RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3616
(143 letters)
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 35.6 bits (82), Expect = 3e-04
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 3 KGYCENKGTCVK-DARGQPSCRCVGSFIGPHCAQKS 37
GYC N G C+ ++ +C CV + G C +
Sbjct: 11 DGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD 46
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 35.6 bits (82), Expect = 4e-04
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 3 KGYCENKGTCVK-DARGQPSCRCVGSFIGPHCAQKS 37
GYC + G C+ +A + +C CV +IG C +
Sbjct: 11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRD 46
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage
on basic residues, disease mutation, glycoprotein,
pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB:
2rmz_A 2rn0_A 2l91_A
Length = 43
Score = 33.3 bits (76), Expect = 0.002
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 31 PHCAQKSEFAYIAGGIAATVVFLIIIALFVWMICARSERRRE 72
P + + + + ++ + + AL +W + R+E
Sbjct: 1 PESPKGPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKE 42
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 35.0 bits (80), Expect = 0.005
Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 8/122 (6%)
Query: 2 CKGYCENKGTCVKDARGQPSCRCVGS-FIGPHCAQKSEFAYIAGGI---AATVVFLIIIA 57
C C+++G CV+ + C C + + GP+C + ++ + + + FL+
Sbjct: 6 CYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLRTTLRPSPSFIHFLLTHG 65
Query: 58 LFVWMICARSERRREPKKLVAQTNDQTGSQVNFYYGGAPYAESVAPSHHSTYA----HYY 113
++W + R +LV Y Y + S+ S Y
Sbjct: 66 RWLWDFVNATFIRDTLMRLVLTVRSNLIPSPPTYNIAHDYISWESFSNVSYYTRILPSVP 125
Query: 114 DD 115
D
Sbjct: 126 RD 127
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 33.0 bits (74), Expect = 0.018
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHC 33
C G C N G C + C C F GPHC
Sbjct: 151 CPGGCRNGGFCNERRI----CECPDGFHGPHC 178
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 32.8 bits (74), Expect = 0.034
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 2 CKGYCENKGTCVKDARGQPSCRCVGS-FIGPHCAQKSEFAYIAGGIA---ATVVFLIIIA 57
C C+N+G C+ Q C C + F G +C I + TV +++
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYILTHF 64
Query: 58 LFVWMICARSERRRE 72
VW I R
Sbjct: 65 KGVWNIVNNIPFLRS 79
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease,
polymorphism, protease, zinc; 2.30A {Homo sapiens} PDB:
1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 30.2 bits (68), Expect = 0.034
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 3 KGYCENKGTCV-KDARGQPSCRCVGSFIGPHCAQKSEFA 40
+C + GTC +P+C C ++G C A
Sbjct: 13 TQFCFH-GTCRFLVQEDKPACVCHSGYVGARCEHADLLA 50
>3ca7_A Protein spitz; argos, EGF, developmental protein,
differentiation, EGF-like domain, endoplasmic
reticulum, glycoprotein, golgi apparatus; 1.50A
{Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Length = 52
Score = 29.9 bits (67), Expect = 0.044
Identities = 11/37 (29%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 3 KGYCENKGTCVKDARG---QPSCRCVGSFIGPHCAQK 36
YC N C SC C F+G C K
Sbjct: 13 AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 29.4 bits (67), Expect = 0.047
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHC 33
C N G+C D C C F G +C
Sbjct: 11 CLNGGSCK-DDINSYECWCPFGFEGKNC 37
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 31.6 bits (72), Expect = 0.051
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHC 33
C N GTC + C C + GP+C
Sbjct: 140 CLNGGTCSNTGPDKYQCSCPEGYSGPNC 167
Score = 26.6 bits (59), Expect = 2.3
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHC 33
G+C CRC + G +C
Sbjct: 73 SPKHGSCKLP----GDCRCQYGWQGLYC 96
Score = 25.4 bits (56), Expect = 7.0
Identities = 4/34 (11%), Positives = 10/34 (29%), Gaps = 4/34 (11%)
Query: 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35
+ + G+ + C + G C +
Sbjct: 3 GSHHHHHHGSIEGRSA----VTCDDYYYGFGCNK 32
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 29.8 bits (67), Expect = 0.055
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 2 CKGYCENKGTCVK-DARGQPSCRCVGSFIGPHCAQKSEFAY 41
K YC G C A PSC C +IG C ++ + Y
Sbjct: 12 YKHYCIK-GRCRFVVAEQTPSCVCDEGYIGARC-ERVDLFY 50
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 29.7 bits (66), Expect = 0.064
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 3 KGYCENKGTC----VKDARGQPSCRCVGSFIGPHCAQK 36
K +C N G C + C+C F G C +
Sbjct: 11 KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTEN 48
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 30.1 bits (67), Expect = 0.067
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 2 CKGYCENKGTCVK-DARGQPSCRCVGSFIGPHC 33
K +C + G C PSC C + G C
Sbjct: 44 YKDFCIH-GECKYVKELRAPSCICHPGYHGERC 75
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 29.5 bits (66), Expect = 0.084
Identities = 11/37 (29%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 3 KGYCENKGTCVKDARGQP---SCRCVGSFIGPHCAQK 36
YC N C SC C F+G C K
Sbjct: 13 AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 30.3 bits (69), Expect = 0.11
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHC 33
CE+ G C+ + G C+C+ + GP C
Sbjct: 15 CEHAGKCI-NTLGSFECQCLQGYTGPRC 41
Score = 29.9 bits (68), Expect = 0.14
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHC 33
C + G C+ D + C C F G C
Sbjct: 91 CLHNGRCL-DKINEFQCECPTGFTGHLC 117
Score = 29.5 bits (67), Expect = 0.21
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHC 33
C+N TC+ D G+ C C+ + G HC
Sbjct: 53 CQNDATCL-DQIGEFQCICMPGYEGVHC 79
>2vh0_B Activated factor XA light chain; serine protease, EGF-like
domain, blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 30.0 bits (68), Expect = 0.13
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHC 33
C+N+G C D G+ +C C+ F G +C
Sbjct: 50 CQNQGKCK-DGLGEYTCTCLEGFEGKNC 76
Score = 26.5 bits (59), Expect = 2.6
Identities = 3/28 (10%), Positives = 7/28 (25%), Gaps = 1/28 (3%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHC 33
+ C + + C C +
Sbjct: 89 GDCDQFCH-EEQNSVVCSCARGYTLADN 115
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular
MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 30.1 bits (68), Expect = 0.15
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 6 CENKGTCV-KDARGQPSCRCVGSFIGPHCAQK 36
CEN G C+ A G SC C F P+C+
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSV 39
Score = 29.7 bits (67), Expect = 0.17
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHC 33
C+N G C D SC C G F+G +C
Sbjct: 105 CKNGGICT-DLVANYSCECPGEFMGRNC 131
Score = 28.1 bits (63), Expect = 0.59
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 6 CENKGTCV------KDARGQPSCRCVGSFIGPHC 33
C N GTC D C+C F G HC
Sbjct: 60 CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHC 93
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell
A cleavage on PAIR of basic residues, disease mutation,
disul bond, glycoprotein; NMR {Homo sapiens}
Length = 79
Score = 29.1 bits (65), Expect = 0.15
Identities = 7/56 (12%), Positives = 20/56 (35%)
Query: 34 AQKSEFAYIAGGIAATVVFLIIIALFVWMICARSERRREPKKLVAQTNDQTGSQVN 89
++ + + + ++ + + AL +W + R+E K + N
Sbjct: 5 SKGPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTAN 60
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 30.7 bits (69), Expect = 0.15
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35
C+ C + G CV+ + C C ++GP C Q
Sbjct: 426 CEPACRHGGVCVRPNK----CLCKKGYLGPQCEQ 455
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS
domain, hydrolase, metal-binding, transmembrane; 3.30A
{Methanocaldococcus jannaschii}
Length = 224
Score = 30.2 bits (68), Expect = 0.16
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 39 FAYIAGGIAATVVFLIIIALFVWMICARSERRR 71
+ G+ + + LI+++LFV+ A E R
Sbjct: 179 LIMLLFGLLSMNIILILVSLFVYFG-AEQESRV 210
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 30.2 bits (68), Expect = 0.20
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 1 VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHC 33
VC+ C GTC + + C+C + G HC
Sbjct: 278 VCEPGCGAHGTCHEPNK----CQCQEGWHGRHC 306
Score = 29.8 bits (67), Expect = 0.28
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 1 VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHC 33
C G C N G C + C C F GPHC
Sbjct: 150 ECPGGCRNGGFCNER----RICECPDGFHGPHC 178
Score = 29.4 bits (66), Expect = 0.39
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 1 VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHC 33
C C N G C+ ++ C+C + G C
Sbjct: 246 KCPQPCRNGGKCIGKSK----CKCSKGYQGDLC 274
Score = 28.3 bits (63), Expect = 0.82
Identities = 10/33 (30%), Positives = 10/33 (30%), Gaps = 4/33 (12%)
Query: 1 VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHC 33
C C N GTC C C G C
Sbjct: 214 NCSTTCFNGGTCFYP----GKCICPPGLEGEQC 242
Score = 26.4 bits (58), Expect = 3.7
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 1 VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35
+C C N G CV C C F G +C +
Sbjct: 182 LCTPRCMNGGLCVTPGF----CICPPGFYGVNCDK 212
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 27.9 bits (62), Expect = 0.21
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 3 KGYCENKGTCV-KDARGQPSCRCVGSFIGPHC 33
GYC + G C+ Q CRC + G C
Sbjct: 11 NGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRC 41
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE
membrane protein, transport protein; HET: BNG; 2.78A
{Escherichia coli}
Length = 429
Score = 30.3 bits (69), Expect = 0.21
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 27 SFIGPHCA-QKSEFAYIAGGIAATVVFLIIIALFVWMI 63
+FI P + GG V +++ V
Sbjct: 74 AFISPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKA 111
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 28.6 bits (64), Expect = 0.31
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 5 YCENKGTCVKD-ARGQPSCRCVGSFIGPHC 33
C N GTC + C+C F G C
Sbjct: 55 RCFNGGTCQQALYFSDFVCQCPEGFAGKSC 84
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 28.8 bits (65), Expect = 0.34
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHC 33
C+N G+C D C C+ +F G +C
Sbjct: 55 CQNGGSCK-DQLQSYICFCLPAFEGRNC 81
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 29.0 bits (65), Expect = 0.40
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHC 33
C+N+G C D G+ +C C+ F G +C
Sbjct: 50 CQNQGKCK-DGLGEYTCTCLEGFEGKNC 76
Score = 25.9 bits (57), Expect = 4.5
Identities = 3/28 (10%), Positives = 7/28 (25%), Gaps = 1/28 (3%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHC 33
+ C + + C C +
Sbjct: 89 GDCDQFCH-EEQNSVVCSCARGYTLADN 115
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 29.0 bits (64), Expect = 0.48
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35
C T + +C C + GP C +
Sbjct: 299 CNLHATVCVYDNSKLTCECEHNTTGPDCGK 328
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like
domain, CRDGF, cytokine, glycoprotein, membrane,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 50
Score = 26.8 bits (59), Expect = 0.54
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 3 KGYCENKGTCV-KDARGQPSCRCVGSFIGPHCAQK 36
+ +C + G C + +C+C + G C +K
Sbjct: 17 QNFCIH-GECKYIEHLEAVTCKCQQEYFGERCGEK 50
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 29.1 bits (65), Expect = 0.55
Identities = 16/134 (11%), Positives = 39/134 (29%), Gaps = 18/134 (13%)
Query: 13 VKDARGQPS---------CRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFVWMI 63
+ D C C G C +K + I + ++ + + ++
Sbjct: 668 LSD-AQNNPQLTVVNATVCSCEGK--AIKCQEKLVGGFDLPIILVILGSVLALLILFLLL 724
Query: 64 CARSERRREPKKLVAQTNDQTGSQVNFY----YGGAPYAESVAPSHHSTYAHYYDDEEDG 119
+R++ K+ + D T + +Y G ++ H + D
Sbjct: 725 LLFLKRKKVVKEPLLLPEDDTRDNIFYYGEEGGGEEDQDYDLSQLHRGLDSRPDIMRNDV 784
Query: 120 WEMPNFYNETYMKG 133
+P + +
Sbjct: 785 --VPTLMPAPHYRP 796
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 28.9 bits (64), Expect = 0.57
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 3/35 (8%)
Query: 2 CKGYCENKGTCVKDARGQP---SCRCVGSFIGPHC 33
CK C + C P C C + G C
Sbjct: 242 CKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQC 276
Score = 27.0 bits (59), Expect = 2.9
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHCAQK 36
C N C + C C + G C ++
Sbjct: 295 CNNGEMCDRF----QGCLCSPGWQGLQCERE 321
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 28.5 bits (64), Expect = 0.58
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHC 33
C N G C KD C C F G +C
Sbjct: 56 CLNGGLC-KDDINSYECWCQVGFEGKNC 82
Score = 26.2 bits (58), Expect = 3.2
Identities = 5/32 (15%), Positives = 7/32 (21%)
Query: 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHC 33
K C A + C C +
Sbjct: 89 NIKNGRCKQFCKTGADSKVLCSCTTGYRLAPD 120
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 27.8 bits (62), Expect = 0.65
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35
C C GTC+ D G SC C + G C +
Sbjct: 18 CASLCCGHGTCI-DGIGSFSCDCRSGWEGRFCQR 50
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 28.6 bits (63), Expect = 0.68
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 84 TGSQVNFYYGGAPYAESVAPSHHSTYAHYYDDEEDGWEMPNFY 126
+GS + + + YA+S + + S A + E D PN +
Sbjct: 229 SGSSIKIHENNSAYADS-SNAEKSLGARWNTSEWDTTSSPNNW 270
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 28.7 bits (63), Expect = 0.83
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 5 YCENKGTCVKDARGQPSCRCVGS-FIGPHCAQKSEFAYIAGG 45
C+N G C D + C C G+ ++G C +++ G
Sbjct: 626 PCKNNGMCR-DGWNRYVCDCSGTGYLGRSCEREATVLSYDGS 666
Score = 28.7 bits (63), Expect = 0.85
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 4 GYCENKGTCVKDARGQPSCRCVGS-FIGPHCAQKSE 38
G C N G C Q C C + F G C+Q E
Sbjct: 196 GVCLNGGVCS-VVDDQAVCDCSRTGFRGKDCSQGKE 230
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 28.1 bits (63), Expect = 1.00
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHC 33
C + G+C +D+ +C C + G +C
Sbjct: 13 CLHNGSC-QDSIWGYTCTCSPGYEGSNC 39
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose
octasulphate, hormone/growth factor complex; HET: SO4;
1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB:
1lr8_A* 1lr9_A
Length = 74
Score = 26.0 bits (57), Expect = 2.0
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 5 YCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAG 44
C C + + +P C C P C+ + + G
Sbjct: 8 DCGPGKKCRMNKKNKPRCVCA-----PDCSNITWKGPVCG 42
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like
domain, repeat; HET: ABA; NMR {Mus musculus} SCOP:
g.3.11.1
Length = 45
Score = 25.1 bits (54), Expect = 2.1
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 3 KGYCENKGTCVK-DARGQPSCRCVGSFIGPHC 33
GYC N G + ++ +C CV + G C
Sbjct: 8 DGYCLNGGVXMHIESLDSYTCNCVIGYSGDRC 39
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 2.4
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 14/35 (40%)
Query: 70 RREPKKLVAQTNDQTGSQVNFYYGGAPYAESVAPS 104
++ KKL A YA+ AP+
Sbjct: 19 KQALKKLQASLK--------------LYADDSAPA 39
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane
spanning helix, pigment binding, photosynthesis,
membrane protein; NMR {Rhodospirillum rubrum} SCOP:
f.3.1.1
Length = 52
Score = 24.9 bits (54), Expect = 3.0
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 48 ATVVFLIIIALFVWMICARSER 69
FL ++AL + I +ER
Sbjct: 16 GLATFLFVLALLIHFILLSTER 37
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG
FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 26.4 bits (58), Expect = 3.6
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 5 YCENKGTCVKD---ARGQPSCRCVGSFIGPHCAQKS 37
C G D + G P C C + GP C++K
Sbjct: 19 NCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKI 54
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 25.9 bits (57), Expect = 4.1
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHC 33
C +G C++ G +C C F GP C
Sbjct: 127 CSKQGECLETI-GNYTCSCYPGFYGPEC 153
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 25.9 bits (57), Expect = 4.6
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIGPHC 33
C G CV+ +C C + GP C
Sbjct: 127 CSGHGECVEII-NNYTCNCDVGYYGPQC 153
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 26.1 bits (56), Expect = 4.7
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 5 YCENKGTCVKDARGQPSCRC 24
+C++ C D P C C
Sbjct: 10 HCKHGKVCELDENNTPMCVC 29
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 26.2 bits (57), Expect = 5.4
Identities = 5/35 (14%), Positives = 10/35 (28%), Gaps = 6/35 (17%)
Query: 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK 36
C C +C + + G +C+
Sbjct: 596 CPSPCGKYISCAE------CLKFEKGPFGKNCSAA 624
Score = 25.8 bits (56), Expect = 5.8
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHC 33
+ C +G C + C C + P C
Sbjct: 564 RRVECSGRGRCRCN-----VCECHSGYQLPLC 590
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase
family 31, (beta/alpha)8 barre; HET: PXN; 2.30A
{Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A*
Length = 1020
Score = 26.0 bits (57), Expect = 6.0
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 9/42 (21%)
Query: 101 VAPSHHSTYAHYYDDEEDGWEMPNFYNETYMKGEYRARNFSA 142
V + ++ Y DD + Y +GE+ S
Sbjct: 895 VYTGANGSFDIYEDDGR---------SLKYQQGEWSRIPLSY 927
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane
protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU
DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A*
2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A*
1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A*
1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Length = 1057
Score = 26.0 bits (58), Expect = 6.0
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 42 IAGGIAATVVFLIIIALFVWMICARSERRREPKKLVAQTNDQTGSQ 87
+ G + ATV+ + + +F ++ R R+ E + +
Sbjct: 1008 MGGMVTATVLAIFFVPVFFVVVRRRFSRKNEDIEHSHTVDHHLEHH 1053
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 25.8 bits (55), Expect = 6.3
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCA 34
C+ C G+C+ C C + GP C
Sbjct: 188 CEEMCYGHGSCI----NGTKCICDPGYSGPTCK 216
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 7.6
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 35/93 (37%)
Query: 22 CRCVGSFIGPHCA------QKSEFAYIAGGI-AATVVFLIIIALFVWMICARSERRREPK 74
RC ++ P+ + + S + + M+ + + + +
Sbjct: 308 VRCYEAY--PNTSLPPSILEDS----LENNEGVPS-----------PMLSISNLTQEQVQ 350
Query: 75 KLVAQTNDQ--TGSQV---------NFYYGGAP 96
V +TN G QV N G P
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A
{Larimichthys crocea}
Length = 240
Score = 25.3 bits (56), Expect = 8.4
Identities = 11/65 (16%), Positives = 22/65 (33%)
Query: 77 VAQTNDQTGSQVNFYYGGAPYAESVAPSHHSTYAHYYDDEEDGWEMPNFYNETYMKGEYR 136
+ + SQ + Y GG Y S ++ + + P + + GE++
Sbjct: 9 MEEAAHVKNSQCHNYAGGHVYPGEAFRVPVSDHSLHLSKAKISKPAPQWEGTAVINGEFK 68
Query: 137 ARNFS 141
S
Sbjct: 69 ELKLS 73
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 24.6 bits (53), Expect = 8.5
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIG 30
C + G RC+ F
Sbjct: 12 VPENAACYRYLDGTEEWRCLLYFKE 36
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS;
2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4
g.3.11.4
Length = 105
Score = 24.7 bits (53), Expect = 8.5
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 6 CENKGTCVKDARGQPSCRCVGSFIG 30
C + G RC+ F
Sbjct: 18 VPENAACYRYLDGTEEWRCLLGFKE 42
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein
complex, phosphoesterase fold, OB fold, zinc-binding
motif, DNA replication; HET: DNA; 2.50A {Saccharomyces
cerevisiae}
Length = 206
Score = 25.0 bits (54), Expect = 9.7
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 31 PHCAQKSEFAYIAGGIAATVVFLIIIALFVWMICARSERRREPKKLVAQTNDQTGSQVNF 90
P C ++ F GGI ++ + + + C E+ P +L +Q + ++
Sbjct: 26 PSCDKRFPF----GGIVSSNYYRVSYNG---LQCKHCEQLFTPLQLTSQIEHSIRAHISL 78
Query: 91 YY 92
YY
Sbjct: 79 YY 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.438
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,245,686
Number of extensions: 121903
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 106
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.7 bits)