Query psy3615
Match_columns 211
No_of_seqs 245 out of 1364
Neff 10.4
Searched_HMMs 29240
Date Fri Aug 16 21:07:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.9 3.1E-24 1.1E-28 174.2 7.9 165 20-187 43-213 (451)
2 3o7q_A L-fucose-proton symport 99.9 2.1E-23 7.3E-28 168.8 9.7 156 22-179 43-228 (438)
3 2gfp_A EMRD, multidrug resista 99.9 1.7E-23 5.7E-28 166.5 6.2 166 20-187 15-181 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.9 2.6E-21 8.9E-26 158.9 13.2 155 26-182 35-198 (491)
5 4gc0_A D-xylose-proton symport 99.8 8.9E-22 3E-26 161.6 6.6 167 20-187 27-226 (491)
6 2xut_A Proton/peptide symporte 99.8 1.6E-19 5.5E-24 149.4 12.1 153 25-179 33-197 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.6 4.8E-16 1.6E-20 125.9 8.6 154 27-180 275-433 (451)
8 2cfq_A Lactose permease; trans 99.6 8E-15 2.7E-19 118.3 9.5 145 39-185 258-404 (417)
9 2cfq_A Lactose permease; trans 99.5 3E-16 1E-20 126.7 -2.0 150 25-177 28-184 (417)
10 3o7q_A L-fucose-proton symport 99.5 7.7E-14 2.6E-18 112.6 9.2 144 26-173 280-425 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.5 1.4E-13 4.7E-18 112.9 8.5 152 31-183 310-474 (491)
12 4gc0_A D-xylose-proton symport 99.4 9.7E-13 3.3E-17 107.8 12.9 158 29-186 301-468 (491)
13 2gfp_A EMRD, multidrug resista 99.1 1.2E-11 4.2E-16 97.8 0.1 138 26-166 221-362 (375)
14 2xut_A Proton/peptide symporte 99.0 3.6E-10 1.2E-14 93.3 7.2 142 42-183 337-505 (524)
15 2g9p_A Antimicrobial peptide l 66.0 2.8 9.6E-05 18.2 1.1 13 59-71 2-14 (26)
16 2dw3_A Intrinsic membrane prot 40.8 49 0.0017 19.3 3.9 33 157-189 30-62 (77)
17 4dve_A Biotin transporter BIOY 27.6 1.6E+02 0.0055 20.7 5.9 24 47-70 100-123 (198)
18 2nrg_A Intrinsic membrane prot 25.0 1.1E+02 0.0038 18.0 4.3 33 157-189 31-63 (82)
19 1ldf_A Glycerol uptake facilit 22.3 1.6E+02 0.0053 22.0 5.1 18 159-176 232-249 (281)
20 3arc_T Photosystem II reaction 20.9 82 0.0028 14.9 3.6 10 178-187 20-29 (32)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.90 E-value=3.1e-24 Score=174.19 Aligned_cols=165 Identities=14% Similarity=0.166 Sum_probs=148.9
Q ss_pred cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh----hhcccH
Q psy3615 20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA----AAYWDY 95 (211)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~----~~~~~~ 95 (211)
+...+.+..+.+.+++ .+..+.+++.+.+.++..++++++|+++||+|||+++.++.++.+++.+++.+ . +++
T Consensus 43 ~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~ 119 (451)
T 1pw4_A 43 VRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--SSI 119 (451)
T ss_dssp HHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH--SSS
T ss_pred HHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc--ccH
Confidence 3444556667788889 99999999999999999999999999999999999999999999999999988 6 889
Q ss_pred HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHH
Q psy3615 96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVW 173 (211)
Q Consensus 96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~ 173 (211)
+.+++.|++.|++.+...+...+++.|++|+++|+++++ ......+|..++|.+++++.+..| ||+.|++.+++.++.
T Consensus 120 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~ 199 (451)
T 1pw4_A 120 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILV 199 (451)
T ss_dssp SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 889999999999999999888888 999999999888877
Q ss_pred HHHHHhhhcCCCCC
Q psy3615 174 WVVWMIVVYDTPDQ 187 (211)
Q Consensus 174 ~~~~~~~~~~~~~~ 187 (211)
.++.++..||+++.
T Consensus 200 ~~~~~~~~~~~~~~ 213 (451)
T 1pw4_A 200 ALFAFAMMRDTPQS 213 (451)
T ss_dssp HHHHHHHCCCSSTT
T ss_pred HHHHHhhccCCHhh
Confidence 77666667776543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.89 E-value=2.1e-23 Score=168.77 Aligned_cols=156 Identities=13% Similarity=0.101 Sum_probs=139.5
Q ss_pred cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHh---hhhhcccHHHH
Q psy3615 22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFAL---PAAAYWDYKAM 98 (211)
Q Consensus 22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~---~~~~~~~~~~~ 98 (211)
....+..|.+.+++|++..+.+++.+.+.++..+++++.|+++||+|||++++++.++.+++.+++ .+. ++++.+
T Consensus 43 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l 120 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--MNYTLF 120 (438)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc--ccHHHH
Confidence 445556677899999999999999999999999999999999999999999999999999999888 666 889999
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh-cccC------------------
Q psy3615 99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI-DTLG------------------ 158 (211)
Q Consensus 99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~-~~~g------------------ 158 (211)
++.|++.|++.+...+...+++.|++|+++|+++++ ......+|..++|.+++.+. +..+
T Consensus 121 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 200 (438)
T 3o7q_A 121 LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAY 200 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhh
Confidence 999999999999999999999999999999999999 88999999999999999998 5554
Q ss_pred -------chHHHHHHHHHHHHHHHHHHh
Q psy3615 159 -------WEAAFYVTGALGVVWWVVWMI 179 (211)
Q Consensus 159 -------w~~~~~~~~~~~~~~~~~~~~ 179 (211)
||+.|++.+.+.++..++.++
T Consensus 201 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 201 KHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899998877776665554443
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.88 E-value=1.7e-23 Score=166.47 Aligned_cols=166 Identities=13% Similarity=0.098 Sum_probs=148.5
Q ss_pred cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615 20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA 99 (211)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (211)
+.....+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++.++..+.+++.++..+. ++++.++
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~ 92 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLI 92 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHHHH
Confidence 34445555666789999999999999999999999999999999999999999999999999999998887 8899999
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
+.|++.|++.+...+...+++.|++|+++|+++++ ......+|..++|.+++++.+..+||+.|++.+...++..+...
T Consensus 93 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (375)
T 2gfp_A 93 AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMA 172 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 88999999999999999999988999999998888777666555
Q ss_pred hhhcCCCCC
Q psy3615 179 IVVYDTPDQ 187 (211)
Q Consensus 179 ~~~~~~~~~ 187 (211)
+..||++++
T Consensus 173 ~~~~~~~~~ 181 (375)
T 2gfp_A 173 RWMPETRPV 181 (375)
T ss_dssp CSSCCCSTT
T ss_pred HHCcccCCC
Confidence 556765543
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.86 E-value=2.6e-21 Score=158.95 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=137.3
Q ss_pred cccCCCccc-----ccCCchhhHHHHHHHHHHHHHhhchhhHHHHH-hCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615 26 QQDGDSGSL-----FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS-LGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA 99 (211)
Q Consensus 26 ~~~~~i~~~-----~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (211)
...+++.++ +|++..+.+++.+.+.++..+++++.|+++|| +|||+++.++.++.+++.+++.+. ++++.++
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 112 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--FGASALF 112 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--CSTTHHH
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--hhHHHHH
Confidence 344445555 99999999999999999999999999999999 899999999999999999998877 8899999
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhccCCCc--hhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTE--RSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV 176 (211)
Q Consensus 100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~ 176 (211)
+.|++.|++.+...+...+++.|++|+++ |+.+++ .+...++|..++|.+++.+.+..|||+.|++.+...++..++
T Consensus 113 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 113 GSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 777787 779999999999999999999999999999987776666555
Q ss_pred HHhhhc
Q psy3615 177 WMIVVY 182 (211)
Q Consensus 177 ~~~~~~ 182 (211)
.++..+
T Consensus 193 ~~~~~~ 198 (491)
T 4aps_A 193 YYFGGK 198 (491)
T ss_dssp HHHHHH
T ss_pred HHHhCc
Confidence 544433
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.85 E-value=8.9e-22 Score=161.64 Aligned_cols=167 Identities=15% Similarity=0.192 Sum_probs=130.5
Q ss_pred cccccccccCCCccccc--------CCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh-
Q psy3615 20 SRGVLFQQDGDSGSLFH--------WDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA- 90 (211)
Q Consensus 20 ~~~~~~~~~~~i~~~~~--------~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~- 90 (211)
|.++++...+.++++++ .+..+.+++.+.+.+|.+++++++|+++||+|||+++.++.+++.++.+++++.
T Consensus 27 d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~ 106 (491)
T 4gc0_A 27 DTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPE 106 (491)
T ss_dssp HHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455555442 234567899999999999999999999999999999999999999999888731
Q ss_pred ---------------hcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh
Q psy3615 91 ---------------AYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI 154 (211)
Q Consensus 91 ---------------~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~ 154 (211)
..++++.++++|++.|++.|...+....+++|+.|+++|++..+ ......+|..+++.++..+.
T Consensus 107 ~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 107 LGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp TTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 12789999999999999999999999999999999999999999 77888999888888876665
Q ss_pred cc--------cCchHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy3615 155 DT--------LGWEAAFYVTGALGVVWWVVWMIVVYDTPDQ 187 (211)
Q Consensus 155 ~~--------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (211)
.. .+||..+.......++.. +..+..||+|+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peSp~~ 226 (491)
T 4gc0_A 187 RSGDASWLNTDGWRYMFASECIPALLFL-MLLYTVPESPRW 226 (491)
T ss_dssp TTSCTTTTTTTHHHHHHHTTHHHHHHHH-HHGGGSCCCHHH
T ss_pred cccccccccchhhHHHhhhhhhhhhhhh-hhhhcCCCChHH
Confidence 43 236665655554444443 334557888763
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.81 E-value=1.6e-19 Score=149.44 Aligned_cols=153 Identities=15% Similarity=0.075 Sum_probs=134.7
Q ss_pred ccccCCCccccc------CCchhhHHHHHHHHHHHHHhhchhhHHHHHh-CCcchhHHHHHHHHHHHHHhhhhhcc-cHH
Q psy3615 25 FQQDGDSGSLFH------WDSNVQNLVLGSFFWLHWSTQIPGGVLARSL-GTKVVFGVSNLAMFLISFALPAAAYW-DYK 96 (211)
Q Consensus 25 ~~~~~~i~~~~~------~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~i~~~~~~~~~~~-~~~ 96 (211)
...++++.+++| ++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.+++.+. + +++
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~ 110 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--EHSVQ 110 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--SSCHH
T ss_pred HHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--cccHH
Confidence 444556677888 9999999999999999999999999999999 99999999999999999988877 7 899
Q ss_pred HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh----hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHH
Q psy3615 97 AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT----SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVV 172 (211)
Q Consensus 97 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~ 172 (211)
.+++.|++.|++.+...+...+++.|++|+++|+++.+ .+...++|..++|.+++.+.+..||++.|++.+++.++
T Consensus 111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~ 190 (524)
T 2xut_A 111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFV 190 (524)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976544 44788999999999999999989999999998877666
Q ss_pred HHHHHHh
Q psy3615 173 WWVVWMI 179 (211)
Q Consensus 173 ~~~~~~~ 179 (211)
..++.++
T Consensus 191 ~~~~~~~ 197 (524)
T 2xut_A 191 ATVFFWL 197 (524)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 5554433
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.64 E-value=4.8e-16 Score=125.93 Aligned_cols=154 Identities=12% Similarity=0.096 Sum_probs=130.7
Q ss_pred ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh--CCcchhHHHHHHHH-HHHHHhhhhhcccHHHHHHHHH
Q psy3615 27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL--GTKVVFGVSNLAMF-LISFALPAAAYWDYKAMAGLRI 103 (211)
Q Consensus 27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--G~r~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~ 103 (211)
.+..+++.+|++..+.+++.+...++..++.++.|++.||+ |+|+.+.++..+.. ++.++..+....+.+.+.+..+
T Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (451)
T 1pw4_A 275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 354 (451)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence 44455666899999999999999999999999999999999 99999888877766 5655555542236777788888
Q ss_pred HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchh-hhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615 104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSF-GVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIV 180 (211)
Q Consensus 104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~-g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~ 180 (211)
+.|++.+...+....++.|.+|+++|+++++ .+....+ |..++|.+.+.+.+..||+..|++.+++.++..++.++.
T Consensus 355 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 355 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888999999999999999999 7788888 999999999999999999999999888877766655543
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.57 E-value=8e-15 Score=118.31 Aligned_cols=145 Identities=10% Similarity=0.068 Sum_probs=118.6
Q ss_pred chhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHH
Q psy3615 39 SNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHH 118 (211)
Q Consensus 39 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~ 118 (211)
....++..++..++..++.++.|++.||+|||+++..+..+.++..++..+. ++.+.+++..++.+++.+...+....
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--CSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777788888899999999999999999998888888876666555 66777777777788877767777788
Q ss_pred HhhhccCCCchhhHhh-h-hhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615 119 LVAHWIPPTERSQFIT-S-YLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTP 185 (211)
Q Consensus 119 ~~~~~~~~~~r~~~~~-~-~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (211)
++.|.+|++.|+++.+ . +....+|..++|.+.+++.+..|++..|.+.+++.++..++.++..+|++
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999988 5 47788999999999999999888888999888887777766555555543
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.53 E-value=3e-16 Score=126.66 Aligned_cols=150 Identities=13% Similarity=0.075 Sum_probs=102.6
Q ss_pred ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHh---hhhhcccH-HHHHH
Q psy3615 25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFAL---PAAAYWDY-KAMAG 100 (211)
Q Consensus 25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~---~~~~~~~~-~~~~~ 100 (211)
+..+.++++++|+|+.+.+++.+.+.+++.++++++|+++||+|||++++++..+.++..... .+. +.. ..+..
T Consensus 28 ~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 105 (417)
T 2cfq_A 28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG--PLLQYNILV 105 (417)
T ss_dssp TTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH--HHHHTTCCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 344555677899999999999999999999999999999999999999998887765532111 111 111 11233
Q ss_pred HHHHHHhhhhcchHHHHHHhhhccCC--CchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615 101 LRIVQGVIGGLAWPSMHHLVAHWIPP--TERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW 177 (211)
Q Consensus 101 ~~~l~G~~~g~~~~~~~~~~~~~~~~--~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~ 177 (211)
.+++.|++.+..++.......++.++ ++++...+ ......+|..++|.+++++.+ .+|++.|++.++..++..+..
T Consensus 106 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~ 184 (417)
T 2cfq_A 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLL 184 (417)
T ss_dssp HHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHH
Confidence 45555554444433333334444332 34566667 667889999999999999887 589999987766654443333
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.49 E-value=7.7e-14 Score=112.60 Aligned_cols=144 Identities=11% Similarity=0.034 Sum_probs=118.4
Q ss_pred cccCC-CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Q psy3615 26 QQDGD-SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIV 104 (211)
Q Consensus 26 ~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l 104 (211)
..+.+ +++.+|.+..+.++..+...++..++.++.|++.||+|||+++.++.++.+++.++..+. ++.+.+ ...++
T Consensus 280 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~ 356 (438)
T 3o7q_A 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGHVGL-IALTL 356 (438)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--CHHHHH-HHHHH
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc--CCcHHH-HHHHH
Confidence 34455 566679999999999999999999999999999999999999999999888888777666 555544 34488
Q ss_pred HHhhhhcchHHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHH
Q psy3615 105 QGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVW 173 (211)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~ 173 (211)
.|++.+..++...++..|.+|++ ++.+.+......+|..++|.+.+++.+..| ++..|++.+...++.
T Consensus 357 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 357 CSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 88999999999999999999866 888888333566999999999999999988 999888765544433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.46 E-value=1.4e-13 Score=112.90 Aligned_cols=152 Identities=14% Similarity=-0.051 Sum_probs=118.5
Q ss_pred CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhH-----HHHHHHHHHHHHhhhhh-------cccHHHH
Q psy3615 31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFG-----VSNLAMFLISFALPAAA-------YWDYKAM 98 (211)
Q Consensus 31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~-----~~~~~~~i~~~~~~~~~-------~~~~~~~ 98 (211)
..+.++.+..+.+++.+...++..++.++.+++.||+|||+... .+.++.+++.++..+.. ..+.+.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4aps_A 310 AAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWL 389 (491)
T ss_dssp HHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHH
T ss_pred HHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Confidence 34456666667788888899999999999999999999987765 77777777766665531 1256777
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615 99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW 177 (211)
Q Consensus 99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~ 177 (211)
++..++.|++.+...+....++.|.+|+++|+++++ .+....+|..+++.+.+.+.+ .++.+.|...+.+.++..++.
T Consensus 390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHH
Confidence 788899999999989999999999999999999999 779999999999999988776 467778888887777766666
Q ss_pred HhhhcC
Q psy3615 178 MIVVYD 183 (211)
Q Consensus 178 ~~~~~~ 183 (211)
++..++
T Consensus 469 ~~~~~~ 474 (491)
T 4aps_A 469 VFLSKR 474 (491)
T ss_dssp HHC---
T ss_pred HHHHHH
Confidence 554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.45 E-value=9.7e-13 Score=107.77 Aligned_cols=158 Identities=11% Similarity=0.012 Sum_probs=114.8
Q ss_pred CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc--ccHHHHHHHHHHHH
Q psy3615 29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY--WDYKAMAGLRIVQG 106 (211)
Q Consensus 29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~l~G 106 (211)
+.+.+..+.+............+...++.++.+++.||+|||+.++.+....+++.+....... ...+..++..++..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 4455666777777777777888889999999999999999999999988888877665543321 11222222222222
Q ss_pred hh-hhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc------ccCchHHHHHHHHHHHHHHHHHH
Q psy3615 107 VI-GGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID------TLGWEAAFYVTGALGVVWWVVWM 178 (211)
Q Consensus 107 ~~-~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~------~~gw~~~~~~~~~~~~~~~~~~~ 178 (211)
.+ .....+....+.+|.+|.+.|+++++ ......++..+++.+...+.+ ..++...|++.++++++..++.+
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 22 22245677889999999999999999 778888888888777665543 34567788888889888888888
Q ss_pred hhhcCCCC
Q psy3615 179 IVVYDTPD 186 (211)
Q Consensus 179 ~~~~~~~~ 186 (211)
++.||++.
T Consensus 461 ~~~PETkg 468 (491)
T 4gc0_A 461 KFVPETKG 468 (491)
T ss_dssp HHCCCCTT
T ss_pred heecCCCC
Confidence 88998754
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.08 E-value=1.2e-11 Score=97.85 Aligned_cols=138 Identities=9% Similarity=-0.090 Sum_probs=106.5
Q ss_pred cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHH-HHHHHH--HhhhhhcccHHHHHHHH
Q psy3615 26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLA-MFLISF--ALPAAAYWDYKAMAGLR 102 (211)
Q Consensus 26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~-~~i~~~--~~~~~~~~~~~~~~~~~ 102 (211)
..+..+++++|.++.+.+++.+...++..++.++.+++.||++++ +..+... ...+.. .......++.+.+++..
T Consensus 221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (375)
T 2gfp_A 221 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPA 298 (375)
T ss_dssp HCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHH
Confidence 344555666899999999999999999999999999999999882 3333333 222222 11111123567777888
Q ss_pred HHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHH
Q psy3615 103 IVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVT 166 (211)
Q Consensus 103 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~ 166 (211)
++.|++.+...+....++.|..| ++|+++.+ .+....+|..++|.+.+.+.+..+++..++..
T Consensus 299 ~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 299 ALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 89999999999999999999998 89999999 77999999999999999998877777666654
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.03 E-value=3.6e-10 Score=93.29 Aligned_cols=142 Identities=8% Similarity=-0.068 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHHhhchhhHHH----HHhCCc----chhHHHHHHHHHHHHHhhhhh-------cccHHHHHHHHHHHH
Q psy3615 42 QNLVLGSFFWLHWSTQIPGGVLA----RSLGTK----VVFGVSNLAMFLISFALPAAA-------YWDYKAMAGLRIVQG 106 (211)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~g~l~----dr~G~r----~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~l~G 106 (211)
.+.+.....++..+..++.+++. ||.|+| +.+.++.++.+++.++..+.. ..+.+.+++..++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 45555555566666777777664 555432 456677777777776665531 135677778889999
Q ss_pred hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc--Cc---------hHHHHHHHHHHHHHH
Q psy3615 107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL--GW---------EAAFYVTGALGVVWW 174 (211)
Q Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~--gw---------~~~~~~~~~~~~~~~ 174 (211)
++.+...+....++.|..|+++|+++++ .+....+|..++|.+.+.+.+.. +| +..|++.+.+.++..
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAA 496 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 88999999999999999887742 23 233666666666655
Q ss_pred HHHHhhhcC
Q psy3615 175 VVWMIVVYD 183 (211)
Q Consensus 175 ~~~~~~~~~ 183 (211)
++.++..++
T Consensus 497 ~~~~~~~~~ 505 (524)
T 2xut_A 497 IVFALYARS 505 (524)
T ss_dssp HHHC-----
T ss_pred HHHHHHHHH
Confidence 555444443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=66.04 E-value=2.8 Score=18.19 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=10.7
Q ss_pred hhhHHHHHhCCcc
Q psy3615 59 PGGVLARSLGTKV 71 (211)
Q Consensus 59 ~~g~l~dr~G~r~ 71 (211)
+.|.+..+||||.
T Consensus 2 lfgklikkfgrka 14 (26)
T 2g9p_A 2 LFGKLIKKFGRKA 14 (26)
T ss_dssp HHHHHHHHHTSHH
T ss_pred cHHHHHHHHhHHH
Confidence 4688999999975
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=40.77 E-value=49 Score=19.30 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=17.2
Q ss_pred cCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q psy3615 157 LGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHP 189 (211)
Q Consensus 157 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (211)
.||...+.+...+.++..-..-..+||..+..+
T Consensus 30 Ag~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP 62 (77)
T 2dw3_A 30 AGWAGGVFFGTLLLIGFFRVVGRMLPIQENQAP 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTCSSCS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCchhcccCC
Confidence 345555555544444444444456777655433
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=27.58 E-value=1.6e+02 Score=20.69 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhchhhHHHHHhCCc
Q psy3615 47 GSFFWLHWSTQIPGGVLARSLGTK 70 (211)
Q Consensus 47 ~~~~~~~~i~~~~~g~l~dr~G~r 70 (211)
.-|.++..+...+.|++.||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 346667777777888888876543
No 18
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=24.97 E-value=1.1e+02 Score=17.98 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=17.8
Q ss_pred cCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q psy3615 157 LGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHP 189 (211)
Q Consensus 157 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (211)
.||...+.+...+.++..-..-..+||..+..+
T Consensus 31 AG~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~aP 63 (82)
T 2nrg_A 31 AGWAGGVFFGTLLLIGFFRVVGRMLPIQENQAP 63 (82)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHSSTTTTTCCS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCchhcccCC
Confidence 356666665555544444444456777655433
No 19
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=22.31 E-value=1.6e+02 Score=21.97 Aligned_cols=18 Identities=6% Similarity=-0.051 Sum_probs=11.0
Q ss_pred chHHHHHHHHHHHHHHHH
Q psy3615 159 WEAAFYVTGALGVVWWVV 176 (211)
Q Consensus 159 w~~~~~~~~~~~~~~~~~ 176 (211)
|.|.+++.-.+..+...+
T Consensus 232 ~~WVy~vgPi~Ga~la~~ 249 (281)
T 1ldf_A 232 YFLVPLFGPIVGAIVGAF 249 (281)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred eeeHHhHHHHHHHHHHHH
Confidence 567777766665554433
No 20
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=20.92 E-value=82 Score=14.94 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=5.6
Q ss_pred HhhhcCCCCC
Q psy3615 178 MIVVYDTPDQ 187 (211)
Q Consensus 178 ~~~~~~~~~~ 187 (211)
..+.+|+|+-
T Consensus 20 AI~FRePPri 29 (32)
T 3arc_T 20 AIFFREPPRI 29 (32)
T ss_dssp HHHTSCCCCC
T ss_pred hhhhcCCCCC
Confidence 3445676654
Done!