RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3616
         (143 letters)



>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 50

 Score = 38.3 bits (89), Expect = 1e-05
 Identities = 12/37 (32%), Positives = 14/37 (37%)

Query: 3  KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEF 39
          K YC         A   PSC C   +IG  C +   F
Sbjct: 13 KHYCIKGRCRFVVAEQTPSCVCDEGYIGARCERVDLF 49


>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 49

 Score = 37.5 bits (87), Expect = 3e-05
 Identities = 7/38 (18%), Positives = 13/38 (34%)

Query: 3  KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFA 40
            +C +          +P+C C   ++G  C      A
Sbjct: 12 TQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLA 49


>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 48

 Score = 33.7 bits (77), Expect = 6e-04
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 3  KGYCENKGTCVK-DARGQPSCRCVGSFIGPHC 33
           GYC + G C+  +A  + +C CV  +IG  C
Sbjct: 9  DGYCLHDGVCMYIEALDKYACNCVVGYIGERC 40


>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 53

 Score = 33.7 bits (77), Expect = 7e-04
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 3  KGYCENKGTCVK-DARGQPSCRCVGSFIGPHC 33
           GYC N G C+  ++    +C CV  + G  C
Sbjct: 11 DGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42


>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 46

 Score = 32.4 bits (74), Expect = 0.002
 Identities = 9/31 (29%), Positives = 11/31 (35%)

Query: 3  KGYCENKGTCVKDARGQPSCRCVGSFIGPHC 33
           GYC +          Q  CRC   + G  C
Sbjct: 11 NGYCLHGQCIYLVDMSQNYCRCEVGYTGVRC 41


>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 40

 Score = 32.1 bits (73), Expect = 0.002
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 6  CENKGTCVKDARGQPSCRCVGSFIGPHCAQKSE 38
          C  +G C+ +  G  +C C   F GP C    +
Sbjct: 9  CSKQGECL-ETIGNYTCSCYPGFYGPECEYVRD 40


>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
          [TaxId: 9823]}
          Length = 37

 Score = 30.4 bits (69), Expect = 0.007
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 6  CENKGTCVKDARGQPSCRCVGSFIGPHC 33
          C+N G+C  D      C C+ +F G +C
Sbjct: 10 CQNGGSCK-DQLQSYICFCLPAFEGRNC 36


>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 39

 Score = 30.8 bits (70), Expect = 0.007
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 6  CENKGTCVKDARGQPSCRCVGSFIGPHC 33
          C N G+C  D      C C   F G +C
Sbjct: 11 CLNGGSCK-DDINSYECWCPFGFEGKNC 37


>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
          protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 39

 Score = 30.4 bits (69), Expect = 0.008
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 6  CENKGTCVKDARGQPSCRCVGSFIGPHC 33
          C+N  TC+ D  G+  C C+  + G HC
Sbjct: 9  CQNDATCL-DQIGEFQCICMPGYEGVHC 35


>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
          module {Sheep (Ovis aries) [TaxId: 9940]}
          Length = 42

 Score = 30.6 bits (69), Expect = 0.008
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 6  CENKGTCVKDARGQPSCRCVGS-FIGPHC 33
          C+++G CV+    +  C C  + + GP+C
Sbjct: 10 CQHQGICVRFGLDRYQCDCTRTGYSGPNC 38


>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
          protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 42

 Score = 30.1 bits (68), Expect = 0.010
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 6  CENKGTCVKDARGQPSCRCVGSFIGPHC 33
          CE+ G C+ +  G   C+C+  + GP C
Sbjct: 13 CEHAGKCI-NTLGSFECQCLQGYTGPRC 39


>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 39

 Score = 30.1 bits (68), Expect = 0.010
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 6  CENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35
          C   G CV +     +C+C   F G  C Q
Sbjct: 9  CSGHGECV-ETINNYTCKCDPGFSGLKCEQ 37


>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
          protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 30.0 bits (68), Expect = 0.011
 Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 6  CENKGTCVKDARGQPSCRCVGSFIGPHC 33
          C + G C+ D   +  C C   F G  C
Sbjct: 8  CLHNGRCL-DKINEFQCECPTGFTGHLC 34


>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 39

 Score = 30.0 bits (68), Expect = 0.011
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 6  CENKGTCVKDARGQPSCRCVGSFIGPHC 33
          C+N+G C  D  G+ +C C+  F G +C
Sbjct: 8  CQNQGKCK-DGLGEYTCTCLEGFEGKNC 34


>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like
          module {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 41

 Score = 29.8 bits (67), Expect = 0.013
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 6  CENKGTCVKDARGQPSCRCVGS-FIGPHC 33
          C+N+G C+     Q  C C  + F G +C
Sbjct: 9  CQNRGECMSTGFDQYKCDCTRTGFYGENC 37


>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
          t-PA {Human (Homo sapiens) [TaxId: 9606]}
          Length = 41

 Score = 27.9 bits (62), Expect = 0.077
 Identities = 10/29 (34%), Positives = 11/29 (37%), Gaps = 1/29 (3%)

Query: 6  CENKGTCV-KDARGQPSCRCVGSFIGPHC 33
          C N GTC          C+C   F G  C
Sbjct: 6  CFNGGTCQQALYFSDFVCQCPEGFAGKSC 34


>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
          IIa) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 48

 Score = 27.8 bits (62), Expect = 0.092
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 6  CENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35
          C + GTC+ D  G  SC C   + G  C +
Sbjct: 16 CGH-GTCI-DGIGSFSCDCRSGWEGRFCQR 43


>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor,
          HBEGF {Human (Homo sapiens) [TaxId: 9606]}
          Length = 41

 Score = 27.0 bits (60), Expect = 0.16
 Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 2/32 (6%)

Query: 3  KGYCENKGTC-VKDARGQPSCRCVGSFIGPHC 33
          K +C + G C        PSC C   + G  C
Sbjct: 7  KDFCIH-GECKYVKELRAPSCICHPGYHGERC 37


>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 63

 Score = 27.3 bits (60), Expect = 0.18
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 4/38 (10%)

Query: 3  KGYCENKGTCVK----DARGQPSCRCVGSFIGPHCAQK 36
          K +C N G C          +  C+C   F G  C + 
Sbjct: 11 KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTEN 48


>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits
          {Rhodospirillum rubrum [TaxId: 1085]}
          Length = 52

 Score = 25.5 bits (56), Expect = 0.59
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 48 ATVVFLIIIALFVWMICARSER 69
              FL ++AL +  I   +ER
Sbjct: 16 GLATFLFVLALLIHFILLSTER 37


>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 96

 Score = 26.4 bits (58), Expect = 0.68
 Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 6/56 (10%)

Query: 68  ERRREPKKLVAQTNDQTGSQVNFYYGGAPYAESVAPSHHSTYAHYYDDEEDGWEMP 123
            R ++    + +   +   +  F         S+   H   Y  YY  +  G    
Sbjct: 37  YREKKTAPWITRIPQELVKKGQFPIP------SITWEHTGRYRCYYGSDTAGRSES 86


>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
          [TaxId: 4682]}
          Length = 425

 Score = 26.6 bits (58), Expect = 1.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 16 ARGQPSCRCVGSFIGPHCAQKS 37
          + G P C C   + GP C++K 
Sbjct: 33 SEGSPKCECNTCYTGPDCSEKI 54


>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter
           AcrB transmembrane domain {Escherichia coli [TaxId:
           562]}
          Length = 199

 Score = 25.9 bits (56), Expect = 2.1
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 5   YCENKGTCVKDARGQPSCRCVGSFIG----------PHCAQKSEFAYIAGGIAATVVFLI 54
               +G   K+A  +   +  G+ +G          P          I    + T+V  +
Sbjct: 120 VMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAM 179

Query: 55  IIALFV 60
            +++ V
Sbjct: 180 ALSVLV 185


>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux
           transporter AcrB transmembrane domain {Escherichia coli
           [TaxId: 562]}
          Length = 222

 Score = 24.7 bits (53), Expect = 5.1
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 7/38 (18%)

Query: 39  FAYIAGGIAATVVFLIII-ALFVWMICARSERRREPKK 75
              + G + ATV+ +  +   FV +      RRR  +K
Sbjct: 191 TGVMGGMVTATVLAIFFVPVFFVVV------RRRFSRK 222


>d3cx5d1 a.3.1.3 (D:62-260) Cytochrome bc1 domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 199

 Score = 24.2 bits (52), Expect = 6.8
 Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 1/29 (3%)

Query: 106 HSTYAHYYDDEEDGWEMPN-FYNETYMKG 133
            S    Y D+   G  +P       Y  G
Sbjct: 131 FSLLTGYPDEPPAGVALPPGSNYNPYFPG 159


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.438 

Gapped
Lambda     K      H
   0.267   0.0422    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 555,563
Number of extensions: 23800
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 35
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)