RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3615
(211 letters)
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 98.6 bits (246), Expect = 2e-24
Identities = 27/181 (14%), Positives = 57/181 (31%), Gaps = 4/181 (2%)
Query: 35 FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNL--AMFLISFALPAAAY 92
+ L + ++ G ++ +V + A ++ A
Sbjct: 57 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 116
Query: 93 WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYL-GSSFGVALSYPLCG 151
M L + G G+ WP + HW ER ++ + + G + L
Sbjct: 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176
Query: 152 VVIDTL-GWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVSAK 210
+ + W AA Y+ ++ + ++ DTP EE + N + +
Sbjct: 177 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ 236
Query: 211 K 211
+
Sbjct: 237 E 237
Score = 34.3 bits (79), Expect = 0.023
Identities = 11/58 (18%), Positives = 25/58 (43%)
Query: 138 GSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEE 195
G G + + G +D GW+ F V ++ ++ ++V+ +H ++ E
Sbjct: 391 GYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQEL 448
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide
transport, major facilitator SUPE transporter, MFS;
3.30A {Streptococcus thermophilus}
Length = 491
Score = 39.7 bits (93), Expect = 3e-04
Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 12/161 (7%)
Query: 23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLA-RSLGTK--VVFGVSNLA 79
+ + S H ++ + + + + GG +A R +G + V +G +
Sbjct: 37 LYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM 96
Query: 80 MFLISFALPAAAYWDYKAMAGLRIVQGVIG-GLAWPSMHHLVAHWIPPTER---SQFITS 135
+ I ALP A + ++ + +IG G P++ LV +R + F
Sbjct: 97 LGHIVLALPFGASALFGSIILI-----IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIF 151
Query: 136 YLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV 176
G + G ++ + G + G+ AF + + +V
Sbjct: 152 VFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 39.1 bits (91), Expect = 6e-04
Identities = 14/138 (10%), Positives = 40/138 (28%), Gaps = 5/138 (3%)
Query: 61 GVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLV 120
++ +G K ++ M + A + L+ + +
Sbjct: 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCFKYI 337
Query: 121 AHWIPPTERS--QFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV-W 177
+ + + L G + +++G++ A+ V G + + + ++
Sbjct: 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397
Query: 178 MIVVYDTPDQHPRVSAEE 195
+ P R E
Sbjct: 398 FTLSGPGPLSLLRRQVNE 415
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.16
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 27/74 (36%)
Query: 120 VAHWI------PPTERSQFITSYLGSSFGVALSYPLCG--------VVIDTLGW---EAA 162
+ W+ P + YL S + +S PL G V LG+ E
Sbjct: 215 ILEWLENPSNTPDKD-------YLLS---IPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 163 FYVTGALGVVWWVV 176
Y+ GA G +V
Sbjct: 265 SYLKGATGHSQGLV 278
Score = 29.2 bits (65), Expect = 1.3
Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 60/166 (36%)
Query: 79 AMFLISFAL----------PAAAYWDYKAMAG--LRIVQG-------VIGGLAWPSMHHL 119
A+ L+ A PA A AG L G + ++ S+ +
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADAT-----FAGHSL----GEYAALASLADVMSIESLVEV 1785
Query: 120 VAHWIPPTERSQFIT------SYLGSSFGVALSYPLCGVVIDTLGWEAAFYV-------T 166
V + R + S++G+ P G V + EA YV T
Sbjct: 1786 VFY------RGMTMQVAVPRDELGRSNYGMIAINP--GRVAASFSQEALQYVVERVGKRT 1837
Query: 167 GALGVVWWVVWMIVVYDTPD-QHPRVSAEEKEYIQQALGNTVSAKK 211
G W+V IV Y+ + Q+ V+A + + + N ++ K
Sbjct: 1838 G------WLVE-IVNYNVENQQY--VAAGDLRAL-DTVTNVLNFIK 1873
Score = 28.9 bits (64), Expect = 1.6
Identities = 38/210 (18%), Positives = 64/210 (30%), Gaps = 75/210 (35%)
Query: 37 WDSNVQNL--VLGSFFWLHWSTQ-------IPGGVLARSL--GTKV---VFGVSNLAM-F 81
W+S ++ + F++ +P +L SL V + +SNL
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 82 LISFA------LPAAAYWDYKAMAGLRIVQG----VIGGLAWPSMHHLVAHW-------- 123
+ + LPA + L V G V+ G S++ L
Sbjct: 349 VQDYVNKTNSHLPAGK----QVEISL--VNGAKNLVVSGPP-QSLYGLNLTLRKAKAPSG 401
Query: 124 -----IPPTER-----SQF--IT-----SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVT 166
IP +ER ++F + L A +V + + + A
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP----ASDLINKDLVKNNVSFNAK---- 453
Query: 167 GALGVVWWVVWMIVVYDTPD-QHPRVSAEE 195
+ I VYDT D RV +
Sbjct: 454 -DIQ--------IPVYDTFDGSDLRVLSGS 474
Score = 26.6 bits (58), Expect = 8.7
Identities = 28/138 (20%), Positives = 40/138 (28%), Gaps = 49/138 (35%)
Query: 6 EGLKSPS---QSPISLSSRGVLFQQDGDSGSL-----FH-------WDSNVQNLVLGSFF 50
K+PS QS I S R + F + L FH D ++LV +
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFS----NRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 51 WLHWSTQIPGGVLARSLGTKVVFGV---SNLAMFLISFALPAAAYWDYKAMAGLRIVQGV 107
+ QIP V+ S+L RIV +
Sbjct: 450 FNAKDIQIP------------VYDTFDGSDLR--------------VLSGSISERIVDCI 483
Query: 108 IGG-LAWPSMHHLVAHWI 124
I + W + A I
Sbjct: 484 IRLPVKWETTTQFKATHI 501
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 29.2 bits (66), Expect = 0.95
Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 22/69 (31%)
Query: 50 FWLHWSTQIPGGVLARSLGTKV----------VFGVSNLAMFLISF-----AL----PAA 90
F + T IP A LG V FGVS L P+
Sbjct: 99 FKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVS---TIFGGVDKNGAHLYMLEPSG 155
Query: 91 AYWDYKAMA 99
+YW YK A
Sbjct: 156 SYWGYKGAA 164
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 28.8 bits (65), Expect = 1.1
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 22/69 (31%)
Query: 50 FWLHWSTQIPGGVLARSLGTKV----------VFGVSNLAMFLISF-----AL----PAA 90
+ L + +I +LA+ + FGVS + + L P+
Sbjct: 103 YRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVS---LLIAGIDKNEARLFETDPSG 159
Query: 91 AYWDYKAMA 99
A +YKA A
Sbjct: 160 ALIEYKATA 168
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 28.8 bits (65), Expect = 1.1
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 21/68 (30%)
Query: 50 FWLHWSTQIPGGVLARSLGTKV----------VFGVSNLAMFLISF----AL----PAAA 91
L + I LA+ + FGVS + + L P+ A
Sbjct: 99 NRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVS---LLIAGVNEVPKLYETDPSGA 155
Query: 92 YWDYKAMA 99
+YKA A
Sbjct: 156 LLEYKATA 163
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 28.4 bits (64), Expect = 1.5
Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 22/69 (31%)
Query: 50 FWLHWSTQIPGGVLARSLGTKV----------VFGVSNLAMFLISF-----AL----PAA 90
F + T IP A LG V FGVS L P+
Sbjct: 95 FKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVS---TIFGGVDKNGAHLYMLEPSG 151
Query: 91 AYWDYKAMA 99
+YW YK A
Sbjct: 152 SYWGYKGAA 160
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 28.3 bits (64), Expect = 1.5
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 23/70 (32%)
Query: 50 FWLHWSTQIPGGVLARSLGTKV----------VFGVSNLAMFLISF------AL----PA 89
F + +P VLA+ + GV + +S ++ PA
Sbjct: 95 FRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVI---LTFVSVDEELGPSIYKTDPA 151
Query: 90 AAYWDYKAMA 99
Y YKA A
Sbjct: 152 GYYVGYKATA 161
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 28.5 bits (64), Expect = 1.6
Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 23/70 (32%)
Query: 50 FWLHWSTQIPGGVLARSLGTKV----------VFGVSNLAMFLISF----------ALPA 89
F ++ IP LA + V FG S L S+ P+
Sbjct: 98 FRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCS---FMLGSYSVNDGAQLYMIDPS 154
Query: 90 AAYWDYKAMA 99
+ Y A
Sbjct: 155 GVSYGYWGCA 164
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 28.4 bits (64), Expect = 1.7
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 23/70 (32%)
Query: 50 FWLHWSTQIPGGVLARSLGTKV----------VFGVSNLAMFLISF----------ALPA 89
L + + R + + FG+S ++ F P+
Sbjct: 94 HRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGIS---ALIVGFDFDGTPRLYQTDPS 150
Query: 90 AAYWDYKAMA 99
Y +KA A
Sbjct: 151 GTYHAWKANA 160
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 28.3 bits (64), Expect = 1.8
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 22/69 (31%)
Query: 50 FWLHWSTQIPGGVLARSLGTKV----------VFGVSNLAMFLISF-----AL----PAA 90
++L + IP L + + + + FGVS + + + L P+
Sbjct: 96 YYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVS---LLICGWNEGRPYLFQSDPSG 152
Query: 91 AYWDYKAMA 99
AY+ +KA A
Sbjct: 153 AYFAWKATA 161
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 28.1 bits (63), Expect = 2.0
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 23/70 (32%)
Query: 50 FWLHWSTQIPGGVLARSLGTKV----------VFGVSNLAMFLISF------AL----PA 89
+ L + IP L +L FGVS + I + L P+
Sbjct: 97 YLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVS---LLYIGWDKHYGFQLYQSDPS 153
Query: 90 AAYWDYKAMA 99
Y +KA
Sbjct: 154 GNYGGWKATC 163
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 28.0 bits (63), Expect = 2.0
Identities = 11/71 (15%), Positives = 16/71 (22%), Gaps = 24/71 (33%)
Query: 50 FWLHWSTQIPGGVLARSLGTKV----------VFGVSNLAMFLISFAL-----------P 88
L + L R + FGVS + F P
Sbjct: 94 HRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVS---TLIAGFDPRDDEPKLYQTEP 150
Query: 89 AAAYWDYKAMA 99
+ Y + A
Sbjct: 151 SGIYSSWSAQT 161
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 28.0 bits (63), Expect = 2.2
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 22/69 (31%)
Query: 50 FWLHWSTQIPGGVLARSLGTKV----------VFGVSNLAMFLISF-----AL----PAA 90
+ + + + L + + ++ +GVS + L PA
Sbjct: 99 EKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVS---LIFAGIDQIGPRLFDCDPAG 155
Query: 91 AYWDYKAMA 99
+YKA A
Sbjct: 156 TINEYKATA 164
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 27.6 bits (62), Expect = 2.3
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 22/69 (31%)
Query: 50 FWLHWSTQIPGGVLARSLGTKV----------VFGVSNLAMFLISF-----AL----PAA 90
L ++ ++ L K +GV + +I + L P+
Sbjct: 94 SSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVG---LLIIGYDKSGAHLLEFQPSG 150
Query: 91 AYWDYKAMA 99
+ A
Sbjct: 151 NVTELYGTA 159
>3di4_A Uncharacterized protein DUF1989; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 1.60A {Silicibacter pomeroyi}
Length = 286
Score = 27.7 bits (60), Expect = 2.6
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 76 SNLAMFLISFALPAAAYWDYKAMAG--LRIV---QGVIGGLAWPSMHHLVAHWIPPTERS 130
A +P ++ AG RI +G L ++H L + R+
Sbjct: 42 RASARKTGEVLVPPREGRCFEVKAGQFFRISSVEGPQVGDLNLHNLHDLTERFFSGKTRA 101
Query: 131 QFITSYLGSSFGVALSY------PLCGVVIDTLGW 159
T + G L P+ ++ DTLGW
Sbjct: 102 LHGTHV---TTGERLWSNLPYLRPMATIIEDTLGW 133
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 27.6 bits (62), Expect = 2.7
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 23/70 (32%)
Query: 50 FWLHWSTQIPGGVLARSLGTKV----------VFGVSNLAMFLISF------AL----PA 89
+ + P +L + + FGVS + + +L P+
Sbjct: 97 YKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVS---LLIAGHDEFNGFSLYQVDPS 153
Query: 90 AAYWDYKAMA 99
+Y+ +KA A
Sbjct: 154 GSYFPWKATA 163
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 27.2 bits (61), Expect = 3.3
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 22/69 (31%)
Query: 50 FWLHWSTQIPGGVLARSLGTKV----------VFGVSNLAMFLISF---------ALPAA 90
+ +P L +G+K +GV + + + P+A
Sbjct: 95 SRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVG---LLIAGYDDMGPHIFQTCPSA 151
Query: 91 AYWDYKAMA 99
Y+D +AM+
Sbjct: 152 NYFDCRAMS 160
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 27.3 bits (61), Expect = 3.5
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 23/70 (32%)
Query: 50 FWLHWSTQIPGGVLARSLGTKV----------VFGVSNLAMFLISF------AL----PA 89
+ ++ IP +L R L FGVS + L P+
Sbjct: 97 YLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVS---FIYAGYDDRYGYQLYTSNPS 153
Query: 90 AAYWDYKAMA 99
Y +KA++
Sbjct: 154 GNYTGWKAIS 163
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 27.2 bits (61), Expect = 3.7
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 23/70 (32%)
Query: 50 FWLHWSTQIPGGVLARSLGTKVV----------FGVSNLAMFLISF------AL----PA 89
+ + +IP +L + + G M LI + PA
Sbjct: 101 WKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCC---MILIGIDEEQGPQVYKCDPA 157
Query: 90 AAYWDYKAMA 99
Y +KA A
Sbjct: 158 GYYCGFKATA 167
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 27.2 bits (61), Expect = 4.3
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 7/115 (6%)
Query: 78 LAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYL 137
+++F+++ L A + +QG+ G+ L T+ S L
Sbjct: 72 MSIFMLA-TLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHAN-SLL 129
Query: 138 GSSFGVA--LSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPR 190
V+ L+ + G++ W A + L V + P+ P
Sbjct: 130 NMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCA---GVTFSMARWMPETRPV 181
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C*
2wu5_C* 2wu2_C*
Length = 129
Score = 26.2 bits (58), Expect = 5.3
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 73 FGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVA 121
V L L + + A+ G V+ ++ G+ +H+V
Sbjct: 39 VAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVV 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.439
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,371,050
Number of extensions: 199610
Number of successful extensions: 564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 43
Length of query: 211
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 122
Effective length of database: 4,216,824
Effective search space: 514452528
Effective search space used: 514452528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)