Query psy3616
Match_columns 143
No_of_seqs 144 out of 1113
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 21:08:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u7u_G Neuregulin 1; signaling 98.8 3.4E-09 1.2E-13 67.2 2.7 34 3-36 13-50 (55)
2 1a3p_A Epidermal growth factor 98.7 1E-08 3.5E-13 61.7 2.8 33 4-36 9-42 (45)
3 1edm_B Factor IX; epidermal gr 98.7 1.5E-08 5E-13 58.9 3.2 32 3-35 8-39 (39)
4 1nql_B Epidermal growth factor 98.7 6.7E-09 2.3E-13 65.1 1.8 35 3-37 11-46 (53)
5 1k36_A Epiregulin; EGF-like fo 98.6 2E-08 6.8E-13 61.2 3.2 32 4-36 12-44 (46)
6 1egf_A Epidermal growth factor 98.6 2.9E-08 9.8E-13 61.8 4.0 34 4-37 12-46 (53)
7 3ca7_A Protein spitz; argos, E 98.5 1.6E-08 5.4E-13 62.8 1.2 33 4-36 14-49 (52)
8 3e50_C Protransforming growth 98.5 4.5E-08 1.5E-12 61.0 3.2 33 3-36 13-46 (50)
9 1hae_A Heregulin-alpha; growth 98.5 4.3E-08 1.5E-12 62.8 3.2 35 3-37 11-49 (63)
10 1iox_A Betacellulin; EGF-like 98.5 2.9E-08 9.9E-13 61.7 1.7 33 3-36 13-46 (50)
11 3ltf_D Protein spitz; receptor 98.5 3.2E-08 1.1E-12 63.1 1.4 32 5-36 15-49 (58)
12 2rnl_A Amphiregulin; AR, color 98.5 8.8E-08 3E-12 59.6 3.0 32 3-35 17-49 (50)
13 1xdt_R Hbegf, heparin-binding 98.2 3.8E-07 1.3E-11 61.8 1.9 33 3-36 45-78 (79)
14 2k2s_B Micronemal protein 6; m 98.2 6.1E-07 2.1E-11 57.8 2.2 33 3-36 16-51 (61)
15 1tpg_A T-plasminogen activator 98.1 2E-06 6.9E-11 58.6 3.8 33 4-36 54-87 (91)
16 1q4g_A Prostaglandin G/H synth 97.7 1.2E-05 4E-10 71.0 2.5 34 3-37 7-42 (553)
17 1aut_L Activated protein C; se 97.7 1.9E-05 6.5E-10 55.4 2.9 34 2-36 18-51 (114)
18 2fd6_A Urokinase-type plasmino 97.7 2.7E-05 9.2E-10 55.9 3.3 33 5-37 2-36 (122)
19 1x7a_L Coagulation factor IX, 97.6 2.9E-05 9.9E-10 57.0 3.3 33 3-36 53-85 (146)
20 2c4f_L Coagulation factor VII 97.6 2.5E-05 8.4E-10 56.9 2.4 32 3-35 52-83 (142)
21 3nt1_A Prostaglandin-endoperox 97.6 2.1E-05 7.3E-10 69.9 2.0 35 3-37 6-41 (587)
22 2i9a_A Urokinase-type plasmino 97.5 7.8E-05 2.7E-09 55.2 3.7 33 5-37 14-48 (145)
23 2vj3_A Neurogenic locus notch 97.4 9.5E-05 3.3E-09 53.0 3.3 32 4-36 89-120 (135)
24 2vj3_A Neurogenic locus notch 97.4 0.00013 4.4E-09 52.3 3.5 31 4-35 13-43 (135)
25 1nfu_B Coagulation factor XA, 97.3 2.9E-05 9.8E-10 60.2 0.0 33 3-36 47-79 (195)
26 2ks1_B Epidermal growth factor 97.3 0.00017 5.6E-09 43.7 3.4 32 38-70 9-40 (44)
27 4d90_A EGF-like repeat and dis 97.3 0.00012 4.1E-09 52.3 2.9 34 3-36 5-39 (143)
28 2vh0_B Activated factor XA lig 97.3 3.5E-05 1.2E-09 55.6 0.0 32 3-35 47-78 (134)
29 2jwa_A Receptor tyrosine-prote 97.3 0.00018 6.3E-09 43.5 3.1 32 41-74 13-44 (44)
30 3h5c_B Vitamin K-dependent pro 97.2 8.5E-05 2.9E-09 59.6 1.7 30 4-34 11-40 (317)
31 2l2t_A Receptor tyrosine-prote 97.2 0.00022 7.6E-09 43.1 3.0 32 40-72 10-41 (44)
32 3asi_A Neurexin-1-alpha; beta- 97.0 0.00035 1.2E-08 58.1 3.4 33 4-37 191-224 (410)
33 4d90_A EGF-like repeat and dis 97.0 0.00024 8.3E-09 50.7 2.1 32 4-35 58-95 (143)
34 1emn_A Fibrillin; extracellula 96.6 0.00078 2.7E-08 44.5 1.9 30 4-35 12-43 (82)
35 2knc_B Integrin beta-3; transm 96.5 0.0014 4.7E-08 44.1 2.6 36 30-65 1-36 (79)
36 2ygq_A WIF-1, WNT inhibitory f 96.5 0.0012 4E-08 54.3 2.6 30 2-35 151-180 (324)
37 3qcw_A Neurexin-1-alpha; synap 96.4 0.0017 5.7E-08 61.5 3.4 33 4-37 1023-1056(1245)
38 2bou_A EGF-like module contain 96.2 0.0018 6.3E-08 46.3 2.2 27 1-31 4-30 (143)
39 2ygq_A WIF-1, WNT inhibitory f 96.1 0.0033 1.1E-07 51.6 3.1 30 2-35 183-212 (324)
40 4fbr_A Lectin, myxobacterial h 96.0 0.00031 1.1E-08 57.0 -3.4 34 3-37 104-137 (267)
41 1klo_A Laminin; glycoprotein; 95.9 0.0035 1.2E-07 46.5 2.3 33 5-37 2-36 (162)
42 4fbr_A Lectin, myxobacterial h 95.8 0.00032 1.1E-08 57.0 -4.0 35 2-37 36-70 (267)
43 2bou_A EGF-like module contain 95.8 0.0046 1.6E-07 44.2 2.5 30 5-35 54-83 (143)
44 1z1y_A Ookinete surface protei 95.8 0.0028 9.5E-08 47.3 1.3 31 3-35 10-43 (186)
45 1z6c_A Vitamin K-dependent pro 95.8 0.0017 5.7E-08 43.2 0.1 28 6-35 13-44 (87)
46 3qcw_A Neurexin-1-alpha; synap 95.8 0.005 1.7E-07 58.2 3.3 31 4-35 625-656 (1245)
47 2wg3_C Hedgehog-interacting pr 95.8 0.0015 5.1E-08 56.0 -0.3 29 2-35 395-423 (463)
48 2w86_A Fibrillin-1, fibrillin1 95.7 0.0038 1.3E-07 44.9 1.9 29 4-34 10-38 (147)
49 1z1y_A Ookinete surface protei 95.7 0.0027 9.3E-08 47.4 1.1 31 3-34 53-88 (186)
50 1emn_A Fibrillin; extracellula 95.7 0.0062 2.1E-07 40.0 2.6 28 3-32 50-77 (82)
51 3zyj_B Netrin-G1; cell adhesio 95.3 0.0029 9.8E-08 54.4 0.0 29 4-36 371-399 (426)
52 2gy5_A Angiopoietin-1 receptor 95.2 0.0087 3E-07 50.9 2.5 28 5-35 204-231 (423)
53 1lmj_A Fibrillin 1; EGF, calci 95.1 0.0061 2.1E-07 40.2 1.2 29 5-35 12-45 (86)
54 2l8s_A Integrin alpha-1; trans 95.1 0.014 4.9E-07 36.5 2.7 32 40-71 10-41 (54)
55 1yo8_A Thrombospondin-2; EGF, 95.0 0.012 4E-07 52.9 3.0 32 3-34 8-42 (634)
56 1uzk_A Fibrillin-1; glycoprote 94.9 0.012 4.1E-07 42.9 2.3 30 4-35 10-43 (162)
57 2gy5_A Angiopoietin-1 receptor 94.6 0.023 7.9E-07 48.2 3.6 31 2-35 248-278 (423)
58 1yo8_A Thrombospondin-2; EGF, 94.3 0.019 6.5E-07 51.5 2.6 31 4-35 110-146 (634)
59 2k9j_B Integrin beta-3; transm 94.3 0.035 1.2E-06 33.0 3.0 38 33-70 3-40 (43)
60 2c4f_L Coagulation factor VII 94.2 0.019 6.4E-07 41.3 2.0 32 5-37 92-131 (142)
61 1apq_A Complement protease C1R 94.2 0.025 8.7E-07 33.7 2.3 24 4-30 20-43 (53)
62 3p5b_L Low density lipoprotein 94.1 0.023 7.9E-07 46.9 2.4 31 4-35 6-39 (400)
63 2ks1_B Epidermal growth factor 94.0 0.062 2.1E-06 32.2 3.5 32 45-76 12-43 (44)
64 2l2t_A Receptor tyrosine-prote 93.9 0.078 2.7E-06 31.8 3.9 33 44-76 10-42 (44)
65 1gl4_A Nidogen-1, entactin; im 93.6 0.031 1.1E-06 45.7 2.4 31 4-35 13-45 (285)
66 2w2n_E LDL receptor, low-densi 93.4 0.023 7.8E-07 39.3 1.1 24 11-35 42-68 (107)
67 3fcs_B Integrin beta-3; beta p 93.1 0.017 5.7E-07 52.2 -0.0 32 4-36 440-474 (690)
68 2klu_A T-cell surface glycopro 93.0 0.11 3.7E-06 33.9 3.8 33 46-78 13-45 (70)
69 2k1a_A Integrin alpha-IIB; sin 93.0 0.039 1.3E-06 32.8 1.5 26 38-63 9-34 (42)
70 3t5o_A Complement component C6 93.0 0.056 1.9E-06 49.9 3.3 34 2-37 502-535 (913)
71 1lmj_A Fibrillin 1; EGF, calci 92.6 0.075 2.6E-06 34.8 2.7 25 6-32 56-80 (86)
72 2knc_A Integrin alpha-IIB; tra 92.6 0.099 3.4E-06 32.6 3.1 28 40-67 13-40 (54)
73 2vh0_B Activated factor XA lig 92.6 0.04 1.4E-06 39.3 1.4 29 5-36 90-122 (134)
74 2p28_B Integrin beta-2; hybrid 92.5 0.062 2.1E-06 41.9 2.5 28 4-36 96-123 (217)
75 1nfu_B Coagulation factor XA, 92.3 0.044 1.5E-06 42.1 1.4 30 5-37 90-123 (195)
76 1aut_L Activated protein C; se 92.2 0.071 2.4E-06 36.8 2.3 25 11-36 67-95 (114)
77 3fcs_B Integrin beta-3; beta p 92.1 0.093 3.2E-06 47.4 3.4 27 4-35 573-600 (690)
78 1dx5_I Thrombomodulin; serine 92.1 0.066 2.3E-06 37.2 2.0 28 4-33 10-37 (118)
79 1iij_A ERBB-2 receptor protein 92.0 0.03 1E-06 32.1 0.1 25 42-68 10-34 (35)
80 2k1k_A Ephrin type-A receptor 92.0 0.079 2.7E-06 30.7 1.9 21 42-62 13-33 (38)
81 2vj2_A Jagged-1; signalling, p 91.8 0.055 1.9E-06 39.9 1.4 30 2-35 68-98 (169)
82 1z6c_A Vitamin K-dependent pro 91.4 0.14 4.7E-06 33.7 2.9 29 4-36 51-79 (87)
83 2e26_A Reelin, reeler protein; 91.4 0.066 2.3E-06 48.7 1.7 31 1-36 536-566 (725)
84 2kl7_A Fibulin-4; secreted, ca 91.2 0.087 3E-06 34.0 1.7 19 4-23 11-29 (71)
85 1x7a_L Coagulation factor IX, 90.6 0.056 1.9E-06 39.2 0.4 30 5-37 94-128 (146)
86 2jkh_L Factor X light chain; p 90.2 0.11 3.8E-06 31.6 1.4 30 4-36 9-42 (55)
87 3k6s_B Integrin beta-2; cell r 89.9 0.1 3.5E-06 47.2 1.5 26 5-35 567-592 (687)
88 3v65_B Low-density lipoprotein 89.4 0.069 2.4E-06 43.6 0.0 24 10-34 15-42 (386)
89 2p28_B Integrin beta-2; hybrid 89.3 0.18 6.2E-06 39.2 2.4 27 4-35 143-175 (217)
90 1dx5_I Thrombomodulin; serine 88.8 0.11 3.6E-06 36.1 0.7 32 2-35 42-79 (118)
91 3h5c_B Vitamin K-dependent pro 87.7 0.31 1.1E-05 38.6 2.8 25 4-31 52-76 (317)
92 3v65_B Low-density lipoprotein 86.7 0.19 6.4E-06 41.0 1.0 30 4-36 51-84 (386)
93 3k6s_B Integrin beta-2; cell r 85.1 0.41 1.4E-05 43.2 2.5 26 5-35 483-514 (687)
94 2lk9_A Bone marrow stromal ant 84.1 1.1 3.6E-05 25.4 3.0 21 48-68 10-30 (35)
95 2k9y_A Ephrin type-A receptor 84.0 0.48 1.7E-05 27.1 1.7 8 42-49 15-22 (41)
96 3nsj_A Perforin-1; pore formin 84.0 0.69 2.4E-05 40.5 3.4 34 2-37 356-391 (540)
97 2ddu_A Reelin; beta-jelly-roll 83.0 0.27 9.4E-06 41.7 0.4 31 1-36 193-225 (387)
98 1kig_L Factor XA; glycoprotein 82.5 0.23 7.9E-06 29.8 -0.2 30 4-36 6-39 (51)
99 2knc_B Integrin beta-3; transm 81.8 0.87 3E-05 30.2 2.5 28 41-68 9-36 (79)
100 4aqs_A Laminin subunit beta-1; 81.1 0.61 2.1E-05 40.0 1.9 32 5-36 442-476 (525)
101 2bz6_L Blood coagulation facto 79.9 0.72 2.5E-05 27.8 1.4 30 4-36 7-41 (53)
102 2jo1_A Phospholemman; FXYD1, N 79.3 3.4 0.00011 27.0 4.5 13 46-58 18-30 (72)
103 2e26_A Reelin, reeler protein; 78.7 0.76 2.6E-05 41.9 1.7 31 1-35 187-217 (725)
104 2jp3_A FXYD domain-containing 78.2 2.4 8.2E-05 27.4 3.5 16 46-61 19-34 (67)
105 2jwa_A Receptor tyrosine-prote 78.1 3.2 0.00011 24.6 3.9 30 47-76 14-43 (44)
106 1pi7_A VPU protein, U ORF prot 76.0 3.2 0.00011 23.6 3.3 14 53-66 14-27 (36)
107 3ojy_B Complement component C8 75.8 1.3 4.3E-05 38.7 2.3 33 2-36 451-483 (537)
108 2zxe_G FXYD10, phospholemman-l 75.3 1.7 6E-05 28.6 2.3 26 44-69 19-44 (74)
109 2l8s_A Integrin alpha-1; trans 73.7 4.9 0.00017 24.9 4.0 31 43-74 10-40 (54)
110 2p26_A Integrin beta-2; hybrid 72.3 1.5 5.1E-05 35.4 1.7 26 6-36 198-223 (280)
111 3ojy_A Complement component C8 72.1 1.8 6.2E-05 37.9 2.4 33 2-36 469-501 (554)
112 3m0c_C LDL receptor, low-densi 70.7 2.1 7.2E-05 38.8 2.5 30 4-34 313-350 (791)
113 2wph_E Coagulation factor IXA 70.6 2.5 8.6E-05 25.9 2.1 29 4-35 7-40 (59)
114 1tpg_A T-plasminogen activator 69.9 1.6 5.6E-05 28.7 1.3 18 19-36 1-18 (91)
115 3p5b_L Low density lipoprotein 69.2 1.9 6.5E-05 35.2 1.7 29 4-35 47-79 (400)
116 3fby_A COMP, cartilage oligome 69.1 2.8 9.7E-05 37.0 2.9 33 4-36 27-61 (551)
117 2w2n_E LDL receptor, low-densi 68.8 1 3.4E-05 30.8 0.0 22 10-32 80-101 (107)
118 2k9j_B Integrin beta-3; transm 68.1 3.7 0.00013 24.1 2.4 33 42-74 9-41 (43)
119 1klo_A Laminin; glycoprotein; 67.0 1.6 5.6E-05 31.8 0.8 24 11-37 125-148 (162)
120 2knc_A Integrin alpha-IIB; tra 66.3 11 0.00039 23.1 4.5 32 42-74 12-43 (54)
121 1kli_L Factor VIIA; extrinsic 65.7 2.5 8.5E-05 26.9 1.4 25 11-36 18-47 (69)
122 2klu_A T-cell surface glycopro 64.4 1.9 6.6E-05 28.0 0.7 33 42-74 12-45 (70)
123 4aqs_A Laminin subunit beta-1; 64.4 2.5 8.5E-05 36.1 1.6 21 17-37 276-296 (525)
124 1uzk_A Fibrillin-1; glycoprote 61.9 0.68 2.3E-05 33.3 -2.1 28 7-35 59-91 (162)
125 3v64_C Agrin; beta propeller, 61.8 1.4 4.8E-05 35.2 -0.4 24 11-35 13-40 (349)
126 3g5c_A ADAM 22; alpha/beta fol 60.2 3.2 0.00011 36.1 1.5 30 4-37 454-483 (510)
127 1n7d_A LDL receptor, low-densi 60.0 2.8 9.6E-05 37.1 1.2 23 11-34 307-332 (699)
128 2k1k_A Ephrin type-A receptor 59.6 15 0.00051 20.8 3.9 27 43-69 10-37 (38)
129 4aqt_A Laminin subunit gamma-1 56.5 3.5 0.00012 34.5 1.1 32 6-37 257-289 (375)
130 3j0c_A E1 envelope glycoprotei 56.1 8.3 0.00028 32.8 3.3 24 45-68 416-439 (442)
131 1afo_A Glycophorin A; integral 55.0 13 0.00046 21.4 3.1 20 42-61 12-31 (40)
132 1ob1_C Major merozoite surface 54.8 7.2 0.00025 26.9 2.3 27 5-31 11-37 (99)
133 3zyj_B Netrin-G1; cell adhesio 54.6 4.5 0.00015 34.6 1.5 27 10-37 304-330 (426)
134 1n1i_A Merozoite surface prote 53.6 9.9 0.00034 26.5 2.9 26 6-31 18-43 (105)
135 2jp3_A FXYD domain-containing 52.6 11 0.00037 24.3 2.7 16 46-61 23-38 (67)
136 4aqt_A Laminin subunit gamma-1 48.3 6.1 0.00021 33.0 1.3 20 18-37 332-352 (375)
137 3m0c_C LDL receptor, low-densi 47.0 5.1 0.00017 36.3 0.6 33 2-35 355-391 (791)
138 3sov_A LRP-6, low-density lipo 46.0 12 0.00042 29.4 2.7 28 3-30 267-300 (318)
139 2k21_A Potassium voltage-gated 40.9 44 0.0015 24.2 4.7 12 60-71 70-81 (138)
140 2kih_A Matrix protein 2; S31N, 38.4 6.5 0.00022 22.9 -0.0 20 32-51 1-20 (43)
141 2jo1_A Phospholemman; FXYD1, N 35.7 84 0.0029 20.3 5.0 16 46-61 22-37 (72)
142 1lr7_A Follistatin, FS1; hepar 35.0 32 0.0011 21.4 3.0 22 5-26 8-29 (74)
143 1v54_M VIIIB, IX, cytochrome C 33.9 51 0.0018 19.5 3.5 25 48-72 19-43 (46)
144 2yew_B E1 envelope glycoprotei 33.7 29 0.001 29.4 3.2 7 59-65 418-424 (427)
145 3s8f_C Cytochrome C oxidase po 32.6 62 0.0021 17.9 3.5 15 48-62 10-24 (34)
146 2y38_A Laminin subunit alpha-5 29.8 19 0.00063 30.4 1.4 20 18-37 355-375 (403)
147 2y38_A Laminin subunit alpha-5 29.4 26 0.00089 29.5 2.2 32 6-37 268-303 (403)
148 2lx0_A Membrane fusion protein 29.1 71 0.0024 17.1 3.2 18 46-63 9-26 (32)
149 2l9u_A Receptor tyrosine-prote 27.8 71 0.0024 18.0 3.2 7 62-68 27-33 (40)
150 3s94_A LRP-6, low-density lipo 25.5 87 0.003 27.1 4.9 26 11-36 285-315 (619)
151 2qjy_B Cytochrome C1; cytochro 25.3 65 0.0022 25.8 3.8 6 65-70 248-253 (269)
152 1zrt_D Cytochrome C1; cytochro 24.5 78 0.0027 25.1 4.1 9 53-61 233-241 (258)
153 2d56_A Asabf; antibacterial pe 24.0 63 0.0021 19.6 2.6 21 4-26 30-50 (53)
154 3qho_A Endoglucanase, 458AA lo 24.0 16 0.00056 30.8 0.0 15 54-68 442-456 (458)
155 4a94_C Carboxypeptidase inhibi 23.9 10 0.00035 22.6 -0.9 33 3-35 6-40 (53)
156 3sek_C Follistatin-related pro 23.3 50 0.0017 25.2 2.6 21 5-26 68-88 (209)
157 2yew_C E2 envelope glycoprotei 23.2 58 0.002 27.7 3.2 14 56-69 380-393 (421)
158 3f1s_B Vitamin K-dependent pro 23.2 25 0.00086 27.0 0.9 24 11-35 16-43 (283)
159 2arp_F Follistatin; cystine kn 23.1 68 0.0023 22.7 3.2 25 2-26 6-31 (152)
160 1ixt_A Spasmodic protein TX9A- 22.9 24 0.0008 18.5 0.5 13 1-13 1-13 (27)
161 4a0p_A LRP6, LRP-6, low-densit 22.6 49 0.0017 28.7 2.8 27 11-37 278-308 (628)
162 2lp1_A C99; alzheimer'S D memb 28.1 18 0.00063 25.7 0.0 8 117-124 84-91 (122)
163 1pp9_D Cytochrome C-1, cytochr 22.0 64 0.0022 25.4 3.1 7 64-70 222-228 (241)
164 1n7d_A LDL receptor, low-densi 21.8 29 0.00099 30.5 1.1 25 10-35 345-373 (699)
165 2lkq_A Immunoglobulin lambda-l 21.8 31 0.0011 17.7 0.8 8 27-34 18-25 (26)
166 2y69_M Cytochrome C oxidase po 21.8 1.1E+02 0.0037 19.7 3.6 26 47-72 42-67 (70)
167 1jlz_A Tityustoxin alpha-KTX; 21.6 17 0.00057 19.2 -0.3 20 2-26 5-24 (26)
168 1nl1_A Prothrombin; hydrolase; 21.2 14 0.00047 26.9 -0.9 30 6-36 61-90 (147)
169 4deq_A Neuropilin-1, vascular 20.6 6.3 0.00021 30.3 -3.0 32 5-37 172-203 (218)
No 1
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=98.76 E-value=3.4e-09 Score=67.22 Aligned_cols=34 Identities=29% Similarity=0.746 Sum_probs=28.9
Q ss_pred CCCCCCCcEEEeC----CCCCCeeeecCCCcCCCcccc
Q psy3616 3 KGYCENKGTCVKD----ARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 3 ~~~C~NgG~C~~~----~~~~~~C~C~~gy~G~rCe~~ 36 (143)
.+||+|||+|... ..+.+.|.|++||+|++||..
T Consensus 13 s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~ 50 (55)
T 3u7u_G 13 KTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNY 50 (55)
T ss_dssp TTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEE
T ss_pred CCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCcc
Confidence 4799999999642 257899999999999999975
No 2
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=98.67 E-value=1e-08 Score=61.74 Aligned_cols=33 Identities=30% Similarity=0.819 Sum_probs=28.5
Q ss_pred CCCCCCcEEEe-CCCCCCeeeecCCCcCCCcccc
Q psy3616 4 GYCENKGTCVK-DARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 4 ~~C~NgG~C~~-~~~~~~~C~C~~gy~G~rCe~~ 36 (143)
+||+|+|+|+. ...+.+.|.|++||+|.+||..
T Consensus 9 ~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~ 42 (45)
T 1a3p_A 9 GYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTR 42 (45)
T ss_dssp SCCSSSCEEEECTTTSSEEEECCTTEETTTTCEE
T ss_pred CCCCCCCEEEeecCCCCEEEEcCCCCcCCcCCcc
Confidence 49999999984 2367899999999999999964
No 3
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=98.66 E-value=1.5e-08 Score=58.92 Aligned_cols=32 Identities=31% Similarity=0.661 Sum_probs=29.4
Q ss_pred CCCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616 3 KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35 (143)
Q Consensus 3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~ 35 (143)
.+||+|+|+|+.. .+.+.|.|++||+|.+||.
T Consensus 8 ~~pC~ngg~C~~~-~~~~~C~C~~G~~G~~Ce~ 39 (39)
T 1edm_B 8 SNPCLNGGSCKDD-INSYECWCPFGFEGKNCEL 39 (39)
T ss_dssp TCCCCTTCEEEEE-TTEEEEECCTTCCSTTSCC
T ss_pred CCCCCCCCEeEcC-CCceEeECCCCCcCCccCC
Confidence 4799999999988 8889999999999999984
No 4
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=98.66 E-value=6.7e-09 Score=65.12 Aligned_cols=35 Identities=34% Similarity=0.931 Sum_probs=30.0
Q ss_pred CCCCCCCcEEEe-CCCCCCeeeecCCCcCCCccccc
Q psy3616 3 KGYCENKGTCVK-DARGQPSCRCVGSFIGPHCAQKS 37 (143)
Q Consensus 3 ~~~C~NgG~C~~-~~~~~~~C~C~~gy~G~rCe~~~ 37 (143)
.+||+|||+|+. ...+.+.|.|++||+|.+||...
T Consensus 11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~~ 46 (53)
T 1nql_B 11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRD 46 (53)
T ss_dssp CCEECTTCEEEEETTTTEEEEEECTTEESTTSCEEC
T ss_pred CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCcCC
Confidence 589999999984 23678999999999999999753
No 5
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=98.63 E-value=2e-08 Score=61.20 Aligned_cols=32 Identities=34% Similarity=0.832 Sum_probs=28.0
Q ss_pred CCCCCCcEEEeC-CCCCCeeeecCCCcCCCcccc
Q psy3616 4 GYCENKGTCVKD-ARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 4 ~~C~NgG~C~~~-~~~~~~C~C~~gy~G~rCe~~ 36 (143)
+||+| |+|... ..+.+.|.|++||+|.+||..
T Consensus 12 ~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~~ 44 (46)
T 1k36_A 12 GYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEHF 44 (46)
T ss_dssp SSCSS-EEEEEETTTTEEEEEECTTCSSTTSCCC
T ss_pred CCCCC-CEeeccCCCCCEEEECCCCCccCCCCcc
Confidence 69999 899975 246899999999999999974
No 6
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=98.62 E-value=2.9e-08 Score=61.77 Aligned_cols=34 Identities=32% Similarity=0.914 Sum_probs=29.2
Q ss_pred CCCCCCcEEEe-CCCCCCeeeecCCCcCCCccccc
Q psy3616 4 GYCENKGTCVK-DARGQPSCRCVGSFIGPHCAQKS 37 (143)
Q Consensus 4 ~~C~NgG~C~~-~~~~~~~C~C~~gy~G~rCe~~~ 37 (143)
+||+|||+|+. ...+.+.|.|++||+|.+||...
T Consensus 12 ~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~ 46 (53)
T 1egf_A 12 GYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD 46 (53)
T ss_dssp CSSCSSCEEEEESSSSCEEEECCTTCCSSSSCCCS
T ss_pred CcCCCCcEEEeeCCCCCEEEECCCCCcCCcCCccC
Confidence 39999999994 22778999999999999999854
No 7
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=98.55 E-value=1.6e-08 Score=62.80 Aligned_cols=33 Identities=33% Similarity=0.684 Sum_probs=28.1
Q ss_pred CCCCCCcEEEeC---CCCCCeeeecCCCcCCCcccc
Q psy3616 4 GYCENKGTCVKD---ARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 4 ~~C~NgG~C~~~---~~~~~~C~C~~gy~G~rCe~~ 36 (143)
+||+|||+|+.. ..+.+.|.|+.||+|++||..
T Consensus 14 ~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~~ 49 (52)
T 3ca7_A 14 WYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49 (52)
T ss_dssp HTSCTTCEEEEEEETTEEEEEEECCTTEESTTSCEE
T ss_pred CcCCCCCEEecCccCCCCCEEEECCCCCcCCCCccc
Confidence 589999999963 145789999999999999964
No 8
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=98.54 E-value=4.5e-08 Score=60.99 Aligned_cols=33 Identities=24% Similarity=0.756 Sum_probs=29.1
Q ss_pred CCCCCCCcEEEeC-CCCCCeeeecCCCcCCCcccc
Q psy3616 3 KGYCENKGTCVKD-ARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 3 ~~~C~NgG~C~~~-~~~~~~C~C~~gy~G~rCe~~ 36 (143)
++||+|| +|... +.+.+.|+|++||+|+|||..
T Consensus 13 ~~yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe~~ 46 (50)
T 3e50_C 13 TQFCFHG-TCRFLVQEDKPACVCHSGYVGARCEHA 46 (50)
T ss_pred cCcccCC-EEeeccCCCCeEEECCCCCcccCCCce
Confidence 5799986 99986 567899999999999999975
No 9
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=98.54 E-value=4.3e-08 Score=62.81 Aligned_cols=35 Identities=29% Similarity=0.755 Sum_probs=29.6
Q ss_pred CCCCCCCcEEEeC----CCCCCeeeecCCCcCCCccccc
Q psy3616 3 KGYCENKGTCVKD----ARGQPSCRCVGSFIGPHCAQKS 37 (143)
Q Consensus 3 ~~~C~NgG~C~~~----~~~~~~C~C~~gy~G~rCe~~~ 37 (143)
.+||+|||+|+.. ..+.+.|.|++||+|.+|+...
T Consensus 11 ~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i 49 (63)
T 1hae_A 11 KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49 (63)
T ss_dssp HTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEEC
T ss_pred CCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCc
Confidence 3799999999972 2578999999999999999653
No 10
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Probab=98.51 E-value=2.9e-08 Score=61.72 Aligned_cols=33 Identities=39% Similarity=0.869 Sum_probs=28.8
Q ss_pred CCCCCCCcEEEeC-CCCCCeeeecCCCcCCCcccc
Q psy3616 3 KGYCENKGTCVKD-ARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 3 ~~~C~NgG~C~~~-~~~~~~C~C~~gy~G~rCe~~ 36 (143)
+++|+| |+|... +.+.+.|+|+.||+|+|||..
T Consensus 13 ~~yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe~~ 46 (50)
T 1iox_A 13 KHYCIK-GRCRFVVAEQTPSCVCDEGYIGARCERV 46 (50)
T ss_dssp TTSCTT-CCEEEETTTTEEEECCCTTEETTTTCEE
T ss_pred cCcccC-CEEEeEcCCCCeEEECCCCcccCCCCee
Confidence 589999 899755 577899999999999999975
No 11
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Probab=98.48 E-value=3.2e-08 Score=63.09 Aligned_cols=32 Identities=34% Similarity=0.747 Sum_probs=27.5
Q ss_pred CCCCCcEEEeC---CCCCCeeeecCCCcCCCcccc
Q psy3616 5 YCENKGTCVKD---ARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 5 ~C~NgG~C~~~---~~~~~~C~C~~gy~G~rCe~~ 36 (143)
||+|||+|... ..+.+.|.|++||+|.+||..
T Consensus 15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~~ 49 (58)
T 3ltf_D 15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49 (58)
T ss_dssp TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCEE
T ss_pred cCCCCCEEeCCccCCCCCEEeECCCCCccCCCccc
Confidence 89999999842 255789999999999999975
No 12
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=98.46 E-value=8.8e-08 Score=59.62 Aligned_cols=32 Identities=22% Similarity=0.760 Sum_probs=27.9
Q ss_pred CCCCCCCcEEEeC-CCCCCeeeecCCCcCCCccc
Q psy3616 3 KGYCENKGTCVKD-ARGQPSCRCVGSFIGPHCAQ 35 (143)
Q Consensus 3 ~~~C~NgG~C~~~-~~~~~~C~C~~gy~G~rCe~ 35 (143)
+++|+| |+|... +.+.+.|+|+.+|+|+|||.
T Consensus 17 ~~yC~n-G~C~~i~~~~~~~C~C~~gy~G~RCe~ 49 (50)
T 2rnl_A 17 QNFCIH-GECKYIEHLEAVTCKCQQEYFGERCGE 49 (50)
T ss_dssp GGTCSS-SEEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred hCcCCC-CEEEEecCCCCeeEECCCCcccccccc
Confidence 489998 599855 56789999999999999996
No 13
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1
Probab=98.22 E-value=3.8e-07 Score=61.83 Aligned_cols=33 Identities=27% Similarity=0.637 Sum_probs=28.0
Q ss_pred CCCCCCCcEEEeC-CCCCCeeeecCCCcCCCcccc
Q psy3616 3 KGYCENKGTCVKD-ARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 3 ~~~C~NgG~C~~~-~~~~~~C~C~~gy~G~rCe~~ 36 (143)
+++|+|| +|... +.+.+.|+|++||+|.|||..
T Consensus 45 ~~yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE~l 78 (79)
T 1xdt_R 45 KDFCIHG-ECKYVKELRAPSCICHPGYHGERCHGL 78 (79)
T ss_dssp TTCCSSE-EECCBGGGTBCCEEECTTEESTTCCEE
T ss_pred cCcCCCC-EeeeecCCCCeEEEcCCCccccccccc
Confidence 5899985 99765 457899999999999999964
No 14
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=98.18 E-value=6.1e-07 Score=57.82 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=30.0
Q ss_pred CCCCCCC--cEEEeCCCCCCeeeecCCCc-CCCcccc
Q psy3616 3 KGYCENK--GTCVKDARGQPSCRCVGSFI-GPHCAQK 36 (143)
Q Consensus 3 ~~~C~Ng--G~C~~~~~~~~~C~C~~gy~-G~rCe~~ 36 (143)
.+||.|| |+|+.. .+.+.|.|++||+ |.+|+..
T Consensus 16 snPC~nga~gtC~~~-~g~y~C~C~~Gy~~G~~C~~~ 51 (61)
T 2k2s_B 16 SNPCGPEAAGTCKET-NSGYICRCNQGYRISLDGTGN 51 (61)
T ss_dssp HCSSCSSSCCEEEEC-SSEEEEECCTTEEEEECSSSC
T ss_pred CCCCcCCCccccccC-CCceEeECCCCCccCCCCCCC
Confidence 3799999 999998 8889999999999 9999864
No 15
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=98.11 E-value=2e-06 Score=58.58 Aligned_cols=33 Identities=30% Similarity=0.634 Sum_probs=29.2
Q ss_pred CCCCCCcEEEeC-CCCCCeeeecCCCcCCCcccc
Q psy3616 4 GYCENKGTCVKD-ARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 4 ~~C~NgG~C~~~-~~~~~~C~C~~gy~G~rCe~~ 36 (143)
+||+|+|+|+.. ..+.+.|.|++||+|.+||..
T Consensus 54 ~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~ 87 (91)
T 1tpg_A 54 PRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEID 87 (91)
T ss_dssp CCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBC
T ss_pred CCCCCCCEeecCCCCCCeEeECCCCCcCCcCCcC
Confidence 689999999987 138899999999999999964
No 16
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=97.72 E-value=1.2e-05 Score=71.00 Aligned_cols=34 Identities=26% Similarity=0.759 Sum_probs=31.0
Q ss_pred CCCCCCCcEEEe-CCCCCCeeeec-CCCcCCCccccc
Q psy3616 3 KGYCENKGTCVK-DARGQPSCRCV-GSFIGPHCAQKS 37 (143)
Q Consensus 3 ~~~C~NgG~C~~-~~~~~~~C~C~-~gy~G~rCe~~~ 37 (143)
.+||+|||+|.. . .+.+.|.|+ .||+|.+||...
T Consensus 7 ~~PC~ngG~C~~~~-~~~y~C~C~~~G~~G~~Ce~~~ 42 (553)
T 1q4g_A 7 YYPCQHQGICVRFG-LDRYQCDCTRTGYSGPNCTIPE 42 (553)
T ss_dssp GCCCCTTCEEEEET-TTEEEEECTTSSEETTTTCEEC
T ss_pred CCCCCCCCCcCCCC-CCceEeeCCCCCcCCCCCCCCc
Confidence 579999999999 6 788999999 999999999864
No 17
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=97.70 E-value=1.9e-05 Score=55.38 Aligned_cols=34 Identities=32% Similarity=0.883 Sum_probs=30.0
Q ss_pred CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~ 36 (143)
|...|.|+|+|+.. .+.+.|.|++||+|.+|+..
T Consensus 18 C~~~C~~~g~C~~~-~~~y~C~C~~G~~G~~C~~~ 51 (114)
T 1aut_L 18 CASLCCGHGTCIDG-IGSFSCDCRSGWEGRFCQRE 51 (114)
T ss_dssp SSSTTTTSEEECCC-SSCCCEEECTTEESTTSCEE
T ss_pred ccccCCCcCCCCCC-CCCcEeeCCCCCcCCCcCcC
Confidence 55569999999988 78899999999999999863
No 18
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A
Probab=97.66 E-value=2.7e-05 Score=55.91 Aligned_cols=33 Identities=36% Similarity=0.728 Sum_probs=27.7
Q ss_pred CCCCCcEEEeCC-CCCC-eeeecCCCcCCCccccc
Q psy3616 5 YCENKGTCVKDA-RGQP-SCRCVGSFIGPHCAQKS 37 (143)
Q Consensus 5 ~C~NgG~C~~~~-~~~~-~C~C~~gy~G~rCe~~~ 37 (143)
||+|||+|+... .+.+ .|.|+.+|+|..||...
T Consensus 2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~ 36 (122)
T 2fd6_A 2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK 36 (122)
T ss_dssp CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEES
T ss_pred CCCCcCCcCCCcccCCCCCccCCCCCCCccccccC
Confidence 899999998762 2455 99999999999999753
No 19
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=97.64 E-value=2.9e-05 Score=57.05 Aligned_cols=33 Identities=30% Similarity=0.633 Sum_probs=30.2
Q ss_pred CCCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616 3 KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~ 36 (143)
.+||.|+|+|+.. .+.+.|.|++||+|.+|+..
T Consensus 53 ~~pC~n~g~C~~~-~~~y~C~C~~G~~G~~C~~~ 85 (146)
T 1x7a_L 53 PNPCLNGGLCKDD-INSYECWCQVGFEGKNCELD 85 (146)
T ss_dssp SCSSCTTCEEEEC-SSCEEEECCSSEESTTTCEE
T ss_pred CCCCCCCCEeECC-CCCEEEecCCCCcCCcCCCC
Confidence 4789999999998 88899999999999999864
No 20
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=97.60 E-value=2.5e-05 Score=56.88 Aligned_cols=32 Identities=28% Similarity=0.714 Sum_probs=29.7
Q ss_pred CCCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616 3 KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35 (143)
Q Consensus 3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~ 35 (143)
.+||.|+|+|+.. .+.+.|.|++||+|.+|+.
T Consensus 52 ~~pC~n~g~C~~~-~g~y~C~C~~G~~G~~C~~ 83 (142)
T 2c4f_L 52 SSPCQNGGSCKDQ-LQSYICFCLPAFEGRNCET 83 (142)
T ss_dssp GCCCCTTCEEEEE-TTEEEEECCTTEESTTSCE
T ss_pred CCCcCCCCEEeCC-CCCEEeeCCCCccCCcccc
Confidence 3789999999998 8889999999999999996
No 21
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=97.56 E-value=2.1e-05 Score=69.94 Aligned_cols=35 Identities=29% Similarity=0.773 Sum_probs=30.3
Q ss_pred CCCCCCCcEEEeCCCCCCeeeec-CCCcCCCccccc
Q psy3616 3 KGYCENKGTCVKDARGQPSCRCV-GSFIGPHCAQKS 37 (143)
Q Consensus 3 ~~~C~NgG~C~~~~~~~~~C~C~-~gy~G~rCe~~~ 37 (143)
.+||+|||+|.....+.+.|.|+ .||+|.+||...
T Consensus 6 s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~~ 41 (587)
T 3nt1_A 6 SNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPE 41 (587)
T ss_dssp TCCCCTTCEEEEEETTEEEEECTTSSEETTTTCEEC
T ss_pred CCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCCch
Confidence 57999999999642478999999 999999999853
No 22
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Probab=97.47 E-value=7.8e-05 Score=55.20 Aligned_cols=33 Identities=36% Similarity=0.728 Sum_probs=27.0
Q ss_pred CCCCCcEEEeCC-CCCC-eeeecCCCcCCCccccc
Q psy3616 5 YCENKGTCVKDA-RGQP-SCRCVGSFIGPHCAQKS 37 (143)
Q Consensus 5 ~C~NgG~C~~~~-~~~~-~C~C~~gy~G~rCe~~~ 37 (143)
||+|||+|+... .+.+ .|.|+.||.|++|+...
T Consensus 14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~ 48 (145)
T 2i9a_A 14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK 48 (145)
T ss_dssp CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEES
T ss_pred CCCCCCCcCCCccccCCccccCCCCCCCCceeccc
Confidence 899999997651 2334 89999999999999754
No 23
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=97.40 E-value=9.5e-05 Score=52.97 Aligned_cols=32 Identities=25% Similarity=0.688 Sum_probs=22.5
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~ 36 (143)
++|.|+|+|+.. .+.+.|.|++||+|++|+..
T Consensus 89 ~~C~~~g~C~~~-~g~~~C~C~~G~~G~~C~~~ 120 (135)
T 2vj3_A 89 SPCLHNGRCLDK-INEFQCECPTGFTGHLCQVD 120 (135)
T ss_dssp CCSTTTCEEEEC-SSCEEEECCTTEESSSSCEE
T ss_pred CCcCCCCEeECC-CCCeEEECCCCCcCCccCcc
Confidence 567777777766 66677777777777777653
No 24
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=97.35 E-value=0.00013 Score=52.28 Aligned_cols=31 Identities=32% Similarity=0.977 Sum_probs=28.8
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~ 35 (143)
++|.|+|+|+.. .+.+.|.|++||+|.+|+.
T Consensus 13 ~~C~~~g~C~~~-~g~~~C~C~~Gy~G~~C~~ 43 (135)
T 2vj3_A 13 NPCEHAGKCINT-LGSFECQCLQGYTGPRCEI 43 (135)
T ss_dssp CSSSTTCEEEEC-SSSEEEECCTTEESTTSCE
T ss_pred CCCCCCCEeECC-CCCEEEECCCCCcCCcccc
Confidence 789999999998 8889999999999999985
No 25
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=97.35 E-value=2.9e-05 Score=60.23 Aligned_cols=33 Identities=30% Similarity=0.806 Sum_probs=0.0
Q ss_pred CCCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616 3 KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~ 36 (143)
.+||.|+|+|+.. .+.+.|.|++||+|.+|+..
T Consensus 47 ~~pC~ngg~C~n~-~g~y~C~C~~Gf~G~~Ce~~ 79 (195)
T 1nfu_B 47 TSPCQNQGKCKDG-LGEYTCTCLEGFEGKNCELF 79 (195)
T ss_dssp ----------------------------------
T ss_pred CCCCCCCCEeECC-CCCeeEeCCCCceecccccc
Confidence 3689999999988 88899999999999999863
No 26
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=97.35 E-value=0.00017 Score=43.68 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=19.3
Q ss_pred cceeeehhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3616 38 EFAYIAGGIAATVVFLIIIALFVWMICARSERR 70 (143)
Q Consensus 38 ~~~~ia~~i~~~Vl~lilIvllv~~~~~r~rr~ 70 (143)
....|++++++.++++++|++++| +++|+|+.
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~-~~~RRr~~ 40 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIG-LFMRRRHI 40 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHH-HHHHTTTC
T ss_pred CcceEEeehhHHHHHHHHHHHHHH-HHhhhhHh
Confidence 345688888777776666665544 44444433
No 27
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=97.31 E-value=0.00012 Score=52.29 Aligned_cols=34 Identities=38% Similarity=0.873 Sum_probs=27.4
Q ss_pred CCCCCCCcEEEeC-CCCCCeeeecCCCcCCCcccc
Q psy3616 3 KGYCENKGTCVKD-ARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 3 ~~~C~NgG~C~~~-~~~~~~C~C~~gy~G~rCe~~ 36 (143)
.+||.|+|+|+.. ..+.+.|.|++||+|++|+..
T Consensus 5 ~~pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~ 39 (143)
T 4d90_A 5 PNPCENGGICLPGLADGSFSCECPDGFTDPNCSSV 39 (143)
T ss_dssp SCCCGGGCEEEC-----CCEEECCTTCCTTTTCSC
T ss_pred CCcCCCCCEeeCCCCCCCEEeECCCCCCCCCCccC
Confidence 4789999999976 236799999999999999974
No 28
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=97.30 E-value=3.5e-05 Score=55.62 Aligned_cols=32 Identities=31% Similarity=0.865 Sum_probs=0.0
Q ss_pred CCCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616 3 KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35 (143)
Q Consensus 3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~ 35 (143)
.+||.|+|+|+.. .+.+.|.|++||+|.+|+.
T Consensus 47 ~~pC~n~g~C~~~-~~~y~C~C~~G~~G~~C~~ 78 (134)
T 2vh0_B 47 TSPCQNQGKCKDG-LGEYTCTCLEGFEGKNCEL 78 (134)
T ss_dssp ---------------------------------
T ss_pred CCCCCCcCCcccC-CCCEEeeCCCCccCCcccc
Confidence 3689999999988 7889999999999999987
No 29
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=97.28 E-value=0.00018 Score=43.47 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=17.9
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy3616 41 YIAGGIAATVVFLIIIALFVWMICARSERRREPK 74 (143)
Q Consensus 41 ~ia~~i~~~Vl~lilIvllv~~~~~r~rr~kk~k 74 (143)
.|++++++ ++ +++|+.++++++.|||+.+++|
T Consensus 13 ~Ia~~vVG-vl-l~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 13 SIISAVVG-IL-LVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHH-HH-HHHHHHHHHHHHHHHHCSCCCC
T ss_pred chHHHHHH-HH-HHHHHHHHHHhheehhhhhccC
Confidence 35555555 33 4445555666777766655443
No 30
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=97.24 E-value=8.5e-05 Score=59.63 Aligned_cols=30 Identities=23% Similarity=0.660 Sum_probs=28.0
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCcCCCcc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCA 34 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe 34 (143)
+||.|+|+|... .+.+.|.|++||.|.+|+
T Consensus 11 ~pC~~~g~C~~~-~~~~~C~C~~g~~g~~C~ 40 (317)
T 3h5c_B 11 QPCLHNGSCQDS-IWGYTCTCSPGYEGSNCE 40 (317)
T ss_dssp CCCTTTCCCCCC-SSSCCCCCSSSCCSSSSC
T ss_pred CCCCCCCEeECC-CCCeEEECCCCCcCCccc
Confidence 689999999988 788999999999999998
No 31
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=97.23 E-value=0.00022 Score=43.12 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=17.7
Q ss_pred eeeehhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3616 40 AYIAGGIAATVVFLIIIALFVWMICARSERRRE 72 (143)
Q Consensus 40 ~~ia~~i~~~Vl~lilIvllv~~~~~r~rr~kk 72 (143)
..|++++++.++++++|+++ +++++|+|++++
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~-~~~~~RRRr~~~ 41 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLT-FAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHTTCSSC
T ss_pred ceEEEeehHHHHHHHHHHHH-HHHHhhhhhhhh
Confidence 34777776666655555544 445555444443
No 32
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=97.03 E-value=0.00035 Score=58.14 Aligned_cols=33 Identities=36% Similarity=0.840 Sum_probs=29.7
Q ss_pred CCCCCCcEEEeCCCCCCeeeecC-CCcCCCccccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVG-SFIGPHCAQKS 37 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~-gy~G~rCe~~~ 37 (143)
+||.|+|+|... .+.+.|.|+. +|.|++|+...
T Consensus 191 ~pC~n~g~C~~~-~~~~~C~C~~~~~~G~~C~~~~ 224 (410)
T 3asi_A 191 DSCSNQGVCLQQ-WDGFSCDCSMTSFSGPLCNDPG 224 (410)
T ss_dssp TSSSTTCEEEEC-SSSEEEECTTTSEESTTSCEEC
T ss_pred ccCCCCCEecCC-CCCceEeccCCcccCCCCCCCc
Confidence 689999999998 7889999996 99999999643
No 33
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=97.02 E-value=0.00024 Score=50.67 Aligned_cols=32 Identities=34% Similarity=0.690 Sum_probs=27.0
Q ss_pred CCCCCCcEEEeCC------CCCCeeeecCCCcCCCccc
Q psy3616 4 GYCENKGTCVKDA------RGQPSCRCVGSFIGPHCAQ 35 (143)
Q Consensus 4 ~~C~NgG~C~~~~------~~~~~C~C~~gy~G~rCe~ 35 (143)
++|.|+|+|+... .+.+.|.|++||+|.+|+.
T Consensus 58 ~~C~~~g~C~~~~~~~~~~~~~~~C~C~~G~~G~~C~~ 95 (143)
T 4d90_A 58 NPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH 95 (143)
T ss_dssp CCCCTTCEEEECCCEETTEECCEEEECCTTEESTTSCE
T ss_pred CCCCCCCEecCCCccccCCCCCeEeECcCCCcCCCccc
Confidence 5799999999531 3679999999999999984
No 34
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=96.61 E-value=0.00078 Score=44.47 Aligned_cols=30 Identities=30% Similarity=0.917 Sum_probs=26.2
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCc--CCCccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFI--GPHCAQ 35 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~--G~rCe~ 35 (143)
++|.| |+|+.. .+.+.|.|++||. |..|+.
T Consensus 12 ~~C~~-g~C~n~-~g~y~C~C~~Gy~~~g~~C~d 43 (82)
T 1emn_A 12 DVCKH-GQCINT-DGSYRCECPFGYILAGNECVD 43 (82)
T ss_dssp TSCSS-SEECCC-SSCCCEECCTTEEEETTEEEE
T ss_pred CCcCC-CEEEec-CCCEEEECCCCeECCCCccCC
Confidence 68986 899988 8899999999997 888863
No 35
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=96.52 E-value=0.0014 Score=44.10 Aligned_cols=36 Identities=11% Similarity=0.374 Sum_probs=23.0
Q ss_pred CCCccccccceeeehhHHHHHHHHHHHHHHHHHHHH
Q psy3616 30 GPHCAQKSEFAYIAGGIAATVVFLIIIALFVWMICA 65 (143)
Q Consensus 30 G~rCe~~~~~~~ia~~i~~~Vl~lilIvllv~~~~~ 65 (143)
|+.|-.....+.|+++++++++++.++++++|-++.
T Consensus 1 ~~~Cp~~~n~~~Iv~gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 1 GAMGSKGPDILVVLLSVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp CCSSCSSSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556755555566777777777777777766665443
No 36
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=96.49 E-value=0.0012 Score=54.33 Aligned_cols=30 Identities=43% Similarity=1.111 Sum_probs=17.9
Q ss_pred CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35 (143)
Q Consensus 2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~ 35 (143)
|.++|.|+|+|... +.|.|++||+|++|+.
T Consensus 151 C~~~C~~~G~C~~~----~~C~C~~G~~G~~C~~ 180 (324)
T 2ygq_A 151 CPGGCRNGGFCNER----RICECPDGFHGPHCEK 180 (324)
T ss_dssp CSSCCCSSCEECTT----SCEECCTTEESSSSCE
T ss_pred CCCCCCCCCEECCC----CeEECCCCCcCCCCCC
Confidence 55566666666532 5566666666666654
No 37
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=96.40 E-value=0.0017 Score=61.50 Aligned_cols=33 Identities=36% Similarity=0.864 Sum_probs=29.8
Q ss_pred CCCCCCcEEEeCCCCCCeeeec-CCCcCCCccccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCV-GSFIGPHCAQKS 37 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~-~gy~G~rCe~~~ 37 (143)
+||.|+|+|... .+.+.|.|+ ++|+|+.|+...
T Consensus 1023 ~pC~ngG~C~~~-~~~~~C~C~~~g~~G~~C~~~~ 1056 (1245)
T 3qcw_A 1023 DSCSNQGVCLQQ-WDGFSCDCSMTSFSGPLCNDPG 1056 (1245)
T ss_dssp TSSSSSCEEEEE-TTEEEEECTTSSCBSTTSCBCC
T ss_pred CcCCCCCEeCCC-CCCCEEECCCCCCCCCCccCCC
Confidence 689999999988 778999999 699999999764
No 38
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=96.24 E-value=0.0018 Score=46.32 Aligned_cols=27 Identities=30% Similarity=0.835 Sum_probs=24.2
Q ss_pred CCCCCCCCCcEEEeCCCCCCeeeecCCCcCC
Q psy3616 1 VCKGYCENKGTCVKDARGQPSCRCVGSFIGP 31 (143)
Q Consensus 1 ~C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~ 31 (143)
.|.++|.|+|+|+.. +.|.|++||+|.
T Consensus 4 ~C~~~C~~~~~C~~~----~~C~C~~G~~g~ 30 (143)
T 2bou_A 4 GCARWCPQDSSCVNA----TACRCNPGFSSF 30 (143)
T ss_dssp CCCTTCCTTEEESSS----SCEEECTTEECS
T ss_pred CCcCcCCCCCEEcCC----CEEeCCCCCcCc
Confidence 488999999999865 899999999983
No 39
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=96.07 E-value=0.0033 Score=51.58 Aligned_cols=30 Identities=37% Similarity=0.868 Sum_probs=18.1
Q ss_pred CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35 (143)
Q Consensus 2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~ 35 (143)
|..+|.|+|+|... ..|.|++||+|.+|+.
T Consensus 183 C~~~C~~~G~C~~~----~~C~C~~G~~G~~C~~ 212 (324)
T 2ygq_A 183 CTPRCMNGGLCVTP----GFCICPPGFYGVNCDK 212 (324)
T ss_dssp SSSCCCTTCEECSS----CCEECCTTCBTTTTCB
T ss_pred CCCCCCCCCEEcCC----CEEeCCCCccCCCccc
Confidence 45566666776543 4566666666666654
No 40
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*
Probab=95.97 E-value=0.00031 Score=57.00 Aligned_cols=34 Identities=6% Similarity=-0.058 Sum_probs=30.9
Q ss_pred CCCCCCCcEEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616 3 KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKS 37 (143)
Q Consensus 3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~~ 37 (143)
.+||+|+|+|+.. ...++|.|+.||+|++|+...
T Consensus 104 s~pC~ngG~C~~~-~~sy~C~C~~Gf~G~~Ce~~~ 137 (267)
T 4fbr_A 104 SIKSNDGGKTLTG-TTTYNGEGPIGFKSEVTDGDT 137 (267)
T ss_dssp EEECSSTTSEEEE-EEEETTSCCEEEEEEECCCCE
T ss_pred CCCCCCCCEEecC-CccEEeeCCCCccccCCCCCc
Confidence 4689999999998 888999999999999999864
No 41
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=95.89 E-value=0.0035 Score=46.52 Aligned_cols=33 Identities=18% Similarity=0.458 Sum_probs=28.1
Q ss_pred CCCCCcEEEeC-CCCCCee-eecCCCcCCCccccc
Q psy3616 5 YCENKGTCVKD-ARGQPSC-RCVGSFIGPHCAQKS 37 (143)
Q Consensus 5 ~C~NgG~C~~~-~~~~~~C-~C~~gy~G~rCe~~~ 37 (143)
||.|+|+|... ..+..+| .|+.+|+|++||.-.
T Consensus 2 ~C~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce~C~ 36 (162)
T 1klo_A 2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCD 36 (162)
T ss_dssp CSCTTCCEEECSSSCCEEECSCCTTEESTTSCEEC
T ss_pred cCcCcCcccccCCCCCEEeCCCCCCCcCCCCcCCC
Confidence 79999999987 2367899 799999999999743
No 42
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*
Probab=95.81 E-value=0.00032 Score=56.96 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=31.3
Q ss_pred CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKS 37 (143)
Q Consensus 2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~~ 37 (143)
|+.+|.|+|+|+.. .+.+.|.|+.||+|.+||...
T Consensus 36 ~~~~c~ngG~C~~g-~~~y~C~Cp~Gf~G~~Ce~ni 70 (267)
T 4fbr_A 36 LDIKSDDGGKTLKG-TMTYNGEGPIGFRGTLSSANN 70 (267)
T ss_dssp EEEECSSTTSEEEE-EEEETTSCCEEEEEEECSTTE
T ss_pred CCCCcCCCCeecCC-CCCeEEeCCCCcccccccccc
Confidence 45689999999998 888999999999999999754
No 43
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=95.79 E-value=0.0046 Score=44.18 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=27.6
Q ss_pred CCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616 5 YCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35 (143)
Q Consensus 5 ~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~ 35 (143)
+|.|+++|+.. .+.+.|.|++||+|..|+.
T Consensus 54 ~C~~~~~C~n~-~g~y~C~C~~Gy~g~~~~~ 83 (143)
T 2bou_A 54 SCGKFSDCWNT-EGSYDCVCSPGYEPVSGAK 83 (143)
T ss_dssp CCCTTEEEEEC-SSCEEEEECTTEEETTCCS
T ss_pred CCCCCCEEEcC-CCCeEeECCCCcccCcCcc
Confidence 79999999998 8899999999999998765
No 44
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=95.77 E-value=0.0028 Score=47.30 Aligned_cols=31 Identities=19% Similarity=0.485 Sum_probs=26.9
Q ss_pred CCCCCCCcEEEeCCCCCCeeeecCCCcCC---Cccc
Q psy3616 3 KGYCENKGTCVKDARGQPSCRCVGSFIGP---HCAQ 35 (143)
Q Consensus 3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~---rCe~ 35 (143)
.+||.|+ +|+.. .+.++|.|++||+|. +|+.
T Consensus 10 ~~pC~ng-~C~~~-~g~~~C~C~~G~~g~~~~~C~~ 43 (186)
T 1z1y_A 10 DTICXNG-QLVQM-SNHFXCMCNEGLVHLSENTCEE 43 (186)
T ss_dssp TCCCBTE-EEEEC-SSCEEEEECTTEEEEETTEEEE
T ss_pred CCCCCCC-EeECC-CCCeEeECCCCCccCCCCccCC
Confidence 5799975 99998 788999999999988 7863
No 45
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}
Probab=95.77 E-value=0.0017 Score=43.22 Aligned_cols=28 Identities=21% Similarity=0.693 Sum_probs=24.9
Q ss_pred CCCCcEEEeCCCCCCeeeecCCCc----CCCccc
Q psy3616 6 CENKGTCVKDARGQPSCRCVGSFI----GPHCAQ 35 (143)
Q Consensus 6 C~NgG~C~~~~~~~~~C~C~~gy~----G~rCe~ 35 (143)
| |+|+|+.. .+.+.|.|++||+ |..|+.
T Consensus 13 C-~~~~C~n~-~g~y~C~C~~G~~~~~~g~~C~d 44 (87)
T 1z6c_A 13 C-GTAVCKNI-PGDFECECPEGYRYNLKSKSCED 44 (87)
T ss_dssp B-TTSSCCCB-TTBCCCSSSTTCEEETTTTEEEC
T ss_pred C-CCCEeECC-CCCEEEECCCCceECCCCCcCCC
Confidence 8 78999988 8899999999999 888863
No 46
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=95.76 E-value=0.005 Score=58.24 Aligned_cols=31 Identities=26% Similarity=0.799 Sum_probs=28.7
Q ss_pred CCCCCCcEEEeCCCCCCeeeec-CCCcCCCccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCV-GSFIGPHCAQ 35 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~-~gy~G~rCe~ 35 (143)
+||.|+|+|... ...+.|.|+ .+|.|+.|+.
T Consensus 625 ~pC~ngg~C~~~-~~~~~C~C~~~g~~G~~C~~ 656 (1245)
T 3qcw_A 625 NPCKNNGMCRDG-WNRYVCDCSGTGYLGRSCER 656 (1245)
T ss_dssp CCCCTTCEEEEC-SSSEEEECTTTTEESTTSCE
T ss_pred cCCCCCCEEeCC-CCCeEEECCCCCcccccCcc
Confidence 689999999988 788999999 7999999986
No 47
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.75 E-value=0.0015 Score=56.01 Aligned_cols=29 Identities=31% Similarity=0.880 Sum_probs=24.1
Q ss_pred CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35 (143)
Q Consensus 2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~ 35 (143)
|..+|.| |+|... ..|.|++||+|.+|+.
T Consensus 395 C~~~C~n-G~C~~~----~~C~C~~G~~G~~C~~ 423 (463)
T 2wg3_C 395 CSRLCRN-GYCTPT----GKCCCSPGWEGDFCRT 423 (463)
T ss_dssp HHHHCCS-EEECTT----SCEEECTTEESTTSCE
T ss_pred ccCCCCC-CccCCC----CeECCCCCcCCCcCCc
Confidence 5667997 899855 5899999999999974
No 48
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Probab=95.74 E-value=0.0038 Score=44.90 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=25.1
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCcCCCcc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCA 34 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe 34 (143)
+||.| |+|+.. .+++.|.|++||+|..|.
T Consensus 10 ~pC~n-g~C~n~-~g~y~C~C~~G~~g~~~~ 38 (147)
T 2w86_A 10 SPCIN-GVCKNS-PGSFICECSSESTLDPTK 38 (147)
T ss_dssp CCSBT-SEEEEE-TTEEEEECCTTEEECTTS
T ss_pred CCCCC-CEeECC-CCCEEeECCCCcccCCCC
Confidence 68997 699999 889999999999987543
No 49
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=95.73 E-value=0.0027 Score=47.36 Aligned_cols=31 Identities=16% Similarity=0.522 Sum_probs=26.9
Q ss_pred CCCCCCCcEEEeCCC-----CCCeeeecCCCcCCCcc
Q psy3616 3 KGYCENKGTCVKDAR-----GQPSCRCVGSFIGPHCA 34 (143)
Q Consensus 3 ~~~C~NgG~C~~~~~-----~~~~C~C~~gy~G~rCe 34 (143)
.++|.|+|+|+.. . +.+.|.|++||+|..|+
T Consensus 53 ~~~C~~~~~C~~~-~~~~~~g~y~C~C~~G~~g~~~~ 88 (186)
T 1z1y_A 53 GXACGEFGQCIEN-PDPAQVNMYXCGCIEGYTLXEDT 88 (186)
T ss_dssp TSEEETTEEEEEC-SSTTSSCSEEEEECTTEEEETTE
T ss_pred CCCCCCCCEeecC-CCCcCCCCEECCCCCCCccCCCC
Confidence 3679999999998 5 89999999999998653
No 50
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=95.66 E-value=0.0062 Score=39.99 Aligned_cols=28 Identities=32% Similarity=0.567 Sum_probs=24.4
Q ss_pred CCCCCCCcEEEeCCCCCCeeeecCCCcCCC
Q psy3616 3 KGYCENKGTCVKDARGQPSCRCVGSFIGPH 32 (143)
Q Consensus 3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~r 32 (143)
.++|.| |+|+.. .+.+.|.|++||.|..
T Consensus 50 ~~~C~~-~~C~n~-~g~y~C~C~~G~~g~~ 77 (82)
T 1emn_A 50 GNPCGN-GTCKNV-IGGFECTCEEGFEPGP 77 (82)
T ss_dssp CCTTSS-SCEEEC-SSSEEECCSSSSCCCS
T ss_pred CCCCCC-CEeECC-CCCEEeECCCCeEeCC
Confidence 368987 699999 8899999999999864
No 51
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=95.33 E-value=0.0029 Score=54.39 Aligned_cols=29 Identities=31% Similarity=0.768 Sum_probs=0.0
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~ 36 (143)
++|.|||+|... . .|.|++||+|..|+..
T Consensus 371 ~~C~ngg~C~~~-~---~C~C~~G~~G~~Ce~c 399 (426)
T 3zyj_B 371 LHCQNGGTCHNN-V---RCLCPAAYTGILCEKL 399 (426)
T ss_dssp ---------------------------------
T ss_pred ccCCCCCCcCCC-C---CCcCCCCCcCCCCcCC
Confidence 589999999977 3 9999999999999874
No 52
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=95.17 E-value=0.0087 Score=50.85 Aligned_cols=28 Identities=32% Similarity=0.873 Sum_probs=25.0
Q ss_pred CCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616 5 YCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35 (143)
Q Consensus 5 ~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~ 35 (143)
+|.|+|+|.. ....|.|++||+|++|+.
T Consensus 204 ~C~~~G~C~~---~~g~C~C~~G~~G~~Ce~ 231 (423)
T 2gy5_A 204 ACMNNGVCHE---DTGECICPPGFMGRTCEK 231 (423)
T ss_dssp CCCTTCEECT---TTCCEECCTTEESTTSCE
T ss_pred CCCCCCEEEC---CCCcEeCCCCccCCCccc
Confidence 8999999985 347999999999999996
No 53
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=95.15 E-value=0.0061 Score=40.24 Aligned_cols=29 Identities=28% Similarity=0.803 Sum_probs=24.6
Q ss_pred CCCCCcEEEeCCCCCCeeeecCCCc-----CCCccc
Q psy3616 5 YCENKGTCVKDARGQPSCRCVGSFI-----GPHCAQ 35 (143)
Q Consensus 5 ~C~NgG~C~~~~~~~~~C~C~~gy~-----G~rCe~ 35 (143)
+|.| |+|+.. .+.+.|.|++||. |..|+.
T Consensus 12 ~C~~-g~C~n~-~g~y~C~C~~Gy~~~~~~g~~C~d 45 (86)
T 1lmj_A 12 LCGR-GQCVNT-PGDFECKCDEGYESGFMMMKNCMD 45 (86)
T ss_dssp TTTT-SCEEEE-TTEEEECCCSSEEECTTTSSSEEE
T ss_pred CCCC-CEEECC-CCCEEeeCCCCcCccCCCCCccCC
Confidence 4976 599999 8899999999998 777863
No 54
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=95.10 E-value=0.014 Score=36.55 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=17.7
Q ss_pred eeeehhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3616 40 AYIAGGIAATVVFLIIIALFVWMICARSERRR 71 (143)
Q Consensus 40 ~~ia~~i~~~Vl~lilIvllv~~~~~r~rr~k 71 (143)
+.|.+++.+.++++++++++.|-+-+.+|+++
T Consensus 10 WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCCc
Confidence 44555555566666666666665555444443
No 55
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=95.04 E-value=0.012 Score=52.86 Aligned_cols=32 Identities=31% Similarity=0.653 Sum_probs=27.1
Q ss_pred CCCCCCCcEEEeCCCCCCee-eecCCCcC--CCcc
Q psy3616 3 KGYCENKGTCVKDARGQPSC-RCVGSFIG--PHCA 34 (143)
Q Consensus 3 ~~~C~NgG~C~~~~~~~~~C-~C~~gy~G--~rCe 34 (143)
.+||.|+|+|+....+.++| .|++||+| .+|+
T Consensus 8 ~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~Ce 42 (634)
T 1yo8_A 8 SNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE 42 (634)
T ss_dssp GCCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCC
T ss_pred CCCCCCCCEEecCCCCCeECCcCCCccCCCCCCcc
Confidence 47999999999983345999 99999999 6776
No 56
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=94.90 E-value=0.012 Score=42.92 Aligned_cols=30 Identities=30% Similarity=0.690 Sum_probs=27.0
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCc----CCCccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFI----GPHCAQ 35 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~----G~rCe~ 35 (143)
+||. +|+|+.. .++++|.|++||+ |.+|+.
T Consensus 10 ~~C~-~~~C~n~-~gsy~C~C~~Gy~~~~~g~~C~d 43 (162)
T 1uzk_A 10 TTCI-SGNCVNT-PGSYICDCPPDFELNPTRVGCVD 43 (162)
T ss_dssp TSSB-TSEEEEE-TTEEEEECCTTCEECTTSSBEEC
T ss_pred CCCC-CCEeECC-CCCEEEeCCCCCeECCCCCcccC
Confidence 6897 5899999 8899999999998 899984
No 57
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=94.60 E-value=0.023 Score=48.24 Aligned_cols=31 Identities=19% Similarity=0.564 Sum_probs=26.0
Q ss_pred CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35 (143)
Q Consensus 2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~ 35 (143)
|.++|.|+|+|. .+.+.|.|++||+|.+|+.
T Consensus 248 ~~~~C~~~g~C~---~~~~~C~C~~G~~G~~C~~ 278 (423)
T 2gy5_A 248 GQEGCKSYVFCL---PDPYGCSCATGWKGLQCNE 278 (423)
T ss_dssp STTTTTTCCEEE---TTTTEEECCBTCBSGGGCB
T ss_pred CCCCCCCCCEEC---CCCCeEEeCCCcccccccC
Confidence 346788889995 4568999999999999986
No 58
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=94.32 E-value=0.019 Score=51.50 Aligned_cols=31 Identities=19% Similarity=0.582 Sum_probs=28.0
Q ss_pred CCCCCCcEEEeCCC----CCCeeeecCCCcC--CCccc
Q psy3616 4 GYCENKGTCVKDAR----GQPSCRCVGSFIG--PHCAQ 35 (143)
Q Consensus 4 ~~C~NgG~C~~~~~----~~~~C~C~~gy~G--~rCe~ 35 (143)
++|.|+++|+.. . +.+.|.|+.||+| .+|+.
T Consensus 110 ~pC~~~~~Cvnt-~~~~~GsY~C~C~~Gy~GdG~~Ce~ 146 (634)
T 1yo8_A 110 HNCHKHAECIYL-GHFSDPMYKCECQTGYAGDGLICGE 146 (634)
T ss_dssp CCCCTTEEEEEC-CTTCSSSEEEEECTTEEESSSSEEE
T ss_pred cccccCcccccc-ccccccceeeeccCCccccCccccc
Confidence 589999999998 5 8999999999998 78985
No 59
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=94.31 E-value=0.035 Score=33.03 Aligned_cols=38 Identities=11% Similarity=0.342 Sum_probs=23.1
Q ss_pred ccccccceeeehhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3616 33 CAQKSEFAYIAGGIAATVVFLIIIALFVWMICARSERR 70 (143)
Q Consensus 33 Ce~~~~~~~ia~~i~~~Vl~lilIvllv~~~~~r~rr~ 70 (143)
|-.+.+...|+++++++++++.++++++|-++.+-+-|
T Consensus 3 Cp~~~n~~~Iv~gvi~~ivliGl~lLliwk~~~~i~Dr 40 (43)
T 2k9j_B 3 SPKGPDILVVLLSVMGAILLIGLAALLIWKLLITIHDR 40 (43)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEeehHHHHHHHHHHHHHHHHHHHHHHHheehh
Confidence 43333444566667777777777777777666554433
No 60
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=94.24 E-value=0.019 Score=41.35 Aligned_cols=32 Identities=34% Similarity=0.759 Sum_probs=27.2
Q ss_pred CCCCCc---EEEeCCCC-CCeeeecCCCc----CCCccccc
Q psy3616 5 YCENKG---TCVKDARG-QPSCRCVGSFI----GPHCAQKS 37 (143)
Q Consensus 5 ~C~NgG---~C~~~~~~-~~~C~C~~gy~----G~rCe~~~ 37 (143)
+|.|++ +|+.. .+ .+.|.|++||+ |.+|+...
T Consensus 92 ~~~~~~C~~~C~~~-~g~~y~C~C~~Gy~l~~dG~~C~~~~ 131 (142)
T 2c4f_L 92 VNENGGCEQYCSDH-TGTKRSCRCHEGYSLLADGVSCTPTV 131 (142)
T ss_dssp TTGGGGCSSEEECC-TTSCCEEECCTTEEECTTSSCEEESS
T ss_pred cCCCCCccCEeECC-CCCCEEEECCCCceECCCCCCCCCCC
Confidence 566777 99988 77 89999999999 99998753
No 61
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=94.24 E-value=0.025 Score=33.66 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=20.9
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCcC
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFIG 30 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G 30 (143)
.+|. ++|+.. .+++.|.|+.||.+
T Consensus 20 ~~C~--~~C~n~-~Gsy~C~C~~Gy~~ 43 (53)
T 1apq_A 20 PQCQ--HLCHNY-VGGYFCSCRPGYEL 43 (53)
T ss_dssp CTTS--SEEEEE-TTEEEEECSTTCEE
T ss_pred CCCC--CEeECC-CCCeEEECCCCCeE
Confidence 5787 499999 89999999999984
No 62
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.05 E-value=0.023 Score=46.87 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=26.6
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCc---CCCccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFI---GPHCAQ 35 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~---G~rCe~ 35 (143)
++|.++++|... .+++.|.|++||. |..|+.
T Consensus 6 ~~~~c~~~C~~~-~~~y~C~C~~G~~~~~~~~C~d 39 (400)
T 3p5b_L 6 NNGGCSHVCNDL-KIGYECLCPDGFQLVAQRRCED 39 (400)
T ss_dssp TGGGCSSEEEEC-SSSEEEECCTTEEECSSSCEEE
T ss_pred CCCCCCCEeECC-CCCeEEECCCCCCcCCCCcccC
Confidence 468888999998 8889999999998 888864
No 63
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=93.95 E-value=0.062 Score=32.20 Aligned_cols=32 Identities=25% Similarity=0.184 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3616 45 GIAATVVFLIIIALFVWMICARSERRREPKKL 76 (143)
Q Consensus 45 ~i~~~Vl~lilIvllv~~~~~r~rr~kk~k~~ 76 (143)
+|++.|+.-+++++++....+-..|||+++++
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence 35666666555555666889999999888764
No 64
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=93.86 E-value=0.078 Score=31.80 Aligned_cols=33 Identities=33% Similarity=0.198 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3616 44 GGIAATVVFLIIIALFVWMICARSERRREPKKL 76 (143)
Q Consensus 44 ~~i~~~Vl~lilIvllv~~~~~r~rr~kk~k~~ 76 (143)
.+|++.|+.-+++++++....+-..|||+++++
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred ceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 346677776677777788888999989888765
No 65
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=93.63 E-value=0.031 Score=45.67 Aligned_cols=31 Identities=26% Similarity=0.683 Sum_probs=27.9
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCc--CCCccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFI--GPHCAQ 35 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~--G~rCe~ 35 (143)
.+|..++.|++. .+++.|.|..||. |..|..
T Consensus 13 ~~C~~~a~C~Nt-~Gsy~C~C~~Gy~GnG~~C~d 45 (285)
T 1gl4_A 13 HQCSVHAECRDY-ATGFCCRCVANYTGNGRQCVA 45 (285)
T ss_dssp GGSCTTEEEEEC-SSCEEEEECTTEEECSSSEEE
T ss_pred CCCCCCCEeEcC-CCCeEEEcCCCCCCCCCcCCC
Confidence 579988999999 9999999999998 778974
No 66
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=93.40 E-value=0.023 Score=39.32 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.4
Q ss_pred EEEeCCCCCCeeeecCCCcC---CCccc
Q psy3616 11 TCVKDARGQPSCRCVGSFIG---PHCAQ 35 (143)
Q Consensus 11 ~C~~~~~~~~~C~C~~gy~G---~rCe~ 35 (143)
+|+.. .+.+.|.|++||.| ..|+.
T Consensus 42 ~C~n~-~g~y~C~C~~Gy~g~~g~~C~d 68 (107)
T 2w2n_E 42 VCNDL-KIGYECLCPDGFQLVAQRRCED 68 (107)
T ss_dssp EEECC-SBSCEEECCTTCEEETTTEEEC
T ss_pred EeEeC-CCCeEEECCCCccccCCCcccc
Confidence 89988 88999999999998 78884
No 67
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=93.10 E-value=0.017 Score=52.24 Aligned_cols=32 Identities=25% Similarity=0.585 Sum_probs=26.2
Q ss_pred CCCCCCcEEEeCCCCCCe---eeecCCCcCCCcccc
Q psy3616 4 GYCENKGTCVKDARGQPS---CRCVGSFIGPHCAQK 36 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~---C~C~~gy~G~rCe~~ 36 (143)
+||.|+++|... .+.+. |.|.+||+|.+|+..
T Consensus 440 ~pc~n~~~C~~g-~G~~~~G~C~C~~Gy~G~~Ce~~ 474 (690)
T 3fcs_B 440 QAEPNSHRCNNG-NGTFECGVCRCGPGWLGSQCECS 474 (690)
T ss_dssp TCCTTCTTTTTT-SEEEETTEEEECTTCCSSSSCCS
T ss_pred CCCCCCCcccCC-CCeEeCCceEeCCCccCCceeec
Confidence 578999999754 55555 999999999999865
No 68
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=93.01 E-value=0.11 Score=33.88 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy3616 46 IAATVVFLIIIALFVWMICARSERRREPKKLVA 78 (143)
Q Consensus 46 i~~~Vl~lilIvllv~~~~~r~rr~kk~k~~~~ 78 (143)
++|.++.+++++.+.+++|.|.++|+++.+.++
T Consensus 13 vlGg~~~lll~~glcI~ccvkcrhRrrqAeRMS 45 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSVRSRHRRRQAERMS 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSSCTTSS
T ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444444444444444455665555555544444
No 69
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=93.00 E-value=0.039 Score=32.81 Aligned_cols=26 Identities=19% Similarity=0.547 Sum_probs=12.5
Q ss_pred cceeeehhHHHHHHHHHHHHHHHHHH
Q psy3616 38 EFAYIAGGIAATVVFLIIIALFVWMI 63 (143)
Q Consensus 38 ~~~~ia~~i~~~Vl~lilIvllv~~~ 63 (143)
..+.|.+++.+.++++.+++++.|-+
T Consensus 9 p~wiIi~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445555555555555555544533
No 70
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=92.99 E-value=0.056 Score=49.92 Aligned_cols=34 Identities=26% Similarity=0.599 Sum_probs=30.3
Q ss_pred CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKS 37 (143)
Q Consensus 2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~~ 37 (143)
|. ||.|+|+|... .....|.|+++|.|..|+...
T Consensus 502 C~-PC~ngg~~~l~-g~~C~C~C~~g~~G~~Ce~~~ 535 (913)
T 3t5o_A 502 CA-PCPNNGRPTLS-GTECLCVCQSGTYGENCEKQS 535 (913)
T ss_dssp SC-CBTTTBEEEEE-TTEEEEECCTTBCSTTSCCBC
T ss_pred CC-CCCCCCEeecC-CCceEEEccCCccccCccCcc
Confidence 55 99999999988 778899999999999999854
No 71
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=92.61 E-value=0.075 Score=34.82 Aligned_cols=25 Identities=24% Similarity=0.599 Sum_probs=21.8
Q ss_pred CCCCcEEEeCCCCCCeeeecCCCcCCC
Q psy3616 6 CENKGTCVKDARGQPSCRCVGSFIGPH 32 (143)
Q Consensus 6 C~NgG~C~~~~~~~~~C~C~~gy~G~r 32 (143)
|. +|+|+.. .+++.|.|++||+|..
T Consensus 56 C~-~~~C~n~-~g~y~C~C~~G~~~~~ 80 (86)
T 1lmj_A 56 CR-GGVCHNT-EGSYRCECPPGHQLSP 80 (86)
T ss_dssp TT-TSEEEEE-TTEEEEESCTTSCCCS
T ss_pred CC-CCEeEcC-CCCEEEECcCCcccCC
Confidence 66 5899999 8999999999999854
No 72
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=92.61 E-value=0.099 Score=32.65 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=15.5
Q ss_pred eeeehhHHHHHHHHHHHHHHHHHHHHHh
Q psy3616 40 AYIAGGIAATVVFLIIIALFVWMICARS 67 (143)
Q Consensus 40 ~~ia~~i~~~Vl~lilIvllv~~~~~r~ 67 (143)
+.|.+++.+.++++.++++++|-+-+.+
T Consensus 13 wiIi~svl~GLllL~li~~~LwK~GFFk 40 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 4455555555555666666666554443
No 73
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=92.59 E-value=0.04 Score=39.26 Aligned_cols=29 Identities=21% Similarity=0.749 Sum_probs=24.7
Q ss_pred CCCCCcEEEeCCCCCCeeeecCCCc----CCCcccc
Q psy3616 5 YCENKGTCVKDARGQPSCRCVGSFI----GPHCAQK 36 (143)
Q Consensus 5 ~C~NgG~C~~~~~~~~~C~C~~gy~----G~rCe~~ 36 (143)
+|.+ +|+.. .+.+.|.|++||+ |.+|+..
T Consensus 90 ~C~~--~C~~~-~g~y~C~C~~Gy~l~~~g~~C~~~ 122 (134)
T 2vh0_B 90 DCDQ--FCHEE-QNSVVCSCARGYTLADNGKACIPT 122 (134)
T ss_dssp GCSS--EEEEE-TTEEEEECCTTEEECTTSSCEEES
T ss_pred CCCC--EeECC-CCCEEEECCCCcEECCCCCccCcC
Confidence 4554 99988 8899999999999 9999864
No 74
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=92.48 E-value=0.062 Score=41.88 Aligned_cols=28 Identities=32% Similarity=0.735 Sum_probs=24.1
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~ 36 (143)
..|.|+|+|.. ..|.|.+||+|.+||-.
T Consensus 96 ~~Csg~G~C~~-----g~C~C~~G~~G~~Cec~ 123 (217)
T 2p28_B 96 SLCHGKGFLEC-----GICRCDTGYIGKNCECQ 123 (217)
T ss_dssp CTTTTSEEEET-----TEEEECTTEESTTSCEE
T ss_pred CccCCCceEEC-----CEEECCCCccCCccccc
Confidence 46889999983 48999999999999954
No 75
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=92.30 E-value=0.044 Score=42.12 Aligned_cols=30 Identities=20% Similarity=0.729 Sum_probs=25.7
Q ss_pred CCCCCcEEEeCCCCCCeeeecCCCc----CCCccccc
Q psy3616 5 YCENKGTCVKDARGQPSCRCVGSFI----GPHCAQKS 37 (143)
Q Consensus 5 ~C~NgG~C~~~~~~~~~C~C~~gy~----G~rCe~~~ 37 (143)
+|.+ +|+.. .+.+.|.|++||+ |.+|+...
T Consensus 90 ~C~~--~C~n~-~gsy~C~C~~Gy~l~~dG~~C~~~~ 123 (195)
T 1nfu_B 90 DCDQ--FCHEE-QNSVVCSCARGYTLADNGKACIPTG 123 (195)
T ss_dssp GCSS--EEEEE-TTEEEEECCTTEEECTTSSCEEESS
T ss_pred CCCC--EeECC-CCCeEEECCCCceeCCCCCccccCC
Confidence 5664 99988 8899999999999 99998753
No 76
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=92.25 E-value=0.071 Score=36.77 Aligned_cols=25 Identities=20% Similarity=0.606 Sum_probs=21.5
Q ss_pred EEEeCCCCCCeeeecCCCc----CCCcccc
Q psy3616 11 TCVKDARGQPSCRCVGSFI----GPHCAQK 36 (143)
Q Consensus 11 ~C~~~~~~~~~C~C~~gy~----G~rCe~~ 36 (143)
+|+.. .+.+.|.|+.||+ |..|+..
T Consensus 67 ~C~n~-~g~y~C~C~~G~~~~~~g~~C~~~ 95 (114)
T 1aut_L 67 YCLEE-VGWRRCSCAPGYKLGDDLLQCHPA 95 (114)
T ss_dssp EEEEC-SSSEEEECCTTEEECTTSSCEEEC
T ss_pred EeECC-CCCEEeECCCCeeECCCCCccCcC
Confidence 99998 8899999999999 5677653
No 77
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=92.08 E-value=0.093 Score=47.40 Aligned_cols=27 Identities=30% Similarity=0.715 Sum_probs=23.7
Q ss_pred CCCCCCcEEEeCCCCCCeeee-cCCCcCCCccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRC-VGSFIGPHCAQ 35 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C-~~gy~G~rCe~ 35 (143)
.+|.|+|+|.. ..|.| .+||+|++|+.
T Consensus 573 ~~C~~~G~C~~-----g~C~C~~~Gy~G~~Ce~ 600 (690)
T 3fcs_B 573 LLCSGRGKCEC-----GSCVCIQPGSYGDTCEK 600 (690)
T ss_dssp SBTSSSCEEET-----TEEECCSTTCBSTTSCB
T ss_pred CCCCCCCEEeC-----CEEECCCCCccCCCcCc
Confidence 57999999963 39999 99999999997
No 78
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=92.06 E-value=0.066 Score=37.22 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=22.5
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCcCCCc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFIGPHC 33 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rC 33 (143)
+||.| +|+..+.+.+.|.|++||+|..+
T Consensus 10 ~pC~~--~C~~~~~g~y~C~C~~Gy~g~~~ 37 (118)
T 1dx5_I 10 ANCEY--QCQPLDQTSYLCVCAEGFAPIPH 37 (118)
T ss_dssp CCCSS--EEEECSSSCEEEECCTTEEEETT
T ss_pred CCCCC--CCCCCCCCCEEeECCCCccccCC
Confidence 67884 89877456899999999999854
No 79
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=92.01 E-value=0.03 Score=32.09 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=11.0
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhh
Q psy3616 42 IAGGIAATVVFLIIIALFVWMICARSE 68 (143)
Q Consensus 42 ia~~i~~~Vl~lilIvllv~~~~~r~r 68 (143)
|++++.+ ++ +++|+.++..++.|||
T Consensus 10 IaagVvg-ll-l~vii~l~~~~~iRRr 34 (35)
T 1iij_A 10 IIATVVG-VL-LFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHH-HH-HHHHHTTTTTHHHHHC
T ss_pred eHHHHHH-HH-HHHHHHHHhheEEeec
Confidence 5555544 22 3333333444555544
No 80
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=91.99 E-value=0.079 Score=30.70 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=9.8
Q ss_pred eehhHHHHHHHHHHHHHHHHH
Q psy3616 42 IAGGIAATVVFLIIIALFVWM 62 (143)
Q Consensus 42 ia~~i~~~Vl~lilIvllv~~ 62 (143)
|+..++++++.++++++++++
T Consensus 13 IAGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHHH
Confidence 444444555444444444443
No 81
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=91.85 E-value=0.055 Score=39.89 Aligned_cols=30 Identities=30% Similarity=0.837 Sum_probs=19.0
Q ss_pred CCCCCC-CCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616 2 CKGYCE-NKGTCVKDARGQPSCRCVGSFIGPHCAQ 35 (143)
Q Consensus 2 C~~~C~-NgG~C~~~~~~~~~C~C~~gy~G~rCe~ 35 (143)
|.+.|. ++|.|... +.|.|++||+|.+|+.
T Consensus 68 C~~~C~~~~g~C~~~----~~C~C~~G~~G~~C~~ 98 (169)
T 2vj2_A 68 CRQGCSPKHGSCKLP----GDCRCQYGWQGLYCDK 98 (169)
T ss_dssp CCTTCCTTTEECSST----TCCEECTTEESSSSCE
T ss_pred CCCCCCCCCcccCCC----CeeECCCCCCCCCccc
Confidence 445554 34566543 6777777777777764
No 82
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}
Probab=91.38 E-value=0.14 Score=33.66 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=23.7
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~ 36 (143)
++|. ++|+.. .+++.|.|+ ++.|.+|+..
T Consensus 51 ~~C~--~~C~n~-~g~y~C~C~-g~~G~~~~~~ 79 (87)
T 1z6c_A 51 NMCA--QLCVNY-PGGYTCYCD-GKKGFKLAQD 79 (87)
T ss_dssp SCCS--SEECCC-SSSCCEECC-SSSCCBCCTT
T ss_pred CCCC--CEEEcc-CCCEEEECC-CCcCCcccCC
Confidence 5676 799988 889999998 8888887753
No 83
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=91.38 E-value=0.066 Score=48.74 Aligned_cols=31 Identities=32% Similarity=0.804 Sum_probs=27.5
Q ss_pred CCCCCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616 1 VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 1 ~C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~ 36 (143)
.|...|..+|.|+.. .|.|.+||+|..|+.+
T Consensus 536 ~Cp~~C~ghG~C~~G-----~C~Cd~G~~G~~C~~~ 566 (725)
T 2e26_A 536 GCLDMCSGHGRCVQG-----SCVCDEQWGGLYCDEP 566 (725)
T ss_dssp CSSGGGGGSEEEETT-----EEEECTTEESTTSCEE
T ss_pred CCCcccCCCcEECCC-----CEeeCCCccCCCcCcc
Confidence 488899999999965 8999999999999963
No 84
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=91.16 E-value=0.087 Score=33.99 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=17.3
Q ss_pred CCCCCCcEEEeCCCCCCeee
Q psy3616 4 GYCENKGTCVKDARGQPSCR 23 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~ 23 (143)
.+|.++++|+.. .+++.|.
T Consensus 11 ~~C~~~~~C~Nt-~Gsy~C~ 29 (71)
T 2kl7_A 11 EACKGEMKCINH-YGGYLCL 29 (71)
T ss_dssp CSCTTEEEEEET-TCCEEEE
T ss_pred CCCCCCCEeECC-CCCeEec
Confidence 579988999999 9999999
No 85
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=90.65 E-value=0.056 Score=39.22 Aligned_cols=30 Identities=17% Similarity=0.553 Sum_probs=24.6
Q ss_pred CCCCCcEE-EeCCCCCCeeeecCCCc----CCCccccc
Q psy3616 5 YCENKGTC-VKDARGQPSCRCVGSFI----GPHCAQKS 37 (143)
Q Consensus 5 ~C~NgG~C-~~~~~~~~~C~C~~gy~----G~rCe~~~ 37 (143)
+|.+ +| +.. .+.+.|.|++||+ |.+|+...
T Consensus 94 ~C~~--~C~~n~-~g~y~C~C~~Gy~l~~dG~~C~~~~ 128 (146)
T 1x7a_L 94 RCKQ--FCKTGA-DSKVLCSCTTGYRLAPDQKSCKPAV 128 (146)
T ss_dssp SCSS--BCCCCS-SSCCCCBCCTTEEECTTSSSEEECS
T ss_pred CCcC--CCCCCC-CCCEEeEcCCCcEeCCCCCcCCCCC
Confidence 4554 89 777 7899999999999 99998753
No 86
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...
Probab=90.19 E-value=0.11 Score=31.62 Aligned_cols=30 Identities=23% Similarity=0.779 Sum_probs=23.7
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCc----CCCcccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFI----GPHCAQK 36 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~----G~rCe~~ 36 (143)
+.|. ..|+.. .+++.|.|++||. |..|+..
T Consensus 9 ~~C~--~~C~nt-~Gsy~C~C~~Gy~L~~d~~~C~di 42 (55)
T 2jkh_L 9 GDCD--QFCHEE-QNSVVCSCARGYTLADNGKACIPT 42 (55)
T ss_dssp GGCS--SEEEEE-TTEEEEECCTTEEECTTSSCEEES
T ss_pred CCcC--cEeEcC-CCCeEEeCCCCCEECCCCCeeccC
Confidence 3565 489988 8999999999996 6777653
No 87
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=89.93 E-value=0.1 Score=47.18 Aligned_cols=26 Identities=27% Similarity=0.807 Sum_probs=23.1
Q ss_pred CCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616 5 YCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35 (143)
Q Consensus 5 ~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~ 35 (143)
+|.|+|+|.. ..|.|.+||+|++|+.
T Consensus 567 ~Cs~~G~C~~-----g~C~C~~Gy~G~~Ce~ 592 (687)
T 3k6s_B 567 ECSGRGRCRC-----NVCECHSGYQLPLCQE 592 (687)
T ss_dssp BTSSSCCBCS-----SCBCCSTTCCTTTTCC
T ss_pred CCCCCCcCCC-----CEEECCCCCcCCCCCC
Confidence 6889999974 4799999999999997
No 88
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=89.38 E-value=0.069 Score=43.62 Aligned_cols=24 Identities=29% Similarity=0.735 Sum_probs=0.0
Q ss_pred cEEEeCCCCCCeeeecCCCc----CCCcc
Q psy3616 10 GTCVKDARGQPSCRCVGSFI----GPHCA 34 (143)
Q Consensus 10 G~C~~~~~~~~~C~C~~gy~----G~rCe 34 (143)
++|... .+.+.|.|++||. |..|+
T Consensus 15 ~~C~~~-~g~~~C~C~~G~~l~~~~~~C~ 42 (386)
T 3v65_B 15 QKCQMI-RGAVQCTCHTGYRLTEDGRTCQ 42 (386)
T ss_dssp -----------------------------
T ss_pred CCCcCC-CCCcEeECCCCceECCCCCccC
Confidence 456444 5556666666666 66664
No 89
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=89.33 E-value=0.18 Score=39.19 Aligned_cols=27 Identities=33% Similarity=0.687 Sum_probs=23.4
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCC------CcCCCccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGS------FIGPHCAQ 35 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~g------y~G~rCe~ 35 (143)
.+|.|+|+|+. ..|.|.+| |+|..||.
T Consensus 143 ~~Csg~G~C~~-----g~C~C~~gw~~~~~~~G~~Ce~ 175 (217)
T 2p28_B 143 IICSGLGDCVC-----GQCLCHTSDVPGKLIYGQYCEC 175 (217)
T ss_dssp CBGGGTEEEET-----TEEEECCCCSTTCCEESTTSCE
T ss_pred CCCCCCCEEeC-----CceECCCCCCCcccEECCCccc
Confidence 57999999983 37999999 69999994
No 90
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=88.81 E-value=0.11 Score=36.13 Aligned_cols=32 Identities=31% Similarity=0.881 Sum_probs=22.6
Q ss_pred CCCCCCCC---cEEEeCCCCCCeeeecCCCc---CCCccc
Q psy3616 2 CKGYCENK---GTCVKDARGQPSCRCVGSFI---GPHCAQ 35 (143)
Q Consensus 2 C~~~C~Ng---G~C~~~~~~~~~C~C~~gy~---G~rCe~ 35 (143)
|..+|.++ ++|+. .+.+.|.|++||+ |.+|+.
T Consensus 42 C~~~C~~~~C~~~C~~--~~~y~C~C~~Gy~~~~g~~C~d 79 (118)
T 1dx5_I 42 CQMFCNQTACPADCDP--NTQASCECPEGYILDDGFICTD 79 (118)
T ss_dssp EEECCCSSEEECEECT--TSTTCEECCTTEEEETTTEEEE
T ss_pred cccccCCCCCCCcccC--CCCeEeECCCCccCCCCCcccc
Confidence 33445544 56654 4779999999999 888863
No 91
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=87.71 E-value=0.31 Score=38.58 Aligned_cols=25 Identities=16% Similarity=0.526 Sum_probs=22.2
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCcCC
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFIGP 31 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~ 31 (143)
++|.| +|... .+.+.|.|+.||.|.
T Consensus 52 ~~C~~--~C~~~-~g~~~C~C~~g~~~~ 76 (317)
T 3h5c_B 52 DGCQH--FCLPG-QESYTCSCAQGYRLG 76 (317)
T ss_dssp TSCSS--EEECC-SSSCEEECCTTEECC
T ss_pred CCCcC--ccccC-CCeeEEecccccccc
Confidence 68987 99988 889999999999874
No 92
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=86.68 E-value=0.19 Score=41.01 Aligned_cols=30 Identities=27% Similarity=0.791 Sum_probs=20.3
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCc----CCCcccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFI----GPHCAQK 36 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~----G~rCe~~ 36 (143)
++|.++ |... .+++.|.|++||. |..|+..
T Consensus 51 ~~C~~~--C~~~-~g~~~C~C~~g~~l~~d~~~C~~~ 84 (386)
T 3v65_B 51 GYCSQG--CTNS-EGAFQCWCEAGYELRPDRRSCKAL 84 (386)
T ss_dssp -CCTTE--EC------CCEECCTTEEECTTSSCEEEC
T ss_pred CcccCc--CCCC-CCCCeEEECCCceEcCCCCeECCc
Confidence 578753 9888 8899999999998 8999854
No 93
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=85.14 E-value=0.41 Score=43.24 Aligned_cols=26 Identities=31% Similarity=0.710 Sum_probs=22.8
Q ss_pred CCCCCcEEEeCCCCCCeeeec------CCCcCCCccc
Q psy3616 5 YCENKGTCVKDARGQPSCRCV------GSFIGPHCAQ 35 (143)
Q Consensus 5 ~C~NgG~C~~~~~~~~~C~C~------~gy~G~rCe~ 35 (143)
+|.|+|+|. . ..|.|+ +||+|.+|+.
T Consensus 483 ~Cs~~G~C~-~----G~C~C~~~~~~~~G~~G~~Ce~ 514 (687)
T 3k6s_B 483 ICSGLGDCV-C----GQCLCHTSDVPGKLIYGQYCEC 514 (687)
T ss_dssp GGGSSEEEE-T----TEEEECCCCSTTCCEESTTSCE
T ss_pred cCCCCCEEe-C----CEEEcCCCCCCCCCcccccccc
Confidence 599999999 3 399999 9999999983
No 94
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=84.11 E-value=1.1 Score=25.39 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy3616 48 ATVVFLIIIALFVWMICARSE 68 (143)
Q Consensus 48 ~~Vl~lilIvllv~~~~~r~r 68 (143)
|++++++++++.+.++.+-.|
T Consensus 10 Gvl~LLviV~LgV~LI~f~~k 30 (35)
T 2lk9_A 10 GILVLLIIVILGVPLIIFTIK 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHhcchheEEeee
Confidence 334444444455555555433
No 95
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=84.01 E-value=0.48 Score=27.10 Aligned_cols=8 Identities=38% Similarity=0.833 Sum_probs=3.1
Q ss_pred eehhHHHH
Q psy3616 42 IAGGIAAT 49 (143)
Q Consensus 42 ia~~i~~~ 49 (143)
|++++++.
T Consensus 15 I~~~vv~G 22 (41)
T 2k9y_A 15 VIGGVAVG 22 (41)
T ss_dssp HHHHHHHH
T ss_pred EEeehhHH
Confidence 44443333
No 96
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=83.98 E-value=0.69 Score=40.47 Aligned_cols=34 Identities=18% Similarity=0.437 Sum_probs=27.8
Q ss_pred CCCCCCCCcEEEeCCCCCCeeeecCC--CcCCCccccc
Q psy3616 2 CKGYCENKGTCVKDARGQPSCRCVGS--FIGPHCAQKS 37 (143)
Q Consensus 2 C~~~C~NgG~C~~~~~~~~~C~C~~g--y~G~rCe~~~ 37 (143)
|..||+|||.- .. ...-.|.|+++ -.|+.|+...
T Consensus 356 C~~PC~nn~~~-l~-g~~C~C~C~~~~~t~~~~C~~~~ 391 (540)
T 3nsj_A 356 CSRPCRSGQHK-SS-HDSCQCECQDSKVTNQDCCPRQR 391 (540)
T ss_dssp TTSCCBTTEEE-CS-SCTTCEEESCTTTBCGGGCBSST
T ss_pred hcccccCCCcc-CC-CCceEeeCCCCCCcccccccccC
Confidence 67899999854 33 77889999999 7789999865
No 97
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Probab=83.00 E-value=0.27 Score=41.67 Aligned_cols=31 Identities=26% Similarity=0.867 Sum_probs=25.9
Q ss_pred CCCCCCCCCcEEEeCCCCCCeeeecCCCcCCC--cccc
Q psy3616 1 VCKGYCENKGTCVKDARGQPSCRCVGSFIGPH--CAQK 36 (143)
Q Consensus 1 ~C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~r--Ce~~ 36 (143)
.|.+.|..+|.|.. -.|.|..||.|.. |...
T Consensus 193 ~Cp~~CsGhG~C~~-----g~C~Cd~G~~g~d~~C~~~ 225 (387)
T 2ddu_A 193 PCPSYCSGHGDCIS-----GVCFCDLGYTAAQGTCVSN 225 (387)
T ss_dssp CCGGGGGGSEEEET-----TEEEECTTEEEETTEEEES
T ss_pred cCccccCCCceecC-----CeEEecCCcccCCCccccc
Confidence 38899999999964 3899999999986 7753
No 98
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1
Probab=82.52 E-value=0.23 Score=29.79 Aligned_cols=30 Identities=23% Similarity=0.834 Sum_probs=23.0
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCc----CCCcccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFI----GPHCAQK 36 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~----G~rCe~~ 36 (143)
+.|.. .|+.. .+++.|.|+.||. |..|+..
T Consensus 6 g~C~~--~C~n~-~gs~~C~C~~Gy~L~~d~~tC~di 39 (51)
T 1kig_L 6 GGCDQ--FCREE-RSEVRCSCAHGYVLGDDSKSCVST 39 (51)
T ss_dssp TSSSS--CCCEE-TTEECCCCCTTEEECTTSSCEEEC
T ss_pred CCcCC--EeEcC-CCCeEEeCCCCcEECCCCCccccC
Confidence 45653 58777 8899999999996 6778753
No 99
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=81.83 E-value=0.87 Score=30.17 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=13.7
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhh
Q psy3616 41 YIAGGIAATVVFLIIIALFVWMICARSE 68 (143)
Q Consensus 41 ~ia~~i~~~Vl~lilIvllv~~~~~r~r 68 (143)
.++++++++++.+++|.+++++++....
T Consensus 9 n~~~Iv~gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554445555554444444
No 100
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=81.14 E-value=0.61 Score=39.98 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=22.6
Q ss_pred CCCCCcEEEeC---CCCCCeeeecCCCcCCCcccc
Q psy3616 5 YCENKGTCVKD---ARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 5 ~C~NgG~C~~~---~~~~~~C~C~~gy~G~rCe~~ 36 (143)
+|.++|+|... +.....|.|++||.|.+|+.-
T Consensus 442 ~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C 476 (525)
T 4aqs_A 442 ACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQC 476 (525)
T ss_dssp CCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC-
T ss_pred CCCCCceecCCCcccCCCCEEECCCCCcCCCcccC
Confidence 45666666543 234568999999999999863
No 101
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Probab=79.91 E-value=0.72 Score=27.78 Aligned_cols=30 Identities=37% Similarity=0.895 Sum_probs=22.6
Q ss_pred CCCCCCcEEEeCCCC-CCeeeecCCCc----CCCcccc
Q psy3616 4 GYCENKGTCVKDARG-QPSCRCVGSFI----GPHCAQK 36 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~-~~~C~C~~gy~----G~rCe~~ 36 (143)
+.|. ..|... .+ +++|.|+.||. |..|+..
T Consensus 7 ggC~--~~C~n~-~ggs~~C~C~~Gy~L~~Dg~tC~d~ 41 (53)
T 2bz6_L 7 GGCE--QYCSDH-TGTKRSCRCHEGYSLLADGVSCTPT 41 (53)
T ss_dssp GGCS--SEEEEE-TTTEEEEECCTTEEECTTSSCEEEC
T ss_pred CCcC--CEeEcC-CCCCEEeeCCCCCEECCCCCcccCC
Confidence 3465 368887 66 79999999997 7778753
No 102
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=79.30 E-value=3.4 Score=27.01 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q psy3616 46 IAATVVFLIIIAL 58 (143)
Q Consensus 46 i~~~Vl~lilIvl 58 (143)
++|+++..+++++
T Consensus 18 iGGLifA~vLfi~ 30 (72)
T 2jo1_A 18 IGGLVIAGILFIL 30 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 3444444444433
No 103
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=78.67 E-value=0.76 Score=41.86 Aligned_cols=31 Identities=29% Similarity=0.932 Sum_probs=27.6
Q ss_pred CCCCCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616 1 VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35 (143)
Q Consensus 1 ~C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~ 35 (143)
.|...|..+|.|+.. ..|.|.+||.|..|..
T Consensus 187 ~C~~~C~g~G~C~~~----~~C~C~~g~~g~~C~~ 217 (725)
T 2e26_A 187 QCEEMCYGHGSCING----TKCICDPGYSGPTCKI 217 (725)
T ss_dssp CCGGGGGGSEEEETT----TEEEECTTEESTTSCE
T ss_pred CCccccCCCcEecCC----CeeeccCCcccCcccc
Confidence 388899999999765 6999999999999995
No 104
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=78.19 E-value=2.4 Score=27.40 Aligned_cols=16 Identities=0% Similarity=-0.145 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3616 46 IAATVVFLIIIALFVW 61 (143)
Q Consensus 46 i~~~Vl~lilIvllv~ 61 (143)
++|+++..+++++.++
T Consensus 19 igGLifA~vLfi~GI~ 34 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIA 34 (67)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHH
Confidence 4444444444444333
No 105
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=78.15 E-value=3.2 Score=24.62 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3616 47 AATVVFLIIIALFVWMICARSERRREPKKL 76 (143)
Q Consensus 47 ~~~Vl~lilIvllv~~~~~r~rr~kk~k~~ 76 (143)
+++.++-+++++++.....-.-|||+++++
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR~~~~k 43 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRRQQKIR 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred hHHHHHHHHHHHHHHHHHHhheehhhhhcc
Confidence 344444544445566677888888888753
No 106
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=76.00 E-value=3.2 Score=23.62 Aligned_cols=14 Identities=50% Similarity=0.788 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q psy3616 53 LIIIALFVWMICAR 66 (143)
Q Consensus 53 lilIvllv~~~~~r 66 (143)
++++++++|.+.++
T Consensus 14 alIiaIVVWtiv~i 27 (36)
T 1pi7_A 14 AIIIAIVVWSIVII 27 (36)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444556655443
No 107
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=75.78 E-value=1.3 Score=38.68 Aligned_cols=33 Identities=24% Similarity=0.514 Sum_probs=28.5
Q ss_pred CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~ 36 (143)
|. ||.|+|.-..+ ...-.|.|+.++.|..|+..
T Consensus 451 C~-pC~~~~~~~~~-gt~C~c~C~~g~~G~~c~~~ 483 (537)
T 3ojy_B 451 CA-PCQGNGVPVLK-GSRCDCICPVGSQGLACEVS 483 (537)
T ss_dssp SC-CCSTTCEEEEE-TTEEEEECCTTEETGGGCEE
T ss_pred CC-CCCcCCEEecC-CCceeccCCCCcccccccCC
Confidence 65 99999998887 77788899999999999863
No 108
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=75.25 E-value=1.7 Score=28.56 Aligned_cols=26 Identities=12% Similarity=0.140 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3616 44 GGIAATVVFLIIIALFVWMICARSER 69 (143)
Q Consensus 44 ~~i~~~Vl~lilIvllv~~~~~r~rr 69 (143)
+-++|+++..+++++.++++..+|-|
T Consensus 19 LRigGLifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 19 LRVVGLIVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred heeccchhHHHHHHHHHHHHHcCccc
Confidence 33455555555555544444443333
No 109
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=73.72 E-value=4.9 Score=24.87 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=13.4
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy3616 43 AGGIAATVVFLIIIALFVWMICARSERRREPK 74 (143)
Q Consensus 43 a~~i~~~Vl~lilIvllv~~~~~r~rr~kk~k 74 (143)
.+.+.+++..++++++++ ++.++----||++
T Consensus 10 WiIi~svl~GLLLL~Lii-~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLI-LALWKIGFFKRPL 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHcCcccCCC
Confidence 333444444444444444 3444444444444
No 110
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=72.32 E-value=1.5 Score=35.37 Aligned_cols=26 Identities=35% Similarity=0.786 Sum_probs=20.4
Q ss_pred CCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616 6 CENKGTCVKDARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 6 C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~ 36 (143)
|..+|+|.- ..|.|.+||.|++|+-.
T Consensus 198 C~g~G~~~C-----G~C~C~~g~~G~~CeC~ 223 (280)
T 2p26_A 198 CHGKGFLEC-----GICRCDTGYIGKNCECQ 223 (280)
T ss_dssp GGGSEEEET-----TEEEECTTEESTTSCEE
T ss_pred cCCCCeECC-----CceeCCCCCcCCcceec
Confidence 555577763 37999999999999954
No 111
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=72.08 E-value=1.8 Score=37.92 Aligned_cols=33 Identities=27% Similarity=0.610 Sum_probs=26.2
Q ss_pred CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~ 36 (143)
|. ||.|+|.-... .+.-.|.|..||.|..|+..
T Consensus 469 c~-pC~~~g~~~~~-gt~C~c~C~~G~~G~~C~~~ 501 (554)
T 3ojy_A 469 CG-PCFNNGVPILE-GTSCRCQCRLGSLGAACEQT 501 (554)
T ss_dssp SC-CCTTTCCEEEE-TTEEEECCCSSCCSSSCC--
T ss_pred cc-ccCCCCEEcCC-CCcccccCCCCCCCCCcccC
Confidence 54 99999988665 66778889999999999864
No 112
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=70.66 E-value=2.1 Score=38.84 Aligned_cols=30 Identities=20% Similarity=0.497 Sum_probs=24.0
Q ss_pred CCCCCCc-----EEEeCCCCCCeeeecCCCc---CCCcc
Q psy3616 4 GYCENKG-----TCVKDARGQPSCRCVGSFI---GPHCA 34 (143)
Q Consensus 4 ~~C~NgG-----~C~~~~~~~~~C~C~~gy~---G~rCe 34 (143)
++|.+++ +|... .+++.|.|++||. |..|+
T Consensus 313 ~~C~~~~~~C~~~C~~~-~~~y~C~C~~Gy~l~~g~~C~ 350 (791)
T 3m0c_C 313 NECLDNNGGCSHVCNDL-KIGYECLCPDGFQLVAQRRCE 350 (791)
T ss_dssp CSTTTGGGGCSSEEEEC-SBSEEEECCTTCEEETTTEEE
T ss_pred ccccccccCccccccCC-CCCcccCCCCCCccCCCCccc
Confidence 4677654 89888 7889999999995 77776
No 113
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Probab=70.57 E-value=2.5 Score=25.94 Aligned_cols=29 Identities=24% Similarity=0.700 Sum_probs=21.6
Q ss_pred CCCCCCcEEEeCCC-CCCeeeecCCCc----CCCccc
Q psy3616 4 GYCENKGTCVKDAR-GQPSCRCVGSFI----GPHCAQ 35 (143)
Q Consensus 4 ~~C~NgG~C~~~~~-~~~~C~C~~gy~----G~rCe~ 35 (143)
+.|. ..|... . +++.|.|++||. |..|+.
T Consensus 7 ggC~--~~C~n~-~~gs~~C~C~~Gy~L~~D~~tC~d 40 (59)
T 2wph_E 7 GRCE--QFCKNS-ADNKVVCSCTEGYRLAENQKSCEP 40 (59)
T ss_dssp GGCS--SEEEEC-STTCEEEECCTTEEECTTSSCEEE
T ss_pred CCcC--CEeEeC-CCCCEEeeCCCCcEECCCCCcccC
Confidence 3465 368887 5 689999999985 667765
No 114
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=69.93 E-value=1.6 Score=28.71 Aligned_cols=18 Identities=11% Similarity=-0.038 Sum_probs=15.6
Q ss_pred CCeeeecCCCcCCCcccc
Q psy3616 19 QPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 19 ~~~C~C~~gy~G~rCe~~ 36 (143)
++.|.|.+||+|..|+..
T Consensus 1 sy~C~C~~g~~g~~c~~~ 18 (91)
T 1tpg_A 1 SYQVICRDEKTQMIYQQH 18 (91)
T ss_dssp CCCCCCBCSSSCCBCCSS
T ss_pred CeeeECCCCCcCCeECCC
Confidence 478999999999999754
No 115
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=69.22 E-value=1.9 Score=35.23 Aligned_cols=29 Identities=28% Similarity=0.647 Sum_probs=22.6
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCcCC----Cccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFIGP----HCAQ 35 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~----rCe~ 35 (143)
++|.+ +|... .+++.|.|.+||.+. .|..
T Consensus 47 ~~C~~--~C~n~-~g~~~C~C~~g~~~~~~~~~C~~ 79 (400)
T 3p5b_L 47 DTCSQ--LCVNL-EGGYKCQCEEGFQLDPHTKACKA 79 (400)
T ss_dssp SSCSS--CCBCC-SSSCBCCCCTTCCCCTTTSSCCC
T ss_pred CCCCC--ccCCC-ccceeeeccccccccccccceee
Confidence 46663 78888 889999999999864 5654
No 116
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens}
Probab=69.11 E-value=2.8 Score=36.99 Aligned_cols=33 Identities=27% Similarity=0.738 Sum_probs=26.5
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCcCC--Ccccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFIGP--HCAQK 36 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~--rCe~~ 36 (143)
++|.-++.|+....+.+.|.|+.||.|. .|..-
T Consensus 27 ~~c~~~a~C~~~~~~~~~c~C~~G~ag~G~~c~~D 61 (551)
T 3fby_A 27 SECHEHADCVLERDGSRSCVCAVGWAGNGILCGRD 61 (551)
T ss_dssp CCCCTTEEEEECTTSCEEEEECTTEESSSSSCEEC
T ss_pred CCCCCCCeeEeCCCCCEecCCCCCCCCCCcccCcc
Confidence 5898899999885667899999999874 46643
No 117
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=68.82 E-value=1 Score=30.78 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=0.0
Q ss_pred cEEEeCCCCCCeeeecCCCcCCC
Q psy3616 10 GTCVKDARGQPSCRCVGSFIGPH 32 (143)
Q Consensus 10 G~C~~~~~~~~~C~C~~gy~G~r 32 (143)
++|+.. .+++.|.|++||.|..
T Consensus 80 ~~C~n~-~gsy~C~C~~Gy~~~~ 101 (107)
T 2w2n_E 80 QLCVNL-EGGYKCQCEEGFQLDP 101 (107)
T ss_dssp -----------------------
T ss_pred CeeecC-CCCEEEECCCCceECC
Confidence 689888 8899999999999864
No 118
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=68.15 E-value=3.7 Score=24.05 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=16.8
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy3616 42 IAGGIAATVVFLIIIALFVWMICARSERRREPK 74 (143)
Q Consensus 42 ia~~i~~~Vl~lilIvllv~~~~~r~rr~kk~k 74 (143)
+...+.+++..++++.++++.++......++++
T Consensus 9 ~~~Iv~gvi~~ivliGl~lLliwk~~~~i~Drr 41 (43)
T 2k9j_B 9 ILVVLLSVMGAILLIGLAALLIWKLLITIHDRK 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeehHHHHHHHHHHHHHHHHHHHHHHHheehhh
Confidence 344444555544445555555555554445543
No 119
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=67.00 E-value=1.6 Score=31.78 Aligned_cols=24 Identities=21% Similarity=0.618 Sum_probs=18.4
Q ss_pred EEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616 11 TCVKDARGQPSCRCVGSFIGPHCAQKS 37 (143)
Q Consensus 11 ~C~~~~~~~~~C~C~~gy~G~rCe~~~ 37 (143)
+|... ..+|.|.++|+|++|+.-.
T Consensus 125 ~Cd~~---tG~C~C~~g~~G~~Cd~C~ 148 (162)
T 1klo_A 125 SCNPV---TGQCQCLPHVSGRDCGTCD 148 (162)
T ss_dssp CCCTT---TCCCCBCTTEESTTCCEEC
T ss_pred CCCCC---CCEeECCCCCcCCCCCCCC
Confidence 56432 3689999999999999643
No 120
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=66.33 E-value=11 Score=23.11 Aligned_cols=32 Identities=6% Similarity=0.022 Sum_probs=13.9
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy3616 42 IAGGIAATVVFLIIIALFVWMICARSERRREPK 74 (143)
Q Consensus 42 ia~~i~~~Vl~lilIvllv~~~~~r~rr~kk~k 74 (143)
+.+.+.+++..+++++++ .++.++----||++
T Consensus 12 ~wiIi~svl~GLllL~li-~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTIL-VLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTTTC
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHcCcccCCC
Confidence 333344444444444444 34444444445544
No 121
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Probab=65.70 E-value=2.5 Score=26.86 Aligned_cols=25 Identities=32% Similarity=0.852 Sum_probs=19.7
Q ss_pred EEEeCCCC-CCeeeecCCCc----CCCcccc
Q psy3616 11 TCVKDARG-QPSCRCVGSFI----GPHCAQK 36 (143)
Q Consensus 11 ~C~~~~~~-~~~C~C~~gy~----G~rCe~~ 36 (143)
.|... .+ ++.|.|+.||. |..|...
T Consensus 18 ~C~n~-~g~s~~C~C~~Gy~L~~D~~tC~d~ 47 (69)
T 1kli_L 18 YCSDH-TGTKRSCRCHEGYSLLADGVSCTPT 47 (69)
T ss_dssp EEEEE-TTTEEEEECCTTEEECTTSSCEEEC
T ss_pred EeEcC-CCCCEEEeCCCCCeECCCCCcccCc
Confidence 67777 66 79999999985 6778764
No 122
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=64.43 E-value=1.9 Score=27.95 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=17.4
Q ss_pred eeh-hHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy3616 42 IAG-GIAATVVFLIIIALFVWMICARSERRREPK 74 (143)
Q Consensus 42 ia~-~i~~~Vl~lilIvllv~~~~~r~rr~kk~k 74 (143)
|++ +++++++++.+.+++..-+++|+|+.++..
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrrqAeRMS 45 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQAERMS 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSSCTTSS
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344 456666666666664444555555444433
No 123
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=64.42 E-value=2.5 Score=36.12 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=17.7
Q ss_pred CCCCeeeecCCCcCCCccccc
Q psy3616 17 RGQPSCRCVGSFIGPHCAQKS 37 (143)
Q Consensus 17 ~~~~~C~C~~gy~G~rCe~~~ 37 (143)
.....|.|+.||.|.+||...
T Consensus 276 ~~~g~C~C~~G~~G~~Ce~C~ 296 (525)
T 4aqs_A 276 MVHGHCMCRHNTKGLNCELCM 296 (525)
T ss_dssp CCCCEECCCTTEESSSSCEEC
T ss_pred CcCccccCcCCCcCCCCcCCC
Confidence 456799999999999999743
No 124
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=61.88 E-value=0.68 Score=33.33 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=18.9
Q ss_pred CCCcEEEeCCCC----CCeeeecCCCc-CCCccc
Q psy3616 7 ENKGTCVKDARG----QPSCRCVGSFI-GPHCAQ 35 (143)
Q Consensus 7 ~NgG~C~~~~~~----~~~C~C~~gy~-G~rCe~ 35 (143)
.++++|+.. .+ .+.|.|+.||. |..|+.
T Consensus 59 ~~~~~C~~~-~~~~~~~~~C~C~~G~~~~~~C~~ 91 (162)
T 1uzk_A 59 NGDTACSNE-IGVGVSKASCCCSLGKAWGTPCEM 91 (162)
T ss_dssp -----CEEE-EEEEECHHHHHTTTCCEETTTTEE
T ss_pred CCCCcccCC-cCCcccCceeeCCCCCCcCCCccc
Confidence 357888876 44 79999999998 888874
No 125
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=61.82 E-value=1.4 Score=35.18 Aligned_cols=24 Identities=21% Similarity=0.646 Sum_probs=16.8
Q ss_pred EEEeCCCCCCeeeecCCCc----CCCccc
Q psy3616 11 TCVKDARGQPSCRCVGSFI----GPHCAQ 35 (143)
Q Consensus 11 ~C~~~~~~~~~C~C~~gy~----G~rCe~ 35 (143)
.|... .+++.|.|+.||. |..|..
T Consensus 13 ~C~n~-~g~~~C~C~~g~~l~~d~~~C~~ 40 (349)
T 3v64_C 13 GCTNS-EGAFQCWCEAGYELRPDRRSCKA 40 (349)
T ss_dssp EECCC----CCEECCTTEEECTTSSCEEE
T ss_pred eeecC-CCCeEEECCCCccCCCCCCcccc
Confidence 56666 7899999999986 677865
No 126
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}
Probab=60.18 E-value=3.2 Score=36.12 Aligned_cols=30 Identities=27% Similarity=0.760 Sum_probs=26.2
Q ss_pred CCCCCCcEEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKS 37 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~~ 37 (143)
.-|...|+|... -.|+|..||.++.|+...
T Consensus 454 ~~C~~~GVCNn~----~~CHC~~GwaPP~C~~~~ 483 (510)
T 3g5c_A 454 TICSGNGVCSNE----LKCVCNRHWIGSDCNTYF 483 (510)
T ss_dssp CSGGGTEEEBTT----SCEEECTTEESTTSCEEC
T ss_pred cccCCCCeeCCC----CCcCCCCCCCCCCCCCCC
Confidence 358889999876 789999999999999864
No 127
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=60.01 E-value=2.8 Score=37.06 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=17.2
Q ss_pred EEEeCCCCCCeeeecCCCc---CCCcc
Q psy3616 11 TCVKDARGQPSCRCVGSFI---GPHCA 34 (143)
Q Consensus 11 ~C~~~~~~~~~C~C~~gy~---G~rCe 34 (143)
+|... .+.+.|.|++||. |..|+
T Consensus 307 ~C~~~-~~~~~C~C~~G~~~~~~~~C~ 332 (699)
T 1n7d_A 307 VCNDL-KIGYECLCPDGFQLVAQRRCE 332 (699)
T ss_dssp TCCCC-TTCCCCCCCSSSCCCSSSCCC
T ss_pred CcccC-CCCcEEeCCCCeEcCCCCccc
Confidence 56655 6778888888888 66775
No 128
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=59.56 E-value=15 Score=20.83 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=15.7
Q ss_pred ehhHHHHHHHHHHHH-HHHHHHHHHhhh
Q psy3616 43 AGGIAATVVFLIIIA-LFVWMICARSER 69 (143)
Q Consensus 43 a~~i~~~Vl~lilIv-llv~~~~~r~rr 69 (143)
...|+++|+..++.+ +++.+.++..||
T Consensus 10 ~GaIAGiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCceeeeehHHHHHHHHHHHHHHHHeec
Confidence 344677777766644 455566665443
No 129
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=56.47 E-value=3.5 Score=34.49 Aligned_cols=32 Identities=25% Similarity=0.628 Sum_probs=22.9
Q ss_pred CCCCc-EEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616 6 CENKG-TCVKDARGQPSCRCVGSFIGPHCAQKS 37 (143)
Q Consensus 6 C~NgG-~C~~~~~~~~~C~C~~gy~G~rCe~~~ 37 (143)
|..+| .|.....+...|.|..+|.|++|+.-.
T Consensus 257 Cngh~s~c~~~~~~~~~C~C~~nt~G~~Ce~C~ 289 (375)
T 4aqt_A 257 CNGHASECVKNEFDKLMCNCKHNTYGVDCEKCL 289 (375)
T ss_dssp CTTSCSCEEECTTSCEEECCCTTEESTTSCEEC
T ss_pred CCCCCcccCCCCCCCeeeeCcCCCcCCCcccCC
Confidence 44434 344444567789999999999999754
No 130
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=56.09 E-value=8.3 Score=32.79 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q psy3616 45 GIAATVVFLIIIALFVWMICARSE 68 (143)
Q Consensus 45 ~i~~~Vl~lilIvllv~~~~~r~r 68 (143)
|+..++++.++|++++.++.++|+
T Consensus 416 G~~~~~~i~~~~~~~v~~~~~~r~ 439 (442)
T 3j0c_A 416 GSAVIIIIGLVLATIVAMYVLTNQ 439 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhhhc
Confidence 333333333333344444444433
No 131
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=55.00 E-value=13 Score=21.44 Aligned_cols=20 Identities=20% Similarity=0.004 Sum_probs=8.7
Q ss_pred eehhHHHHHHHHHHHHHHHH
Q psy3616 42 IAGGIAATVVFLIIIALFVW 61 (143)
Q Consensus 42 ia~~i~~~Vl~lilIvllv~ 61 (143)
+.+.+.++++.+|..++++.
T Consensus 12 i~lII~~vmaGiIG~IllI~ 31 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLIS 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 132
>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Probab=54.77 E-value=7.2 Score=26.91 Aligned_cols=27 Identities=15% Similarity=0.608 Sum_probs=21.9
Q ss_pred CCCCCcEEEeCCCCCCeeeecCCCcCC
Q psy3616 5 YCENKGTCVKDARGQPSCRCVGSFIGP 31 (143)
Q Consensus 5 ~C~NgG~C~~~~~~~~~C~C~~gy~G~ 31 (143)
-|.-.+.|.....+...|+|..||.|+
T Consensus 11 ~C~~NA~C~r~~~g~e~C~C~~gy~gd 37 (99)
T 1ob1_C 11 QCPQNSGCFRHLDEREECKCLLNYKQE 37 (99)
T ss_dssp CCCTTEEEECCTTSCCEEEECTTEEEE
T ss_pred CCCCCCCeEEcCCCCEEEEecCCeecC
Confidence 466678897755789999999999875
No 133
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=54.56 E-value=4.5 Score=34.56 Aligned_cols=27 Identities=30% Similarity=0.758 Sum_probs=22.7
Q ss_pred cEEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616 10 GTCVKDARGQPSCRCVGSFIGPHCAQKS 37 (143)
Q Consensus 10 G~C~~~~~~~~~C~C~~gy~G~rCe~~~ 37 (143)
..|... .+...|.|+.+++|+.||.-.
T Consensus 304 s~C~~~-~g~~~C~C~~~ttG~~CE~C~ 330 (426)
T 3zyj_B 304 TVCVYD-NSKLTCECEHNTTGPDCGKCK 330 (426)
T ss_dssp SCEEEE-TTEEEECCCTTEESSSSCEEC
T ss_pred hhcCCC-CCCceeeCCCCCcCCCccccc
Confidence 478877 666899999999999999754
No 134
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Probab=53.64 E-value=9.9 Score=26.51 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=21.9
Q ss_pred CCCCcEEEeCCCCCCeeeecCCCcCC
Q psy3616 6 CENKGTCVKDARGQPSCRCVGSFIGP 31 (143)
Q Consensus 6 C~NgG~C~~~~~~~~~C~C~~gy~G~ 31 (143)
|.-++.|.....+..+|+|..||.|+
T Consensus 18 Cp~NA~C~r~~~G~e~CrCl~gY~~d 43 (105)
T 1n1i_A 18 VPENAACYRYLDGTEEWRCLLGFKEV 43 (105)
T ss_dssp CCTTEEEEECTTSCEEEEECTTEEEC
T ss_pred CCCCCCeEECCCCCEeEEEECCeecc
Confidence 66678898865888999999999875
No 135
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=52.60 E-value=11 Score=24.30 Aligned_cols=16 Identities=25% Similarity=0.168 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3616 46 IAATVVFLIIIALFVW 61 (143)
Q Consensus 46 i~~~Vl~lilIvllv~ 61 (143)
|.++|++++-|++++.
T Consensus 23 ifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 23 IFGGLLCIAGIALALS 38 (67)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 4444554444544444
No 136
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=48.28 E-value=6.1 Score=32.97 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=15.9
Q ss_pred CCCee-eecCCCcCCCccccc
Q psy3616 18 GQPSC-RCVGSFIGPHCAQKS 37 (143)
Q Consensus 18 ~~~~C-~C~~gy~G~rCe~~~ 37 (143)
...+| .|..+++|++|+.-.
T Consensus 332 ~~G~C~~C~~n~~G~~Ce~C~ 352 (375)
T 4aqt_A 332 HGGHCTNCRDNTDGAKCERCR 352 (375)
T ss_dssp CCEEECSCTTTEESTTSCEEC
T ss_pred CCCCCCCCCCCCcCCCCCCCC
Confidence 34578 599999999998754
No 137
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=47.04 E-value=5.1 Score=36.34 Aligned_cols=33 Identities=24% Similarity=0.504 Sum_probs=23.7
Q ss_pred CCCCCCCCcEEEeCCCCCCeeeecCCCcC----CCccc
Q psy3616 2 CKGYCENKGTCVKDARGQPSCRCVGSFIG----PHCAQ 35 (143)
Q Consensus 2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G----~rCe~ 35 (143)
|.+++...++|+.. .+++.|.|++||.+ ..|..
T Consensus 355 C~~~~~C~~~C~n~-~gsy~C~C~~Gy~l~~~~~~C~~ 391 (791)
T 3m0c_C 355 CQDPDTCSQLCVNL-EGGYKCQCEEGFQLDPHTKACKA 391 (791)
T ss_dssp CSSSSSCTTTCCBC-SSCBCCCCCSSEECCSSCCCCEE
T ss_pred cCCCCCCCCeeecC-CCCceeecCCCCEeCCCCceeee
Confidence 44444445678888 88999999999964 55754
No 138
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=46.02 E-value=12 Score=29.40 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=17.2
Q ss_pred CCCCC-CCc----EEEeCCC-CCCeeeecCCCcC
Q psy3616 3 KGYCE-NKG----TCVKDAR-GQPSCRCVGSFIG 30 (143)
Q Consensus 3 ~~~C~-NgG----~C~~~~~-~~~~C~C~~gy~G 30 (143)
.++|. |+| .|..... ..+.|.|+.||.-
T Consensus 267 ~n~C~~~ng~Cs~~C~~~~~~~~~~C~C~~g~~l 300 (318)
T 3sov_A 267 TNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKL 300 (318)
T ss_dssp CCTTTTTGGGCSSEEEECSSTTSEEEECSTTCCB
T ss_pred ccccccCCCCcceEEecCCCCCCeEEECCCCCEE
Confidence 36774 223 4555522 2689999999853
No 139
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=40.92 E-value=44 Score=24.16 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=6.1
Q ss_pred HHHHHHHhhhcc
Q psy3616 60 VWMICARSERRR 71 (143)
Q Consensus 60 v~~~~~r~rr~k 71 (143)
+.+-..|.||+.
T Consensus 70 ImLsYiRSKk~E 81 (138)
T 2k21_A 70 IMLSYIRSKKLE 81 (138)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHhHhhhcc
Confidence 344455655553
No 140
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=38.44 E-value=6.5 Score=22.89 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=6.9
Q ss_pred CccccccceeeehhHHHHHH
Q psy3616 32 HCAQKSEFAYIAGGIAATVV 51 (143)
Q Consensus 32 rCe~~~~~~~ia~~i~~~Vl 51 (143)
+|....+...+++.|+|++-
T Consensus 1 rc~dssdplv~aa~iiGIlH 20 (43)
T 2kih_A 1 RSNDSSDPLVVAANIIGILH 20 (43)
T ss_dssp -----CCHHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHH
Confidence 35544444444444444443
No 141
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=35.70 E-value=84 Score=20.29 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3616 46 IAATVVFLIIIALFVW 61 (143)
Q Consensus 46 i~~~Vl~lilIvllv~ 61 (143)
|.++|++++-|++++.
T Consensus 22 ifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 22 VIAGILFILGILIVLS 37 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4444444444444444
No 142
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose octasulphate, hormone/growth factor complex; HET: SO4; 1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB: 1lr8_A* 1lr9_A
Probab=34.96 E-value=32 Score=21.44 Aligned_cols=22 Identities=23% Similarity=0.702 Sum_probs=18.3
Q ss_pred CCCCCcEEEeCCCCCCeeeecC
Q psy3616 5 YCENKGTCVKDARGQPSCRCVG 26 (143)
Q Consensus 5 ~C~NgG~C~~~~~~~~~C~C~~ 26 (143)
+|..|..|+.+..+.+.|.|+.
T Consensus 8 ~C~~g~~C~~~~~~~~~C~C~~ 29 (74)
T 1lr7_A 8 DCGPGKKCRMNKKNKPRCVCAP 29 (74)
T ss_dssp CCCTTEEEEECTTSCEEEEECC
T ss_pred cCcCCCEEeECCCCCeeecCCC
Confidence 5888999998746789999965
No 143
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=33.89 E-value=51 Score=19.51 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Q psy3616 48 ATVVFLIIIALFVWMICARSERRRE 72 (143)
Q Consensus 48 ~~Vl~lilIvllv~~~~~r~rr~kk 72 (143)
..|+++-+++-..|++..-...||+
T Consensus 19 l~v~f~~~L~PagWVLshL~~YKk~ 43 (46)
T 1v54_M 19 LSVTFLSFLLPAGWVLYHLDNYKKS 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHhccc
Confidence 3444444455557877766555544
No 144
>2yew_B E1 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=33.73 E-value=29 Score=29.35 Aligned_cols=7 Identities=14% Similarity=0.301 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy3616 59 FVWMICA 65 (143)
Q Consensus 59 lv~~~~~ 65 (143)
++.++.+
T Consensus 418 ~v~~~~~ 424 (427)
T 2yew_B 418 VVSIVVC 424 (427)
T ss_dssp HHHHHHH
T ss_pred Hhhheee
Confidence 3333333
No 145
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=32.58 E-value=62 Score=17.94 Aligned_cols=15 Identities=27% Similarity=0.742 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy3616 48 ATVVFLIIIALFVWM 62 (143)
Q Consensus 48 ~~Vl~lilIvllv~~ 62 (143)
++|+++.+++++.|+
T Consensus 10 ~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 10 AVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 344444444444454
No 146
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=29.77 E-value=19 Score=30.44 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=16.7
Q ss_pred CCCeee-ecCCCcCCCccccc
Q psy3616 18 GQPSCR-CVGSFIGPHCAQKS 37 (143)
Q Consensus 18 ~~~~C~-C~~gy~G~rCe~~~ 37 (143)
+..+|. |..++.|++||.-.
T Consensus 355 ~~G~C~~C~~nt~G~~CErC~ 375 (403)
T 2y38_A 355 GGGVCLDCQHHTTGINCERCL 375 (403)
T ss_dssp CCEEESSCCSSEESTTSCEEC
T ss_pred CCCCCCCCcCcCcCCCCCcCC
Confidence 467995 99999999999744
No 147
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=29.36 E-value=26 Score=29.52 Aligned_cols=32 Identities=19% Similarity=0.532 Sum_probs=22.1
Q ss_pred CCCCcE-EEeCC-CC--CCeeeecCCCcCCCccccc
Q psy3616 6 CENKGT-CVKDA-RG--QPSCRCVGSFIGPHCAQKS 37 (143)
Q Consensus 6 C~NgG~-C~~~~-~~--~~~C~C~~gy~G~rCe~~~ 37 (143)
|.+++. |...+ .+ .-.|.|..++.|++||.-.
T Consensus 268 CnGHA~~C~~~~~~~~~~g~C~C~hnT~G~~CErC~ 303 (403)
T 2y38_A 268 CHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCC 303 (403)
T ss_dssp CTTBCSCEEESCTTSTTCEEECCCTTEESSSCCEEC
T ss_pred cCCCccccCCCCCCCccceEeECcCcCcCCCCCCCC
Confidence 555544 87541 11 2469999999999999754
No 148
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=29.07 E-value=71 Score=17.07 Aligned_cols=18 Identities=33% Similarity=0.659 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3616 46 IAATVVFLIIIALFVWMI 63 (143)
Q Consensus 46 i~~~Vl~lilIvllv~~~ 63 (143)
|+++|.++-++++..|++
T Consensus 9 iaglvalltflafgfwlf 26 (32)
T 2lx0_A 9 IAGLVALLTFLAFGFWLF 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666655543
No 149
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=27.80 E-value=71 Score=18.00 Aligned_cols=7 Identities=14% Similarity=0.278 Sum_probs=3.1
Q ss_pred HHHHHhh
Q psy3616 62 MICARSE 68 (143)
Q Consensus 62 ~~~~r~r 68 (143)
++++|-|
T Consensus 27 flywrgr 33 (40)
T 2l9u_A 27 FLYWRGR 33 (40)
T ss_dssp HHHHHHH
T ss_pred eEEEccc
Confidence 4445443
No 150
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=25.51 E-value=87 Score=27.06 Aligned_cols=26 Identities=19% Similarity=0.524 Sum_probs=18.4
Q ss_pred EEEeCC-CCCCeeeecCCC----cCCCcccc
Q psy3616 11 TCVKDA-RGQPSCRCVGSF----IGPHCAQK 36 (143)
Q Consensus 11 ~C~~~~-~~~~~C~C~~gy----~G~rCe~~ 36 (143)
.|.... ...+.|.|+.|| -|..|...
T Consensus 285 lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~ 315 (619)
T 3s94_A 285 LCLMSPVKPFYQCACPTGVKLLENGKTCKDG 315 (619)
T ss_dssp EEEECSSTTSEEEECCTTCCBCTTSSCBCSS
T ss_pred eEECCCCCCCceEeCCchheecccCcccCCC
Confidence 455542 246899999998 46789863
No 151
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=25.30 E-value=65 Score=25.80 Aligned_cols=6 Identities=0% Similarity=-0.152 Sum_probs=2.2
Q ss_pred HHhhhc
Q psy3616 65 ARSERR 70 (143)
Q Consensus 65 ~r~rr~ 70 (143)
.|+.++
T Consensus 248 kr~~W~ 253 (269)
T 2qjy_B 248 NKRLWA 253 (269)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 333333
No 152
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=24.48 E-value=78 Score=25.15 Aligned_cols=9 Identities=22% Similarity=0.187 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy3616 53 LIIIALFVW 61 (143)
Q Consensus 53 lilIvllv~ 61 (143)
+.|+++.++
T Consensus 233 ~fL~il~~l 241 (258)
T 1zrt_D 233 VMLGLLSVM 241 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 153
>2d56_A Asabf; antibacterial peptide, cystine stabilized alpha-beta motif, antibiotic; NMR {Ascaris suum}
Probab=24.03 E-value=63 Score=19.65 Aligned_cols=21 Identities=38% Similarity=0.960 Sum_probs=16.7
Q ss_pred CCCCCCcEEEeCCCCCCeeeecC
Q psy3616 4 GYCENKGTCVKDARGQPSCRCVG 26 (143)
Q Consensus 4 ~~C~NgG~C~~~~~~~~~C~C~~ 26 (143)
+-|. -|.|... .+.|.|.|..
T Consensus 30 Q~C~-TG~C~kr-~~rPTCvC~R 50 (53)
T 2d56_A 30 QNCG-TGHCEKR-GGRPTCVCDR 50 (53)
T ss_dssp TTSC-CEEEECS-SSCCEEEECC
T ss_pred cccc-cceeecc-CCCCCEEecc
Confidence 3466 4889999 9999999964
No 154
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A*
Probab=24.00 E-value=16 Score=30.84 Aligned_cols=15 Identities=33% Similarity=0.487 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhh
Q psy3616 54 IIIALFVWMICARSE 68 (143)
Q Consensus 54 ilIvllv~~~~~r~r 68 (143)
+||+|.++.+..|||
T Consensus 442 ~~~~~~~~~~~~~~~ 456 (458)
T 3qho_A 442 ILIILAVFSLLLRRA 456 (458)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHhc
Confidence 333333333334443
No 155
>4a94_C Carboxypeptidase inhibitor; hydrolase-hydrolase inhibitor complex, CPA4, NVCI, PCI, LCI; 1.70A {Nerita versicolor}
Probab=23.91 E-value=10 Score=22.64 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=21.8
Q ss_pred CCCCCCCcEEEeC--CCCCCeeeecCCCcCCCccc
Q psy3616 3 KGYCENKGTCVKD--ARGQPSCRCVGSFIGPHCAQ 35 (143)
Q Consensus 3 ~~~C~NgG~C~~~--~~~~~~C~C~~gy~G~rCe~ 35 (143)
+.||.|-|.|-.. ..-.+.|+-...=.|-.|+.
T Consensus 6 drpcinpgrcplvpdatctfvckaadndfgyecqh 40 (53)
T 4a94_C 6 DRPCINPGRCPLVPDATCTFVCKAADNDFGYECQH 40 (53)
T ss_dssp CBCCSSCCCCTTSTTCEEEEEEEECSSTTSEEEEE
T ss_pred CCcccCCCcCccccCCeEEEEEeeccCCCCceeeE
Confidence 4689999988654 22346677666666666665
No 156
>3sek_C Follistatin-related protein 3; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, follistatin domain (FSD); HET: NAG; 2.40A {Homo sapiens} PDB: 2kcx_A
Probab=23.30 E-value=50 Score=25.22 Aligned_cols=21 Identities=29% Similarity=0.730 Sum_probs=14.5
Q ss_pred CCCCCcEEEeCCCCCCeeeecC
Q psy3616 5 YCENKGTCVKDARGQPSCRCVG 26 (143)
Q Consensus 5 ~C~NgG~C~~~~~~~~~C~C~~ 26 (143)
.|..|.+|+.. .+.+.|.|+.
T Consensus 68 ~C~~G~~C~~~-~~~p~CvC~~ 88 (209)
T 3sek_C 68 ECGPGKACRML-GGRPRCECAP 88 (209)
T ss_dssp CCCTTEEEEC-----CEEEECC
T ss_pred cCCCCCCCccc-CCeeeccCCC
Confidence 57779999988 7889999975
No 157
>2yew_C E2 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=23.21 E-value=58 Score=27.73 Aligned_cols=14 Identities=0% Similarity=0.126 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhhh
Q psy3616 56 IALFVWMICARSER 69 (143)
Q Consensus 56 Ivllv~~~~~r~rr 69 (143)
+++.+|++|..|++
T Consensus 380 ~~~s~~~~c~aR~~ 393 (421)
T 2yew_C 380 SGFSCFLCSVARTK 393 (421)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc
Confidence 33446666665543
No 158
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}
Probab=23.16 E-value=25 Score=27.00 Aligned_cols=24 Identities=17% Similarity=0.632 Sum_probs=17.3
Q ss_pred EEEeCCCCCCeeeecCCCc----CCCccc
Q psy3616 11 TCVKDARGQPSCRCVGSFI----GPHCAQ 35 (143)
Q Consensus 11 ~C~~~~~~~~~C~C~~gy~----G~rCe~ 35 (143)
.|... .+.+.|.|..||. +..|..
T Consensus 16 ~C~~~-~~~~~C~C~~G~~l~~d~~sC~p 43 (283)
T 3f1s_B 16 FCLPG-QESYTCSCAQGYRLGEDHKQCVP 43 (283)
T ss_dssp BCCCC-TTSCCCBCCTTEEECTTSSCEEE
T ss_pred EeeCC-CCCeEecCCCCcccCCCCCcccc
Confidence 45555 6789999999975 556664
No 159
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal domain, PROT complex, hormone-growth factor complex; HET: 1PG; 2.00A {Rattus norvegicus}
Probab=23.08 E-value=68 Score=22.75 Aligned_cols=25 Identities=24% Similarity=0.792 Sum_probs=19.8
Q ss_pred CCC-CCCCCcEEEeCCCCCCeeeecC
Q psy3616 2 CKG-YCENKGTCVKDARGQPSCRCVG 26 (143)
Q Consensus 2 C~~-~C~NgG~C~~~~~~~~~C~C~~ 26 (143)
|.+ +|..|..|+.+..+.+.|.|+.
T Consensus 6 C~~~~C~~g~~C~~~~~~~~~C~C~~ 31 (152)
T 2arp_F 6 CENVDCGPGKKCRMNKKNKPRCVCAP 31 (152)
T ss_dssp CTTCCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCcCCCCCEeeeCCCCCeeecCCC
Confidence 444 6888999998646789999975
No 160
>1ixt_A Spasmodic protein TX9A-like protein; conotoxin, P-superfamily, ICK, inhibitory cystine knot, conus gloriamaris, GM9A, GM9.1; NMR {Synthetic} SCOP: g.3.6.1
Probab=22.92 E-value=24 Score=18.49 Aligned_cols=13 Identities=23% Similarity=0.935 Sum_probs=9.3
Q ss_pred CCCCCCCCCcEEE
Q psy3616 1 VCKGYCENKGTCV 13 (143)
Q Consensus 1 ~C~~~C~NgG~C~ 13 (143)
+|++.|+.+-.|.
T Consensus 1 ~cnnscq~hs~c~ 13 (27)
T 1ixt_A 1 SCNNSCQSHSDCA 13 (27)
T ss_dssp CCCBCCSSSSCSS
T ss_pred CccchhhhhhhHh
Confidence 5788888776665
No 161
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=22.62 E-value=49 Score=28.74 Aligned_cols=27 Identities=19% Similarity=0.545 Sum_probs=19.9
Q ss_pred EEEeCCCCCCeeeecCCCc----CCCccccc
Q psy3616 11 TCVKDARGQPSCRCVGSFI----GPHCAQKS 37 (143)
Q Consensus 11 ~C~~~~~~~~~C~C~~gy~----G~rCe~~~ 37 (143)
.|.....+.+.|.|+.||. |..|....
T Consensus 278 ~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~ 308 (628)
T 4a0p_A 278 LCLAVPVGGFVCGCPAHYSLNADNRTCSAPT 308 (628)
T ss_dssp EEEEETTTEEEEECSTTCEECTTSSCEECCS
T ss_pred hhhcCCCCCeeEEcCCCcEecccCCcCcccc
Confidence 5666623789999999985 67787643
No 162
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=28.06 E-value=18 Score=25.70 Aligned_cols=8 Identities=38% Similarity=1.003 Sum_probs=5.2
Q ss_pred CCCCCCCc
Q psy3616 117 EDGWEMPN 124 (143)
Q Consensus 117 ~d~~~~~~ 124 (143)
..|||.||
T Consensus 84 ~nGYENPT 91 (122)
T 2lp1_A 84 QNGYENPT 91 (122)
Confidence 34677777
No 163
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=22.00 E-value=64 Score=25.35 Aligned_cols=7 Identities=14% Similarity=0.126 Sum_probs=2.6
Q ss_pred HHHhhhc
Q psy3616 64 CARSERR 70 (143)
Q Consensus 64 ~~r~rr~ 70 (143)
..|+.++
T Consensus 222 ~kr~~W~ 228 (241)
T 1pp9_D 222 MKRHKWS 228 (241)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 3333333
No 164
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=21.82 E-value=29 Score=30.53 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCeeeecCCCcC----CCccc
Q psy3616 10 GTCVKDARGQPSCRCVGSFIG----PHCAQ 35 (143)
Q Consensus 10 G~C~~~~~~~~~C~C~~gy~G----~rCe~ 35 (143)
++|+.. .+++.|.|++||.+ ..|..
T Consensus 345 ~~C~n~-~g~y~C~C~~G~~~~~~~~~C~~ 373 (699)
T 1n7d_A 345 QLCVNL-EGGYKCQCEEGFQLDPHTKACKA 373 (699)
T ss_dssp TTCCBC-SSCBCCCCCSSCBCCSSCCCCBC
T ss_pred cccccC-CCCeeeeeecccccCCCCCcccc
Confidence 367777 88999999999985 45764
No 165
>2lkq_A Immunoglobulin lambda-like polypeptide 1; PRE-BCR, B cell development, immune system; NMR {Homo sapiens}
Probab=21.78 E-value=31 Score=17.70 Aligned_cols=8 Identities=50% Similarity=1.286 Sum_probs=6.2
Q ss_pred CCcCCCcc
Q psy3616 27 SFIGPHCA 34 (143)
Q Consensus 27 gy~G~rCe 34 (143)
+|+|+||.
T Consensus 18 swtgprc~ 25 (26)
T 2lkq_A 18 SWTGPRCX 25 (26)
T ss_dssp TCCCSCC-
T ss_pred CccCCCCC
Confidence 58999995
No 166
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=21.76 E-value=1.1e+02 Score=19.66 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3616 47 AATVVFLIIIALFVWMICARSERRRE 72 (143)
Q Consensus 47 ~~~Vl~lilIvllv~~~~~r~rr~kk 72 (143)
+..++++-+++-..|++..-..++|+
T Consensus 42 gltv~f~~~L~PagWVLshLe~YKk~ 67 (70)
T 2y69_M 42 GLSVTFLSFLLPAGWVLYHLDNYKKS 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHSCC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 33444444455557888776666554
No 167
>1jlz_A Tityustoxin alpha-KTX; scorpion venom, K+-channel blocker, structure; NMR {Synthetic} SCOP: g.3.7.2
Probab=21.58 E-value=17 Score=19.19 Aligned_cols=20 Identities=30% Similarity=1.165 Sum_probs=13.6
Q ss_pred CCCCCCCCcEEEeCCCCCCeeeecC
Q psy3616 2 CKGYCENKGTCVKDARGQPSCRCVG 26 (143)
Q Consensus 2 C~~~C~NgG~C~~~~~~~~~C~C~~ 26 (143)
|..||.-.|.|++. .|+|-+
T Consensus 5 C~~~C~~~gKCmNg-----kC~Cy~ 24 (26)
T 1jlz_A 5 CRKKCKGSGKCING-----RCKCYX 24 (26)
T ss_dssp HHHHTTSSEEEETT-----EEEEC-
T ss_pred hhhhhCCCCEEeCC-----Cceeec
Confidence 45567677899866 688754
No 168
>1nl1_A Prothrombin; hydrolase; HET: CGU NAG; 1.90A {Bos taurus} SCOP: g.14.1.1 g.32.1.1 PDB: 2pf2_A* 2pf1_A* 1nl2_A* 2spt_A*
Probab=21.21 E-value=14 Score=26.86 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=24.2
Q ss_pred CCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616 6 CENKGTCVKDARGQPSCRCVGSFIGPHCAQK 36 (143)
Q Consensus 6 C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~ 36 (143)
|.+ |.|.......++.....+.+|..|+.=
T Consensus 61 C~~-g~C~~g~G~~YRG~~s~T~sG~~Cq~W 90 (147)
T 1nl1_A 61 CLE-GNCAEGVGMNYRGNVSVTRSGIECQLW 90 (147)
T ss_dssp HHH-TSSBCTTSTTCCCCCCBBTTSCBBCCT
T ss_pred CCC-CcCCCCCCCccccccccCCCCCcCCCC
Confidence 776 779877344599999999999999973
No 169
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation factor domain, heparin binding domain, angiogene protein binding-cytokine complex; 2.65A {Homo sapiens} PDB: 1kmx_A 1vgh_A 2vgh_A
Probab=20.56 E-value=6.3 Score=30.35 Aligned_cols=32 Identities=13% Similarity=0.442 Sum_probs=23.3
Q ss_pred CCCCCcEEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616 5 YCENKGTCVKDARGQPSCRCVGSFIGPHCAQKS 37 (143)
Q Consensus 5 ~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~~ 37 (143)
||.+..+|... ..-..|+|.-.++|.+|+...
T Consensus 172 ~~~~~~~~~~~-~~~~~c~~~~~~~~~~c~~~~ 203 (218)
T 4deq_A 172 PCSERRKHLFV-QDPQTCKCSCKNTDSRCKARQ 203 (218)
T ss_dssp CCCSSSTTSEE-ECTTTCCEEESSCHHHHHTTT
T ss_pred ccccCCccccc-CCCcceEccCCcccccccccc
Confidence 67777777444 334788888888999998753
Done!