Query psy3618
Match_columns 136
No_of_seqs 109 out of 139
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 21:11:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ui4_A Peptidyl-prolyl CIS-tra 14.5 53 0.0018 22.0 0.8 18 2-19 15-32 (101)
2 3lgb_A DNA primase large subun 13.9 50 0.0017 26.0 0.6 43 32-78 52-96 (194)
3 3stb_C RNA-editing complex pro 13.4 56 0.0019 24.7 0.8 20 6-25 96-115 (148)
4 1jns_A Peptidyl-prolyl CIS-tra 13.1 32 0.0011 22.3 -0.6 18 2-19 11-28 (92)
5 3koj_A Uncharacterized protein 10.8 78 0.0027 22.1 0.8 19 7-25 63-81 (108)
6 1dp7_P MHC class II transcript 9.9 47 0.0016 22.3 -0.6 23 55-78 47-69 (76)
7 3iwh_A Rhodanese-like domain p 9.9 48 0.0016 22.0 -0.6 28 5-32 3-30 (103)
8 3l9q_A DNA primase large subun 9.9 48 0.0016 26.1 -0.6 43 33-78 50-95 (195)
9 2hly_A AGR_C_4178P, hypothetic 9.3 74 0.0025 25.7 0.3 39 28-66 84-123 (207)
10 4dam_A Single-stranded DNA-bin 7.6 1.2E+02 0.0043 21.4 0.8 19 7-25 73-91 (128)
No 1
>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A
Probab=14.47 E-value=53 Score=22.00 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.8
Q ss_pred chhhhhhHHHHhhhcccc
Q psy3618 2 VEDEVRAEDAKNRIKNGE 19 (136)
Q Consensus 2 ~~~~~~~~~~~~~~k~g~ 19 (136)
|.++-+|+.+..+|++|+
T Consensus 15 v~~~~~A~~i~~~l~~G~ 32 (101)
T 3ui4_A 15 CEKHGKIMEAMEKLKSGM 32 (101)
T ss_dssp ESSHHHHHHHHHHHHTTC
T ss_pred ECCHHHHHHHHHHHHCCC
Confidence 567889999999999996
No 2
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=13.89 E-value=50 Score=25.98 Aligned_cols=43 Identities=21% Similarity=0.406 Sum_probs=29.3
Q ss_pred CCccchhhhhhccCCCCcccccccccccchhhhhh-ccCcCC-Cccccc
Q psy3618 32 NDEDSEEDILKRDFSSATLDDHFDKTVLPKVMQVK-NFGRSG-RTKYSH 78 (136)
Q Consensus 32 ~~~~~~e~I~kRD~s~pt~eD~vdk~~LPkvMQvR-nfGK~G-rTKyTh 78 (136)
+.-++.-.+++.-|+- .-.|.|||+. ..||| ++|+.| |+.|+=
T Consensus 52 ls~ee~l~f~r~~F~k-~~~d~F~K~y---~Y~IrH~yG~eG~r~~Y~p 96 (194)
T 3lgb_A 52 LSADEALKFWSEAFTN-MTMEKFNKEY---RYSFRHNYGLEGNRINYKP 96 (194)
T ss_dssp CCHHHHHHHHHHHSTT-SCHHHHHHHT---HHHHHHHTTCSTTCCCCCC
T ss_pred CCHHHHHHHHHHHccc-CChhhhccce---eeeeeeecCCCCCCcccCC
Confidence 4444455667777774 2346678765 67999 599998 688874
No 3
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=13.42 E-value=56 Score=24.74 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=17.1
Q ss_pred hhhHHHHhhhccccchhccc
Q psy3618 6 VRAEDAKNRIKNGEEARLED 25 (136)
Q Consensus 6 ~~~~~~~~~~k~g~~~~l~~ 25 (136)
--||.+++.+++|+.|+++-
T Consensus 96 ~lAE~i~~ylkkG~rVlVeG 115 (148)
T 3stb_C 96 DYSSRVKEQLRDGEWFLVTG 115 (148)
T ss_dssp HHHHHHHHHCCTTCEEEEEE
T ss_pred hHHHHHHHHhcCCCEEEEEE
Confidence 34889999999999998873
No 4
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A
Probab=13.06 E-value=32 Score=22.29 Aligned_cols=18 Identities=44% Similarity=0.519 Sum_probs=14.6
Q ss_pred chhhhhhHHHHhhhcccc
Q psy3618 2 VEDEVRAEDAKNRIKNGE 19 (136)
Q Consensus 2 ~~~~~~~~~~~~~~k~g~ 19 (136)
|.++-.|+.+..+|++|+
T Consensus 11 ~~~~~~A~~i~~~l~~g~ 28 (92)
T 1jns_A 11 VKEEKLALDLLEQIKNGA 28 (92)
T ss_dssp ESSHHHHHHHHHHHHHTC
T ss_pred eCCHHHHHHHHHHHHCCC
Confidence 345667899999999997
No 5
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=10.78 E-value=78 Score=22.13 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=16.4
Q ss_pred hhHHHHhhhccccchhccc
Q psy3618 7 RAEDAKNRIKNGEEARLED 25 (136)
Q Consensus 7 ~~~~~~~~~k~g~~~~l~~ 25 (136)
.||.+.+.+++|..|.++-
T Consensus 63 ~AE~~~~yl~KG~~V~VeG 81 (108)
T 3koj_A 63 VAQELQDRCRLNDEVVLEG 81 (108)
T ss_dssp HHHHHHHHCCTTCEEEEEE
T ss_pred HHHHHHHhCCCCCEEEEEE
Confidence 5888899999999998864
No 6
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=9.91 E-value=47 Score=22.35 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=16.8
Q ss_pred cccccchhhhhhccCcCCCccccc
Q psy3618 55 DKTVLPKVMQVKNFGRSGRTKYSH 78 (136)
Q Consensus 55 dk~~LPkvMQvRnfGK~GrTKyTh 78 (136)
=+.+.|. +..|-+|-.|++||-.
T Consensus 47 ir~~FP~-l~trRLg~rG~skyhy 69 (76)
T 1dp7_P 47 IRSVFMG-LRTRRLGTRGNSKYHY 69 (76)
T ss_dssp HHHHSTT-CEEEEESSTTCCEEEE
T ss_pred HHHHCCC-ceeeeccccCCccEEE
Confidence 4566666 5667799999999853
No 7
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=9.90 E-value=48 Score=22.04 Aligned_cols=28 Identities=25% Similarity=0.539 Sum_probs=22.9
Q ss_pred hhhhHHHHhhhccccchhcccccCCCCC
Q psy3618 5 EVRAEDAKNRIKNGEEARLEDVNTDDEN 32 (136)
Q Consensus 5 ~~~~~~~~~~~k~g~~~~l~~~~~~d~~ 32 (136)
++.+++++++|.+++.+.|-||-+.++.
T Consensus 3 ~Is~~el~~~l~~~~~~~liDvR~~~e~ 30 (103)
T 3iwh_A 3 SITTDELKNKLLESKPVQIVDVRTDEET 30 (103)
T ss_dssp EECHHHHHHGGGSSSCCEEEECSCHHHH
T ss_pred CcCHHHHHHHHhCCCCeEEEECCChhHH
Confidence 4567889999999999999999876544
No 8
>3l9q_A DNA primase large subunit; POL alpha, DNA replication, polymerase, iron-sulfur DNA-binding, DNA-directed RNA polymerase, iron, iron-sulfur binding; HET: DNA; 1.70A {Homo sapiens} PDB: 3q36_A*
Probab=9.89 E-value=48 Score=26.11 Aligned_cols=43 Identities=28% Similarity=0.546 Sum_probs=18.8
Q ss_pred CccchhhhhhccCCCCc-ccccccccccchhhhhh-ccCcCC-Cccccc
Q psy3618 33 DEDSEEDILKRDFSSAT-LDDHFDKTVLPKVMQVK-NFGRSG-RTKYSH 78 (136)
Q Consensus 33 ~~~~~e~I~kRD~s~pt-~eD~vdk~~LPkvMQvR-nfGK~G-rTKyTh 78 (136)
.-++.-.+++.-|+-+. -.|.+||+. ..||| ++|+.| |+.|+=
T Consensus 50 s~ee~l~fwr~~F~k~~~~~d~f~K~y---~Y~IrH~yG~eG~r~~Y~p 95 (195)
T 3l9q_A 50 TLEQALQFWKQEFIKGKMDPDKFDKGY---SYNIRHSFGKEGKRTDYTP 95 (195)
T ss_dssp EEEEEECTTCC-----------CCCCE---EEEEEECC------CCCCC
T ss_pred CHHHHHHHHHHHhccccCChhhhhhhh---heeeeeecCCCCCCcccCC
Confidence 33444556677776533 245678865 57888 599999 588874
No 9
>2hly_A AGR_C_4178P, hypothetical protein ATU2299; ATC2257, MCSG, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} SCOP: d.3.1.19
Probab=9.29 E-value=74 Score=25.66 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=26.2
Q ss_pred CCCCCCccchhhhhhccCCCCcccccc-cccccchhhhhh
Q psy3618 28 TDDENDEDSEEDILKRDFSSATLDDHF-DKTVLPKVMQVK 66 (136)
Q Consensus 28 ~~d~~~~~~~e~I~kRD~s~pt~eD~v-dk~~LPkvMQvR 66 (136)
.+|.+|---+.+=.-=|||+|-+.+.= +.-+-||.||.|
T Consensus 84 ~~d~FH~WVe~Dg~~IDFMAP~f~e~~~~~~ip~KMfQr~ 123 (207)
T 2hly_A 84 AGENFHCWVEADGWAIDFMAPAFSEGTDALAVPAKMFQRP 123 (207)
T ss_dssp SSTTCEEEEEETTEEEETTGGGTTTTCGGGCCCCCBEEEE
T ss_pred CCCceEEEEEECCEEeeeeccccccCCCCCCCChHHhcch
Confidence 455555544444445699999998854 556667888877
No 10
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=7.57 E-value=1.2e+02 Score=21.41 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=16.1
Q ss_pred hhHHHHhhhccccchhccc
Q psy3618 7 RAEDAKNRIKNGEEARLED 25 (136)
Q Consensus 7 ~~~~~~~~~k~g~~~~l~~ 25 (136)
.||.+.+.+++|..|.++-
T Consensus 73 ~Ae~~~~~l~KG~~V~VeG 91 (128)
T 4dam_A 73 LATNASGSLAVGDPVVVQG 91 (128)
T ss_dssp HHHHHHHHCCTTCEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEE
Confidence 4788888999999998864
Done!