RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3615
(211 letters)
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 128 bits (324), Expect = 4e-35
Identities = 43/185 (23%), Positives = 67/185 (36%), Gaps = 6/185 (3%)
Query: 33 SLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY 92
++ + + + G H+ QI + L K VF S +S +
Sbjct: 65 NIKNPNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIP 124
Query: 93 WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSF-GVALSYPLCG 151
W L + VI GLA S+ I + + LG S G L +
Sbjct: 125 WAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFL 184
Query: 152 VVID-----TLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNT 206
+ GW FYV G +G W ++W + D P HP +S EK+YI +L
Sbjct: 185 PISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQ 244
Query: 207 VSAKK 211
+ +
Sbjct: 245 KGSTR 249
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 80.8 bits (200), Expect = 6e-18
Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 14/187 (7%)
Query: 16 ISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGV 75
+LS + Q+D + V +F W + Q PGG L G + V
Sbjct: 11 ANLSFAAPMLQED------LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAV 64
Query: 76 SNLAMFLISFALPAAAYWD-YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT 134
+ + A+ Y ++ LR++ G +P + +VA W P +ER+
Sbjct: 65 ---FIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERAT-AV 120
Query: 135 SY--LGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVS 192
S G + PL G ++ W+ AF + G LG++W V+W+ + D P Q +
Sbjct: 121 SIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPP-QKAKWL 179
Query: 193 AEEKEYI 199
EE++YI
Sbjct: 180 TEEEKYI 186
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 78.6 bits (194), Expect = 2e-17
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 3/164 (1%)
Query: 35 FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
L+L +F + Q G L+ G + V + L +F + L A
Sbjct: 27 LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIG-LLLFALGLLLLLFASSL 85
Query: 95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSY-LGSSFGVALSYPLCGVV 153
+ + LR++QG+ GG +P+ L+A W PP ER + + G G AL L G++
Sbjct: 86 W-LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLL 144
Query: 154 IDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKE 197
GW AAF + L ++ V+ +++ P + R E+
Sbjct: 145 ASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEA 188
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 72.3 bits (178), Expect = 5e-15
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
Query: 35 FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
++ L++ +F + + G L+ G + V + L L S L A
Sbjct: 29 LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA--SS 86
Query: 95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV 153
+ R + G+ GG +P+ L+A W PP ER + + G G L L G++
Sbjct: 87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL 146
Query: 154 IDTLGWEAAFYVTGALGVVWWVVWMIVV 181
++LGW F + LG++ ++ + ++
Sbjct: 147 AESLGWRWLFLILAILGLLLALLLLFLL 174
Score = 40.0 bits (94), Expect = 5e-04
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 2/151 (1%)
Query: 32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA 91
+ + L+L F + GG+L+ LG + + + L + + L A A
Sbjct: 203 QEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA 262
Query: 92 YWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFI-TSYLGSSFGVALSYPLC 150
+ L ++ G G A+P++ L + PP R S G AL L
Sbjct: 263 PSLALLLVAL-LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321
Query: 151 GVVIDTLGWEAAFYVTGALGVVWWVVWMIVV 181
G+++DT G+ F + AL ++ ++ +++
Sbjct: 322 GLLLDTGGYGGVFLILAALALLAALLLLLLP 352
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 58.9 bits (143), Expect = 2e-10
Identities = 34/174 (19%), Positives = 70/174 (40%), Gaps = 13/174 (7%)
Query: 44 LVLGSFFWLHWSTQIPGGVLARSLGTKVVFGV----SNLAMFLISFALPAAAYWDYKAMA 99
L+L SF + ++ G ++ +V + + F+ + W MA
Sbjct: 34 LLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS---TSLW---VMA 87
Query: 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSY-LGSSFGVALSYPLCGVVIDTL- 157
L + G+ G+ WP V W +ER +++ + + G L PL I L
Sbjct: 88 ALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY 147
Query: 158 GWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVSAKK 211
W F V G + ++ ++ +++ D+P Q + E+ ++ G+ ++
Sbjct: 148 SWHWVFIVPGIIAIIVSLICFLLLRDSP-QSCGLPPAEEMPNEEPDGDAEKKEE 200
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 46.9 bits (112), Expect = 5e-07
Identities = 31/116 (26%), Positives = 40/116 (34%), Gaps = 3/116 (2%)
Query: 58 IPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMH 117
G+L G K V V L A + + R +QG A +
Sbjct: 16 PLSGLLTDRFGRKPVLLVGLFIFVL--STAMFALSSNITVLIIARFLQGFGAAFALVAGA 73
Query: 118 HLVAHWIPPTERSQ-FITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVV 172
L+A PP ER G + G L PL GV+ LGW A F L +
Sbjct: 74 ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA 129
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 46.9 bits (112), Expect = 2e-06
Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 15/133 (11%)
Query: 61 GVLARSLGTKVVFG----VSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSM 116
GVL+ + +S + L F+ A L ++ G G+ WP
Sbjct: 85 GVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFL------FAVLWVLNGWFQGMGWPPC 138
Query: 117 HHLVAHWIPPTERSQFITSYLGSS--FGVALSYPLC--GVVIDTLGWEAAFYVTGALGVV 172
+ HW ER S +S G AL+ + GW AAFY G + ++
Sbjct: 139 ARTITHWFSRKERG-TWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAII 197
Query: 173 WWVVWMIVVYDTP 185
++ + ++ D P
Sbjct: 198 VALILLFLLRDRP 210
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 46.6 bits (111), Expect = 3e-06
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 5/136 (3%)
Query: 56 TQIP-GGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWP 114
IP G LA+ GT+ +F +S A L S A + + M R++QG GG P
Sbjct: 52 ISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP--NLELMIIFRVIQGFGGGPLIP 109
Query: 115 SMHHLVAHWIPPTERSQFITSY-LGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGV-V 172
+ + PP +R + + + L AL L G +I+ W F + +G+ V
Sbjct: 110 LSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIV 169
Query: 173 WWVVWMIVVYDTPDQH 188
V + I+ D P
Sbjct: 170 VVVAFFILPRDKPAAS 185
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 41.8 bits (99), Expect = 1e-04
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 67 LGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPP 126
LG +F VSNL +A + + R + G+ G+ W L A +PP
Sbjct: 82 LGLLALFIVSNLL---------SALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPP 132
Query: 127 TERSQFITS-YLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVV 181
+R + + + G + L PL + GW A F L ++ ++ ++
Sbjct: 133 GKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLL 188
Score = 33.7 bits (78), Expect = 0.053
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 10/123 (8%)
Query: 60 GGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHL 119
GG LA G + + L + L AL A+A L + G P++ L
Sbjct: 267 GGRLAD-RGPRRALIAALLLLALALLALTFTGASPALALALL----FLWGFAFSPALQGL 321
Query: 120 VAHWIPPTERSQFITSYLGSS---FGVALSYPLCGVVIDTLGWEAAFYVTGALGVV--WW 174
+ + L + G+AL L G+V+D LG+ A +V AL ++
Sbjct: 322 QTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLL 381
Query: 175 VVW 177
+
Sbjct: 382 ALL 384
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 37.7 bits (88), Expect = 0.003
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 60 GGVLARSLGTKVVFGVSNLAMFLIS-FALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHH 118
G LA +G + V S + L S F L A + + LR + G+ G P+++
Sbjct: 72 FGPLADRIGRRRVLLWS---ILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNA 128
Query: 119 LVAHWIPPTERSQFITSY-LGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW 177
LV+ + P R + G G A+ L G +I GW + FYV G ++ ++
Sbjct: 129 LVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLL 188
Query: 178 MIVV 181
M +
Sbjct: 189 MRFL 192
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 36.1 bits (84), Expect = 0.009
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 60 GGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHL 119
GG LA +G K + VS +A+F + F+L A WD+ ++ R++ GV G A P++ L
Sbjct: 70 GGRLADRIGRKRILIVS-VALFGL-FSLATAQAWDFPSLLVARLLTGVGLGGALPNLIAL 127
Query: 120 VAHWIPPTERSQFITS-YLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGA 168
+ + P R ++ Y G FG AL+ + + W FYV G
Sbjct: 128 TSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGV 177
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 32.0 bits (71), Expect = 0.23
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 5/141 (3%)
Query: 44 LVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRI 103
L+L +FF + + G L G + V + L L + L A + LR+
Sbjct: 43 LLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRL 102
Query: 104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGS---SFGVALSYPLCGVVID--TLG 158
+QG+ GG P L++ W P + + G+AL L G+++ G
Sbjct: 103 LQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG 162
Query: 159 WEAAFYVTGALGVVWWVVWMI 179
W AAF + LG++ ++ ++
Sbjct: 163 WRAAFLLAALLGLLLLILVLL 183
>gnl|CDD|220620 pfam10183, ESSS, ESSS subunit of NADH:ubiquinone oxidoreductase
(complex I). This subunit is part of the mitochondrial
NADH:ubiquinone oxidoreductase (complex I). It carries
mitochondrial import sequences.
Length = 101
Score = 30.1 bits (68), Expect = 0.24
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 155 DTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQ 187
WE FY L +V V + DT Q
Sbjct: 54 KWEDWELPFYFGFFLTLVILGVGLNYKPDTTIQ 86
>gnl|CDD|219968 pfam08681, DUF1778, Protein of unknown function (DUF1778). This is
a family of uncharacterized proteins. The structure of
one of the hypothetical proteins in this family has been
solved and it forms a helix structure which may form
interactions with DNA.
Length = 80
Score = 27.9 bits (63), Expect = 0.96
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 190 RVSAEEKEYIQQA---LGNTVSA 209
RVS E KE +++A G T++
Sbjct: 5 RVSPEAKELLERAAALSGKTLTD 27
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 28.4 bits (64), Expect = 2.8
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 46 LGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQ 105
LGSF + G L+ G K V +S L + A +Y R++
Sbjct: 142 LGSFVF---------GYLSDRFGRKKVLLLSTLVTAVSGVL--TAFSPNYTVFLVFRLLV 190
Query: 106 GVIGGLAWPSMHHLVAHWIPPTERSQFITSY 136
G+ G W L ++P +R+ T
Sbjct: 191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLI 221
>gnl|CDD|131542 TIGR02489, flgE_epsilon, flagellar hook protein FlgE, epsilon
proteobacterial. Members of this family are flagellar
hook proteins, designated FlgE, as found in the epsilon
subdivision of the Proteobacteria (Helicobacter,
Wolinella, and Campylobacter). These proteins differ
significantly in architecture from proteins designated
FlgE in other lineages; the N-terminal and C-terminal
domains are homologous, but members of this family only
contain a large central domain that is surface-exposed
and variable between strains.
Length = 719
Score = 28.4 bits (63), Expect = 2.9
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 19 SSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWST 56
S G + Q+ D+G LF+ NL G W+ ++
Sbjct: 221 DSSGEVTQKGEDAGVLFNASGTALNLREGQGIWVSYAD 258
>gnl|CDD|226956 COG4590, COG4590, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 733
Score = 28.3 bits (63), Expect = 3.4
Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 27/130 (20%)
Query: 71 VVFGVSNLAMFLISFALP----AAAYWDYKAMAGLR-IVQGVI---GGLAWPSMHHLVAH 122
+ FG A + + FA+P A Y Y +R +V+ I L + L
Sbjct: 431 IAFGTLKAAAYAMLFAMPLAVAGAIYTAYFMTPSMRRVVKPTIELMEALPTVIIGFLAGL 490
Query: 123 WIPPTERSQFITSYLGSSFGVALSYP----LCGVVIDTL----------GWEAAFYVTGA 168
W+ P F+ S+L + L P L G + L GW A +
Sbjct: 491 WLAP-----FVESHLPGVLALMLLLPLSILLLGFIWSRLPKAWLRRLPAGWHALILIPVL 545
Query: 169 LGVVWWVVWM 178
LG+ +W+
Sbjct: 546 LGIGALALWL 555
>gnl|CDD|239579 cd03499, SQR_TypeC_SdhC, Succinate:quinone oxidoreductase (SQR)
Type C subfamily, Succinate dehydrogenase C (SdhC)
subunit; composed of bacterial SdhC and eukaryotic large
cytochrome b binding (CybL) proteins. SQR catalyzes the
oxidation of succinate to fumarate coupled to the
reduction of quinone to quinol. Members of this family
reduce high potential quinones such as ubiquinone. SQR
is also called succinate dehydrogenase or Complex II,
and is part of the citric acid cycle and the aerobic
respiratory chain. SQR is composed of a flavoprotein
catalytic subunit, an iron-sulfur protein and one or two
hydrophobic transmembrane subunits. Proteins in this
subfamily are classified as Type C SQRs because they
contain two transmembrane subunits and one heme group.
The heme and quinone binding sites reside in the
transmembrane subunits. The SdhC or CybL protein is one
of the two transmembrane subunits of bacterial and
eukaryotic SQRs. The two-electron oxidation of succinate
in the flavoprotein active site is coupled to the
two-electron reduction of quinone in the membrane anchor
subunits via electron transport through FAD and three
iron-sulfur centers. The reversible reduction of quinone
is an essential feature of respiration, allowing
transfer of electrons between respiratory complexes.
Length = 117
Score = 27.1 bits (61), Expect = 3.8
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 72 VFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVA 121
G+ L +L++ ++ A+ G + + V+ GL W +HL+
Sbjct: 30 FLGLPLLLWWLLASLSSPESFESVSALLGSWLGKLVLFGLTWALFYHLLN 79
>gnl|CDD|183266 PRK11663, PRK11663, regulatory protein UhpC; Provisional.
Length = 434
Score = 27.8 bits (62), Expect = 4.8
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 97 AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTER----SQFITSYLGSSFGVALSYPLCGV 152
A A L ++ G WP L+ W TER + + T++ + G AL + G
Sbjct: 113 AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAH---NVGGALIPLVVGA 169
Query: 153 VIDTLGWEAAFYVTGALGVV 172
+ GW + G + +V
Sbjct: 170 IALHYGWRYGMMIAGIIAIV 189
>gnl|CDD|238892 cd01911, proteasome_alpha, proteasome alpha subunit. The 20S
proteasome, multisubunit proteolytic complex, is the
central enzyme of nonlysosomal protein degradation in
both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
different alpha and 10 different beta proteasome subunit
genes while archaea have one of each.
Length = 209
Score = 27.4 bits (62), Expect = 5.1
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 23/70 (32%)
Query: 50 FWLHWSTQIPGGVLARSLGTKVV----------FGVSNLAMFLISF----------ALPA 89
+ + IP VL + + FGVS + + + P+
Sbjct: 92 YRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVS---LLIAGYDEEGGPQLYQTDPS 148
Query: 90 AAYWDYKAMA 99
Y+ YKA A
Sbjct: 149 GTYFGYKATA 158
>gnl|CDD|215323 PLN02598, PLN02598, omega-6 fatty acid desaturase.
Length = 421
Score = 27.5 bits (61), Expect = 5.7
Identities = 29/118 (24%), Positives = 38/118 (32%), Gaps = 34/118 (28%)
Query: 110 GLAWPSMHHLVAHWI---------PPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWE 160
G W + HW+ P E + S L + F LG
Sbjct: 220 GPLWWWAS--IGHWLFWHFDLNKFRPQEVPRVKIS-LAAVFAFMA-----------LGLP 265
Query: 161 AAFYVTGALGVV-WWVV-------WM---IVVYDTPDQHPRVSAEEKEYIQQALGNTV 207
Y TG +G V WW++ WM +V+ T P A E Q L TV
Sbjct: 266 PLLYTTGPVGFVKWWLMPWLGYHFWMSTFTMVHHTAPHIPFKQAREWNAAQAQLNGTV 323
>gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 374
Score = 27.6 bits (62), Expect = 5.8
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 181 VYDTPDQHPRVSAEEKEYIQQALGN 205
+ P P + EE +Q+ L +
Sbjct: 3 INKIPFSRPSIGEEELAAVQEVLKS 27
>gnl|CDD|236889 PRK11273, glpT, sn-glycerol-3-phosphate transporter; Provisional.
Length = 452
Score = 27.4 bits (61), Expect = 6.5
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 14/118 (11%)
Query: 75 VSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT 134
++ M + F A + M L + G G+ WP + HW ER ++
Sbjct: 102 LAAAVMLFMGFVPWATS--SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVS 159
Query: 135 SY-LGSSFGVALSYPLCGVVIDTLG------WEAAFYVTGALGVVWWVVWMIVVYDTP 185
+ + G L L LG W AA Y+ ++ + ++ DTP
Sbjct: 160 VWNCAHNVGGGLPPLLF-----LLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP 212
>gnl|CDD|222200 pfam13528, Glyco_trans_1_3, Glycosyl transferase family 1.
Length = 317
Score = 27.2 bits (61), Expect = 6.7
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 11/73 (15%)
Query: 64 ARSLGTKVVFGVSNLAMFL-ISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAH 122
A+ G V G+ + FL ++ +P +D + + + P+ L H
Sbjct: 110 AKRQGVPCV-GIDHQYAFLACNYDIPKGLKFD-------ALFEKYVLRAFAPAQRRLGLH 161
Query: 123 W--IPPTERSQFI 133
+ Q I
Sbjct: 162 FYPPLKPHFEQPI 174
>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease. This protein is
a part of the Major Facilitator Superfamily (Pfam family
pfam07690). Member of this family are found in a number
of proteobacterial genomes, but only in the context of
having genes for 4-hydroxyphenylacetate (4-HPA)
degradation. The protein is characterized by Prieto, et
al. (PMID:9315705) as 4-hydroxyphenylacetate permease in
E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are
shown to competitively inhibit 4-HPA transport and
therefore also interact specificially.
Length = 412
Score = 26.9 bits (59), Expect = 9.4
Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQ-----FITSYLGSSFGVALSYPLCGV--V 153
LRI+ G+ P + + W P R++ I + + G+ LS + + +
Sbjct: 102 LRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161
Query: 154 IDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGN 205
+ GW+ F + G V+ V+ + D+PD+ + E+K+ +++ + N
Sbjct: 162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDN 213
>gnl|CDD|226133 COG3605, PtsP, Signal transduction protein containing GAF and PtsI
domains [Signal transduction mechanisms].
Length = 756
Score = 27.0 bits (60), Expect = 9.5
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 168 ALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGN 205
A+G V VV + + E+E + AL +
Sbjct: 188 AIGEVVLHEPRPVVENVLNASTLDPDAERERLTGALES 225
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.439
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,032,893
Number of extensions: 1057087
Number of successful extensions: 1204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1174
Number of HSP's successfully gapped: 89
Length of query: 211
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 118
Effective length of database: 6,812,680
Effective search space: 803896240
Effective search space used: 803896240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)