQIPGGVLA---RSLGTKVVFGVSNLAMFLISFA 86 (211)
Q Consensus 48 ~~~~~~~i~~~~~g~l~---dr~G~r~~~~~~~~~~~i~~~~ 86 (211)
....+..++...++.+. ++..+|+.....+.+..+....
T Consensus 54 ~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll~~ 95 (209)
T PF06912_consen 54 LAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLLEAILLLI 95 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence 33444455556666662 2334455555555444444433
No 293
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=64.55 E-value=20 Score=23.37 Aligned_cols=26 Identities=27% Similarity=0.180 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhchhhHHHHHhCCcc
Q psy3615 46 LGSFFWLHWSTQIPGGVLARSLGTKV 71 (211)
Q Consensus 46 ~~~~~~~~~i~~~~~g~l~dr~G~r~ 71 (211)
.....++..++....+.+.|..|.+.
T Consensus 93 ~~~~~~g~~~~~~~~~~~~~~~~~~~ 118 (141)
T TIGR00880 93 SAGIALGPLLGPPLGGVLAQFLGWRA 118 (141)
T ss_pred HHhHHHHHHHhHHhHHHHhcccchHH
Confidence 33344444444444444444444333
No 294
>KOG1479|consensus
Probab=63.05 E-value=60 Score=26.90 Aligned_cols=35 Identities=9% Similarity=0.108 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchh
Q psy3615 95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERS 130 (211)
Q Consensus 95 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~ 130 (211)
++..++.-.+.+.+.+..+.......++ +|++.-.
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytq 151 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQ 151 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHH
Confidence 4455566667777777666666665544 4555443
No 295
>COG4769 Predicted membrane protein [Function unknown]
Probab=58.73 E-value=24 Score=25.08 Aligned_cols=51 Identities=6% Similarity=-0.145 Sum_probs=32.2
Q ss_pred HHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615 49 FFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGV 107 (211)
Q Consensus 49 ~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~ 107 (211)
+.+...+.+.+.-++..++|+|.+-.++.-..+ ++. +|..++++.+++.+-
T Consensus 82 ~sfaG~i~S~L~m~~l~~f~~k~~S~lgiS~mG------aF~--hNl~QLivas~Lv~~ 132 (181)
T COG4769 82 YSFAGAILSTLFMYFLYQFGPKYLSLLGISVMG------AFT--HNLGQLIVASFLVFT 132 (181)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEeeeehhhHH------HHH--HhHHHHHHHHHHHhc
Confidence 445556666677778889998887554443322 123 667777777776653
No 296
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=57.87 E-value=88 Score=28.07 Aligned_cols=52 Identities=12% Similarity=-0.168 Sum_probs=31.9
Q ss_pred hhhHHHHH----hCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615 59 PGGVLARS----LGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL 111 (211)
Q Consensus 59 ~~g~l~dr----~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 111 (211)
+.+-+.|. -||.+-++++..+++++.+...+.. +..+.+...-++.+++.+.
T Consensus 42 ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~-~~p~~~~~~l~~~tf~~~m 97 (701)
T TIGR01667 42 IAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLF-PKPWLFPFLLTLLTFGFIL 97 (701)
T ss_pred HhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHH
Confidence 34445553 3567778888888888877766542 3455555555555555443
No 297
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=53.71 E-value=16 Score=23.91 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=21.7
Q ss_pred hcccCchHHHHHHHHHHHHHHHHHHhhhcCC
Q psy3615 154 IDTLGWEAAFYVTGALGVVWWVVWMIVVYDT 184 (211)
Q Consensus 154 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (211)
.+..+|+.+|++...++++.+.+.+.+.||.
T Consensus 54 ~d~e~we~~~f~~~~~~~v~~~~~~~y~PD~ 84 (105)
T PF10183_consen 54 RDWEGWELPFFFGFSGSLVFGGVFLAYKPDT 84 (105)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3456899999887777776666666666654
No 298
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=53.26 E-value=1.2e+02 Score=27.31 Aligned_cols=50 Identities=12% Similarity=-0.146 Sum_probs=30.2
Q ss_pred hhHHHHH----hCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhh
Q psy3615 60 GGVLARS----LGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGG 110 (211)
Q Consensus 60 ~g~l~dr----~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g 110 (211)
.+-++|. -||.+-+++..++++++.+...+.. +..|.+...-++.+++.+
T Consensus 43 a~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~-~~p~lf~~~l~~~tf~~~ 96 (704)
T TIGR01666 43 AAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLF-GKPWLFAVGLTVSTFGFI 96 (704)
T ss_pred hhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHH
Confidence 3445553 3566667788888887777665542 445566555555555544
No 299
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=52.82 E-value=71 Score=23.27 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhchhhHHHHHhCC
Q psy3615 47 GSFFWLHWSTQIPGGVLARSLGT 69 (211)
Q Consensus 47 ~~~~~~~~i~~~~~g~l~dr~G~ 69 (211)
.-|.+++.+...+.|++.||..+
T Consensus 89 gGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 89 GGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhc
Confidence 44677888888999999999875
No 300
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=48.64 E-value=1.5e+02 Score=24.19 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=64.0
Q ss_pred HHHHHhhchhhHHHHHhC--CcchhHHHHHHHHHHHHHhhhhhcccHH----------HH-----HHH----HHHHHhhh
Q psy3615 51 WLHWSTQIPGGVLARSLG--TKVVFGVSNLAMFLISFALPAAAYWDYK----------AM-----AGL----RIVQGVIG 109 (211)
Q Consensus 51 ~~~~i~~~~~g~l~dr~G--~r~~~~~~~~~~~i~~~~~~~~~~~~~~----------~~-----~~~----~~l~G~~~ 109 (211)
+..++.++++-.+.|..| ++-....+..+..++.++....-..|+. .+ .+. -.++|+.+
T Consensus 174 ~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~ril~LG~~q 253 (354)
T PF05631_consen 174 VVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAILSDPRILLLGLIQ 253 (354)
T ss_pred HHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHHHcCchhHHHHHHH
Confidence 344555556666777765 5667777777777766655422111110 10 111 14578888
Q ss_pred hcchHHHHHHhhhccCCCc---hhhHhh-hhhcchhhhhhhhhhhhhhhc
Q psy3615 110 GLAWPSMHHLVAHWIPPTE---RSQFIT-SYLGSSFGVALSYPLCGVVID 155 (211)
Q Consensus 110 g~~~~~~~~~~~~~~~~~~---r~~~~~-~~~~~~~g~~~~~~~~~~l~~ 155 (211)
+.....++..+-.|.|.-+ +..-.| ++.......++|..+...+..
T Consensus 254 slFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s 303 (354)
T PF05631_consen 254 SLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLS 303 (354)
T ss_pred HHHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888999999999988543 344456 666666677777766655444
No 301
>PRK10263 DNA translocase FtsK; Provisional
Probab=48.36 E-value=1.1e+02 Score=29.69 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=7.3
Q ss_pred hhhhhhhhhhhhhcccC
Q psy3615 142 GVALSYPLCGVVIDTLG 158 (211)
Q Consensus 142 g~~~~~~~~~~l~~~~g 158 (211)
|+++|..+...+...+|
T Consensus 143 GGIIG~lLs~lL~~LfG 159 (1355)
T PRK10263 143 GGVIGSLLSTTLQPLLH 159 (1355)
T ss_pred cchHHHHHHHHHHHHHh
Confidence 44444444444444333
No 302
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=45.24 E-value=55 Score=18.24 Aligned_cols=35 Identities=14% Similarity=-0.014 Sum_probs=19.1
Q ss_pred HHHHHHHHhhchhhHHHHH-hCCcchhHHHHHHHHH
Q psy3615 48 SFFWLHWSTQIPGGVLARS-LGTKVVFGVSNLAMFL 82 (211)
Q Consensus 48 ~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~i 82 (211)
.......+.....|+..|+ ++.++...+..++.++
T Consensus 8 ~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~ 43 (55)
T PF09527_consen 8 FTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGI 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3444455556667777774 5665555544444433
No 303
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=45.15 E-value=2.5e+02 Score=25.80 Aligned_cols=30 Identities=3% Similarity=-0.126 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHhhchhhHHHHHhCC
Q psy3615 40 NVQNLVLGSFFWLHWSTQIPGGVLARSLGT 69 (211)
Q Consensus 40 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~ 69 (211)
+..-+...+......+..++..++.+|..-
T Consensus 9 ~~~~l~~~~lG~~lll~~l~s~~lkeRl~L 38 (810)
T TIGR00844 9 TKAHVAYSCVGIFSSIFSLVSLFVKEKLYI 38 (810)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 334444555555555666666666666543
No 304
>KOG3097|consensus
Probab=44.51 E-value=24 Score=28.49 Aligned_cols=99 Identities=12% Similarity=-0.021 Sum_probs=57.7
Q ss_pred CCCccccccccccccccCCCcccc---cCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHH-Hh
Q psy3615 12 SQSPISLSSRGVLFQQDGDSGSLF---HWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISF-AL 87 (211)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~i~~~~---~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~-~~ 87 (211)
...|+..+...-..++-.+..+.+ ++..+.++..+.++.++.++.+.+.|.+..++||-+....+.+.--.-.. ..
T Consensus 279 llvP~tif~GleqaF~~~~fTk~~V~c~~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li~~~~ 358 (390)
T KOG3097|consen 279 LLVPLTIFSGLEQAFLCADFTKAYVACALGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLITILF 358 (390)
T ss_pred eeehhhhhhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHH
Confidence 334444443333333333333333 23455788999999999999999999999999999888766555332211 11
Q ss_pred hhhh-cccHHHHHHHHHHHHhhhh
Q psy3615 88 PAAA-YWDYKAMAGLRIVQGVIGG 110 (211)
Q Consensus 88 ~~~~-~~~~~~~~~~~~l~G~~~g 110 (211)
.+.. ..+.+.+.+.-.+.|.+.+
T Consensus 359 ~w~~~~~~~~i~y~~aalwgv~d~ 382 (390)
T KOG3097|consen 359 FWAPNPQDSWIFYVAAALWGVGDA 382 (390)
T ss_pred hcccCCCCceEEEeehhhcCccHH
Confidence 1111 1234445555555555543
No 305
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=43.63 E-value=49 Score=19.01 Aligned_cols=25 Identities=28% Similarity=0.603 Sum_probs=17.6
Q ss_pred cCchHHHHHHHHHHHHHHHHHHhhh
Q psy3615 157 LGWEAAFYVTGALGVVWWVVWMIVV 181 (211)
Q Consensus 157 ~gw~~~~~~~~~~~~~~~~~~~~~~ 181 (211)
-|||....+.+.++++.+.+.-...
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Ypi~~ 27 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALYPIYF 27 (58)
T ss_pred ccccchhhHHHHHHHHHHHHhhhhc
Confidence 3799888888888877666544433
No 306
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=42.23 E-value=15 Score=24.91 Aligned_cols=13 Identities=0% Similarity=0.140 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHH
Q psy3615 160 EAAFYVTGALGVV 172 (211)
Q Consensus 160 ~~~~~~~~~~~~~ 172 (211)
||++++..++.++
T Consensus 1 RW~l~~iii~~i~ 13 (130)
T PF12273_consen 1 RWVLFAIIIVAIL 13 (130)
T ss_pred CeeeHHHHHHHHH
Confidence 3444444333333
No 307
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=38.12 E-value=11 Score=29.79 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHhhhhcchHHHHHHhhhccCCCc
Q psy3615 103 IVQGVIGGLAWPSMHHLVAHWIPPTE 128 (211)
Q Consensus 103 ~l~G~~~g~~~~~~~~~~~~~~~~~~ 128 (211)
++.|.+.+..+.....+.+. +|++.
T Consensus 5 ~~~~~~~~~~q~s~~glas~-~p~~y 29 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASL-FPPKY 29 (309)
T ss_dssp --------------------------
T ss_pred EEEHhhhHHHhccHHHHHhc-CCHHH
Confidence 44566666666777777665 55443
No 308
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=36.81 E-value=2.5e+02 Score=23.38 Aligned_cols=22 Identities=9% Similarity=-0.342 Sum_probs=11.3
Q ss_pred HHHhhchhhHHHHHhCCcchhH
Q psy3615 53 HWSTQIPGGVLARSLGTKVVFG 74 (211)
Q Consensus 53 ~~i~~~~~g~l~dr~G~r~~~~ 74 (211)
...+..+...+.|+.-.||.-.
T Consensus 235 A~a~g~l~~~~~~~~~~gk~~~ 256 (403)
T TIGR00836 235 AAAAGGLTWLLIDWLKHGKPTL 256 (403)
T ss_pred HHHHHHHHHHHHHHHhcCCCCH
Confidence 3444445556677665444333
No 309
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=36.77 E-value=1.1e+02 Score=21.63 Aligned_cols=47 Identities=6% Similarity=0.053 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhh
Q psy3615 94 DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGV 143 (211)
Q Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~ 143 (211)
.+..++....+.|+|. ....+.+++..-++++-|..+| -.+-.+++-
T Consensus 96 ~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSllG~~e~~~N~~r 143 (153)
T PF11947_consen 96 PWAVLLVSLVFFGLGL---LGISYGILSASWDPEREGSLLGWEEFKRNWGR 143 (153)
T ss_pred chHHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCcccHHHHHHhHHH
Confidence 3445555555555543 2345566666666677887777 335555443
No 310
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=36.12 E-value=1e+02 Score=22.39 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=29.3
Q ss_pred cchHHHHHHhhhccCCCchhhHhhhh-hcchhhhhhhhhhhhhhhcccCchHHHHHHHHH
Q psy3615 111 LAWPSMHHLVAHWIPPTERSQFITSY-LGSSFGVALSYPLCGVVIDTLGWEAAFYVTGAL 169 (211)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~ 169 (211)
.-.....+.+.+..|+++|.++.-+. .+..+--.+--.++.++.+. |++..++.++.
T Consensus 12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~--~~~i~~igG~~ 69 (183)
T PF03741_consen 12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSI--FPWILLIGGLF 69 (183)
T ss_pred hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 34456677778889987776655422 11122223333455566664 24444444333
No 311
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=34.96 E-value=43 Score=25.92 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=30.4
Q ss_pred CchhhHhh-hhhcchhhhhhhhhhhhhh---hc--ccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615 127 TERSQFIT-SYLGSSFGVALSYPLCGVV---ID--TLGWEAAFYVTGALGVVWWVVWMIV 180 (211)
Q Consensus 127 ~~r~~~~~-~~~~~~~g~~~~~~~~~~l---~~--~~gw~~~~~~~~~~~~~~~~~~~~~ 180 (211)
++|+.... ...+.++|..+.-...-.. .+ ..+|++.+.+.+++.++-+++..++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555 3366777766543332111 11 1359998888887776666555544
No 312
>COG2119 Predicted membrane protein [Function unknown]
Probab=34.88 E-value=86 Score=22.88 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=26.4
Q ss_pred HHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHH
Q psy3615 49 FFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISF 85 (211)
Q Consensus 49 ~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~ 85 (211)
..+...++-..+.++++|+..|++-.++.+++.+..+
T Consensus 143 ~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal 179 (190)
T COG2119 143 MILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFAL 179 (190)
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 3445556667778889999999988877777655443
No 313
>PF10101 DUF2339: Predicted membrane protein (DUF2339); InterPro: IPR019286 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=33.63 E-value=2.6e+02 Score=25.07 Aligned_cols=106 Identities=13% Similarity=0.046 Sum_probs=51.3
Q ss_pred hCCcchhHHHHHHHHHHHHHhh-hhhcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhh
Q psy3615 67 LGTKVVFGVSNLAMFLISFALP-AAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVA 144 (211)
Q Consensus 67 ~G~r~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~ 144 (211)
+|.|+...+|.+...++..... ++. ++-+.=-..|+..|...|.. .....++..+++ .+..+ ...+..++..
T Consensus 1 ig~n~l~~iG~~~l~lG~~fl~kya~-~~g~l~p~~Rv~~g~~~g~~----l~~~g~~l~~k~-~~~~~~~L~g~G~a~l 74 (745)
T PF10101_consen 1 IGGNWLVRIGILVLLLGVVFLLKYAI-DAGWLGPAVRVALGAALGLA----LLAAGERLRRKG-YRAFAQALAGGGIAVL 74 (745)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHH-HcCcCCHHHHHHHHHHHHHH----HHHHHHHHHHcc-cchHHHHHHHHHHHHH
Confidence 3566677777777766655432 222 22233345677777766543 333445554332 13333 3333333333
Q ss_pred hhhhhh-hhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 145 LSYPLC-GVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 145 ~~~~~~-~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
...... ..+.+..+....|.....+......+..
T Consensus 75 y~t~~aa~~~y~l~~~~~af~~~~~v~~~~~~la~ 109 (745)
T PF10101_consen 75 YLTVFAAYHLYGLIPPPVAFALLALVTAAAVALAL 109 (745)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 322222 2333444555666665555555544443
No 314
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=32.93 E-value=1.9e+02 Score=20.96 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=21.2
Q ss_pred HHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHh
Q psy3615 53 HWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFAL 87 (211)
Q Consensus 53 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~ 87 (211)
..++.++.=.+..|.++|.++.+...+.++..++.
T Consensus 41 ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~ 75 (186)
T PF09605_consen 41 ALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLM 75 (186)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 33444455556777777777776666666554443
No 315
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=32.72 E-value=1.1e+02 Score=18.13 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=15.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q psy3615 158 GWEAAFYVTGALGVVWWVVWMIVVYDTPDQHP 189 (211)
Q Consensus 158 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (211)
||...+.+...+.++..-..-..+||..+..+
T Consensus 29 g~Aav~~~~~~~~l~~~~~iG~~LPe~s~~aP 60 (67)
T PF11511_consen 29 GYAAVFFLGLWFLLVALYFIGLLLPERSRQAP 60 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSTTTCSS-S
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccCC
Confidence 45555555444444444444455677655433
No 316
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=31.83 E-value=2.3e+02 Score=25.33 Aligned_cols=57 Identities=11% Similarity=-0.038 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhh
Q psy3615 95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCG 151 (211)
Q Consensus 95 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~ 151 (211)
.++.+.-.++.+.+.........-...+-.|++-+....+ +.....+|..+...+..
T Consensus 565 ~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~ 622 (654)
T TIGR00926 565 ILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAE 622 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777776666666666777788888888888 66888888887666543
No 317
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=31.40 E-value=36 Score=22.17 Aligned_cols=48 Identities=2% Similarity=-0.175 Sum_probs=34.3
Q ss_pred chhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHH
Q psy3615 39 SNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFA 86 (211)
Q Consensus 39 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~ 86 (211)
....|-..+.|.-.+.+.++.+++..|+.-+-+-=.+|..++.++...
T Consensus 54 ~~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~v 101 (109)
T COG1742 54 AAAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAV 101 (109)
T ss_pred chhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceee
Confidence 345677778888888889999999999877766656665555544433
No 318
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=31.03 E-value=3.3e+02 Score=23.07 Aligned_cols=16 Identities=19% Similarity=-0.085 Sum_probs=9.3
Q ss_pred hhhHHHHHhCCcchhH
Q psy3615 59 PGGVLARSLGTKVVFG 74 (211)
Q Consensus 59 ~~g~l~dr~G~r~~~~ 74 (211)
....+..|+++|+-..
T Consensus 103 ~v~~l~k~l~~~~~~~ 118 (465)
T PF03606_consen 103 LVNLLIKPLKGKKNPL 118 (465)
T ss_pred HHHHHHHHhcCCcchh
Confidence 4456677776654443
No 319
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=30.85 E-value=72 Score=20.26 Aligned_cols=23 Identities=17% Similarity=0.158 Sum_probs=13.7
Q ss_pred HHHHHHHHhhchhhHHHHHhCCc
Q psy3615 48 SFFWLHWSTQIPGGVLARSLGTK 70 (211)
Q Consensus 48 ~~~~~~~i~~~~~g~l~dr~G~r 70 (211)
.....+.+.+...|.+.||..||
T Consensus 83 ~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 83 ITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 34445566777788888888765
No 320
>PRK10692 hypothetical protein; Provisional
Probab=28.77 E-value=1.5e+02 Score=18.63 Aligned_cols=19 Identities=21% Similarity=-0.001 Sum_probs=10.9
Q ss_pred CcchhHHHHHHHHHHHHHh
Q psy3615 69 TKVVFGVSNLAMFLISFAL 87 (211)
Q Consensus 69 ~r~~~~~~~~~~~i~~~~~ 87 (211)
||...++|.++++++.+.+
T Consensus 3 Rk~a~~~GN~lMglGmv~M 21 (92)
T PRK10692 3 RKNASLLGNVLMGLGLVVM 21 (92)
T ss_pred chhhHHHhhHHHHHHHHHH
Confidence 5555666666666555444
No 321
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=28.32 E-value=2.1e+02 Score=19.95 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=18.6
Q ss_pred HHHHHHHHhhchhhHHHHHhCCcc
Q psy3615 48 SFFWLHWSTQIPGGVLARSLGTKV 71 (211)
Q Consensus 48 ~~~~~~~i~~~~~g~l~dr~G~r~ 71 (211)
-|.++..+...+.|++.+|..+++
T Consensus 61 Gyl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 61 GYLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred hHHHHHHHHHHHHHHHHHhccccc
Confidence 466777888888888888887763
No 322
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=27.56 E-value=35 Score=25.83 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=22.7
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh
Q psy3615 99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT 134 (211)
Q Consensus 99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 134 (211)
.+...-.|+|.|....+...-+.+.+| +......+
T Consensus 175 ~ALAMasGvGSgSMMaAa~~aL~~~~P-~~a~~i~A 209 (241)
T PF11299_consen 175 YALAMASGVGSGSMMAAASGALAAAYP-EMADQILA 209 (241)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHCc-chHHHHHH
Confidence 344555678887777777777778786 44444444
No 323
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=27.22 E-value=2.2e+02 Score=19.89 Aligned_cols=42 Identities=10% Similarity=-0.033 Sum_probs=29.4
Q ss_pred cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHH
Q psy3615 34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGV 75 (211)
Q Consensus 34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~ 75 (211)
+.|+.+...-....+.++.-.++.++..+++|+.+.-..+.+
T Consensus 66 eiGi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~ 107 (150)
T COG3086 66 ELGIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVI 107 (150)
T ss_pred EEccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 466666655555566677777788888888898887665543
No 324
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=27.08 E-value=1.9e+02 Score=19.08 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=26.1
Q ss_pred hhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhh
Q psy3615 136 YLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVV 181 (211)
Q Consensus 136 ~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~ 181 (211)
.....++..++..+.+.-.+.-||-+-...-....++..++.....
T Consensus 44 ~~i~~ls~~~GG~~a~~~~~~kG~l~G~~~Gl~y~~il~lis~~~~ 89 (116)
T PF12670_consen 44 VIIYILSVFIGGFYAGRKAGSKGWLHGLLVGLLYFLILLLISFLFG 89 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445556666666777777767776666554444444444444433
No 325
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=26.50 E-value=1.9e+02 Score=18.78 Aligned_cols=32 Identities=6% Similarity=0.013 Sum_probs=16.4
Q ss_pred HHHHHhhchhhHHHH-HhCCcchhHHHHHHHHH
Q psy3615 51 WLHWSTQIPGGVLAR-SLGTKVVFGVSNLAMFL 82 (211)
Q Consensus 51 ~~~~i~~~~~g~l~d-r~G~r~~~~~~~~~~~i 82 (211)
+.-.+...+.|...| +++-++.+.+.+++.++
T Consensus 53 v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv 85 (100)
T TIGR02230 53 AIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGV 85 (100)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 334445555666666 56665544444444333
No 326
>KOG1237|consensus
Probab=26.28 E-value=1.3e+02 Score=26.20 Aligned_cols=62 Identities=15% Similarity=-0.034 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc
Q psy3615 94 DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID 155 (211)
Q Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~ 155 (211)
+.++.+--.++.|++.........-+.-+-+|++-|..+++ +.....+|..++..+......
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~ 519 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQF 519 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777899999999888888888889999999999999 778899999888888755433
No 327
>PF14851 FAM176: FAM176 family
Probab=26.20 E-value=1.5e+02 Score=20.84 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHHHhhhhcchHHHHHHhhhcc
Q psy3615 93 WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWI 124 (211)
Q Consensus 93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 124 (211)
...+--.++.|+.|++.|.........+.-..
T Consensus 16 ~~~PE~~aLYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 16 RDNPERFALYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 45566778888899988887666555444444
No 328
>KOG2601|consensus
Probab=25.60 E-value=4.1e+02 Score=22.37 Aligned_cols=123 Identities=11% Similarity=-0.043 Sum_probs=60.3
Q ss_pred HHHHHHhhchhhHHHHHhCCcchhHHHHHHHHH------HHHHhhhhhc----ccHHHHHHHHHHHHhhhhc--chHHHH
Q psy3615 50 FWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFL------ISFALPAAAY----WDYKAMAGLRIVQGVIGGL--AWPSMH 117 (211)
Q Consensus 50 ~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i------~~~~~~~~~~----~~~~~~~~~~~l~G~~~g~--~~~~~~ 117 (211)
.....+..+..|...|+..|+|++..-+.+-=+ +.+...+.+. .+.+.+..+.++.-...+. ......
T Consensus 73 sgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~ 152 (503)
T KOG2601|consen 73 SGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAG 152 (503)
T ss_pred HhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344556677788889999999988655443211 1222222221 2455554444433322111 111111
Q ss_pred HH--hhhcc----CCCchhhHh---h-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHH
Q psy3615 118 HL--VAHWI----PPTERSQFI---T-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVV 172 (211)
Q Consensus 118 ~~--~~~~~----~~~~r~~~~---~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~ 172 (211)
++ --||. ..|.+.... + +-..-..-..++|.+.|.+....+-|..-...++..++
T Consensus 153 ~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 153 TILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred eEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence 11 11221 223333333 3 32344445678899999988877766644444444443
No 329
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=24.16 E-value=4.2e+02 Score=23.18 Aligned_cols=22 Identities=9% Similarity=-0.266 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHhhchhhHH
Q psy3615 42 QNLVLGSFFWLHWSTQIPGGVL 63 (211)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~g~l 63 (211)
.|+..-++.+|.-.+.-+..-+
T Consensus 452 ~GL~lFla~vG~~aG~~f~~~l 473 (562)
T TIGR03802 452 LGLALFIAVVGLSAGPQAVTAI 473 (562)
T ss_pred HhHHHHHHHHHHhhhHHHHHHH
Confidence 4444444444444444443333
No 330
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=23.68 E-value=4.2e+02 Score=21.84 Aligned_cols=98 Identities=11% Similarity=0.069 Sum_probs=54.7
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615 32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL 111 (211)
Q Consensus 32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 111 (211)
.+..|+|+++...+.....+...++.++-.+-.-++|.|..+..+.....+........ ...+.......++.|+-.-.
T Consensus 20 ~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~-~~~~~~~~ga~~v~Gii~il 98 (406)
T TIGR03173 20 GGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGA-GGGLGAIFGAVIVAGLFVIL 98 (406)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHH
Confidence 34568898888888888888888877765433335677776665544433332222111 12344444445555543322
Q ss_pred chHHHHHHhhhccCCCchhh
Q psy3615 112 AWPSMHHLVAHWIPPTERSQ 131 (211)
Q Consensus 112 ~~~~~~~~~~~~~~~~~r~~ 131 (211)
.. .....+.+.+|+...|.
T Consensus 99 lg-~~~~~l~~~iPp~v~G~ 117 (406)
T TIGR03173 99 LA-PFFSKLVRFFPPVVTGT 117 (406)
T ss_pred HH-HHHHHHHHHCCcHHHHH
Confidence 22 24556778888765553
No 331
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=22.64 E-value=1.8e+02 Score=17.58 Aligned_cols=29 Identities=0% Similarity=-0.215 Sum_probs=19.8
Q ss_pred HHHHHhCCcchhHHHHHHHHHHHHHhhhh
Q psy3615 62 VLARSLGTKVVFGVSNLAMFLISFALPAA 90 (211)
Q Consensus 62 ~l~dr~G~r~~~~~~~~~~~i~~~~~~~~ 90 (211)
.--|+-.|++-+.+.+.+-..+.++..+.
T Consensus 9 ~~~d~~~R~r~Y~i~M~~Ri~~fvlA~~~ 37 (73)
T PF11298_consen 9 LSQDQRRRRRRYLIMMGIRIPCFVLAAVV 37 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888887777777766666554
No 332
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=21.94 E-value=2e+02 Score=17.47 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=3.9
Q ss_pred hchhhHHHHH
Q psy3615 57 QIPGGVLARS 66 (211)
Q Consensus 57 ~~~~g~l~dr 66 (211)
+++.|++.+.
T Consensus 24 sfi~Gy~~q~ 33 (76)
T PF06645_consen 24 SFIVGYITQS 33 (76)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 333
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=21.90 E-value=1.9e+02 Score=18.07 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=10.7
Q ss_pred CcchhHHHHHHHHHHHHHh
Q psy3615 69 TKVVFGVSNLAMFLISFAL 87 (211)
Q Consensus 69 ~r~~~~~~~~~~~i~~~~~ 87 (211)
||...++|..+++++.+.+
T Consensus 3 Rk~a~~~GN~lMglGmv~M 21 (89)
T PF10762_consen 3 RKNAFLLGNVLMGLGMVVM 21 (89)
T ss_pred chhhHHHhhHHHHHhHHHH
Confidence 5555566666665555443
No 334
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=21.04 E-value=3.4e+02 Score=19.77 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=18.2
Q ss_pred HHHhhchhhHHHHHhCCcchhHHHHHHHHHHHH
Q psy3615 53 HWSTQIPGGVLARSLGTKVVFGVSNLAMFLISF 85 (211)
Q Consensus 53 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~ 85 (211)
..++.++.=.+..|.+++-++.+...+.++..+
T Consensus 43 al~~g~vyml~~~KV~K~G~~~i~~~i~gl~~~ 75 (189)
T TIGR02185 43 AFLVGIIFFLMVAKVPKRGVIFIFGILLGLLFF 75 (189)
T ss_pred HHHHhHHHhhhhhhcCCccHHHHHHHHHHHHHH
Confidence 334444444556677777666665555555433
No 335
>PRK14214 camphor resistance protein CrcB; Provisional
Probab=20.22 E-value=2.8e+02 Score=18.48 Aligned_cols=14 Identities=21% Similarity=-0.045 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhhhh
Q psy3615 77 NLAMFLISFALPAA 90 (211)
Q Consensus 77 ~~~~~i~~~~~~~~ 90 (211)
.++..+++++.++.
T Consensus 39 l~vNv~GsfllG~~ 52 (118)
T PRK14214 39 FFINITGSFLLGFL 52 (118)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555566555543
No 336
>PRK11588 hypothetical protein; Provisional
Probab=20.17 E-value=5.7e+02 Score=22.11 Aligned_cols=47 Identities=15% Similarity=-0.133 Sum_probs=23.9
Q ss_pred hhHHHHHhCCcchhH--HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhh
Q psy3615 60 GGVLARSLGTKVVFG--VSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVI 108 (211)
Q Consensus 60 ~g~l~dr~G~r~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~ 108 (211)
.+++.+|++.|..++ +...+++++....++. .+...++...+.....
T Consensus 136 i~~l~~k~~~~~~llIpil~~lFsl~G~~~G~~--Ee~i~f~pi~v~l~~a 184 (506)
T PRK11588 136 ILALIRKTRGNEILFIPVLFILFSLGGAVFGMG--EEAIAFAIIIAPLMVR 184 (506)
T ss_pred HHHHHHHhCCCcEEeHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHH
Confidence 467788887764443 4444555555445444 4333444333333333
Done!