Query psy3618
Match_columns 136
No_of_seqs 109 out of 139
Neff 2.9
Searched_HMMs 13730
Date Fri Aug 16 21:11:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3618.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3618hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hlya1 d.3.1.19 (A:5-206) Hyp 46.0 2.9 0.00021 31.9 0.9 56 28-85 79-144 (202)
2 d1jnsa_ d.26.1.1 (A:) Parvulin 28.0 4.5 0.00033 25.3 -0.6 54 1-54 10-65 (92)
3 d2c0za1 b.82.1.1 (A:1-190) Nov 24.1 5.3 0.00038 28.7 -0.9 28 39-66 163-190 (190)
4 d1rmda1 g.37.1.1 (A:87-116) V( 19.1 5.8 0.00042 22.0 -1.2 12 18-29 11-22 (30)
5 d1kqfa1 b.52.2.2 (A:851-1015) 17.5 14 0.001 24.7 0.2 20 6-25 72-92 (165)
6 d1h0ha1 b.52.2.2 (A:813-977) T 17.5 14 0.001 25.0 0.2 20 6-25 72-92 (165)
7 d3c7bb2 d.58.36.2 (B:4-122) Di 16.1 20 0.0015 24.6 0.8 21 44-70 6-26 (119)
8 d2v4jb2 d.58.36.2 (B:2-135) Di 15.1 22 0.0016 24.8 0.7 21 44-70 19-39 (134)
9 d1eq3a_ d.26.1.1 (A:) Parvulin 12.9 23 0.0017 22.2 0.3 51 1-52 9-61 (96)
10 d1eu1a1 b.52.2.2 (A:626-780) D 12.8 20 0.0015 23.7 0.0 20 6-25 46-66 (155)
No 1
>d2hlya1 d.3.1.19 (A:5-206) Hypothetical protein Atu2299 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=45.96 E-value=2.9 Score=31.89 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=35.8
Q ss_pred CCCCCCccchhhhhhccCCCCcccccccccccc-hhhhhh---------ccCcCCCcccccccCCcCC
Q psy3618 28 TDDENDEDSEEDILKRDFSSATLDDHFDKTVLP-KVMQVK---------NFGRSGRTKYSHLVDQDTT 85 (136)
Q Consensus 28 ~~d~~~~~~~e~I~kRD~s~pt~eD~vdk~~LP-kvMQvR---------nfGK~GrTKyThL~dEDTT 85 (136)
.+|.+|---+.+=--=|||+|-+..--+--.+| |.||.| ++|++|---|+ .+.|-|
T Consensus 79 a~d~FH~wV~ad~hviDFMaP~Fse~~~a~~iP~KmfQRrld~ma~s~ddL~~~GDF~~~--p~~d~T 144 (202)
T d2hlya1 79 AGENFHCWVEADGWAIDFMAPAFSEGTDALAVPAKMFQRPLSAMAASINDLGQSGDFFYR--SEPEAT 144 (202)
T ss_dssp SSTTCEEEEEETTEEEETTGGGTTTTCGGGCCCCCBEEEEGGGCCSSTTCCCSTTCEEEE--ECHHHH
T ss_pred CccceEEEEEECCEEEEecccccccCCCCCcCcHHHHhhhhhhhccCHHHhcCCCCeeec--CChHHH
Confidence 444555433333333599999987776777899 999998 27777765332 344444
No 2
>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]}
Probab=28.02 E-value=4.5 Score=25.34 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=30.4
Q ss_pred CchhhhhhHHHHhhhccccch--hcccccCCCCCCccchhhhhhccCCCCcccccc
Q psy3618 1 MVEDEVRAEDAKNRIKNGEEA--RLEDVNTDDENDEDSEEDILKRDFSSATLDDHF 54 (136)
Q Consensus 1 ~~~~~~~~~~~~~~~k~g~~~--~l~~~~~~d~~~~~~~e~I~kRD~s~pt~eD~v 54 (136)
+|+++-.|+++.++|++|+.. ....|..+......++-+-+.++-..|.+++.+
T Consensus 10 lv~~~~~A~~i~~~l~~g~~F~~lA~~~S~d~s~~~gG~lG~~~~~~l~~~f~~~~ 65 (92)
T d1jnsa_ 10 LVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVV 65 (92)
T ss_dssp EESSHHHHHHHHHHHHHTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHCCCCHHHHHHHhCCCcccchhhhhceeeHhhhhhHHHHHH
Confidence 467888999999999999741 122333333333333334445554455554433
No 3
>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}
Probab=24.10 E-value=5.3 Score=28.72 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=24.6
Q ss_pred hhhhccCCCCcccccccccccchhhhhh
Q psy3618 39 DILKRDFSSATLDDHFDKTVLPKVMQVK 66 (136)
Q Consensus 39 ~I~kRD~s~pt~eD~vdk~~LPkvMQvR 66 (136)
-|-.||-++|.+.|..+...||.+-|+|
T Consensus 163 iiS~kD~~~~~l~~~~~~~~~p~~~~~~ 190 (190)
T d2c0za1 163 LLSPRDQDALLLAEARDAGLLPTYATCQ 190 (190)
T ss_dssp BCCHHHHTCBCHHHHHHTTCSCBHHHHC
T ss_pred EeCHHHhCCCCHHHHHhcCCCCChhhcC
Confidence 3458999999999999999999998876
No 4
>d1rmda1 g.37.1.1 (A:87-116) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.12 E-value=5.8 Score=22.04 Aligned_cols=12 Identities=42% Similarity=0.512 Sum_probs=9.8
Q ss_pred ccchhcccccCC
Q psy3618 18 GEEARLEDVNTD 29 (136)
Q Consensus 18 g~~~~l~~~~~~ 29 (136)
-|||.|++|||-
T Consensus 11 ~eEvsleKYnhH 22 (30)
T d1rmda1 11 NEEVSLEKYNHH 22 (30)
T ss_dssp CCEEEHHHHHHH
T ss_pred cchhchhhhcch
Confidence 478999999863
No 5
>d1kqfa1 b.52.2.2 (A:851-1015) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]}
Probab=17.53 E-value=14 Score=24.69 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=16.0
Q ss_pred hhhHHHHhh-hccccchhccc
Q psy3618 6 VRAEDAKNR-IKNGEEARLED 25 (136)
Q Consensus 6 ~~~~~~~~~-~k~g~~~~l~~ 25 (136)
+-.+||+.+ |+.|+.|+|+-
T Consensus 72 inp~dA~~lGI~dGD~V~v~s 92 (165)
T d1kqfa1 72 ISETLAAAKGINNGDRVTVSS 92 (165)
T ss_dssp ECHHHHHHHTCCTTCEEEEEC
T ss_pred EcHhHHHHcCCCccceeEEeC
Confidence 456788776 99999999963
No 6
>d1h0ha1 b.52.2.2 (A:813-977) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}
Probab=17.52 E-value=14 Score=25.04 Aligned_cols=20 Identities=45% Similarity=0.542 Sum_probs=16.5
Q ss_pred hhhHHHHhh-hccccchhccc
Q psy3618 6 VRAEDAKNR-IKNGEEARLED 25 (136)
Q Consensus 6 ~~~~~~~~~-~k~g~~~~l~~ 25 (136)
+-.+||+.+ |+.|+.|+++.
T Consensus 72 i~p~dA~~lGi~dGD~V~V~s 92 (165)
T d1h0ha1 72 MSEELATLRGIKNGDKVILES 92 (165)
T ss_dssp ECHHHHHHHTCCTTCEEEEEE
T ss_pred ECHHHHHHcCCCcCCEEEEEC
Confidence 456788877 99999999975
No 7
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=16.14 E-value=20 Score=24.61 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=15.0
Q ss_pred cCCCCcccccccccccchhhhhhccCc
Q psy3618 44 DFSSATLDDHFDKTVLPKVMQVKNFGR 70 (136)
Q Consensus 44 D~s~pt~eD~vdk~~LPkvMQvRnfGK 70 (136)
|+--|.++ +.||.+++ |||||
T Consensus 6 digpp~y~-----~~~ppvi~-~nyGk 26 (119)
T d3c7bb2 6 DFGPPYFR-----DLLHPVIA-KNYGK 26 (119)
T ss_dssp SCCSCCGG-----GGSCHHHH-HHTTC
T ss_pred CCCCCChH-----HhCCHHHH-hcCCC
Confidence 55555554 46999998 88886
No 8
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Probab=15.06 E-value=22 Score=24.83 Aligned_cols=21 Identities=38% Similarity=0.759 Sum_probs=15.5
Q ss_pred cCCCCcccccccccccchhhhhhccCc
Q psy3618 44 DFSSATLDDHFDKTVLPKVMQVKNFGR 70 (136)
Q Consensus 44 D~s~pt~eD~vdk~~LPkvMQvRnfGK 70 (136)
|+--|.++ +.||.++| +||||
T Consensus 19 digP~~y~-----~~lppvi~-~nyGk 39 (134)
T d2v4jb2 19 DIGPRKFD-----EFFPPVIA-KNFGS 39 (134)
T ss_dssp CCCSCCTT-----TTCCHHHH-HHTTC
T ss_pred cCCCCCHH-----HhCCHHHH-hcCCC
Confidence 56555554 56899998 89986
No 9
>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]}
Probab=12.94 E-value=23 Score=22.24 Aligned_cols=51 Identities=12% Similarity=0.233 Sum_probs=28.7
Q ss_pred CchhhhhhHHHHhhhccccch--hcccccCCCCCCccchhhhhhccCCCCcccc
Q psy3618 1 MVEDEVRAEDAKNRIKNGEEA--RLEDVNTDDENDEDSEEDILKRDFSSATLDD 52 (136)
Q Consensus 1 ~~~~~~~~~~~~~~~k~g~~~--~l~~~~~~d~~~~~~~e~I~kRD~s~pt~eD 52 (136)
+|+++-+|+.+.++|++|+-. .-..|. +|.....++-+.+.++-..|-+++
T Consensus 9 l~~~~~~a~~i~~~i~~g~~F~~lA~~~S-~d~~~~~G~lG~~~~~~l~~ef~~ 61 (96)
T d1eq3a_ 9 LCEKHGKIMEAMEKLKSGMRFNEVAAQYS-EDKARQGGDLGWMTRGSMVGPFQE 61 (96)
T ss_dssp EECCCSTHHHHHHHHTTTTSHHHHHHHHC-CCTTTCCSEEEEESSCCSSSHHHH
T ss_pred EECCHHHHHHHHHHHHCCCCHHHHHHHhC-cCccccccccceechHHhhHHHHH
Confidence 367788899999999999741 113343 344444333344444444444443
No 10
>d1eu1a1 b.52.2.2 (A:626-780) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.78 E-value=20 Score=23.66 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=16.3
Q ss_pred hhhHHHHhh-hccccchhccc
Q psy3618 6 VRAEDAKNR-IKNGEEARLED 25 (136)
Q Consensus 6 ~~~~~~~~~-~k~g~~~~l~~ 25 (136)
+-.+||+.+ |+.|+.|++.-
T Consensus 46 Inp~dA~~~GI~dGD~V~V~n 66 (155)
T d1eu1a1 46 INPADAAARGIADGDVLRVFN 66 (155)
T ss_dssp ECHHHHHTTTCCTTCEEEEEC
T ss_pred ECHHHHHHcCCCCcCEEEEee
Confidence 456788877 99999999874
Done!