BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3618
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55080|MFAP1_CHICK Microfibrillar-associated protein 1 OS=Gallus gallus GN=MFAP1 PE=2
SV=1
Length = 442
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 73/88 (82%)
Query: 35 DSEEDILKRDFSSATLDDHFDKTVLPKVMQVKNFGRSGRTKYSHLVDQDTTQFDSPWLSE 94
D +E++ KRDFS+ TL+DHF+KT+LPKVMQVKNFGRSGRTKY+HLVDQDTT FDS W E
Sbjct: 353 DEDEEVYKRDFSAPTLEDHFNKTILPKVMQVKNFGRSGRTKYTHLVDQDTTSFDSAWGQE 412
Query: 95 TSQNHKFHLNQAAGMKQVFVKPSLSKRK 122
++QN KF +AAG++ VF +PS KRK
Sbjct: 413 SAQNTKFFKQKAAGVRDVFERPSAKKRK 440
>sp|Q9CQU1|MFAP1_MOUSE Microfibrillar-associated protein 1 OS=Mus musculus GN=Mfap1 PE=1
SV=1
Length = 439
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 73/88 (82%)
Query: 35 DSEEDILKRDFSSATLDDHFDKTVLPKVMQVKNFGRSGRTKYSHLVDQDTTQFDSPWLSE 94
D +E++ KRDFS+ TL+DHF+KT+LPKVMQVKNFGRSGRTKY+HLVDQDTT FDS W E
Sbjct: 350 DEDEEVYKRDFSAPTLEDHFNKTILPKVMQVKNFGRSGRTKYTHLVDQDTTSFDSAWGQE 409
Query: 95 TSQNHKFHLNQAAGMKQVFVKPSLSKRK 122
++QN KF +AAG++ VF +PS KRK
Sbjct: 410 SAQNTKFFKQKAAGVRDVFERPSAKKRK 437
>sp|P55081|MFAP1_HUMAN Microfibrillar-associated protein 1 OS=Homo sapiens GN=MFAP1 PE=1
SV=2
Length = 439
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 73/88 (82%)
Query: 35 DSEEDILKRDFSSATLDDHFDKTVLPKVMQVKNFGRSGRTKYSHLVDQDTTQFDSPWLSE 94
D +E++ KRDFS+ TL+DHF+KT+LPKVMQVKNFGRSGRTKY+HLVDQDTT FDS W E
Sbjct: 350 DEDEEVYKRDFSAPTLEDHFNKTILPKVMQVKNFGRSGRTKYTHLVDQDTTSFDSAWGQE 409
Query: 95 TSQNHKFHLNQAAGMKQVFVKPSLSKRK 122
++QN KF +AAG++ VF +PS KRK
Sbjct: 410 SAQNTKFFKQKAAGVRDVFERPSAKKRK 437
>sp|Q5EA98|MFAP1_BOVIN Microfibrillar-associated protein 1 OS=Bos taurus GN=MFAP1 PE=2
SV=1
Length = 439
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 73/88 (82%)
Query: 35 DSEEDILKRDFSSATLDDHFDKTVLPKVMQVKNFGRSGRTKYSHLVDQDTTQFDSPWLSE 94
D +E++ KRDFS+ TL+DHF+KT+LPKVMQVKNFGRSGRTKY+HLVDQDTT FDS W E
Sbjct: 350 DEDEEVYKRDFSAPTLEDHFNKTILPKVMQVKNFGRSGRTKYTHLVDQDTTSFDSAWGQE 409
Query: 95 TSQNHKFHLNQAAGMKQVFVKPSLSKRK 122
++QN KF +AAG++ VF +PS KRK
Sbjct: 410 SAQNTKFFKQKAAGVRDVFERPSAKKRK 437
>sp|Q54SU3|MFAP1_DICDI Protein MFAP1 homolog OS=Dictyostelium discoideum GN=mfap1 PE=3
SV=1
Length = 460
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 64/96 (66%), Gaps = 5/96 (5%)
Query: 1 MVEDEVRAED---AKNRIKNGEEARLEDVNTDDENDEDSEED--ILKRDFSSATLDDHFD 55
M +D++ ED ++ I N ++ +L+ + D ++D I +DFS+ T +D F+
Sbjct: 328 MTDDQILKEDPSRSRTNIDNSQKKQLKFLQRDYHRGAFFQDDEYIKNKDFSAPTGEDKFN 387
Query: 56 KTVLPKVMQVKNFGRSGRTKYSHLVDQDTTQFDSPW 91
+ +LPKVMQVKNFG++GRTKY+HL DQDTT+ DS W
Sbjct: 388 RELLPKVMQVKNFGKAGRTKYTHLKDQDTTEKDSLW 423
>sp|Q9P7H6|YLK3_SCHPO Uncharacterized protein C1782.03 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC1782.03 PE=1 SV=1
Length = 355
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 38 EDIL-KRDFSSATLDDHFDKTVLPKVMQVKN--FGRSGRTKYSHLVDQDTTQFDSPWLSE 94
EDI+ KRD+S AT + +K +LPK MQ++ F ++G+T+++HL ++DTT+ S W
Sbjct: 269 EDIVSKRDYSEATEGEVLNKDLLPKPMQIRGDLFAKAGQTRWTHLANEDTTKEGSAWYDP 328
Query: 95 TSQNHKFHLNQAAGM 109
+ + +L++ G+
Sbjct: 329 KNPILQKNLHRLGGL 343
>sp|P06882|THYG_RAT Thyroglobulin OS=Rattus norvegicus GN=Tg PE=1 SV=4
Length = 2768
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 61 KVMQ-VKNFGRSGRTKYSHLVDQDTTQFDSPW 91
KVMQ NF RSG Y H Q +F +PW
Sbjct: 2655 KVMQYFSNFIRSGNPNYPHEFSQKAAEFATPW 2686
>sp|Q9CN92|GLGC_PASMU Glucose-1-phosphate adenylyltransferase OS=Pasteurella multocida
(strain Pm70) GN=glgC PE=3 SV=1
Length = 439
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 33 DEDSEEDILKRDFSSATLDDHFDKTVLPK-----VMQVKNFGRS--GRTKYSHLVDQDTT 85
D D D+L+R+ SS F K +LPK V+ F RS GR + +D
Sbjct: 222 DADYLYDVLEREVSSPYTSHDFGKDILPKALEEGVLYAHPFSRSCMGRNTEGEIYWRDVG 281
Query: 86 QFDSPWLS 93
DS W S
Sbjct: 282 TLDSFWQS 289
>sp|Q47SI8|Y541_THEFY UPF0182 protein Tfu_0541 OS=Thermobifida fusca (strain YX)
GN=Tfu_0541 PE=3 SV=1
Length = 1018
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 9 EDAKNRIKNGEEARLEDVNTDDENDEDSEEDILKRDFSSATLD 51
++A N + +G+EA LE+ TD E E+ E+ D + A D
Sbjct: 930 QEALNNLFDGDEAPLEEPTTDGEAREEEEQPQASSDLAQALED 972
>sp|Q28C74|LPPRC_XENTR Leucine-rich PPR motif-containing protein, mitochondrial OS=Xenopus
tropicalis GN=lrpprc PE=2 SV=1
Length = 1391
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 5 EVRAEDAKNRIKNGEEARLEDVNTDDENDEDS---EEDILKRDFSSATLDDHFDKTVLPK 61
EV+A+ + + G A L + +N +++ ++++ ++D SSA LD
Sbjct: 693 EVKAKYEQENLAIGTYAALIQLCCRHDNPDEALNLKQELNRKD-SSAVLDTS------KY 745
Query: 62 VMQVKNFGRSGRTKYSHLVDQDTTQFDSPWLSETSQNHKFHLNQAAGMK 110
+ VK FG++GR + V ++ + D P L ET+ FH+ AA ++
Sbjct: 746 LALVKVFGKNGRIADAINVLKEMKEKDVP-LKETTTTSFFHILNAAALR 793
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.123 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,487,117
Number of Sequences: 539616
Number of extensions: 2055812
Number of successful extensions: 14937
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 163
Number of HSP's that attempted gapping in prelim test: 13572
Number of HSP's gapped (non-prelim): 1160
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)