RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3615
         (211 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 25/181 (13%), Positives = 54/181 (29%), Gaps = 4/181 (2%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNL--AMFLISFALPAAAY 92
             +        L      +  ++   G ++     +V      +  A  ++       A 
Sbjct: 54  QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 113

Query: 93  WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCG 151
                M  L  + G   G+ WP     + HW    ER   ++      + G  +   L  
Sbjct: 114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 173

Query: 152 VVIDTLGWEA-AFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVSAK 210
           + +        A Y+     ++  +    ++ DTP        EE +       N  + +
Sbjct: 174 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ 233

Query: 211 K 211
           +
Sbjct: 234 E 234



 Score = 34.3 bits (77), Expect = 0.008
 Identities = 22/165 (13%), Positives = 48/165 (29%), Gaps = 5/165 (3%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
            H+  +  +     + +      +  G ++  +            M L++ A        
Sbjct: 280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP 339

Query: 95  YKAMAGLRIVQGVIG---GLAWPSMHHLVAHWIPPTERSQF--ITSYLGSSFGVALSYPL 149
                   I   VIG         +        P          T   G   G   +  +
Sbjct: 340 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI 399

Query: 150 CGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAE 194
            G  +D  GW+  F V     ++  ++ ++V+     +H ++  E
Sbjct: 400 VGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 7/91 (7%), Positives = 28/91 (30%), Gaps = 2/91 (2%)

Query: 93  WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERS--QFITSYLGSSFGVALSYPLC 150
                +  L+ +               +         +    +         +     L 
Sbjct: 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369

Query: 151 GVVIDTLGWEAAFYVTGALGVVWWVVWMIVV 181
           G + +++G++ A+ V G + + + ++ +  +
Sbjct: 370 GNMYESIGFQGAYLVLGLVALGFTLISVFTL 400


>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate
           uridylyltransferase {Escherichia coli [TaxId: 562]}
          Length = 171

 Score = 26.2 bits (57), Expect = 2.2
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 109 GGLAWPSMHHLVAHWIPPTERSQFITSYLGSS 140
                     L AH+ PP  RS  +  ++   
Sbjct: 108 FNGEENQHWQLHAHFYPPLLRSATVRKFMVGY 139


>d1x1ia1 a.102.3.2 (A:26-386) Xanthan lyase {Bacillus sp. gl1
           [TaxId: 84635]}
          Length = 361

 Score = 25.7 bits (56), Expect = 4.2
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 39  SNVQNLVLGSFFWLHWSTQIPGGVLARSL----GTKVVFGVSNL-AMFLISFALPAAAYW 93
           SNV   +  ++  L +   +   V  R +          G   + ++  ++   PA    
Sbjct: 258 SNVWQWIYEAYRPLLYKGAMMDMVRGREISRSYAQDHAVGHGIVASIVRLAQFAPAPHAA 317

Query: 94  DYKAMA 99
            +K +A
Sbjct: 318 AFKQIA 323


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.439 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 819,210
Number of extensions: 35853
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 9
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)